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// $Id$ |
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/* |
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****************************************************************************** |
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* * |
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* COPYRIGHT ACcESS 2004 - All Rights Reserved * |
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* * |
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* This software is the property of ACcESS. No part of this code * |
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* may be copied in any form or by any means without the expressed written * |
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* consent of ACcESS. Copying, use or modification of this software * |
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* by any unauthorised person is illegal unless that person has a software * |
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* license agreement with ACcESS. * |
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* * |
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****************************************************************************** |
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*/ |
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|
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#include "MeshAdapter.h" |
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|
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#include "Data.h" |
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#include "DataFactory.h" |
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|
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using namespace std; |
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using namespace escript; |
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|
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namespace finley { |
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|
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// |
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// define the static constants |
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MeshAdapter::FunctionSpaceNamesMapType MeshAdapter::m_functionSpaceTypeNames; |
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const int MeshAdapter::DegreesOfFreedom=FINLEY_DEGREES_OF_FREEDOM; |
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const int MeshAdapter::ReducedDegreesOfFreedom=FINLEY_REDUCED_DEGREES_OF_FREEDOM; |
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const int MeshAdapter::Nodes=FINLEY_NODES; |
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const int MeshAdapter::Elements=FINLEY_ELEMENTS; |
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const int MeshAdapter::FaceElements=FINLEY_FACE_ELEMENTS; |
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const int MeshAdapter::Points=FINLEY_POINTS; |
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const int MeshAdapter::ContactElementsZero=FINLEY_CONTACT_ELEMENTS_1; |
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const int MeshAdapter::ContactElementsOne=FINLEY_CONTACT_ELEMENTS_2; |
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|
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MeshAdapter::MeshAdapter(Finley_Mesh* finleyMesh) |
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{ |
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setFunctionSpaceTypeNames(); |
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// |
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// need to use a null_deleter as Finley_Mesh_dealloc deletes the pointer |
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// for us. |
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m_finleyMesh.reset(finleyMesh,null_deleter()); |
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} |
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|
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// |
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// The copy constructor should just increment the use count |
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MeshAdapter::MeshAdapter(const MeshAdapter& in): |
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m_finleyMesh(in.m_finleyMesh) |
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{ |
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setFunctionSpaceTypeNames(); |
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} |
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|
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MeshAdapter::~MeshAdapter() |
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{ |
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// |
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// I hope the case for the pointer being zero has been taken care of. |
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// cout << "In MeshAdapter destructor." << endl; |
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if (m_finleyMesh.unique()) { |
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// cout << "Calling dealloc." << endl; |
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Finley_Mesh_dealloc(m_finleyMesh.get()); |
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// cout << "Finished dealloc." << endl; |
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} |
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} |
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|
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Finley_Mesh* MeshAdapter::getFinley_Mesh() const { |
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return m_finleyMesh.get(); |
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} |
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|
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void MeshAdapter::write(const std::string& fileName) const |
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{ |
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char fName[fileName.size()+1]; |
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strcpy(fName,fileName.c_str()); |
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Finley_Mesh_write(m_finleyMesh.get(),fName); |
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checkFinleyError(); |
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} |
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|
