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revision 3947 by caltinay, Wed Aug 22 23:19:10 2012 UTC revision 4216 by caltinay, Tue Feb 19 05:15:38 2013 UTC
# Line 1  Line 1 
1  ########################################################  ##############################################################################
2  #  #
3  # Copyright (c) 2003-2012 by University of Queensland  # Copyright (c) 2003-2013 by University of Queensland
4  # Earth Systems Science Computational Center (ESSCC)  # http://www.uq.edu.au
 # http://www.uq.edu.au/esscc  
5  #  #
6  # Primary Business: Queensland, Australia  # Primary Business: Queensland, Australia
7  # Licensed under the Open Software License version 3.0  # Licensed under the Open Software License version 3.0
8  # http://www.opensource.org/licenses/osl-3.0.php  # http://www.opensource.org/licenses/osl-3.0.php
9  #  #
10  ########################################################  # Development until 2012 by Earth Systems Science Computational Center (ESSCC)
11    # Development since 2012 by School of Earth Sciences
12    #
13    ##############################################################################
14    
15  EnsureSConsVersion(0,98,1)  EnsureSConsVersion(0,98,1)
16  EnsurePythonVersion(2,5)  EnsurePythonVersion(2,5)
# Line 16  EnsurePythonVersion(2,5) Line 18  EnsurePythonVersion(2,5)
18  import sys, os, platform, re  import sys, os, platform, re
19  from distutils import sysconfig  from distutils import sysconfig
20  from site_init import *  from site_init import *
 import subprocess  
21  from subprocess import PIPE, Popen  from subprocess import PIPE, Popen
22    
23  # Version number to check for in options file. Increment when new features are  # Version number to check for in options file. Increment when new features are
# Line 132  vars.AddVariables( Line 133  vars.AddVariables(
133    ('pythonlibname', 'Name of the python library to link. (This is found automatically for python2.X.)', ''),    ('pythonlibname', 'Name of the python library to link. (This is found automatically for python2.X.)', ''),
134    ('pythonlibpath', 'Path to the python library. (You should not need to set this unless your python has moved)',''),    ('pythonlibpath', 'Path to the python library. (You should not need to set this unless your python has moved)',''),
135    ('pythonincpath','Path to python include files. (You should not need to set this unless your python has moved',''),    ('pythonincpath','Path to python include files. (You should not need to set this unless your python has moved',''),
136      BoolVariable('BADPYTHONMACROS','Extra \#include to get around a python bug.', True),
137  )  )
138    
139  ##################### Create environment and help text #######################  ##################### Create environment and help text #######################
# Line 143  vars.AddVariables( Line 145  vars.AddVariables(
145  # in default locations.  # in default locations.
146  env = Environment(tools = ['default'], options = vars,  env = Environment(tools = ['default'], options = vars,
147                    ENV = {'PATH': os.environ['PATH']})                    ENV = {'PATH': os.environ['PATH']})
148                      
149    
150    #set the vars for clang
151    def mkclang(env):
152      env['CC']='clang'
153      env['CXX']='clang++'
154                      
155                      
156  if env['tools_names'] != 'default':  if env['tools_names'] != 'default':
157        zz=env['tools_names']
158        if 'clang' in zz:
159            zz.remove('clang')
160            zz.insert(0, mkclang)
161      env = Environment(tools = ['default'] + env['tools_names'], options = vars,      env = Environment(tools = ['default'] + env['tools_names'], options = vars,
162                        ENV = {'PATH' : os.environ['PATH']})                        ENV = {'PATH' : os.environ['PATH']})
163    
# Line 171  if len(vars.UnknownVariables())>0: Line 185  if len(vars.UnknownVariables())>0:
185    
186  #################### Make sure install directories exist #####################  #################### Make sure install directories exist #####################
187    
188  env['BUILD_DIR']=env['build_dir']  env['BUILD_DIR']=Dir(env['build_dir']).abspath
189  prefix=Dir(env['prefix']).abspath  prefix=Dir(env['prefix']).abspath
190  env['incinstall'] = os.path.join(prefix, 'include')  env['incinstall'] = os.path.join(prefix, 'include')
