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revision 2409 by jfenwick, Tue May 5 06:22:11 2009 UTC revision 2967 by caltinay, Wed Mar 3 03:50:46 2010 UTC
# Line 1  Line 1 
1    
2  ########################################################  ########################################################
3  #  #
4  # Copyright (c) 2003-2008 by University of Queensland  # Copyright (c) 2003-2010 by University of Queensland
5  # Earth Systems Science Computational Center (ESSCC)  # Earth Systems Science Computational Center (ESSCC)
6  # http://www.uq.edu.au/esscc  # http://www.uq.edu.au/esscc
7  #  #
# Line 16  EnsureSConsVersion(0,96,91) Line 16  EnsureSConsVersion(0,96,91)
16  EnsurePythonVersion(2,3)  EnsurePythonVersion(2,3)
17    
18  import sys, os, re, socket, platform, stat  import sys, os, re, socket, platform, stat
19    # For copy()
20    import shutil
21    
22  # Add our extensions  # Add our extensions
23  if os.path.isdir('scons'): sys.path.append('scons')  if os.path.isdir('scons'): sys.path.append('scons')
# Line 33  IS_WINDOWS_PLATFORM = (os.name== "nt") Line 35  IS_WINDOWS_PLATFORM = (os.name== "nt")
35    
36  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)
37    
38    #Holds names of variables from the calling environment which need to be passed
39    #to tools
40    env_export=[]
41    
42  #Determine where to read options from use:  #Determine where to read options from use:
43  #1. command line  #1. command line
44  #2. scons/<hostname>_options.py  #2. scons/<hostname>_options.py
45  #3. name as part of a cluster  #3. name as part of a cluster
46  options_file=ARGUMENTS.get('options_file', None)  options_file=ARGUMENTS.get('options_file', None)
47    effective_hostname=socket.gethostname().split('.')[0]
48  if not options_file:  if not options_file:
49    hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])    mangledhostname = re.sub("[^0-9a-zA-Z]", "_", effective_hostname)
50    options_file = os.path.join("scons",hostname+"_options.py")    options_file = os.path.join("scons",mangledhostname+"_options.py")
51    #If there is no options file with that name see if there is a substitute    #If there is no options file with that name see if there is a substitute
52    if not os.path.isfile(options_file):    if not os.path.isfile(options_file):
53      tmp = scons_extensions.effectiveName(hostname)      effective_hostname = scons_extensions.effectiveName(effective_hostname)
54      options_file = os.path.join("scons",tmp+"_options.py")      mangledhostname = re.sub("[^0-9a-zA-Z]", "_", effective_hostname)
55        options_file = os.path.join("scons",mangledhostname+"_options.py")
56    
57  if not os.path.isfile(options_file):  if not os.path.isfile(options_file):
58    print "Options file not found (expected '%s')" % options_file    print "Options file not found (expected '%s')" % options_file
# Line 52  if not os.path.isfile(options_file): Line 60  if not os.path.isfile(options_file):
60  else:  else:
61    print "Options file is", options_file    print "Options file is", options_file
62    
63  # Load options file and command-line arguments  #Does our scons support the newer Variables class or do we need to use Options?
64  opts = Options(options_file, ARGUMENTS)  
65    try:
66       dummyvar=Variables
67       opts = Variables(options_file, ARGUMENTS)
68       adder = opts.AddVariables
69    except:
70       opts = Options(options_file, ARGUMENTS)
71       adder = opts.AddOptions
72       BoolVariable = BoolOption
73    
74  ############ Load build options ################################  ############ Load build options ################################
75    
76  opts.AddOptions(  adder(
77    #opts.AddOptions(
78  # Where to install esys stuff  # Where to install esys stuff
79    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),
80    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),
# Line 65  opts.AddOptions( Line 82  opts.AddOptions(
82    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),
83    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),
84  # Compilation options  # Compilation options
85    BoolOption('dodebug', 'For backwards compatibility', 'no'),    BoolVariable('dodebug', 'For backwards compatibility', 'no'),
86    BoolOption('usedebug', 'Do you want a debug build?', 'no'),    BoolVariable('usedebug', 'Do you want a debug build?', 'no'),
87    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),    BoolVariable('usevtk', 'Do you want to use VTK?', 'yes'),
88    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),
89      ('cc', 'path to C compiler', 'DEFAULT'),
90      ('cxx', 'path to C++ compiler', 'DEFAULT'),
91    ('win_cc_name', 'windows C compiler name if needed', 'msvc'),    ('win_cc_name', 'windows C compiler name if needed', 'msvc'),
92    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below
93    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),    ('cc_flags', 'C/C++ compiler flags to use', '-DEFAULT_1'),
94    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),    ('cc_optim', 'C/C++ optimization flags to use', '-DEFAULT_2'),
95    ('cc_debug', 'C compiler debug flags to use', '-DEFAULT_3'),    ('cc_debug', 'C/C++ debug flags to use', '-DEFAULT_3'),
96    ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),    ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),
97    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),
98    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),
99    ('cc_extra', 'Extra C/C++ flags', ''),    ('cc_extra', 'Extra C compiler flags', ''),
100      ('cxx_extra', 'Extra C++ compiler flags', ''),
101    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
102    ('sys_libs', 'System libraries to link with', []),    ('sys_libs', 'System libraries to link with', []),