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string MeshAdapter::getDescription() const |
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{ |
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return "FinleyMesh"; |
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} |
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|
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string MeshAdapter::functionSpaceTypeAsString(int functionSpaceType) const |
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{ |
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FunctionSpaceNamesMapType::iterator loc; |
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loc=m_functionSpaceTypeNames.find(functionSpaceType); |
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if (loc==m_functionSpaceTypeNames.end()) { |
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return "Invalid function space type code."; |
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} else { |
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return loc->second; |
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} |
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} |
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|
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bool MeshAdapter::isValidFunctionSpaceType(int functionSpaceType) const |
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{ |
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FunctionSpaceNamesMapType::iterator loc; |
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loc=m_functionSpaceTypeNames.find(functionSpaceType); |
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return (loc!=m_functionSpaceTypeNames.end()); |
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} |
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|
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void MeshAdapter::setFunctionSpaceTypeNames() |
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{ |
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m_functionSpaceTypeNames.insert |
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(FunctionSpaceNamesMapType::value_type(DegreesOfFreedom,"Finley_DegreesOfFreedom")); |
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m_functionSpaceTypeNames.insert |
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(FunctionSpaceNamesMapType::value_type(ReducedDegreesOfFreedom,"Finley_ReducedDegreesOfFreedom")); |
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m_functionSpaceTypeNames.insert |
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(FunctionSpaceNamesMapType::value_type(Nodes,"Finley_Nodes")); |
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m_functionSpaceTypeNames.insert |
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(FunctionSpaceNamesMapType::value_type(Elements,"Finley_Elements")); |
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m_functionSpaceTypeNames.insert |
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(FunctionSpaceNamesMapType::value_type(FaceElements,"Finley_Face_Elements")); |
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m_functionSpaceTypeNames.insert |
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(FunctionSpaceNamesMapType::value_type(Points,"Finley_Points")); |
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m_functionSpaceTypeNames.insert |
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(FunctionSpaceNamesMapType::value_type(ContactElementsZero,"Finley_Contact_Elements_0")); |
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m_functionSpaceTypeNames.insert |
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(FunctionSpaceNamesMapType::value_type(ContactElementsOne,"Finley_Contact_Elements_1")); |
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} |
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|
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int MeshAdapter::getContinuousFunctionCode() const |
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{ |
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return Nodes; |
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} |
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|
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int MeshAdapter::getFunctionCode() const |
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{ |
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return Elements; |
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} |
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|
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int MeshAdapter::getFunctionOnBoundaryCode() const |
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{ |
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return FaceElements; |
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} |
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|
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int MeshAdapter::getFunctionOnContactZeroCode() const |
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{ |
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return ContactElementsZero; |
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} |
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|
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int MeshAdapter::getFunctionOnContactOneCode() const |
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{ |
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return ContactElementsOne; |
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} |
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|
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int MeshAdapter::getSolutionCode() const |
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{ |
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return DegreesOfFreedom; |
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} |
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|
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int MeshAdapter::getReducedSolutionCode() const |
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{ |
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return ReducedDegreesOfFreedom; |
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} |
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|
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int MeshAdapter::getDiracDeltaFunctionCode() const |
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{ |
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return Points; |
