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revision 1559 by ksteube, Wed May 21 04:27:15 2008 UTC revision 3178 by caltinay, Tue Sep 14 00:31:59 2010 UTC
# Line 1  Line 1 
1  #         Copyright 2006 by ACcESS MNRF  
2    ########################################################
3    #
4    # Copyright (c) 2003-2010 by University of Queensland
5    # Earth Systems Science Computational Center (ESSCC)
6    # http://www.uq.edu.au/esscc
7  #  #
8  #              http://www.access.edu.au  # Primary Business: Queensland, Australia
9  #       Primary Business: Queensland, Australia  # Licensed under the Open Software License version 3.0
10  #  Licensed under the Open Software License version 3.0  # http://www.opensource.org/licenses/osl-3.0.php
11  #     http://www.opensource.org/licenses/osl-3.0.php  #
12    ########################################################
13  # top-level Scons configuration file for all esys13 modules  
14  # Begin initialisation Section  
 # all of this section just intialises default environments and helper  
 # scripts. You shouldn't need to modify this section.  
15  EnsureSConsVersion(0,96,91)  EnsureSConsVersion(0,96,91)
16  EnsurePythonVersion(2,3)  EnsurePythonVersion(2,3)
17    
18  #===============================================================  import sys, os, re, socket, platform, stat
19  #   import tools:  # For copy()
20  import glob  import shutil
21  import sys, os, re  
22  # Add our extensions  # Add our extensions
23  if sys.path.count('scons')==0: sys.path.append('scons')  if os.path.isdir('scons'): sys.path.append('scons')
24  import scons_extensions  import scons_extensions
25    
26  # We may also need to know where python's site-packages subdirectory lives  # Use /usr/lib64 if available, else /usr/lib
27  python_version = 'python%s.%s'%(sys.version_info[0],sys.version_info[1])  usr_lib = '/usr/lib'
28    if os.path.isfile('/usr/lib64/libc.so'): usr_lib = '/usr/lib64'
 #===============================================================  
   
 tools_prefix="/usr"  
   
 #==============================================================================================      
 #      
 #    get the installation prefix  
 #  
 prefix = ARGUMENTS.get('prefix', sys.prefix )  
   
 # We may also need to know where python's site-packages subdirectory lives  
 python_version = 'python%s.%s'%(sys.version_info[0],sys.version_info[1])  
 # Install as a standard python package in /usr/lib64 if available, else in /usr/lib  
 if os.path.isdir(  prefix+"/lib64/"+python_version+"/site-packages"):  
    sys_dir_packages =  prefix+"/lib64/"+python_version+"/site-packages/esys"  
    sys_dir_libraries = prefix+"/lib64"  
 else:  
    sys_dir_packages =  prefix+"/lib/"+python_version+"/site-packages/esys"  
    sys_dir_libraries = prefix+"/lib"  
   
 sys_dir_examples = prefix+"/share/doc/esys"  
   
 source_root = Dir('#.').abspath  
   
 dir_packages = os.path.join(source_root,"esys")  
 dir_examples = os.path.join(source_root,"examples")  
 dir_libraries = os.path.join(source_root,"lib")  
   
 print "Source root is : ",source_root  
 print " Default packages local installation:    ", dir_packages  
 print " Default library local installation  ", dir_libraries  
 print " Default example local  installation:    ", dir_examples  
 print "Install prefix is: ", prefix  
 print " Default packages system installation:   ", sys_dir_packages  
 print " Default library system installation     ", sys_dir_libraries  
 print " Default example system installation:    ", sys_dir_examples  
   
 #==============================================================================================      
   
 # Default options and options help text  
 # These are defaults and can be overridden using command line arguments or an options file.  
 # if the options_file or ARGUMENTS do not exist then the ones listed as default here are used  
 # DO NOT CHANGE THEM HERE  
 # Where to install?  
 #==============================================================================================      
 #      
 #    get the options file if present:  
 #  
 options_file = ARGUMENTS.get('options_file','')  
   