103    ('ar_flags', 'Static library archiver flags to use', ''),    ('ar_flags', 'Static library archiver flags to use', ''),
104    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'no'),    BoolVariable('useopenmp', 'Compile parallel version using OpenMP', 'no'),
105    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),    BoolVariable('usepedantic', 'Compile with -pedantic if using gcc', 'no'),
106    BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),    BoolVariable('usewarnings','Compile with warnings as errors if using gcc','yes'),
107    ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),    ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),
108      ('forcecollres','for testing use only - set the default value for force resolving collective ops','leave_alone'),
109  # Python  # Python
110    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),
111    ('python_lib_path', 'Path to Python libs', usr_lib),    ('python_lib_path', 'Path to Python libs', usr_lib),
# Line 95  opts.AddOptions( Line 116  opts.AddOptions(
116    ('boost_lib_path', 'Path to Boost libs', usr_lib),    ('boost_lib_path', 'Path to Boost libs', usr_lib),
117    ('boost_libs', 'Boost libraries to link with', ['boost_python']),    ('boost_libs', 'Boost libraries to link with', ['boost_python']),
118  # NetCDF  # NetCDF
119    BoolOption('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),    BoolVariable('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),
120    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),
121    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),
122    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),
123  # MPI  # MPI
124    BoolOption('useMPI', 'For backwards compatibility', 'no'),    BoolVariable('useMPI', 'For backwards compatibility', 'no'),
125    BoolOption('usempi', 'Compile parallel version using MPI', 'no'),    BoolVariable('usempi', 'Compile parallel version using MPI', 'no'),
126    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),
127    ('mpi_path', 'Path to MPI includes', '/usr/include'),    ('mpi_path', 'Path to MPI includes', '/usr/include'),
128    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),
129    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),
130    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', []),
131    ('mpi_flavour','Type of MPI execution environment','none'),    ('mpi_flavour','Type of MPI execution environment','none'),
132  # ParMETIS  # ParMETIS
133    BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),    BoolVariable('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),
134    ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),    ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),
135    ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),    ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),
136    ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),    ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),
137  # PAPI  # PAPI
138    BoolOption('usepapi', 'switch on/off the usage of PAPI', 'no'),    BoolVariable('usepapi', 'switch on/off the usage of PAPI', 'no'),
139    ('papi_path', 'Path to PAPI includes', '/usr/include'),    ('papi_path', 'Path to PAPI includes', '/usr/include'),
140    ('papi_lib_path', 'Path to PAPI libs', usr_lib),    ('papi_lib_path', 'Path to PAPI libs', usr_lib),
141    ('papi_libs', 'PAPI libraries to link with', ['papi']),    ('papi_libs', 'PAPI libraries to link with', ['papi']),
142    BoolOption('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),    BoolVariable('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),
143  # MKL  # MKL
144    BoolOption('usemkl', 'switch on/off the usage of MKL', 'no'),    BoolVariable('usemkl', 'switch on/off the usage of MKL', 'no'),
145    ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),    ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),
146    ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),    ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),
147    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),
148  # UMFPACK  # UMFPACK
149    BoolOption('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),    BoolVariable('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),
150    ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),    ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),
151    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),
152    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),
153    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),
154  # Silo  # Silo
155    BoolOption('usesilo', 'switch on/off the usage of Silo', 'yes'),    BoolVariable('usesilo', 'switch on/off the usage of Silo', 'yes'),
156    ('silo_path', 'Path to Silo includes', '/usr/include'),    ('silo_path', 'Path to Silo includes', '/usr/include'),
157    ('silo_lib_path', 'Path to Silo libs', usr_lib),    ('silo_lib_path', 'Path to Silo libs', usr_lib),
158    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
# Line 143  opts.AddOptions( Line 164  opts.AddOptions(
164    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),
165    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    ('blas_lib_path', 'Path to BLAS libs', usr_lib),
166    ('blas_libs', 'BLAS libraries to link with', ['blas']),    ('blas_libs', 'BLAS libraries to link with', ['blas']),
167    #Lapack options
168      BoolVariable('uselapack','switch on/off use of Lapack','no'),
169      ('lapack_path', 'Path to Lapack includes','/usr/include'),
170      ('lapack_lib_path', 'Path to Lapack libs', usr_lib),
171      ('lapack_libs', 'Lapack libraries to link with', []),
172      ('lapack_type', '{clapack,mkl}','clapack'),
173  # An option for specifying the compiler tools set (see windows branch).  # An option for specifying the compiler tools set (see windows branch).