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} |
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|
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// |
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// return the spatial dimension of the Mesh: |
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// |
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int MeshAdapter::getDim() const |
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{ |
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int numDim=Finley_Mesh_getDim(m_finleyMesh.get()); |
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checkFinleyError(); |
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return numDim; |
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} |
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|
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// |
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// return the number of data points per sample and the number of samples |
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// needed to represent data on a parts of the mesh. |
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// |
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pair<int,int> MeshAdapter::getDataShape(int functionSpaceCode) const |
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{ |
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int numDataPointsPerSample=0; |
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int numSamples=0; |
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Finley_Mesh* mesh=m_finleyMesh.get(); |
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switch (functionSpaceCode) { |
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case(Nodes): |
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numDataPointsPerSample=1; |
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if (mesh->Nodes!=NULL) numSamples=mesh->Nodes->numNodes; |
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break; |
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case(Elements): |
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if (mesh->Elements!=NULL) { |
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numSamples=mesh->Elements->numElements; |
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numDataPointsPerSample=mesh->Elements->ReferenceElement->numQuadNodes; |
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} |
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break; |
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case(FaceElements): |
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if (mesh->FaceElements!=NULL) { |
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numDataPointsPerSample=mesh->FaceElements->ReferenceElement->numQuadNodes; |
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numSamples=mesh->FaceElements->numElements; |
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} |
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break; |
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case(Points): |
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if (mesh->Points!=NULL) { |
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numDataPointsPerSample=1; |
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numSamples=mesh->Points->numElements; |
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} |
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break; |
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case(ContactElementsZero): |
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if (mesh->ContactElements!=NULL) { |
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numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes; |
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numSamples=mesh->ContactElements->numElements; |
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} |
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break; |
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case(ContactElementsOne): |
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if (mesh->ContactElements!=NULL) { |
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numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes; |
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numSamples=mesh->ContactElements->numElements; |
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} |
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break; |
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case(DegreesOfFreedom): |
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if (mesh->Nodes!=NULL) { |
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numDataPointsPerSample=1; |
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numSamples=mesh->Nodes->numDegreesOfFreedom; |
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} |
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break; |
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case(ReducedDegreesOfFreedom): |
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if (mesh->Nodes!=NULL) { |
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numDataPointsPerSample=1; |
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numSamples=mesh->Nodes->reducedNumDegreesOfFreedom; |
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} |
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break; |
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default: |
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stringstream temp; |
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temp << "Error - Invalid function space type: " << functionSpaceCode << " for domain: " << getDescription(); |
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throw FinleyAdapterException(temp.str()); |
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break; |
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} |
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return pair<int,int>(numDataPointsPerSample,numSamples); |
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} |
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|
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// |
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// adds linear PDE of second order into a given stiffness matrix and right hand side: |
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// |
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void MeshAdapter::addPDEToSystem( |
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SystemMatrixAdapter& mat, escript::Data& rhs, |
