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revision 2054 by phornby, Mon Nov 17 13:20:41 2008 UTC revision 2409 by jfenwick, Tue May 5 06:22:11 2009 UTC
# Line 15  Line 15 
15  EnsureSConsVersion(0,96,91)  EnsureSConsVersion(0,96,91)
16  EnsurePythonVersion(2,3)  EnsurePythonVersion(2,3)
17    
18  import sys, os, re, socket  import sys, os, re, socket, platform, stat
19    
20  # Add our extensions  # Add our extensions
21  if os.path.isdir('scons'): sys.path.append('scons')  if os.path.isdir('scons'): sys.path.append('scons')
# Line 33  IS_WINDOWS_PLATFORM = (os.name== "nt") Line 33  IS_WINDOWS_PLATFORM = (os.name== "nt")
33    
34  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)
35    
36  # Read configuration options from file scons/<hostname>_options.py  #Determine where to read options from use:
37  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  #1. command line
38  tmp = os.path.join("scons",hostname+"_options.py")  #2. scons/<hostname>_options.py
39  options_file = ARGUMENTS.get('options_file', tmp)  #3. name as part of a cluster
40    options_file=ARGUMENTS.get('options_file', None)
41    if not options_file:
42      hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])
43      options_file = os.path.join("scons",hostname+"_options.py")
44      #If there is no options file with that name see if there is a substitute
45      if not os.path.isfile(options_file):
46        tmp = scons_extensions.effectiveName(hostname)
47        options_file = os.path.join("scons",tmp+"_options.py")
48    
49  if not os.path.isfile(options_file):  if not os.path.isfile(options_file):
50      print "Options file not found (expected '%s')" % options_file
51    options_file = False    options_file = False
   print "Options file not found (expected '%s')" % tmp  
52  else:  else:
53    print "Options file is", options_file    print "Options file is", options_file
54    
# Line 72  opts.AddOptions( Line 81  opts.AddOptions(
81    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
82    ('sys_libs', 'System libraries to link with', []),    ('sys_libs', 'System libraries to link with', []),
83    ('ar_flags', 'Static library archiver flags to use', ''),    ('ar_flags', 'Static library archiver flags to use', ''),
84    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'yes'),    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'no'),
85    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),
86    BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),    BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),
87      ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),
88  # Python  # Python
89    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),
90    ('python_lib_path', 'Path to Python libs', usr_lib),    ('python_lib_path', 'Path to Python libs', usr_lib),
# Line 97  opts.AddOptions( Line 107  opts.AddOptions(
107    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),
108    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),
109    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),
110      ('mpi_flavour','Type of MPI execution environment','none'),
111  # ParMETIS  # ParMETIS
112    BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),    BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),
113    ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),    ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),
# Line 119  opts.AddOptions( Line 130  opts.AddOptions(
130    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),
131    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),
132    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),
133    # Silo
134      BoolOption('usesilo', 'switch on/off the usage of Silo', 'yes'),
135      ('silo_path', 'Path to Silo includes', '/usr/include'),
136      ('silo_lib_path', 'Path to Silo libs', usr_lib),
137      ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
138  # AMD (used by UMFPACK)  # AMD (used by UMFPACK)
139    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),
140    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('amd_lib_path', 'Path to AMD libs', usr_lib),
# Line 164  if env['useMPI']: env['usempi'] = 1 Line 180  if env['useMPI']: env['usempi'] = 1
180  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)
181  # For both C and C++ you get: cc_flags and either the optim flags or debug flags  # For both C and C++ you get: cc_flags and either the optim flags or debug flags
182    
183    sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.