174    ('tools_names', 'allow control over the tools in the env setup', ['intelc']),    ('tools_names', 'allow control over the tools in the env setup', ['intelc']),
175  # finer control over library building, intel aggressive global optimisation  # finer control over library building, intel aggressive global optimisation
176  # works with dynamic libraries on windows.  # works with dynamic libraries on windows.
177    ('share_esysUtils', 'control static or dynamic esysUtils lib', False),    ('share_esysUtils', 'control static or dynamic esysUtils lib', False),
178    ('share_paso', 'control static or dynamic paso lib', False)    ('share_paso', 'control static or dynamic paso lib', False),
179      ('env_export','Environment variables to be passed to children',[]),
180    #To enable passing function pointers through python
181      BoolVariable('iknowwhatimdoing','allow nonstandard C',False)
182  )  )
183    
184    
185    
186  ############ Specify which compilers to use ####################  ############ Specify which compilers to use ####################
187    
188  # intelc uses regular expressions improperly and emits a warning about  # intelc uses regular expressions improperly and emits a warning about
# Line 161  if IS_WINDOWS_PLATFORM: Line 193  if IS_WINDOWS_PLATFORM:
193        env = Environment(tools = ['default'] + env['tools_names'],        env = Environment(tools = ['default'] + env['tools_names'],
194                          options = opts)                          options = opts)
195  else:  else:
196     if socket.gethostname().split('.')[0] == 'service0':     if effective_hostname == 'service0':
197        env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default', 'intelc'], options = opts)
198     elif os.uname()[4]=='ia64':     elif os.uname()[4]=='ia64':
199        env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default', 'intelc'], options = opts)
# Line 169  else: Line 201  else:
201           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)
202     else:     else:
203        env = Environment(tools = ['default'], options = opts)        env = Environment(tools = ['default'], options = opts)
204    
205    # Override compiler choice if provided
206    if env['cc'] != 'DEFAULT': env['CC']=env['cc']
207    if env['cxx'] != 'DEFAULT': env['CXX']=env['cxx']
208    
209  Help(opts.GenerateHelpText(env))  Help(opts.GenerateHelpText(env))
210    
211    ############ Make sure target directories exist ################
212    
213    if not os.path.isdir(env['bininstall']):
214        os.makedirs(env['bininstall'])
215    if not os.path.isdir(env['libinstall']):
216        os.makedirs(env['libinstall'])
217    if not os.path.isdir(env['pyinstall']):
218        os.makedirs(env['pyinstall'])
219    
220    ########## Copy required environment vars ######################
221    
222    for i in env['env_export']:
223       env.Append(ENV = {i:os.environ[i]})
224    
225  ############ Fill in compiler options if not set above #########  ############ Fill in compiler options if not set above #########
226    
227  # Backwards compatibility: allow dodebug=yes and useMPI=yes  # Backwards compatibility: allow dodebug=yes and useMPI=yes
# Line 182  if env['useMPI']: env['usempi'] = 1 Line 233  if env['useMPI']: env['usempi'] = 1
233    
234  sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.  sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.