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const escript::Data& A, const escript::Data& B, const escript::Data& C,const escript::Data& D,const escript::Data& X,const escript::Data& Y, |
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const escript::Data& d, const escript::Data& y, |
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const escript::Data& d_contact,const escript::Data& y_contact) const |
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{ |
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Finley_Mesh* mesh=m_finleyMesh.get(); |
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Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,mat.getPaso_SystemMatrix(),&(rhs.getDataC()), |
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&(A.getDataC()),&(B.getDataC()),&(C.getDataC()),&(D.getDataC()),&(X.getDataC()),&(Y.getDataC())); |
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checkFinleyError(); |
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Finley_Assemble_RobinCondition(mesh->Nodes,mesh->FaceElements, |
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mat.getPaso_SystemMatrix(), |
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&(rhs.getDataC()), |
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&(d.getDataC()),&(y.getDataC()), |
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Finley_Assemble_handelShapeMissMatch_Mean_out); |
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checkFinleyError(); |
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Finley_Assemble_RobinCondition(mesh->Nodes,mesh->ContactElements, |
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mat.getPaso_SystemMatrix(), |
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&(rhs.getDataC()), |
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&(d_contact.getDataC()), |
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&(y_contact.getDataC()), |
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Finley_Assemble_handelShapeMissMatch_Step_out); |
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checkFinleyError(); |
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} |
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|
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// |
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// adds linear PDE of second order into the right hand side only |
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// |
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void MeshAdapter::addPDEToRHS( escript::Data& rhs, |
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const escript::Data& X,const escript::Data& Y, const escript::Data& y, const escript::Data& y_contact) const |
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{ |
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Finley_Mesh* mesh=m_finleyMesh.get(); |
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|
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// Finley_Assemble_PDE_RHS(mesh->Nodes,mesh->Elements,&(rhs.getDataC()),&(X.getDataC()),&(Y.getDataC())); |
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Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,0,&(rhs.getDataC()),0,0,0,0,&(X.getDataC()),&(Y.getDataC())); |
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checkFinleyError(); |
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|
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// Finley_Assemble_RobinCondition_RHS(mesh->Nodes,mesh->FaceElements,&(rhs.getDataC()),&(y.getDataC()),Finley_Assemble_handelShapeMissMatch_Mean_out); |
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Finley_Assemble_RobinCondition(mesh->Nodes,mesh->FaceElements,0,&(rhs.getDataC()),0,&(y.getDataC()),Finley_Assemble_handelShapeMissMatch_Mean_out); |
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|
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checkFinleyError(); |
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Finley_Assemble_RobinCondition(mesh->Nodes,mesh->ContactElements,0,&(rhs.getDataC()),0,&(y_contact.getDataC()),Finley_Assemble_handelShapeMissMatch_Step_out); |
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// Finley_Assemble_RobinCondition_RHS(mesh->Nodes,mesh->ContactElements,&(rhs.getDataC()),&(y_contact.getDataC()),Finley_Assemble_handelShapeMissMatch_Step_out); |
283 |
checkFinleyError(); |
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} |
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|
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// |
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// interpolates data between different function spaces: |
288 |
// |
289 |
void MeshAdapter::interpolateOnDomain(escript::Data& target,const escript::Data& in) const |
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{ |
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const MeshAdapter& inDomain=dynamic_cast<const MeshAdapter&>(in.getFunctionSpace().getDomain()); |
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const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain()); |
293 |
if (inDomain!=*this) |
294 |
throw FinleyAdapterException("Error - Illegal domain of interpolant."); |
295 |
if (targetDomain!=*this) |
296 |
throw FinleyAdapterException("Error - Illegal domain of interpolation target."); |
297 |
|
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Finley_Mesh* mesh=m_finleyMesh.get(); |
299 |
switch(in.getFunctionSpace().getTypeCode()) { |
300 |
case(Nodes): |
301 |
switch(target.getFunctionSpace().getTypeCode()) { |
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case(Nodes): |
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case(ReducedDegreesOfFreedom): |
304 |
case(DegreesOfFreedom): |
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Finley_Assemble_CopyNodalData(mesh->Nodes,&(target.getDataC()),&(in.getDataC())); |
306 |
break; |
307 |
case(Elements): |
308 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&(in.getDataC()),&(target.getDataC())); |
309 |
break; |
310 |
case(FaceElements): |
311 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&(in.getDataC()),&(target.getDataC())); |
312 |
break; |
313 |
case(Points): |
314 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&(in.getDataC()),&(target.getDataC())); |
315 |
break; |
316 |
case(ContactElementsZero): |
317 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(in.getDataC()),&(target.getDataC())); |
318 |
break; |
319 |
case(ContactElementsOne): |