184    
185  if env["CC"] == "icc":  if env["CC"] == "icc":
186    # Intel compilers    # Intel compilers
187    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
# Line 174  if env["CC"] == "icc": Line 192  if env["CC"] == "icc":
192    omp_libs      = ['guide', 'pthread']    omp_libs      = ['guide', 'pthread']
193    pedantic      = ""    pedantic      = ""
194    fatalwarning      = ""        # Switch to turn warnings into errors    fatalwarning      = ""        # Switch to turn warnings into errors
195      sysheaderopt      = ""
196  elif env["CC"] == "gcc":  elif env["CC"] == "gcc":
197    # GNU C on any system    # GNU C on any system
198    cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER -isystem " + env['boost_path'] + " -isystem " + env['python_path'] + " -Wno-sign-compare -Wno-system-headers -Wno-strict-aliasing"    cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"
199  #the strict aliasing warning is triggered by some type punning in the boost headers for version 1.34  #the long long warning occurs on the Mac
 #isystem does not seem to prevent this  
200    cc_optim      = "-O3"    cc_optim      = "-O3"
201    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
202    omp_optim     = ""    omp_optim     = "-fopenmp"
203    omp_debug     = ""    omp_debug     = "-fopenmp"
204    omp_libs      = []    omp_libs      = ['gomp']
205    pedantic      = "-pedantic-errors -Wno-long-long"    pedantic      = "-pedantic-errors -Wno-long-long"
206    fatalwarning      = "-Werror"    fatalwarning      = "-Werror"
207      sysheaderopt      = "-isystem "
208  elif env["CC"] == "cl":  elif env["CC"] == "cl":
209    # Microsoft Visual C on Windows    # Microsoft Visual C on Windows
210    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"
# Line 196  elif env["CC"] == "cl": Line 215  elif env["CC"] == "cl":
215    omp_libs      = []    omp_libs      = []
216    pedantic      = ""    pedantic      = ""
217    fatalwarning      = ""    fatalwarning      = ""
218      sysheaderopt      = ""
219  elif env["CC"] == "icl":  elif env["CC"] == "icl":
220    # intel C on Windows, see windows_intelc_options.py for a start    # intel C on Windows, see windows_intelc_options.py for a start
221    pedantic      = ""    pedantic      = ""
222    fatalwarning      = ""    fatalwarning      = ""
223      sysheaderopt      = ""
224    
225    
226  # If not specified in hostname_options.py then set them here  # If not specified in hostname_options.py then set them here
227  if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags
# Line 209  if env["omp_optim"]    == "-DEFAULT_4": env Line 231  if env["omp_optim"]    == "-DEFAULT_4": env
231  if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug
232  if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs
233    
234    #set up the autolazy values
235    if env['forcelazy']    != "leave_alone":
236      if env['forcelazy'] == 'on':
237        env.Append(CPPDEFINES='FAUTOLAZYON')
238      else:
239         if env['forcelazy'] == 'off':
240        env.Append(CPPDEFINES='FAUTOLAZYOFF')
241    
242  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty
243  if not env["useopenmp"]:  if not env["useopenmp"]:
244    env['omp_optim'] = ""    env['omp_optim'] = ""
# Line 222  if env['omp_optim'] == "" and env['omp_d Line 252  if env['omp_optim'] == "" and env['omp_d
252  try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']  try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']
253  except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1  except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1
254    
255    try: env['ENV']['ESCRIPT_NUM_THREADS'] = os.environ['ESCRIPT_NUM_THREADS']
256    except KeyError: pass
257    
258    try: env['ENV']['ESCRIPT_NUM_PROCS'] = os.environ['ESCRIPT_NUM_PROCS']
259    except KeyError: pass
260    
261    try: env['ENV']['ESCRIPT_NUM_NODES'] = os.environ['ESCRIPT_NUM_NODES']
262    except KeyError: pass
263    
264    try: env['ENV']['ESCRIPT_HOSTFILE'] = os.environ['ESCRIPT_HOSTFILE']
265    except KeyError: pass
266    
267  try: env['ENV']['PATH'] = os.environ['PATH']  try: env['ENV']['PATH'] = os.environ['PATH']
268  except KeyError: pass  except KeyError: pass
269    
# Line 276  if env['usepedantic']: env.Append(CCFLAG Line 318  if env['usepedantic']: env.Append(CCFLAG
318    
319  # MS Windows  # MS Windows
320  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
321    env.PrependENVPath('PATH',    [env['boost_lib_path']])    env.AppendENVPath('PATH', [env['boost_lib_path']])
322    env.PrependENVPath('PATH',    [env['libinstall']])    env.AppendENVPath('PATH', [env['libinstall']])
323    if not env['share_esysUtils'] :    if not env['share_esysUtils'] :
324      env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])      env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
325    if not env['share_paso'] :    if not env['share_paso'] :
326      env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])      env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
327    
328    if env['usenetcdf']:    if env['usenetcdf']:
329      env.PrependENVPath('PATH',  [env['netCDF_lib_path']])      env.AppendENVPath('PATH',   [env['netCDF_lib_path']])
330    
331  env.Append(ARFLAGS = env['ar_flags'])  env.Append(ARFLAGS = env['ar_flags'])
332    
# Line 313  conf = Configure(clone_env(env)) Line 355  conf = Configure(clone_env(env))
355    
356  # Test that the compiler is working  # Test that the compiler is working
357  if not conf.CheckFunc('printf'):  if not conf.CheckFunc('printf'):