 if not os.path.isfile(options_file) :  
     options_file = False  
   
 if not options_file :  
    import socket  
    hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  
    tmp = os.path.join("scons",hostname+"_options.py")  
29    
30     if os.path.isfile(tmp) :  # The string python2.4 or python2.5
31        options_file = tmp  python_version = 'python%s.%s' % (sys.version_info[0], sys.version_info[1])
32    
33    # MS Windows support, many thanks to PH
34  IS_WINDOWS_PLATFORM = (os.name== "nt")  IS_WINDOWS_PLATFORM = (os.name== "nt")
35    
36  # If you're not going to tell me then......  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)
 # FIXME: add one for the altix too.  
 if not options_file :  
    if IS_WINDOWS_PLATFORM :  
       options_file = "scons/windows_mscv71_options.py"  
    else:  
       options_file = "scons/linux_gcc_eg_options.py"  
37    
38  # and load it  #Holds names of variables from the calling environment which need to be passed
39  opts = Options(options_file, ARGUMENTS)  #to tools
40  #================================================================  env_export=[]
41  #  
42  #   check if UMFPACK is installed on the system:  #Determine where to read options from use:
43  #  #1. command line
44  uf_root=None  #2. scons/<hostname>_options.py
45  for i in [ 'UMFPACK', 'umfpack', 'ufsparse', 'UFSPARSE']:  #3. name as part of a cluster
46     if os.path.isdir(os.path.join(tools_prefix,'include',i)):  options_file=ARGUMENTS.get('options_file', None)
47         uf_root=i  effective_hostname=socket.gethostname().split('.')[0]
48         print i," is used form ",tools_prefix  if not options_file:
49         break    mangledhostname = re.sub("[^0-9a-zA-Z]", "_", effective_hostname)
50  if not uf_root==None:    options_file = os.path.join("scons",mangledhostname+"_options.py")
51     umf_path_default=os.path.join(tools_prefix,'include',uf_root)    #If there is no options file with that name see if there is a substitute
52     umf_lib_path_default=os.path.join(tools_prefix,'lib')    if not os.path.isfile(options_file):
53     umf_libs_default=['umfpack']      effective_hostname = scons_extensions.effectiveName(effective_hostname)
54     amd_path_default=os.path.join(tools_prefix,'include',uf_root)      mangledhostname = re.sub("[^0-9a-zA-Z]", "_", effective_hostname)
55     amd_lib_path_default=os.path.join(tools_prefix,'lib')      options_file = os.path.join("scons",mangledhostname+"_options.py")
56     amd_libs_default=['amd']  
57     ufc_path_default=os.path.join(tools_prefix,'include',uf_root)  if not os.path.isfile(options_file):
58  else:    print "Options file not found (expected '%s')" % options_file
59     umf_path_default=None    options_file = False
60     umf_lib_path_default=None  else:
61     umf_libs_default=None    print "Options file is", options_file
    amd_path_default=None  
    amd_lib_path_default=None  
    amd_libs_default=None  
    ufc_path_default=None  
 #  
 #==========================================================================  
 #  
 #    python installation:  
 #  
 python_path_default=os.path.join(tools_prefix,'include','python%s.%s'%(sys.version_info[0],sys.version_info[1]))  
 python_lib_path_default=os.path.join(tools_prefix,'lib')  
 python_lib_default="python%s.%s"%(sys.version_info[0],sys.version_info[1])  
62    
63  #==========================================================================  #Does our scons support the newer Variables class or do we need to use Options?
 #  
 #    boost installation:  
 #  
 boost_path_default=os.path.join(tools_prefix,'include')  
 boost_lib_path_default=os.path.join(tools_prefix,'lib')  
 boost_lib_default=['boost_python']  
64    
65  #==========================================================================  try:
66  #     dummyvar=Variables
67  #    check if netCDF is installed on the system:     opts = Variables(options_file, ARGUMENTS)
68  #     adder = opts.AddVariables
69  netCDF_path_default=os.path.join(tools_prefix,'include','netcdf-3')  except:
70  netCDF_lib_path_default=os.path.join(tools_prefix,'lib')     opts = Options(options_file, ARGUMENTS)
71       adder = opts.AddOptions
72       BoolVariable = BoolOption
73    
74  if os.path.isdir(netCDF_path_default) and os.path.isdir(netCDF_lib_path_default):  ############ Load build options ################################
      useNetCDF_default='yes'  
      netCDF_libs_default=[ 'netcdf_c++', 'netcdf' ]  
 else:  
      useNetCDF_default='no'  
      netCDF_path_default=None  
      netCDF_lib_path_default=None  
      netCDF_libs_default=None  
75    
76  #==========================================================================  adder(
77  #  #opts.AddOptions(
 #  MPI:  
 #  
 if IS_WINDOWS_PLATFORM:  
    useMPI_default='no'  
    mpi_path_default=None  
    mpi_lib_path_default=None  
    mpi_libs_default=[]  
    mpi_run_default=None  
 else:  
    useMPI_default='no'  
    mpi_root='/usr/local'  
    mpi_path_default=os.path.join(mpi_root,'include')  
    mpi_lib_path_default=os.path.join(mpi_root,'lib')  
    mpi_libs_default=[ 'mpich' , 'pthread', 'rt' ]  
    mpi_run_default='mpiexec -np 1'  
 #  
 #==========================================================================  
 #  
 #    compile:  
 #  
 cc_flags_default='-O3 -std=c99 -ffast-math -fpic -Wno-unknown-pragmas -ansi'  
 cc_flags_debug_default='-g -O0 -ffast-math -std=c99 -fpic -Wno-unknown-pragmas -ansi'  
 cxx_flags_default='--no-warn -ansi'  
 cxx_flags_debug_default='--no-warn -ansi -DDOASSERT'  
   