235    
236    cc_flags = ""
237    cc_optim = ""
238    cc_debug = ""
239    omp_optim = ""
240    omp_debug = ""
241    omp_libs = []
242    
243  if env["CC"] == "icc":  if env["CC"] == "icc":
244    # Intel compilers    # Intel compilers
245    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"    cc_flags      = "-std=c99 -fPIC -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
246    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"
247    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
248    omp_optim     = "-openmp -openmp_report0"    omp_optim     = "-openmp -openmp_report0"
# Line 193  if env["CC"] == "icc": Line 251  if env["CC"] == "icc":
251    pedantic      = ""    pedantic      = ""
252    fatalwarning      = ""        # Switch to turn warnings into errors    fatalwarning      = ""        # Switch to turn warnings into errors
253    sysheaderopt      = ""    sysheaderopt      = ""
254  elif env["CC"] == "gcc":  elif env["CC"][:3] == "gcc":
255    # GNU C on any system    # GNU C on any system
256    cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"    cc_flags      = "-pedantic -Wall -fPIC -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"
257  #the long long warning occurs on the Mac  #the long long warning occurs on the Mac
258    cc_optim      = "-O3"    cc_optim      = "-O3"
259    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
260    omp_optim     = "-fopenmp"    omp_optim     = "-fopenmp"
261    omp_debug     = "-fopenmp"    omp_debug     = "-fopenmp"
262    omp_libs      = ['gomp']    omp_libs      = []
263    pedantic      = "-pedantic-errors -Wno-long-long"    pedantic      = "-pedantic-errors -Wno-long-long"
264    fatalwarning      = "-Werror"    fatalwarning      = "-Werror"
265    sysheaderopt      = "-isystem "    sysheaderopt      = "-isystem "
# Line 234  if env["omp_libs"] == "-DEFAULT_6": env[ Line 292  if env["omp_libs"] == "-DEFAULT_6": env[
292  #set up the autolazy values  #set up the autolazy values
293  if env['forcelazy']    != "leave_alone":  if env['forcelazy']    != "leave_alone":
294    if env['forcelazy'] == 'on':    if env['forcelazy'] == 'on':
295      env.Append(CPPDEFINES='FAUTOLAZYON')      env.Append(CPPDEFINES=['FAUTOLAZYON'])
296    else:    else:
297       if env['forcelazy'] == 'off':       if env['forcelazy'] == 'off':
298      env.Append(CPPDEFINES='FAUTOLAZYOFF')      env.Append(CPPDEFINES=['FAUTOLAZYOFF'])
299    
300    #set up the colective resolve values
301    if env['forcecollres']    != "leave_alone":
302      print env['forcecollres']
303      if env['forcecollres'] == 'on':
304        env.Append(CPPDEFINES=['FRESCOLLECTON'])
305      else:
306         if env['forcecollres'] == 'off':
307        env.Append(CPPDEFINES=['FRESCOLLECTOFF'])
308    
309    
310    if env['iknowwhatimdoing']:
311        env.Append(CPPDEFINES=['IKNOWWHATIMDOING'])
312    
313  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty
314  if not env["useopenmp"]:  if not env["useopenmp"]:
# Line 247  if not env["useopenmp"]: Line 318  if not env["useopenmp"]:
318    
319  if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0  if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0
320    
321    # Windows doesn't use LD_LIBRARY_PATH but PATH instead
322    if IS_WINDOWS_PLATFORM:
323        LD_LIBRARY_PATH_KEY='PATH'
324        env['ENV']['LD_LIBRARY_PATH']=''
325    else:
326        LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'
327  ############ Copy environment variables into scons env #########  ############ Copy environment variables into scons env #########
328    
329  try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']  try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']
# Line 256  try: env['ENV']['ESCRIPT_NUM_THREADS'] = Line 333  try: env['ENV']['ESCRIPT_NUM_THREADS'] =
333  except KeyError: pass  except KeyError: pass
334    
335  try: env['ENV']['ESCRIPT_NUM_PROCS'] = os.environ['ESCRIPT_NUM_PROCS']  try: env['ENV']['ESCRIPT_NUM_PROCS'] = os.environ['ESCRIPT_NUM_PROCS']
336  except KeyError: pass  except KeyError: env['ENV']['ESCRIPT_NUM_PROCS']=1
337    
338  try: env['ENV']['ESCRIPT_NUM_NODES'] = os.environ['ESCRIPT_NUM_NODES']  try: env['ENV']['ESCRIPT_NUM_NODES'] = os.environ['ESCRIPT_NUM_NODES']
339  except KeyError: pass  except KeyError: env['ENV']['ESCRIPT_NUM_NODES']=1
340    
341  try: env['ENV']['ESCRIPT_HOSTFILE'] = os.environ['ESCRIPT_HOSTFILE']  try: env['ENV']['ESCRIPT_HOSTFILE'] = os.environ['ESCRIPT_HOSTFILE']
342  except KeyError: pass  except KeyError: pass
# Line 276  except KeyError: pass Line 353  except KeyError: pass
353  try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']  try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']
354  except KeyError: pass  except KeyError: pass
355    
356  try: env['ENV']['LD_LIBRARY_PATH'] = os.environ['LD_LIBRARY_PATH']  try: env.PrependENVPath(LD_LIBRARY_PATH_KEY,os.environ['LD_LIBRARY_PATH'])
357  except KeyError: pass  except KeyError: pass
358    
359  try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']  try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']
# Line 292  try: env['ENV']['HOME'] = os.environ['HO Line 369  try: env['ENV']['HOME'] = os.environ['HO
369  except KeyError: pass  except KeyError: pass
370    
371  # Configure for test suite  # Configure for test suite
 env.PrependENVPath('PYTHONPATH', prefix)  
 env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
372    
373    
374    env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
375    env.PrependENVPath('PYTHONPATH', prefix)
376  env['ENV']['ESCRIPT_ROOT'] = prefix  env['ENV']['ESCRIPT_ROOT'] = prefix
377    
378  ############ Set up paths for Configure() ######################  ############ Set up paths for Configure() ######################
# Line 311  env.Append(CPPPATH     = [Dir('include')]) Line 389  env.Append(CPPPATH     = [Dir('include')])
389  # Add cc option -L<Escript>/trunk/lib  # Add cc option -L<Escript>/trunk/lib
390  env.Append(LIBPATH      = [Dir(env['libinstall'])])  env.Append(LIBPATH      = [Dir(env['libinstall'])])
391    
392  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])  if env['cc_extra'] != '': env.Append(CFLAGS = env['cc_extra'])
393    if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
394  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])
395    
396  if env['usepedantic']: env.Append(CCFLAGS = pedantic)  if env['usepedantic']: env.Append(CCFLAGS = pedantic)
# Line 340  except: Line 419  except:
419  if global_revision == "": global_revision="-2"  if global_revision == "": global_revision="-2"
420  env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])  env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])
421    
422  ############ numarray (required) ###############################  ############ numpy (required) ###############################