358    print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])     print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])
359    sys.exit(1)     sys.exit(1)
360    
361  if conf.CheckFunc('gethostname'):  if conf.CheckFunc('gethostname'):
362    conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])    conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])
363    
364  ############ python libraries (required) #######################  ############ python libraries (required) #######################
365    
366  conf.env.AppendUnique(CPPPATH       = [env['python_path']])  
367    if not sysheaderopt =="":
368      conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])
369    else:
370      conf.env.AppendUnique(CPPPATH     = [env['python_path']])
371    
372  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])
373  conf.env.AppendUnique(LIBS      = [env['python_libs']])  conf.env.AppendUnique(LIBS      = [env['python_libs']])
374    
375  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs
376    conf.env.PrependENVPath('PYTHONPATH', prefix)
377    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
378    
379  if not conf.CheckCHeader('Python.h'):  if not conf.CheckCHeader('Python.h'):
380    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])
381    sys.exit(1)    sys.exit(1)
382  if not conf.CheckFunc('Py_Main'):  if not conf.CheckFunc('Py_Exit'):
383    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])
384    sys.exit(1)    sys.exit(1)
385    
386  ############ boost (required) ##################################  ############ boost (required) ##################################
387    
388  conf.env.AppendUnique(CPPPATH       = [env['boost_path']])  if not sysheaderopt =="":
389    # This is required because we can't -isystem /usr/system because it breaks std includes
390      if os.path.normpath(env['boost_path']) =="/usr/include":
391        conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))
392      else:
393        conf.env.Append(CCFLAGS=sysheaderopt+env['boost_path'])
394    else:
395      conf.env.AppendUnique(CPPPATH     = [env['boost_path']])
396    
397  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])
398  conf.env.AppendUnique(LIBS      = [env['boost_libs']])  conf.env.AppendUnique(LIBS      = [env['boost_libs']])
399    
400  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs
401    #ensure that our path entries remain at the front
402    conf.env.PrependENVPath('PYTHONPATH', prefix)
403    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
404    
405  if not conf.CheckCXXHeader('boost/python.hpp'):  if not conf.CheckCXXHeader('boost/python.hpp'):
406    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])
407    sys.exit(1)    sys.exit(1)
408    
409  if not conf.CheckFunc('PyObject_SetAttr'):  if not conf.CheckFunc('PyObject_SetAttr'):
410    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])
411    sys.exit(1)    sys.exit(1)
# Line 374  if env['usenetcdf']: Line 435  if env['usenetcdf']:
435    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])
436    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])
437    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs
438      #ensure that our path entries remain at the front
439      conf.env.PrependENVPath('PYTHONPATH', prefix)
440      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
441    
442  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0
443  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0
# Line 395  if env['usepapi']: Line 459  if env['usepapi']:
459    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])
460    conf.env.AppendUnique(LIBS    = [env['papi_libs']])    conf.env.AppendUnique(LIBS    = [env['papi_libs']])
461    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs
462      #ensure that our path entries remain at the front
463      conf.env.PrependENVPath('PYTHONPATH', prefix)
464      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
465    
466  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0
467  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0
# Line 416  if env['usemkl']: Line 483  if env['usemkl']:
483    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])
484    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])
485    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs
486      #ensure that our path entries remain at the front
487      conf.env.PrependENVPath('PYTHONPATH', prefix)
488      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
489    
490  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0
491  if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckFunc('pardiso'): env['usemkl'] = 0
492    
493  # Add MKL to environment env if it was found  # Add MKL to environment env if it was found
494  if env['usemkl']:  if env['usemkl']:
# Line 446  if env['useumfpack']: Line 516  if env['useumfpack']:
516    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs
517    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs
518    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs
519      #ensure that our path entries remain at the front
520      conf.env.PrependENVPath('PYTHONPATH', prefix)
521      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
522    
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
523  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0
524    if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0
525    # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?