 #==============================================================================================      
 # Default options and options help text  
 # These are defaults and can be overridden using command line arguments or an options file.  
 # if the options_file or ARGUMENTS do not exist then the ones listed as default here are used  
 # DO NOT CHANGE THEM HERE  
 opts.AddOptions(  
78  # Where to install esys stuff  # Where to install esys stuff
79    ('incinstall', 'where the esys headers will be installed',             Dir('#.').abspath+'/include'),    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),
80    ('libinstall', 'where the esys libraries will be installed',           dir_libraries),    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),
81    ('pyinstall', 'where the esys python modules will be installed',       dir_packages),    ('bininstall', 'where the esys binaries will be installed',            os.path.join(prefix,'bin')),
82    ('exinstall', 'where the esys examples will be installed',             dir_examples),    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),
83    ('sys_libinstall', 'where the system esys libraries will be installed',       sys_dir_libraries),    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),
   ('sys_pyinstall', 'where the system esys python modules will be installed',   sys_dir_packages),  
   ('sys_exinstall', 'where the system esys examples will be installed',         sys_dir_examples),  
   ('src_zipfile', 'the source zip file will be installed.',              Dir('#.').abspath+"/release/escript_src.zip"),  
   ('test_zipfile', 'the test zip file will be installed.',               Dir('#.').abspath+"/release/escript_tests.zip"),  
   ('src_tarfile', 'the source tar file will be installed.',              Dir('#.').abspath+"/release/escript_src.tar.gz"),  
   ('test_tarfile', 'the test tar file will be installed.',               Dir('#.').abspath+"/release/escript_tests.tar.gz"),  
   ('examples_tarfile', 'the examples tar file will be installed.',       Dir('#.').abspath+"/release/doc/escript_examples.tar.gz"),  
   ('examples_zipfile', 'the examples zip file will be installed.',       Dir('#.').abspath+"/release/doc/escript_examples.zip"),  
   ('guide_pdf', 'name of the user guide in pdf format',                  Dir('#.').abspath+"/release/doc/user/guide.pdf"),  
   ('api_epydoc', 'name of the epydoc api docs directory',                Dir('#.').abspath+"/release/doc/epydoc"),  
   ('guide_html', 'name of the directory for user guide in html format',  Dir('#.').abspath+"/release/doc/user/html"),  
   ('api_doxygen', 'name of the doxygen api docs directory',prefix+"/release/doc/doxygen"),  
84  # Compilation options  # Compilation options
85    BoolOption('dodebug', 'Do you want a debug build?', 'no'),    BoolVariable('dodebug', 'For backwards compatibility', 'no'),
86    BoolOption('bounds_check', 'Do you want extra array bounds checking?', 'no'),    BoolVariable('usedebug', 'Do you want a debug build?', 'no'),
87    ('options_file', "Optional file containing preferred options. Ignored if it doesn't exist (default: scons/<hostname>_options.py)", options_file),    BoolVariable('usevtk', 'Do you want to use VTK?', 'yes'),
88    ('cc_defines','C/C++ defines to use', None),    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),
89    ('cc_flags','C compiler flags to use (Release build)', cc_flags_default),    ('cc', 'path to C compiler', 'DEFAULT'),
90    ('cc_flags_debug', 'C compiler flags to use (Debug build)', cc_flags_debug_default),    ('cxx', 'path to C++ compiler', 'DEFAULT'),
91    ('cxx_flags', 'C++ compiler flags to use (Release build)', cxx_flags_default),    ('win_cc_name', 'windows C compiler name if needed', 'msvc'),
92    ('cxx_flags_debug', 'C++ compiler flags to use (Debug build)', cxx_flags_debug_default),    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below
93    ('omp_flags', 'OpenMP compiler flags to use (Release build)', ''),    ('cc_flags', 'C/C++ compiler flags to use', '-DEFAULT_1'),
94    ('omp_flags_debug', 'OpenMP compiler flags to use (Debug build)', ''),    ('cc_optim', 'C/C++ optimization flags to use', '-DEFAULT_2'),
95    ('ar_flags', 'Static library archiver flags to use', None),    ('cc_debug', 'C/C++ debug flags to use', '-DEFAULT_3'),
96    ('sys_libs', 'System libraries to link with', None),    ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),
97    ('tar_flags','flags for zip files','-c -z'),    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),