320 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(in.getDataC()),&(target.getDataC())); |
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break; |
322 |
default: |
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stringstream temp; |
324 |
temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode(); |
325 |
throw FinleyAdapterException(temp.str()); |
326 |
break; |
327 |
} |
328 |
break; |
329 |
case(Elements): |
330 |
if (target.getFunctionSpace().getTypeCode()==Elements) { |
331 |
Finley_Assemble_CopyElementData(mesh->Elements,&(target.getDataC()),&(in.getDataC())); |
332 |
} else { |
333 |
throw FinleyAdapterException("Error - No interpolation with data on elements possible."); |
334 |
} |
335 |
break; |
336 |
case(FaceElements): |
337 |
if (target.getFunctionSpace().getTypeCode()==FaceElements) { |
338 |
Finley_Assemble_CopyElementData(mesh->FaceElements,&(target.getDataC()),&(in.getDataC())); |
339 |
} else { |
340 |
throw FinleyAdapterException("Error - No interpolation with data on face elements possible."); |
341 |
break; |
342 |
} |
343 |
case(Points): |
344 |
if (target.getFunctionSpace().getTypeCode()==Points) { |
345 |
Finley_Assemble_CopyElementData(mesh->Points,&(target.getDataC()),&(in.getDataC())); |
346 |
} else { |
347 |
throw FinleyAdapterException("Error - No interpolation with data on points possible."); |
348 |
break; |
349 |
} |
350 |
break; |
351 |
case(ContactElementsZero): |
352 |
case(ContactElementsOne): |
353 |
if (target.getFunctionSpace().getTypeCode()==ContactElementsZero || target.getFunctionSpace().getTypeCode()==ContactElementsOne) { |
354 |
Finley_Assemble_CopyElementData(mesh->ContactElements,&(target.getDataC()),&(in.getDataC())); |
355 |
} else { |
356 |
throw FinleyAdapterException("Error - No interpolation with data on contact elements possible."); |
357 |
break; |
358 |
} |
359 |
break; |
360 |
case(DegreesOfFreedom): |
361 |
switch(target.getFunctionSpace().getTypeCode()) { |
362 |
case(ReducedDegreesOfFreedom): |
363 |
case(DegreesOfFreedom): |
364 |
case(Nodes): |
365 |
Finley_Assemble_CopyNodalData(mesh->Nodes,&(target.getDataC()),&(in.getDataC())); |
366 |
break; |
367 |
case(Elements): |
368 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&(in.getDataC()),&(target.getDataC())); |
369 |
break; |
370 |
case(FaceElements): |
371 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&(in.getDataC()),&(target.getDataC())); |
372 |
break; |
373 |
case(Points): |
374 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&(in.getDataC()),&(target.getDataC())); |
375 |
break; |
376 |
case(ContactElementsZero): |
377 |
case(ContactElementsOne): |
378 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(in.getDataC()),&(target.getDataC())); |
379 |
break; |
380 |
default: |
381 |
stringstream temp; |
382 |
temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode(); |
383 |
throw FinleyAdapterException(temp.str()); |
384 |
break; |
385 |
} |
386 |
break; |
387 |
case(ReducedDegreesOfFreedom): |
388 |
switch(target.getFunctionSpace().getTypeCode()) { |
389 |
case(ReducedDegreesOfFreedom): |
390 |
Finley_Assemble_CopyNodalData(mesh->Nodes,&(target.getDataC()),&(in.getDataC())); |
391 |
break; |
392 |
case(Elements): |
393 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&(in.getDataC()),&(target.getDataC())); |
394 |
break; |
395 |
case(FaceElements): |
396 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&(in.getDataC()),&(target.getDataC())); |
397 |
break; |
398 |
case(Points): |
399 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&(in.getDataC()),&(target.getDataC())); |
400 |
break; |
401 |
case(ContactElementsZero): |
402 |
case(ContactElementsOne): |
403 |
Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(in.getDataC()),&(target.getDataC())); |
404 |
break; |
405 |
case(Nodes): |
406 |
throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to mesh nodes."); |
407 |
break; |
408 |
case(DegreesOfFreedom): |
409 |
throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to degrees of freedom"); |
410 |
break; |
411 |
default: |
412 |
stringstream temp; |
413 |
temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode(); |
414 |
throw FinleyAdapterException(temp.str()); |
415 |
break; |
416 |
} |
417 |
break; |
418 |
default: |
419 |
stringstream temp; |
420 |
temp << "Error - Interpolation On Domain: Finley does not know anything about function space type %d" << in.getFunctionSpace().getTypeCode(); |
421 |
throw FinleyAdapterException(temp.str()); |
422 |
break; |
423 |
} |
424 |
checkFinleyError(); |
425 |
} |
426 |
|
427 |
// |
428 |
// copies the locations of sample points into x: |
429 |
// |
430 |
void MeshAdapter::setToX(escript::Data& arg) const |
431 |
{ |
432 |
const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain()); |
433 |
if (argDomain!=*this) |
434 |
throw FinleyAdapterException("Error - Illegal domain of data point locations"); |
435 |
Finley_Mesh* mesh=m_finleyMesh.get(); |
436 |
// in case of values node coordinates we can do the job directly: |
437 |
if (arg.getFunctionSpace().getTypeCode()==Nodes) { |
438 |
Finley_Assemble_NodeCoordinates(mesh->Nodes,&(arg.getDataC())); |
439 |
} else { |
440 |
escript::Data tmp_data=Vector(0.0,continuousFunction(asAbstractContinuousDomain()),true); |
441 |
Finley_Assemble_NodeCoordinates(mesh->Nodes,&(tmp_data.getDataC())); |
442 |
// this is then interpolated onto arg: |
443 |
interpolateOnDomain(arg,tmp_data); |
444 |
} |
445 |
checkFinleyError(); |
446 |
} |
447 |
|
448 |
// |
449 |
// return the normal vectors at the location of data points as a Data object: |
450 |
// |
451 |
void MeshAdapter::setToNormal(escript::Data& normal) const |
452 |
{ |
453 |
const MeshAdapter& normalDomain=dynamic_cast<const MeshAdapter&>(normal.getFunctionSpace().getDomain()); |
454 |
if (normalDomain!=*this) |
455 |
throw FinleyAdapterException("Error - Illegal domain of normal locations"); |
456 |
Finley_Mesh* mesh=m_finleyMesh.get(); |
457 |
switch(normal.getFunctionSpace().getTypeCode()) { |
458 |
case(Nodes): |
459 |
throw FinleyAdapterException("Error - Finley does not support surface normal vectors for nodes"); |
460 |
break; |
461 |
case(Elements): |
462 |
throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements"); |
463 |
break; |
464 |
case (FaceElements): |
465 |
Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&(normal.getDataC())); |
466 |
break; |
467 |
case(Points): |
468 |
throw FinleyAdapterException("Error - Finley does not support surface normal vectors for point elements"); |