526    
527  # Add UMFPACK to environment env if it was found  # Add UMFPACK to environment env if it was found
528  if env['useumfpack']:  if env['useumfpack']:
# Line 457  if env['useumfpack']: Line 531  if env['useumfpack']:
531  else:  else:
532    conf.Finish()    conf.Finish()
533    
534    ############ Silo (optional) ###################################
535    
536    if env['usesilo']:
537      conf = Configure(clone_env(env))
538      conf.env.AppendUnique(CPPPATH = [env['silo_path']])
539      conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])
540      conf.env.AppendUnique(LIBS = [env['silo_libs']])
541      if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0
542      if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0
543      conf.Finish()
544    
545    # Add the path to Silo to environment env if it was found.
546    # Note that we do not add the libs since they are only needed for the
547    # escriptreader library and tools.
548    if env['usesilo']:
549      env.AppendUnique(CPPPATH = [env['silo_path']])
550      env.AppendUnique(LIBPATH = [env['silo_lib_path']])
551      env.Append(CPPDEFINES = ['HAVE_SILO'])
552    
553  ############ Add the compiler flags ############################  ############ Add the compiler flags ############################
554    
555  # Enable debug by choosing either cc_debug or cc_optim  # Enable debug by choosing either cc_debug or cc_optim
# Line 471  else: Line 564  else:
564  env.Append(CCFLAGS      = env['cc_flags'])  env.Append(CCFLAGS      = env['cc_flags'])
565  env.Append(LIBS         = [env['omp_libs']])  env.Append(LIBS         = [env['omp_libs']])
566    
567    ############ Add some custom builders ##########################
568    
569    py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
570    env.Append(BUILDERS = {'PyCompile' : py_builder});
571    
572    runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
573    env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
574    
575    runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
576    env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
577    
578    epstopdfbuilder = Builder(action = scons_extensions.eps2pdf, suffix=".pdf", src_suffix=".eps", single_source=True)
579    env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
580    
581  ############ MPI (optional) ####################################  ############ MPI (optional) ####################################
582    if not env['usempi']: env['mpi_flavour']='none'
583    
584  # Create a modified environment for MPI programs (identical to env if usempi=no)  # Create a modified environment for MPI programs (identical to env if usempi=no)
585  env_mpi = clone_env(env)  env_mpi = clone_env(env)
# Line 480  env_mpi = clone_env(env) Line 588  env_mpi = clone_env(env)
588  conf = Configure(clone_env(env_mpi))  conf = Configure(clone_env(env_mpi))
589    
590  if env_mpi['usempi']:  if env_mpi['usempi']:
591      VALID_MPIs=[ "MPT", "MPICH", "MPICH2", "OPENMPI", "INTELMPI" ]
592      if not env_mpi['mpi_flavour'] in VALID_MPIs:
593          raise ValueError,"MPI is enabled but mpi_flavour = %s is not a valid key from %s."%( env_mpi['mpi_flavour'],VALID_MPIs)
594    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])
595    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])
596    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])
597    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs
598      #ensure that our path entries remain at the front
599      conf.env.PrependENVPath('PYTHONPATH', prefix)
600      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
601    
602  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0
603  if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  # if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0
604    
605  # Add MPI to environment env_mpi if it was found  # Add MPI to environment env_mpi if it was found
606  if env_mpi['usempi']:  if env_mpi['usempi']:
# Line 497  else: Line 611  else:
611    
612  env['usempi'] = env_mpi['usempi']  env['usempi'] = env_mpi['usempi']
613    
614    
615  ############ ParMETIS (optional) ###############################  ############ ParMETIS (optional) ###############################
616    
617  # Start a new configure environment that reflects what we've already found  # Start a new configure environment that reflects what we've already found
# Line 509  if env_mpi['useparmetis']: Line 624  if env_mpi['useparmetis']:
624    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])