98  # MKL    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),
99    PathOption('mkl_path', 'Path to MKL includes', None),    ('cc_extra', 'Extra C compiler flags', ''),
100    PathOption('mkl_lib_path', 'Path to MKL libs', None),    ('cxx_extra', 'Extra C++ compiler flags', ''),
101    ('mkl_libs', 'MKL libraries to link with', None),    ('ld_extra', 'Extra linker flags', ''),
102  # SCSL    ('sys_libs', 'System libraries to link with', []),
103    PathOption('scsl_path', 'Path to SCSL includes', None),    ('ar_flags', 'Static library archiver flags to use', ''),
104    PathOption('scsl_lib_path', 'Path to SCSL libs', None),    BoolVariable('useopenmp', 'Compile parallel version using OpenMP', 'no'),
105    ('scsl_libs', 'SCSL libraries to link with', None),    BoolVariable('usepedantic', 'Compile with -pedantic if using gcc', 'no'),
106    ('scsl_libs_MPI', 'SCSL libraries to link with for MPI build', None),    BoolVariable('usewarnings','Compile with warnings as errors if using gcc','yes'),
107  # UMFPACK    ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),
108    PathOption('ufc_path', 'Path to UFconfig includes', ufc_path_default),    ('forcecollres','for testing use only - set the default value for force resolving collective ops','leave_alone'),
   PathOption('umf_path', 'Path to UMFPACK includes', umf_path_default),  
   PathOption('umf_lib_path', 'Path to UMFPACK libs', umf_lib_path_default),  
   ('umf_libs', 'UMFPACK libraries to link with', umf_libs_default),  
 # AMD (used by UMFPACK)  
   PathOption('amd_path', 'Path to AMD includes', amd_path_default),  
   PathOption('amd_lib_path', 'Path to AMD libs', amd_lib_path_default),  
   ('amd_libs', 'AMD libraries to link with', amd_libs_default),  
 # ParMETIS  
   ('parmetis_path', 'Path to ParMETIS includes', ''),  
   ('parmetis_lib_path', 'Path to ParMETIS library', ''),  
   ('parmetis_lib', 'ParMETIS library to link with', []),  
 # TRILINOS  
   PathOption('trilinos_path', 'Path to TRILINOS includes', None),  
   PathOption('trilinos_lib_path', 'Path to TRILINOS libs', None),  
   ('trilinos_libs', 'TRILINOS libraries to link with', None),  
 # BLAS  
   PathOption('blas_path', 'Path to BLAS includes', None),  
   PathOption('blas_lib_path', 'Path to BLAS libs', None),  
   ('blas_libs', 'BLAS libraries to link with', None),  
 # netCDF  
   ('useNetCDF', 'switch on/off the usage of netCDF', useNetCDF_default),  
   PathOption('netCDF_path', 'Path to netCDF includes', netCDF_path_default),  
   PathOption('netCDF_lib_path', 'Path to netCDF libs', netCDF_lib_path_default),  
   ('netCDF_libs', 'netCDF C++ libraries to link with', netCDF_libs_default),  
109  # Python  # Python
110  # locations of include files for python    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),
111  # FIXME: python_path should be python_inc_path and the same for boost etc.    ('python_lib_path', 'Path to Python libs', usr_lib),
112    PathOption('python_path', 'Path to Python includes', python_path_default),    ('python_libs', 'Python libraries to link with', [python_version]),
   PathOption('python_lib_path', 'Path to Python libs', python_lib_path_default),  
   ('python_lib', 'Python libraries to link with', python_lib_default),  
113    ('python_cmd', 'Python command', 'python'),    ('python_cmd', 'Python command', 'python'),
114  # Boost  # Boost
115    PathOption('boost_path', 'Path to Boost includes', boost_path_default),    ('boost_path', 'Path to Boost includes', '/usr/include'),
116    PathOption('boost_lib_path', 'Path to Boost libs', boost_lib_path_default),    ('boost_lib_path', 'Path to Boost libs', usr_lib),
117    ('boost_lib', 'Boost libraries to link with', boost_lib_default),    ('boost_libs', 'Boost libraries to link with', ['boost_python']),
118  # Doc building  # NetCDF
119  #  PathOption('doxygen_path', 'Path to Doxygen executable', None),    BoolVariable('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),
120  #  PathOption('epydoc_path', 'Path to Epydoc executable', None),    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),
121  # PAPI    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),
122    PathOption('papi_path', 'Path to PAPI includes', None),    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),
   PathOption('papi_lib_path', 'Path to PAPI libs', None),  
   ('papi_libs', 'PAPI libraries to link with', None),  
   ('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', None),  
