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Wed May 3 10:29:16 2006 UTC (13 years, 4 months ago) by gross
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some installation notes added to users guide
1 gross 625 % $Id$
2     %
3     % Copyright © 2006 by ACcESS MNRF
4     % \url{http://www.access.edu.au
5     % Primary Business: Queensland, Australia.
6     % Licensed under the Open Software License version 3.0
7     % http://www.opensource.org/licenses/osl-3.0.php
8     %
9 gross 565 \chapter{Installation}
10     \label{INSTALL}
11 jgs 82
12 gross 723 Visit \url{http://iservo.edu.au/twiki/bin/view/ESSCC/EsysUser} for more information.
13 jgs 82
14 gross 723 \section{Software needed for installation}
15 jgs 102
16 gross 723 \begin{itemize}
17     \item scons 0.96.91 or newer, see \url{http://www.scons.org/}
18     \item python 2.3.4 or higher, see \url{http://www.python.org/}
19     \item numarray 0.9 or higher, see \url{http://www.stsci.edu/resources/software_hardware/numarray}
20     \item python boost boost 1.31.0 or higher (build system defaults to boost 1.33.0), see \url{http://www.boost.org/}
21     \item g++, see \url{http://gcc.gnu.org/}, or intel c++ compiler, see \\
22     \url{http://www.intel.com/cd/software/products/asmo-na/eng/compilers/}.
23     \end{itemize}
24 gross 707
25 gross 723 \subsection{optional Libraries}
26     These libraries are optional at compile time. By default, thay are switched off.
27     \begin{itemize}
28     \item parallel direct solver from the SGI SCSL library, see \url{http://www.sgi.com/products/software/scsl.html}
29     \item parallel direct solver from intel MKL library (delivered with intel compilers), see \url{http://www.intel.com/cd/software/products/asmo-na/eng/perflib/mkl/}.
30     \end{itemize}
31 gross 707
32 gross 723 \subsection{optional Software}
33    
34 jgs 107 \begin{itemize}
35 gross 723 \item off-line visualization:
36     \begin{itemize}
37     \item mayavi, see \url{http://mayavi.sourceforge.net/}.
38     \item opendx, see \url{http://www.opendx.org/}
39     \end{itemize}
40     \item on-line visualization with pyvisi:
41     \begin{itemize}
42     \item vtk 4.2.1 or newer with with python interface, see \url{http://public.kitware.com/VTK/}
43     \item gnuplot with with python interface, see \url{http://www.gnuplot.info/}
44     \item povray, see \url{http://www.povray.org/}.
45 jgs 107 \end{itemize}
46 gross 723 \end{itemize}
47 gross 565
48 gross 723 \section{Get the source code}
49    
50     You can download the source code, examples and, if required, release tests from \url{http://shake200.esscc.uq.edu.au/joomla/content/view/78//}.
51     Files can be downloaded as *.zip or *.tar.gz files.
52     Usage is under the Open Software License version 3.0, see \url{http://www.opensource.org/licenses/osl-3.0.php}.
53    
54     \subsection{Unpack zip file}
55     Use the commands
56    
57     \begin{verbatim}
58     mkdir <my esys dir>
59     mv escript*.zip <my esys dir>
60     cd <my esys dir>
61     unzip escript*.zip
62     \end{verbatim}
63    
64     to unzip the source files into the directory \verb|<my esys dir>|.
65    
66     \subsection{Unpack tar file}
67    
68     Use the commands
69    
70     \begin{verbatim}
71     mkdir <my esys dir>
72     mv escriot*.tar.gz <my esys dir>
73     cd <my esys dir>
74     tar xzf escript*.tar.gz
75     \end{verbatim}
76    
77     to unpack the source files into the directory \verb|<my esys dir>|.
78    
79 gross 565 \section{Installation}
80 gross 723
81     The installation is started by
82     \begin{verbatim}
83     cd <my esys dir>
84     scons dodebug=no
85     \end{verbatim}
86     By default the configuration for Linux is used. If there is a file \verb|scons/<hostname>_options.py| where is \verb|hostname| is the name of the machine the installation is running (non-literal or non-numerical charcters are replaed by underscore) options is this file are overwrite the default setting. Use =scons/ess_options.py= as a staring point to create a file for your machine. If you want to use personalied setting in the file myoptions.py you can run
87     \begin{verbatim}
88     cd <my esys dir>
89     scons dodebug=no options_file=myoptions.py
90     \end{verbatim}
91     You can also overwrite individual setting trough the command line. e.g.
92     \begin{verbatim}
93     cd <my esys dir>
94     scons dodebug=no libinstall=/usr/lib
95     \end{verbatim}
96     will install the libraries into the directory \verb|/usr/lib|.
97    
98     Get help on options with the following command
99     \begin{verbatim}
100     cd <my esys dir>
101     scons -h
102     \end{verbatim}
103     To uninstall the installation use
104     \begin{verbatim}
105     cd <my esys dir>
106     scons -c
107     \end{verbatim}
108    
109     If you have more than one processor available for compilation you can use the -j option to tell scons to do parallel compiles:
110     \begin{verbatim}
111     cd <my esys dir>
112     scons dodebug=no -j 8
113     \end{verbatim}
114     \section{Running Release Tests}
115     To test your installation you have to download and unpack the release tests. You can run the tests by
116     \begin{verbatim}
117     cd <my esys dir>
118     scons dodebug=no all_tests
119     \end{verbatim}
120     The tests can take a while (up to several hours). In some cases it can be sufficient to run the test for the C/C++ components only. Use
121     \begin{verbatim}
122     cd <my esys dir>
123     scons dodebug=no run_tests
124     \end{verbatim}
125     to run these tests.
126     It can be usefull to run the tests in the debug mode:
127     \begin{verbatim}
128     cd <my esys dir>
129     scons dodebug=yes run_tests
130     \end{verbatim}
131     Keep in mind that this will rebuild the libraries in the debug mode. You have to rebuild the libraries with option =dodebug=no= to get back to a productive installation.
132    
133    
134     \section{Environment setup}
135     To make esys accessible from python you have to set
136     \begin{verbatim}
137     export PYTHONPATH=<my esys dir>:${PYTHONPATH}
138     export LD_LIBRARY_PATH=<my esys dir>/lib:${LD_LIBRARY_PATH}
139     \end{verbatim}
140     Currently an installation into the python site-packages directory is not supported.
141    
142     If you wnat to check your setup and you have download the examples you can run
143     \begin{verbatim}
144     cd <my esys dir>/doc/examples
145     python poisson.py
146     \end{verbatim}
147    
148     \subsection{OpenMP support}
149    
150     If your system and compiler support OpenMP parallelization and OpenMP parallelization has been switched on during compilation, you need to set the following environment variable to run scripts in parallel (in this case with four threads):
151     \begin{verbatim}
152     export OMP_NUM_THREADS=4
153     cd <my esys dir>/doc/examples
154     python poisson.py
155     \end{verbatim}
156    
157     \section{Getting help}
158     If there is a problem or questin please contact \url{mailto:esys@esscc.uq.edu.au}.

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