423    
424  try:  try:
425    from numarray import identity    from numpy import identity
426  except ImportError:  except ImportError:
427    print "Cannot import numarray, you need to set your PYTHONPATH"    print "Cannot import numpy, you need to set your PYTHONPATH"
428    sys.exit(1)    sys.exit(1)
429    
430  ############ C compiler (required) #############################  ############ C compiler (required) #############################
# Line 372  else: Line 451  else:
451  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])
452  conf.env.AppendUnique(LIBS      = [env['python_libs']])  conf.env.AppendUnique(LIBS      = [env['python_libs']])
453    
 conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs  
454  conf.env.PrependENVPath('PYTHONPATH', prefix)  conf.env.PrependENVPath('PYTHONPATH', prefix)
455  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['python_lib_path'])    # The wrapper script needs to find these libs
456    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
457    
458  if not conf.CheckCHeader('Python.h'):  if not conf.CheckCHeader('Python.h'):
459    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])
# Line 397  else: Line 476  else:
476  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])
477  conf.env.AppendUnique(LIBS      = [env['boost_libs']])  conf.env.AppendUnique(LIBS      = [env['boost_libs']])
478    
479  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs  conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['boost_lib_path']) # The wrapper script needs to find these libs
480  #ensure that our path entries remain at the front  #ensure that our path entries remain at the front
481  conf.env.PrependENVPath('PYTHONPATH', prefix)  conf.env.PrependENVPath('PYTHONPATH', prefix)
482  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
483    
 if not conf.CheckCXXHeader('boost/python.hpp'):  
   print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])  
   sys.exit(1)  
484    
485  if not conf.CheckFunc('PyObject_SetAttr'):  #Yep we still cant figure this one out. - working on it.
486    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])  if not IS_WINDOWS_PLATFORM:
487    sys.exit(1)    if not conf.CheckCXXHeader('boost/python.hpp'):
488        print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])
489        sys.exit(1)
490    
491      if not conf.CheckFunc('PyObject_SetAttr'):
492        print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])
493        sys.exit(1)
494    
495    
496  # Commit changes to environment  # Commit changes to environment
497  env = conf.Finish()  env = conf.Finish()
# Line 434  if env['usenetcdf']: Line 517  if env['usenetcdf']:
517    conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])    conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])
518    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])
519    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])
520    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['netCDF_lib_path'])  # The wrapper script needs to find these libs
521    #ensure that our path entries remain at the front    #ensure that our path entries remain at the front
522    conf.env.PrependENVPath('PYTHONPATH', prefix)    conf.env.PrependENVPath('PYTHONPATH', prefix)
523    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
524    
525  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0
526  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0
# Line 458  if env['usepapi']: Line 541  if env['usepapi']:
541    conf.env.AppendUnique(CPPPATH = [env['papi_path']])    conf.env.AppendUnique(CPPPATH = [env['papi_path']])
542    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])
543    conf.env.AppendUnique(LIBS    = [env['papi_libs']])    conf.env.AppendUnique(LIBS    = [env['papi_libs']])
544    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['papi_lib_path'])    # The wrapper script needs to find these libs
545    #ensure that our path entries remain at the front    #ensure that our path entries remain at the front
546    conf.env.PrependENVPath('PYTHONPATH', prefix)    conf.env.PrependENVPath('PYTHONPATH', prefix)
547    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
548    
549  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0
550  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0
# Line 482  if env['usemkl']: Line 565  if env['usemkl']:
565    conf.env.AppendUnique(CPPPATH = [env['mkl_path']])    conf.env.AppendUnique(CPPPATH = [env['mkl_path']])
566    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])
567    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])
568    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['mkl_lib_path']) # The wrapper script needs to find these libs
569    #ensure that our path entries remain at the front    #ensure that our path entries remain at the front
570    conf.env.PrependENVPath('PYTHONPATH', prefix)    conf.env.PrependENVPath('PYTHONPATH', prefix)
571    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
572    
573  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0
574  if env['usemkl'] and not conf.CheckFunc('pardiso'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckFunc('pardiso'): env['usemkl'] = 0
575    
576    
577  # Add MKL to environment env if it was found  # Add MKL to environment env if it was found
578  if env['usemkl']:  if env['usemkl']:
579    env = conf.Finish()    env = conf.Finish()
# Line 513  if env['useumfpack']: Line 597  if env['useumfpack']:
597    conf.env.AppendUnique(CPPPATH = [env['blas_path']])    conf.env.AppendUnique(CPPPATH = [env['blas_path']])
598    conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])
599    conf.env.AppendUnique(LIBS    = [env['blas_libs']])    conf.env.AppendUnique(LIBS    = [env['blas_libs']])
600    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['umf_lib_path']) # The wrapper script needs to find these libs
601    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['amd_lib_path']) # The wrapper script needs to find these libs
602    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['blas_lib_path'])    # The wrapper script needs to find these libs
603    #ensure that our path entries remain at the front    #ensure that our path entries remain at the front
604    conf.env.PrependENVPath('PYTHONPATH', prefix)    conf.env.PrependENVPath('PYTHONPATH', prefix)
605    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
606    
 if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  
607  if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0
608    if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0
609  # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?  # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?