469 |
break; |
470 |
case (ContactElementsOne): |
471 |
case (ContactElementsZero): |
472 |
Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&(normal.getDataC())); |
473 |
break; |
474 |
case(DegreesOfFreedom): |
475 |
throw FinleyAdapterException("Error - Finley does not support surface normal vectors for degrees of freedom."); |
476 |
break; |
477 |
case(ReducedDegreesOfFreedom): |
478 |
throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced degrees of freedom."); |
479 |
break; |
480 |
default: |
481 |
stringstream temp; |
482 |
temp << "Error - Normal Vectors: Finley does not know anything about function space type " << normal.getFunctionSpace().getTypeCode(); |
483 |
throw FinleyAdapterException(temp.str()); |
484 |
break; |
485 |
} |
486 |
checkFinleyError(); |
487 |
} |
488 |
|
489 |
// |
490 |
// interpolates data to other domain: |
491 |
// |
492 |
void MeshAdapter::interpolateACross(escript::Data& target,const escript::Data& source) const |
493 |
{ |
494 |
const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain()); |
495 |
if (targetDomain!=*this) |
496 |
throw FinleyAdapterException("Error - Illegal domain of interpolation target"); |
497 |
|
498 |
throw FinleyAdapterException("Error - Finley does not allow interpolation across domains yet."); |
499 |
} |
500 |
|
501 |
// |
502 |
// calculates the integral of a function defined of arg: |
503 |
// |
504 |
void MeshAdapter::setToIntegrals(std::vector<double>& integrals,const escript::Data& arg) const |
505 |
{ |
506 |
const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain()); |
507 |
if (argDomain!=*this) |
508 |
throw FinleyAdapterException("Error - Illegal domain of integration kernel"); |
509 |
|
510 |
Finley_Mesh* mesh=m_finleyMesh.get(); |
511 |
switch(arg.getFunctionSpace().getTypeCode()) { |
512 |
case(Nodes): |
513 |
throw FinleyAdapterException("Error - Integral of data on nodes is not supported."); |
514 |
break; |
515 |
case(Elements): |
516 |
Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&(arg.getDataC()),&integrals[0]); |
517 |
break; |
518 |
case(FaceElements): |
519 |
Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&(arg.getDataC()),&integrals[0]); |
520 |
break; |
521 |
case(Points): |
522 |
throw FinleyAdapterException("Error - Integral of data on points is not supported."); |
523 |
break; |
524 |
case(ContactElementsZero): |
525 |
Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&(arg.getDataC()),&integrals[0]); |
526 |
break; |
527 |
case(ContactElementsOne): |
528 |
Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&(arg.getDataC()),&integrals[0]); |
529 |
break; |
530 |
case(DegreesOfFreedom): |
531 |
throw FinleyAdapterException("Error - Integral of data on degrees of freedom is not supported."); |
532 |
break; |
533 |
case(ReducedDegreesOfFreedom): |
534 |
throw FinleyAdapterException("Error - Integral of data on reduced degrees of freedom is not supported."); |
535 |
break; |
536 |
default: |
537 |
stringstream temp; |
538 |
temp << "Error - Integrals: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode(); |
539 |
throw FinleyAdapterException(temp.str()); |
540 |
break; |
541 |
} |
542 |
checkFinleyError(); |
543 |
} |
544 |
|
545 |
// |
546 |
// calculates the gradient of arg: |
547 |
// |
548 |
void MeshAdapter::setToGradient(escript::Data& grad,const escript::Data& arg) const |
549 |
{ |
550 |
const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain()); |
551 |
if (argDomain!=*this) |
552 |
throw FinleyAdapterException("Error - Illegal domain of gradient argument"); |
553 |
const MeshAdapter& gradDomain=dynamic_cast<const MeshAdapter&>(grad.getFunctionSpace().getDomain()); |
554 |
if (gradDomain!=*this) |
555 |
throw FinleyAdapterException("Error - Illegal domain of gradient"); |
556 |
|
557 |
Finley_Mesh* mesh=m_finleyMesh.get(); |
558 |
switch(grad.getFunctionSpace().getTypeCode()) { |
559 |
case(Nodes): |
560 |
throw FinleyAdapterException("Error - Gradient at nodes is not supported."); |
561 |
break; |
562 |
case(Elements): |
563 |
Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&(grad.getDataC()),&(arg.getDataC())); |
564 |
break; |
565 |
case(FaceElements): |
566 |
Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&(grad.getDataC()),&(arg.getDataC())); |
567 |
break; |
568 |
case(Points): |
569 |
throw FinleyAdapterException("Error - Gradient at points is not supported."); |
570 |
break; |
571 |
case(ContactElementsZero): |
572 |
Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&(grad.getDataC()),&(arg.getDataC())); |
573 |
break; |
574 |
case(ContactElementsOne): |
575 |
Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&(grad.getDataC()),&(arg.getDataC())); |
576 |
break; |
577 |
case(DegreesOfFreedom): |
578 |
throw FinleyAdapterException("Error - Gradient at degrees of freedom is not supported."); |
579 |
break; |
580 |
case(ReducedDegreesOfFreedom): |
581 |
throw FinleyAdapterException("Error - Gradient at reduced degrees of freedom is not supported."); |
582 |
break; |
583 |
default: |
584 |
stringstream temp; |
585 |
temp << "Error - Gradient: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode(); |
586 |
throw FinleyAdapterException(temp.str()); |
587 |
break; |
588 |
} |
589 |
checkFinleyError(); |
590 |
} |
591 |
|
592 |
// |
593 |
// returns the size of elements: |
594 |
// |
595 |
void MeshAdapter::setToSize(escript::Data& size) const |
596 |
{ |
597 |
Finley_Mesh* mesh=m_finleyMesh.get(); |
598 |
escriptDataC tmp=size.getDataC(); |
599 |
switch(size.getFunctionSpace().getTypeCode()) { |
600 |
case(Nodes): |
601 |
throw FinleyAdapterException("Error - Size of nodes is not supported."); |
602 |
break; |
603 |
case(Elements): |
604 |
Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp); |
605 |
break; |
606 |
case(FaceElements): |
607 |
Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp); |
608 |
break; |
609 |
case(Points): |
610 |
throw FinleyAdapterException("Error - Size of point elements is not supported."); |
611 |
break; |
612 |
case(ContactElementsZero): |
613 |
case(ContactElementsOne): |
614 |
Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp); |
615 |
break; |
616 |
case(DegreesOfFreedom): |
617 |
throw FinleyAdapterException("Error - Size of degrees of freedom is not supported."); |
618 |
break; |
619 |
case(ReducedDegreesOfFreedom): |
620 |
throw FinleyAdapterException("Error - Size of reduced degrees of freedom is not supported."); |
621 |
break; |
622 |
default: |
623 |
stringstream temp; |
624 |