191  env['bininstall'] = os.path.join(prefix, 'bin')  env['bininstall'] = os.path.join(prefix, 'bin')
# Line 211  cc_name=os.path.basename(env['CC']) Line 225  cc_name=os.path.basename(env['CC'])
225    
226  if cc_name == 'icc':  if cc_name == 'icc':
227      # Intel compiler      # Intel compiler
228      cc_flags    = "-std=c99 -fPIC -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"      # #1875: offsetof applied to non-POD types is nonstandard (in boost)
229      cc_optim    = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias -ip"      cc_flags    = "-std=c99 -fPIC -w2 -wd1875 -Wno-unknown-pragmas -DBLOCKTIMER -DCORE_ID1"
230        cc_optim    = "-O3 -ftz -fno-alias -ipo -xHost"
231      cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"      cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
232      omp_flags   = "-openmp -openmp_report0"      omp_flags   = "-openmp"
233      omp_ldflags = "-openmp -openmp_report0 -lpthread"      omp_ldflags = "-openmp -openmp_report=1"
234      fatalwarning = "-Werror"      fatalwarning = "-Werror"
235  elif cc_name[:3] == 'gcc':  elif cc_name[:3] == 'gcc':
236      # GNU C on any system      # GNU C on any system
237      cc_flags     = "-pedantic -Wall -fPIC -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"      # note that -ffast-math is not used because it breaks isnan(),
238        # see mantis #691
239        cc_flags     = "-pedantic -Wall -fPIC -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"
240      cc_optim     = "-O3"      cc_optim     = "-O3"
241      cc_debug     = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"      cc_debug     = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
242      omp_flags    = "-fopenmp"      omp_flags    = "-fopenmp"
# Line 250  if env['cc_extra']  != '': env.Append(CF Line 267  if env['cc_extra']  != '': env.Append(CF
267  if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])  if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
268  if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])  if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])
269    
270    if env['BADPYTHONMACROS']: env.Append(CXXFLAGS = ' -DBADPYTHONMACROS')
271    
272  if env['usepython3']:  if env['usepython3']:
273      env.Append(CPPDEFINES=['ESPYTHON3'])      env.Append(CPPDEFINES=['ESPYTHON3'])
274    
# Line 334  for key in 'OMP_NUM_THREADS', 'ESCRIPT_N Line 353  for key in 'OMP_NUM_THREADS', 'ESCRIPT_N
353          env['ENV'][key] = 1          env['ENV'][key] = 1
354    
355  env_export=env['env_export']  env_export=env['env_export']
356  env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME','TMPDIR','TEMP','TMP'])  env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME','KMP_MONITOR_STACKSIZE','TMPDIR','TEMP','TMP'])
357    
358  for key in set(env_export):  for key in set(env_export):
359      try:      try:
# Line 523  env.PrependENVPath(LD_LIBRARY_PATH_KEY, Line 542  env.PrependENVPath(LD_LIBRARY_PATH_KEY,
542    
543  ######## numpy (required)  ######## numpy (required)
544    
545  if env['pythoncmd']=='python':  if not detectModule(env, 'numpy'):
546      try:      print("Cannot import numpy. If it is installed try setting your PYTHONPATH and probably %s"%LD_LIBRARY_PATH_KEY)
547        from numpy import identity      Exit(1)
     except ImportError:  
       print("Cannot import numpy, you need to set your PYTHONPATH and probably %s"%LD_LIBRARY_PATH_KEY)  
       Exit(1)  
 else:  
     p=subprocess.call([env['pythoncmd'],'-c','import numpy'])  
     if p!=0:  
       print("Cannot import numpy, you need to set your PYTHONPATH and probably %s"%LD_LIBRARY_PATH_KEY)  
       Exit(1)  
548    
549  ######## CppUnit (required for tests)  ######## CppUnit (required for tests)
550    
# Line 546  try: Line 557  try:
557  except:  except:
558      env['cppunit']=False      env['cppunit']=False
559    
560    ######## sympy (optional)
561    
562    if detectModule(env, 'sympy'):
563        env['sympy'] = True
564    else:
565        print("Cannot import sympy. Symbolic toolbox and nonlinear PDEs will not be available.")
566        env['sympy'] = False
567    
568    ######## pyproj (optional)
569    
570    if detectModule(env, 'pyproj'):
571        env['pyproj'] = True
572    else:
573        print("Cannot import pyproj. Inversions may not work.")