610    
611  # Add UMFPACK to environment env if it was found  # Add UMFPACK to environment env if it was found
# Line 544  if env['usesilo']: Line 628  if env['usesilo']:
628    
629  # Add the path to Silo to environment env if it was found.  # Add the path to Silo to environment env if it was found.
630  # Note that we do not add the libs since they are only needed for the  # Note that we do not add the libs since they are only needed for the
631  # escriptreader library and tools.  # escriptexport library and tools.
632  if env['usesilo']:  if env['usesilo']:
633    env.AppendUnique(CPPPATH = [env['silo_path']])    env.AppendUnique(CPPPATH = [env['silo_path']])
634    env.AppendUnique(LIBPATH = [env['silo_lib_path']])    env.AppendUnique(LIBPATH = [env['silo_lib_path']])
635    env.Append(CPPDEFINES = ['HAVE_SILO'])  
636    ########### Lapack (optional) ##################################
637    
638    if env['uselapack']:
639        env.AppendUnique(CPPDEFINES='USE_LAPACK')
640        env.AppendUnique(CPPPATH = [env['lapack_path']])
641        env.AppendUnique(LIBPATH =[env['lapack_lib_path']])
642    
643        env.Append(LIBPATH = '/usr/lib/atlas')
644        env.Append(LIBS = [env['lapack_libs']])
645        if env['lapack_type']=='mkl':
646           if not env['usemkl']:
647            env['uselapack']=0
648            print "mkl_lapack requires mkl"
649           else:
650            env.AppendUnique(CPPDEFINES='MKL_LAPACK')
651          
652    
653  ############ Add the compiler flags ############################  ############ Add the compiler flags ############################
654    
# Line 594  if env_mpi['usempi']: Line 694  if env_mpi['usempi']:
694    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])
695    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])
696    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])
697    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['mpi_lib_path']) # The wrapper script needs to find these libs
698    #ensure that our path entries remain at the front    #ensure that our path entries remain at the front
699    conf.env.PrependENVPath('PYTHONPATH', prefix)    conf.env.PrependENVPath('PYTHONPATH', prefix)
700    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
701    
702  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0
703  # if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  # if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0
# Line 611  else: Line 711  else:
711    
712  env['usempi'] = env_mpi['usempi']  env['usempi'] = env_mpi['usempi']
713    
   
714  ############ ParMETIS (optional) ###############################  ############ ParMETIS (optional) ###############################
715    
716  # Start a new configure environment that reflects what we've already found  # Start a new configure environment that reflects what we've already found
# Line 623  if env_mpi['useparmetis']: Line 722  if env_mpi['useparmetis']:
722    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])
723    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])
724    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])
725    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['parmetis_lib_path'])    # The wrapper script needs to find these libs
726    #ensure that our path entries remain at the front    #ensure that our path entries remain at the front
727    conf.env.PrependENVPath('PYTHONPATH', prefix)    conf.env.PrependENVPath('PYTHONPATH', prefix)
728    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
729    
730  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0
731  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0
# Line 640  else: Line 739  else:
739    
740  env['useparmetis'] = env_mpi['useparmetis']  env['useparmetis'] = env_mpi['useparmetis']
741    
 ############ Now we switch on Warnings as errors ###############  
   
 #this needs to be done after configuration because the scons test files have warnings in them  
   
 if ((fatalwarning != "") and (env['usewarnings'])):  
   env.Append(CCFLAGS        = fatalwarning)  
   env_mpi.Append(CCFLAGS        = fatalwarning)  
   
742  ############ Summarize our environment #########################  ############ Summarize our environment #########################
743    
744  print ""  print ""
745  print "Summary of configuration (see ./config.log for information)"  print "Summary of configuration (see ./config.log for information)"
746  print " Using python libraries"  print " Using python libraries"
747  print " Using numarray"  print " Using numpy"
748  print " Using boost"  print " Using boost"
749  if env['usenetcdf']: print "    Using NetCDF"  if env['usenetcdf']: print "    Using NetCDF"