temp << "Error - Element size: Finley does not know anything about function space type " << size.getFunctionSpace().getTypeCode(); |
625 |
throw FinleyAdapterException(temp.str()); |
626 |
break; |
627 |
} |
628 |
checkFinleyError(); |
629 |
} |
630 |
|
631 |
// sets the location of nodes: |
632 |
void MeshAdapter::setNewX(const escript::Data& new_x) |
633 |
{ |
634 |
Finley_Mesh* mesh=m_finleyMesh.get(); |
635 |
const MeshAdapter& newDomain=dynamic_cast<const MeshAdapter&>(new_x.getFunctionSpace().getDomain()); |
636 |
if (newDomain!=*this) |
637 |
throw FinleyAdapterException("Error - Illegal domain of new point locations"); |
638 |
Finley_Mesh_setCoordinates(mesh,&(new_x.getDataC())); |
639 |
checkFinleyError(); |
640 |
} |
641 |
|
642 |
// saves a data array in openDX format: |
643 |
void MeshAdapter::saveDX(const std::string& filename,const boost::python::dict& arg) const |
644 |
{ |
645 |
int MAX_namelength=256; |
646 |
const int num_data=boost::python::extract<int>(arg.attr("__len__")()); |
647 |
char names[num_data][MAX_namelength]; |
648 |
char* c_names[num_data]; |
649 |
escriptDataC data[num_data]; |
650 |
escriptDataC* ptr_data[num_data]; |
651 |
|
652 |
boost::python::list keys=arg.keys(); |
653 |
for (int i=0;i<num_data;++i) { |
654 |
escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]); |
655 |
if (dynamic_cast<const MeshAdapter&>(d.getFunctionSpace().getDomain()) !=*this) |
656 |
throw FinleyAdapterException("Error in saveVTK: Data must be defined on same Domain"); |
657 |
data[i]=d.getDataC(); |
658 |
ptr_data[i]=&(data[i]); |
659 |
std::string n=boost::python::extract<std::string>(keys[i]); |
660 |
c_names[i]=&(names[i][0]); |
661 |
if (n.length()>MAX_namelength-1) { |
662 |
strncpy(c_names[i],n.c_str(),MAX_namelength-1); |
663 |
c_names[i][MAX_namelength-1]='\0'; |
664 |
} else { |
665 |
strcpy(c_names[i],n.c_str()); |
666 |
} |
667 |
} |
668 |
Finley_Mesh_saveDX(filename.c_str(),m_finleyMesh.get(),num_data,c_names,ptr_data); |
669 |
checkFinleyError(); |
670 |
return; |
671 |
} |
672 |
|
673 |
// saves a data array in openVTK format: |
674 |
void MeshAdapter::saveVTK(const std::string& filename,const boost::python::dict& arg) const |
675 |
{ |
676 |
int MAX_namelength=256; |
677 |
const int num_data=boost::python::extract<int>(arg.attr("__len__")()); |
678 |
char names[num_data][MAX_namelength]; |
679 |
char* c_names[num_data]; |
680 |
escriptDataC data[num_data]; |
681 |
escriptDataC* ptr_data[num_data]; |
682 |
|
683 |
boost::python::list keys=arg.keys(); |
684 |
for (int i=0;i<num_data;++i) { |
685 |
escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]); |
686 |
if (dynamic_cast<const MeshAdapter&>(d.getFunctionSpace().getDomain()) !=*this) |
687 |
throw FinleyAdapterException("Error in saveVTK: Data must be defined on same Domain"); |
688 |
data[i]=d.getDataC(); |
689 |
ptr_data[i]=&(data[i]); |
690 |
std::string n=boost::python::extract<std::string>(keys[i]); |
691 |
c_names[i]=&(names[i][0]); |
692 |
if (n.length()>MAX_namelength-1) { |
693 |
strncpy(c_names[i],n.c_str(),MAX_namelength-1); |
694 |
c_names[i][MAX_namelength-1]='\0'; |
695 |
} else { |
696 |
strcpy(c_names[i],n.c_str()); |
697 |
} |
698 |
} |
699 |
Finley_Mesh_saveVTK(filename.c_str(),m_finleyMesh.get(),num_data,c_names,ptr_data); |
700 |
checkFinleyError(); |
701 |
return; |
702 |
} |
703 |
|
704 |
|
705 |
// creates a SystemMatrixAdapter stiffness matrix an initializes it with zeros: |
706 |
SystemMatrixAdapter MeshAdapter::newSystemMatrix( |
707 |
const int row_blocksize, |
708 |
const escript::FunctionSpace& row_functionspace, |
709 |
const int column_blocksize, |
710 |
const escript::FunctionSpace& column_functionspace, |
711 |
const int type) const |
712 |
{ |
713 |
int reduceRowOrder=0; |
714 |
int reduceColOrder=0; |
715 |
// is the domain right? |
716 |
const MeshAdapter& row_domain=dynamic_cast<const MeshAdapter&>(row_functionspace.getDomain()); |
717 |
if (row_domain!=*this) |
718 |
throw FinleyAdapterException("Error - domain of row function space does not match the domain of matrix generator."); |
719 |
const MeshAdapter& col_domain=dynamic_cast<const MeshAdapter&>(column_functionspace.getDomain()); |
720 |
if (col_domain!=*this) |
721 |
throw FinleyAdapterException("Error - domain of columnn function space does not match the domain of matrix generator."); |
722 |
// is the function space type right |
723 |
if (row_functionspace.getTypeCode()==DegreesOfFreedom) { |
724 |
reduceRowOrder=0; |
725 |
} else if (row_functionspace.getTypeCode()==ReducedDegreesOfFreedom) { |
726 |
reduceRowOrder=1; |
727 |
} else { |
728 |
throw FinleyAdapterException("Error - illegal function space type for system matrix rows."); |
729 |
} |
730 |
if (column_functionspace.getTypeCode()==DegreesOfFreedom) { |
731 |
reduceColOrder=0; |
732 |
} else if (column_functionspace.getTypeCode()==ReducedDegreesOfFreedom) { |
733 |
reduceColOrder=1; |
734 |
} else { |
735 |
throw FinleyAdapterException("Error - illegal function space type for system matrix columns."); |
736 |
} |
737 |
// generate matrix: |
738 |
|
739 |
Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceRowOrder,reduceColOrder); |
740 |
checkFinleyError(); |
741 |
Paso_SystemMatrix* fsystemMatrix=Paso_SystemMatrix_alloc(type,fsystemMatrixPattern,row_blocksize,column_blocksize); |
742 |
checkPasoError(); |
743 |
Paso_SystemMatrixPattern_dealloc(fsystemMatrixPattern); |
744 |
return SystemMatrixAdapter(fsystemMatrix,row_blocksize,row_functionspace,column_blocksize,column_functionspace); |
745 |
} |
746 |
|
747 |
// |
748 |
// vtkObject MeshAdapter::createVtkObject() const |
749 |
// TODO: |
750 |
// |
751 |
|
752 |
// |
753 |
// returns true if data at the atom_type is considered as being cell centered: |
754 |
bool MeshAdapter::isCellOriented(int functionSpaceCode) const |
755 |
{ |
756 |
switch(functionSpaceCode) { |
757 |
case(Nodes): |
758 |
case(DegreesOfFreedom): |
759 |
case(ReducedDegreesOfFreedom): |
760 |
return false; |
761 |
break; |
762 |
case(Elements): |
763 |
case(FaceElements): |
764 |
case(Points): |
765 |
case(ContactElementsZero): |
766 |
case(ContactElementsOne): |
767 |
return true; |
768 |
break; |
769 |
default: |
770 |
stringstream temp; |
771 |
temp << "Error - Cell: Finley does not know anything about function space type " << functionSpaceCode; |
772 |
throw FinleyAdapterException(temp.str()); |
773 |
break; |
774 |
} |
775 |
checkFinleyError(); |
776 |
return false; |
777 |
} |
778 |
|
779 |
bool MeshAdapter::probeInterpolationOnDomain(int functionSpaceType_source,int functionSpaceType_target) const |