625    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])
626    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs
627      #ensure that our path entries remain at the front
628      conf.env.PrependENVPath('PYTHONPATH', prefix)
629      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
630    
631  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0
632  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0
# Line 545  if env['usemkl']: print "  Using MKL" Line 663  if env['usemkl']: print "  Using MKL"
663  else: print "   Not using MKL"  else: print "   Not using MKL"
664  if env['useumfpack']: print "   Using UMFPACK"  if env['useumfpack']: print "   Using UMFPACK"
665  else: print "   Not using UMFPACK"  else: print "   Not using UMFPACK"
666    if env['usesilo']: print "  Using Silo"
667    else: print "   Not using Silo"
668  if env['useopenmp']: print "    Using OpenMP"  if env['useopenmp']: print "    Using OpenMP"
669  else: print "   Not using OpenMP"  else: print "   Not using OpenMP"
670  if env['usempi']: print "   Using MPI"  if env['usempi']: print "   Using MPI (flavour = %s)"%env['mpi_flavour']
671  else: print "   Not using MPI"  else: print "   Not using MPI"
672  if env['useparmetis']: print "  Using ParMETIS"  if env['useparmetis']: print "  Using ParMETIS"
673  else: print "   Not using ParMETIS (requires MPI)"  else: print "   Not using ParMETIS (requires MPI)"
# Line 562  print "" Line 682  print ""
682    
683  ############ Delete option-dependent files #####################  ############ Delete option-dependent files #####################
684    
685  Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.debug")))
686  Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.mpi")))
687  Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.openmp")))
688  if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))  Execute(Delete(os.path.join(env['libinstall'],"pyversion")))
689    Execute(Delete(os.path.join(env['libinstall'],"buildvars")))
690    if not env['usempi']: Execute(Delete(os.path.join(env['libinstall'],"pythonMPI")))
691    
 ############ Add some custom builders ##########################  
692    
693  py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  ############ Build the subdirectories ##########################
 env.Append(BUILDERS = {'PyCompile' : py_builder});  
   
 runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  
 env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  
694    
695  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  from grouptest import *
 env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  
696    
697  ############ Build the subdirectories ##########################  TestGroups=[]
698    
699  Export(  Export(
700    ["env",    ["env",
701     "env_mpi",     "env_mpi",
702     "clone_env",     "clone_env",
703     "IS_WINDOWS_PLATFORM"     "IS_WINDOWS_PLATFORM",
704       "TestGroups"
705     ]     ]
706    )    )
707    
708  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
709    env.SConscript(dirs = ['tools/libescriptreader/src'], build_dir='build/$PLATFORM/tools/libescriptreader', duplicate=0)
710  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)
711  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)
712  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)
# Line 599  env.SConscript(dirs = ['pyvisi/py_src'], Line 717  env.SConscript(dirs = ['pyvisi/py_src'],
717  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)
718  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)
719  env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)  env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)
720    env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)
721    
722    
723  ############ Remember what optimizations we used ###############  ############ Remember what optimizations we used ###############
724    
725  remember_list = []  remember_list = []
726    
727  if env['usedebug']:  if env['usedebug']:
728    remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.debug"), None, Touch('$TARGET'))
729    
730  if env['usempi']:  if env['usempi']:
731    remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.mpi"), None, Touch('$TARGET'))
732    
733  if env['omp_optim'] != '':  if env['useopenmp']:
734    remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.openmp"), None, Touch('$TARGET'))
735    
736  env.Alias('remember_options', remember_list)  env.Alias('remember_options', remember_list)