750  else: print "   Not using NetCDF"  else: print "   Not using NetCDF"
# Line 673  if env['useparmetis']: print " Using Par Line 764  if env['useparmetis']: print " Using Par
764  else: print "   Not using ParMETIS (requires MPI)"  else: print "   Not using ParMETIS (requires MPI)"
765  if env['usepapi']: print "  Using PAPI"  if env['usepapi']: print "  Using PAPI"
766  else: print "   Not using PAPI"  else: print "   Not using PAPI"
767    if env['uselapack']: print "    Using Lapack"
768    else: print "   Not using Lapack"
769  if env['usedebug']: print " Compiling for debug"  if env['usedebug']: print " Compiling for debug"
770  else: print "   Not compiling for debug"  else: print "   Not compiling for debug"
771  print " Installing in", prefix  print " Installing in", prefix
# Line 692  if not env['usempi']: Execute(Delete(os. Line 785  if not env['usempi']: Execute(Delete(os.
785    
786  ############ Build the subdirectories ##########################  ############ Build the subdirectories ##########################
787    
788    if env['usepedantic']: env_mpi.Append(CCFLAGS = pedantic)
789    
790    
791  from grouptest import *  from grouptest import *
792    
793  TestGroups=[]  TestGroups=[]
794    
795    dodgy_env=clone_env(env_mpi)    # Environment without pedantic options
796    
797    ############ Now we switch on Warnings as errors ###############
798    
799    #this needs to be done after configuration because the scons test files have warnings in them
800    
801    if ((fatalwarning != "") and (env['usewarnings'])):
802      env.Append(CCFLAGS        = fatalwarning)
803      env_mpi.Append(CCFLAGS        = fatalwarning)
804    
805    
806  Export(  Export(
807    ["env",    ["env",
808     "env_mpi",     "env_mpi",
809     "clone_env",     "clone_env",
810       "dodgy_env",
811     "IS_WINDOWS_PLATFORM",     "IS_WINDOWS_PLATFORM",
812     "TestGroups"     "TestGroups"
813     ]     ]
814    )    )
815    
816  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
817  env.SConscript(dirs = ['tools/libescriptreader/src'], build_dir='build/$PLATFORM/tools/libescriptreader', duplicate=0)  env.SConscript(dirs = ['tools/escriptconvert'], build_dir='build/$PLATFORM/tools/escriptconvert', duplicate=0)
818  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)
819    env.SConscript(dirs = ['dataexporter/src'], build_dir='build/$PLATFORM/dataexporter', duplicate=0)
820  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)
821  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)
822  env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)
# Line 739  env.Alias('remember_options', remember_l Line 848  env.Alias('remember_options', remember_l
848  ############### Record python interpreter version ##############  ############### Record python interpreter version ##############
849    
850  if not IS_WINDOWS_PLATFORM:  if not IS_WINDOWS_PLATFORM:
851    
852    versionstring="Python "+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])    versionstring="Python "+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])
853      if sys.version_info[4] >0 : versionstring+="rc%s"%sys.version_info[4]
854    os.system("echo "+versionstring+" > "+os.path.join(env['libinstall'],"pyversion"))    os.system("echo "+versionstring+" > "+os.path.join(env['libinstall'],"pyversion"))
855    
856  ############## Populate the buildvars file #####################  ############## Populate the buildvars file #####################
# Line 776  else: Line 887  else:
887      out+="n"      out+="n"
888  buildvars.write(out+"\n")  buildvars.write(out+"\n")
889  buildvars.write("mpi_flavour="+env['mpi_flavour']+'\n')  buildvars.write("mpi_flavour="+env['mpi_flavour']+'\n')
890    out="lapack="
891    if env['uselapack']:
892       out+="y"
893    else:
894       out+="n"
895    out+="\nsilo="
896    if env['usesilo']:
897       out+="y"
898    else:
899       out+="n"
900    buildvars.write(out+"\n")
901  buildvars.close()  buildvars.close()
902    
903    
# Line 792  env.Alias('install_esysUtils', ['build_e Line 913  env.Alias('install_esysUtils', ['build_e
913  env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])  env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])
914  env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])  env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])
915    
916    env.Alias('build_dataexporter', ['target_install_escriptexport_headers', 'target_escriptexport_so', 'target_escriptexportcpp_so'])
917    env.Alias('install_dataexporter', ['build_dataexporter', 'target_install_escriptexport_so', 'target_install_escriptexportcpp_so', 'target_install_dataexporter_py'])
918    
919    env.Alias('build_escriptreader', ['target_install_escriptexport_headers', 'target_escriptreader_a'])