780 |
{ |
781 |
switch(functionSpaceType_source) { |
782 |
case(Nodes): |
783 |
switch(functionSpaceType_target) { |
784 |
case(Nodes): |
785 |
case(ReducedDegreesOfFreedom): |
786 |
case(DegreesOfFreedom): |
787 |
case(Elements): |
788 |
case(FaceElements): |
789 |
case(Points): |
790 |
case(ContactElementsZero): |
791 |
case(ContactElementsOne): |
792 |
return true; |
793 |
default: |
794 |
stringstream temp; |
795 |
temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target; |
796 |
throw FinleyAdapterException(temp.str()); |
797 |
} |
798 |
break; |
799 |
case(Elements): |
800 |
if (functionSpaceType_target==Elements) { |
801 |
return true; |
802 |
} else { |
803 |
return false; |
804 |
} |
805 |
case(FaceElements): |
806 |
if (functionSpaceType_target==FaceElements) { |
807 |
return true; |
808 |
} else { |
809 |
return false; |
810 |
} |
811 |
case(Points): |
812 |
if (functionSpaceType_target==Points) { |
813 |
return true; |
814 |
} else { |
815 |
return false; |
816 |
} |
817 |
case(ContactElementsZero): |
818 |
case(ContactElementsOne): |
819 |
if (functionSpaceType_target==ContactElementsZero || functionSpaceType_target==ContactElementsOne) { |
820 |
return true; |
821 |
} else { |
822 |
return false; |
823 |
} |
824 |
case(DegreesOfFreedom): |
825 |
switch(functionSpaceType_target) { |
826 |
case(ReducedDegreesOfFreedom): |
827 |
case(DegreesOfFreedom): |
828 |
case(Nodes): |
829 |
case(Elements): |
830 |
case(FaceElements): |
831 |
case(Points): |
832 |
case(ContactElementsZero): |
833 |
case(ContactElementsOne): |
834 |
return true; |
835 |
default: |
836 |
stringstream temp; |
837 |
temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target; |
838 |
throw FinleyAdapterException(temp.str()); |
839 |
} |
840 |
break; |
841 |
case(ReducedDegreesOfFreedom): |
842 |
switch(functionSpaceType_target) { |
843 |
case(ReducedDegreesOfFreedom): |
844 |
case(Elements): |
845 |
case(FaceElements): |
846 |
case(Points): |
847 |
case(ContactElementsZero): |
848 |
case(ContactElementsOne): |
849 |
return true; |
850 |
case(Nodes): |
851 |
case(DegreesOfFreedom): |
852 |
return false; |
853 |
default: |
854 |
stringstream temp; |
855 |
temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target; |
856 |
throw FinleyAdapterException(temp.str()); |
857 |
} |
858 |
break; |
859 |
default: |
860 |
stringstream temp; |
861 |
temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_source; |
862 |
throw FinleyAdapterException(temp.str()); |
863 |
break; |
864 |
} |
865 |
checkFinleyError(); |
866 |
return false; |
867 |
} |
868 |
|
869 |
bool MeshAdapter::probeInterpolationACross(int functionSpaceType_source,const AbstractDomain& targetDomain, int functionSpaceType_target) const |
870 |
{ |
871 |
return false; |
872 |
} |
873 |
|
874 |
bool MeshAdapter::operator==(const AbstractDomain& other) const |
875 |
{ |
876 |
const MeshAdapter* temp=dynamic_cast<const MeshAdapter*>(&other); |
877 |
if (temp!=0) { |
878 |
return (m_finleyMesh==temp->m_finleyMesh); |
879 |
} else { |
880 |
return false; |
881 |
} |
882 |
} |
883 |
|
884 |
bool MeshAdapter::operator!=(const AbstractDomain& other) const |
885 |
{ |
886 |
return !(operator==(other)); |
887 |
} |
888 |
|
889 |
int MeshAdapter::getSystemMatrixTypeId(const int solver, const int package, const bool symmetry) const |
890 |
{ |
891 |
int out=Paso_SystemMatrix_getSystemMatrixTypeId(SystemMatrixAdapter::mapOptionToPaso(solver),SystemMatrixAdapter::mapOptionToPaso(package),symmetry?1:0); |
892 |
checkPasoError(); |
893 |
return out; |
894 |
} |
895 |
|
896 |
escript::Data MeshAdapter::getX() const |
897 |
{ |
898 |
return continuousFunction(asAbstractContinuousDomain()).getX(); |
899 |
} |
900 |
|
901 |
escript::Data MeshAdapter::getNormal() const |
902 |
{ |
903 |
return functionOnBoundary(asAbstractContinuousDomain()).getNormal(); |
904 |
} |
905 |
|
906 |
escript::Data MeshAdapter::getSize() const |
907 |
{ |
908 |
return function(asAbstractContinuousDomain()).getSize(); |
909 |
} |
910 |
|
911 |
int MeshAdapter::getTagFromSampleNo(int functionSpaceType, int sampleNo) const |
912 |
{ |
913 |
int out=0; |
914 |
Finley_Mesh* mesh=m_finleyMesh.get(); |
915 |
switch (functionSpaceType) { |
916 |
case(Nodes): |
917 |
out=mesh->Nodes->Tag[sampleNo]; |
918 |
break; |
919 |
case(Elements): |
920 |
out=mesh->Elements->Tag[sampleNo]; |
921 |
break; |
922 |
case(FaceElements): |
923 |
out=mesh->FaceElements->Tag[sampleNo]; |
924 |
break; |
925 |
case(Points): |
926 |
out=mesh->Points->Tag[sampleNo]; |
927 |
break; |
928 |
case(ContactElementsZero): |
929 |
out=mesh->ContactElements->Tag[sampleNo]; |
930 |
break; |
931 |
case(ContactElementsOne): |
932 |
out=mesh->ContactElements->Tag[sampleNo]; |
933 |
break; |
934 |
case(DegreesOfFreedom): |
935 |
break; |
936 |
case(ReducedDegreesOfFreedom): |
937 |
break; |
938 |
default: |
939 |
stringstream temp; |
940 |
temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription(); |
941 |
throw FinleyAdapterException(temp.str()); |
942 |
break; |
943 |
} |
944 |
return out; |
945 |
} |
946 |
int MeshAdapter::getReferenceNoFromSampleNo(int functionSpaceType, int sampleNo) const |
947 |
{ |
948 |
int out=0,i; |
949 |
Finley_Mesh* mesh=m_finleyMesh.get(); |
950 |
switch (functionSpaceType) { |
951 |
case(Nodes): |
952 |
if (mesh->Nodes!=NULL) { |
953 |
out=mesh->Nodes->Id[sampleNo]; |
954 |
break; |
955 |
} |
956 |
case(Elements): |
957 |
out=mesh->Elements->Id[sampleNo]; |
958 |
break; |
959 |
case(FaceElements): |
960 |
out=mesh->FaceElements->Id[sampleNo]; |
961 |
break; |
962 |
case(Points): |
963 |
out=mesh->Points->Id[sampleNo]; |
964 |
break; |
965 |
case(ContactElementsZero): |
966 |
out=mesh->ContactElements->Id[sampleNo]; |
967 |
break; |
968 |
case(ContactElementsOne): |
969 |
out=mesh->ContactElements->Id[sampleNo]; |
970 |
break; |
971 |
case(DegreesOfFreedom): |
972 |
for (i=0;i<mesh->Nodes->numNodes; ++i) { |
973 |
if (mesh->Nodes->degreeOfFreedom[i]==sampleNo) { |
974 |
out=mesh->Nodes->Id[i]; |
975 |
break; |
976 |
} |
977 |
} |
978 |
break; |
979 |
case(ReducedDegreesOfFreedom): |
980 |
for (i=0;i<mesh->Nodes->numNodes; ++i) { |
981 |
if (mesh->Nodes->reducedDegreeOfFreedom[i]==sampleNo) { |
982 |
out=mesh->Nodes->Id[i]; |
983 |
break; |
984 |
} |
985 |
} |
986 |
break; |
987 |
default: |
988 |
stringstream temp; |
989 |
temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription(); |
990 |
throw FinleyAdapterException(temp.str()); |
991 |
break; |
992 |
} |
993 |
return out; |
994 |
} |
995 |
|
996 |
} // end of namespace |