737    
738    
739    ############### Record python interpreter version ##############
740    
741    if not IS_WINDOWS_PLATFORM:
742      versionstring="Python "+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])
743      os.system("echo "+versionstring+" > "+os.path.join(env['libinstall'],"pyversion"))
744    
745    ############## Populate the buildvars file #####################
746    
747    buildvars=open(os.path.join(env['libinstall'],'buildvars'),'w')
748    buildvars.write('python='+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+'\n')
749    
750    # Find the boost version by extracting it from version.hpp
751    boosthpp=open(os.path.join(env['boost_path'],'boost','version.hpp'))
752    boostversion='unknown'
753    try:
754        for line in boosthpp:
755            ver=re.match(r'#define BOOST_VERSION (\d+)',line)
756            if ver:
757                boostversion=ver.group(1)
758    except StopIteration:
759        pass
760    buildvars.write("boost="+boostversion+"\n")
761    buildvars.write("svn_revision="+str(global_revision)+"\n")
762    out="usedebug="
763    if env['usedebug']:
764        out+="y"
765    else:
766        out+="n"
767    out+="\nusempi="
768    if env['usempi']:
769        out+="y"
770    else:
771        out+="n"
772    out+="\nuseopenmp="
773    if env['useopenmp']:
774        out+="y"
775    else:
776        out+="n"
777    buildvars.write(out+"\n")
778    buildvars.write("mpi_flavour="+env['mpi_flavour']+'\n')
779    
780    buildvars.close()
781    
782    
783  ############ Targets to build and install libraries ############  ############ Targets to build and install libraries ############
784    
785  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))
# Line 640  build_all_list += ['build_paso'] Line 805  build_all_list += ['build_paso']
805  build_all_list += ['build_escript']  build_all_list += ['build_escript']
806  build_all_list += ['build_finley']  build_all_list += ['build_finley']
807  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']
808  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_finley_wrapper']  #if not IS_WINDOWS_PLATFORM:    build_all_list += ['target_escript_wrapper']
809    if env['usesilo']:  build_all_list += ['target_escript2silo']
810  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
811    
812  install_all_list = []  install_all_list = []
# Line 653  install_all_list += ['target_install_pyv Line 819  install_all_list += ['target_install_pyv
819  install_all_list += ['target_install_modellib_py']  install_all_list += ['target_install_modellib_py']
820  install_all_list += ['target_install_pycad_py']  install_all_list += ['target_install_pycad_py']
821  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']
822  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_finley_wrapper']  #if not IS_WINDOWS_PLATFORM:    install_all_list += ['target_install_escript_wrapper']
823    if env['usesilo']:  install_all_list += ['target_install_escript2silo']
824  install_all_list += ['remember_options']  install_all_list += ['remember_options']
825  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
826    
# Line 666  env.Alias('build_cppunittest', ['target_ Line 833  env.Alias('build_cppunittest', ['target_
833  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])
834  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])
835  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])
836    env.Alias('build_full',['install_all','build_tests','build_py_tests'])
837    
838  ############ Targets to build the documentation ################  ############ Targets to build the documentation ################
839    
840  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html','install_pdf'])
841    
842    if not IS_WINDOWS_PLATFORM:
843       try:
844        utest=open("utest.sh","w")
845        build_platform=os.name      #Sometimes Mac python says it is posix
846        if (build_platform=='posix') and platform.system()=="Darwin":
847            build_platform='darwin'
848        utest.write(GroupTest.makeHeader(build_platform))
849        for tests in TestGroups:
850            utest.write(tests.makeString())
851        utest.close()
852        os.chmod("utest.sh",stat.S_IRWXU|stat.S_IRGRP|stat.S_IXGRP|stat.S_IROTH|stat.S_IXOTH)
853        print "utest.sh written"
854       except IOError:
855        print "Error attempting to write unittests file."
856        sys.exit(1)
857    

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