574        env['pyproj'] = False
575    
576  ######## netCDF (optional)  ######## netCDF (optional)
577    
578  netcdf_inc_path=''  netcdf_inc_path=''
# Line 691  if env['parmetis']: Line 718  if env['parmetis']:
718  ######## gmsh (optional, for tests)  ######## gmsh (optional, for tests)
719    
720  try:  try:
721      import subprocess      p=Popen(['gmsh', '-info'], stderr=PIPE)
     p=subprocess.Popen(['gmsh', '-info'], stderr=subprocess.PIPE)  
722      _,e=p.communicate()      _,e=p.communicate()
723      if e.split().count("MPI"):      if e.split().count("MPI"):
724          env['gmsh']='m'          env['gmsh']='m'
# Line 745  else: Line 771  else:
771      print("          LAPACK:  DISABLED")      print("          LAPACK:  DISABLED")
772  d_list=[]  d_list=[]
773  e_list=[]  e_list=[]
774  for i in 'debug','openmp','netcdf','parmetis','papi','mkl','umfpack','boomeramg','silo','visit','vsl_random':  for i in 'debug','openmp','boomeramg','mkl','netcdf','papi','parmetis','pyproj','silo','sympy','umfpack','visit','vsl_random':
775      if env[i]: e_list.append(i)      if env[i]: e_list.append(i)
776      else: d_list.append(i)      else: d_list.append(i)
777  for i in e_list:  for i in e_list:
# Line 948  env.Alias('build_PasoTests','$BUILD_DIR/ Line 974  env.Alias('build_PasoTests','$BUILD_DIR/
974    
975  ##################### Targets to build the documentation #####################  ##################### Targets to build the documentation #####################
976    
977  env.Alias('api_epydoc','install_all')  env.Alias('basedocs', ['examples_tarfile', 'examples_zipfile', 'api_doxygen', 'user_pdf', 'install_pdf', 'cookbook_pdf', 'inversion_pdf'])
978  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'user_pdf', 'install_pdf', 'cookbook_pdf'])  env.Alias('docs', ['basedocs', 'sphinxdoc'])
979  env.Alias('release_prep', ['docs', 'install_all'])  env.Alias('release_prep', ['docs', 'install_all'])
980    env.Alias('release_prep_old', ['basedocs', 'api_epydoc', 'install_all'])
981    
982    
983    # The test scripts are always generated, this target allows us to
984    # generate the testscripts without doing a full build
985    env.Alias('testscripts',[])
986    
987  if not IS_WINDOWS:  if not IS_WINDOWS:
988      try:      try:
989          utest=open('utest.sh','w')          utest=open('utest.sh','w')
990          utest.write(GroupTest.makeHeader(env['PLATFORM'], prefix))          utest.write(GroupTest.makeHeader(env['PLATFORM'], prefix, False))
991          for tests in TestGroups:          for tests in TestGroups:
992              utest.write(tests.makeString())              utest.write(tests.makeString())
993          utest.close()          utest.close()
994          Execute(Chmod('utest.sh', 0o755))          Execute(Chmod('utest.sh', 0o755))
995          print("Generated utest.sh.")          print("Generated utest.sh.")
996            # This version contains only python tests - I want this to be usable
997            # From a binary only install if you have the test files
998            utest=open('itest.sh','w')
999            utest.write(GroupTest.makeHeader(env['PLATFORM'], prefix, True))
1000            for tests in TestGroups:
1001              if tests.exec_cmd=='$PYTHONRUNNER ':
1002                utest.write(tests.makeString())
1003            utest.close()
1004            Execute(Chmod('itest.sh', 0o755))
1005            print("Generated itest.sh.")        
1006      except IOError:      except IOError:
1007          print("Error attempting to write unittests file.")          print("Error attempting to write unittests file.")
1008          Exit(1)          Exit(1)
1009    
1010      # delete utest.sh upon cleanup      # delete utest.sh upon cleanup
1011      env.Clean('target_init', 'utest.sh')      env.Clean('target_init', 'utest.sh')
1012        env.Clean('target_init', 'itest.sh')
1013    
1014      # Make sure that the escript wrapper is in place      # Make sure that the escript wrapper is in place
1015      if not os.path.isfile(os.path.join(env['bininstall'], 'run-escript')):      if not os.path.isfile(os.path.join(env['bininstall'], 'run-escript')):

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