920    env.Alias('install_escriptreader', ['build_escriptreader', 'target_install_escriptreader_a'])
921    
922  env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])  env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])
923  env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])  env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])
924    
# Line 802  env.Alias('install_finley', ['build_finl Line 929  env.Alias('install_finley', ['build_finl
929  build_all_list = []  build_all_list = []
930  build_all_list += ['build_esysUtils']  build_all_list += ['build_esysUtils']
931  build_all_list += ['build_paso']  build_all_list += ['build_paso']
932    build_all_list += ['build_dataexporter']
933  build_all_list += ['build_escript']  build_all_list += ['build_escript']
934  build_all_list += ['build_finley']  build_all_list += ['build_finley']
935  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']
936  #if not IS_WINDOWS_PLATFORM:    build_all_list += ['target_escript_wrapper']  #if not IS_WINDOWS_PLATFORM:    build_all_list += ['target_escript_wrapper']
937  if env['usesilo']:  build_all_list += ['target_escript2silo']  build_all_list += ['target_escriptconvert']
938  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
939    
940  install_all_list = []  install_all_list = []
941  install_all_list += ['target_init']  install_all_list += ['target_init']
942  install_all_list += ['install_esysUtils']  install_all_list += ['install_esysUtils']
943  install_all_list += ['install_paso']  install_all_list += ['install_paso']
944    install_all_list += ['install_dataexporter']
945  install_all_list += ['install_escript']  install_all_list += ['install_escript']
946  install_all_list += ['install_finley']  install_all_list += ['install_finley']
947  install_all_list += ['target_install_pyvisi_py']  install_all_list += ['target_install_pyvisi_py']
# Line 820  install_all_list += ['target_install_mod Line 949  install_all_list += ['target_install_mod
949  install_all_list += ['target_install_pycad_py']  install_all_list += ['target_install_pycad_py']
950  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']
951  #if not IS_WINDOWS_PLATFORM:    install_all_list += ['target_install_escript_wrapper']  #if not IS_WINDOWS_PLATFORM:    install_all_list += ['target_install_escript_wrapper']
952  if env['usesilo']:  install_all_list += ['target_install_escript2silo']  if env['usesilo']:  install_all_list += ['target_install_escriptconvert']
953  install_all_list += ['remember_options']  install_all_list += ['remember_options']
954  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
955    
# Line 835  env.Alias('run_tests', ['install_all', ' Line 964  env.Alias('run_tests', ['install_all', '
964  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])
965  env.Alias('build_full',['install_all','build_tests','build_py_tests'])  env.Alias('build_full',['install_all','build_tests','build_py_tests'])
966    
967    
968  ############ Targets to build the documentation ################  ############ Targets to build the documentation ################
969    
970  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html','install_pdf'])  env.Alias('api_epydoc','install_all')
971    
972    env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html','install_pdf', 'cookbook_pdf'])
973    
974    build_platform=os.name
975    
976  if not IS_WINDOWS_PLATFORM:  if not IS_WINDOWS_PLATFORM:
977     try:     try:
978      utest=open("utest.sh","w")      utest=open("utest.sh","w")
979      build_platform=os.name      #Sometimes Mac python says it is posix      #Sometimes Mac python says it is posix
980      if (build_platform=='posix') and platform.system()=="Darwin":      if (build_platform=='posix') and platform.system()=="Darwin":
981          build_platform='darwin'          build_platform='darwin'
982      utest.write(GroupTest.makeHeader(build_platform))      utest.write(GroupTest.makeHeader(build_platform))
# Line 855  if not IS_WINDOWS_PLATFORM: Line 989  if not IS_WINDOWS_PLATFORM:
989      print "Error attempting to write unittests file."      print "Error attempting to write unittests file."
990      sys.exit(1)      sys.exit(1)
991    
992       #Make sure that the escript wrapper is in place
993       if not os.path.isfile(os.path.join(env['bininstall'],'escript')):
994           print "Copying escript wrapper"
995           shutil.copy("bin/escript",os.path.join(env['bininstall'],'escript'))
996    
997    ############ Targets to build PasoTests suite ################
998    
999    env.Alias('build_PasoTests','build/'+build_platform+'/paso/profiling/PasoTests')
1000    
1001    env.Alias('release_prep', ['docs', 'install_all'])

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