123  # MPI  # MPI
124    BoolOption('useMPI', 'Compile parallel version using MPI', useMPI_default),    BoolVariable('useMPI', 'For backwards compatibility', 'no'),
125      BoolVariable('usempi', 'Compile parallel version using MPI', 'no'),
126    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),
127    PathOption('mpi_path', 'Path to MPI includes', mpi_path_default),    ('mpi_path', 'Path to MPI includes', '/usr/include'),
128    ('mpi_run', 'mpirun name' , mpi_run_default),    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),
129    PathOption('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)',mpi_lib_path_default),    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),
130    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', mpi_libs_default)    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', []),
131      ('mpi_flavour','Type of MPI execution environment','none'),
132    # ParMETIS
133      BoolVariable('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),
134      ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),
135      ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),
136      ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),
137    # PAPI
138      BoolVariable('usepapi', 'switch on/off the usage of PAPI', 'no'),
139      ('papi_path', 'Path to PAPI includes', '/usr/include'),
140      ('papi_lib_path', 'Path to PAPI libs', usr_lib),
141      ('papi_libs', 'PAPI libraries to link with', ['papi']),
142      BoolVariable('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),
143    # MKL
144      BoolVariable('usemkl', 'switch on/off the usage of MKL', 'no'),
145      ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),
146      ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),
147      ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),
148    # UMFPACK
149      BoolVariable('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),
150      ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),
151      ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),
152      ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),
153      ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),
154    # Silo
155      BoolVariable('usesilo', 'switch on/off the usage of Silo', 'yes'),
156      ('silo_path', 'Path to Silo includes', '/usr/include'),
157      ('silo_lib_path', 'Path to Silo libs', usr_lib),
158      ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
159    # VisIt
160      BoolVariable('usevisit', 'switch on/off the usage of the VisIt sim library', 'no'),
161      ('visit_path', 'Path to VisIt libsim includes', '/usr/include'),
162      ('visit_lib_path', 'Path to VisIt sim library', usr_lib),
163    # AMD (used by UMFPACK)
164      ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),
165      ('amd_lib_path', 'Path to AMD libs', usr_lib),
166      ('amd_libs', 'AMD libraries to link with', ['amd']),
167    # BLAS (used by UMFPACK)
168      ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),
169      ('blas_lib_path', 'Path to BLAS libs', usr_lib),
170      ('blas_libs', 'BLAS libraries to link with', ['blas']),
171    #Lapack options
172      BoolVariable('uselapack','switch on/off use of Lapack','no'),
173      ('lapack_path', 'Path to Lapack includes','/usr/include'),
174      ('lapack_lib_path', 'Path to Lapack libs', usr_lib),
175      ('lapack_libs', 'Lapack libraries to link with', []),
176      ('lapack_type', '{clapack,mkl}','clapack'),
177    # An option for specifying the compiler tools set (see windows branch).
178      ('tools_names', 'allow control over the tools in the env setup', ['default']),
179    # finer control over library building, intel aggressive global optimisation
180    # works with dynamic libraries on windows.
181      ('share_esysUtils', 'control static or dynamic esysUtils lib', False),
182      ('share_paso', 'control static or dynamic paso lib', False),
183      ('env_export','Environment variables to be passed to children',[]),
184    #To enable passing function pointers through python
185      BoolVariable('iknowwhatimdoing','allow nonstandard C',False)
186  )  )
187  #=================================================================================================  
188  #  
189  #   Note: On the Altix the intel compilers are not automatically  ###################
190  #   detected by scons intelc.py script. The Altix has a different directory  
191  #   path and in some locations the "modules" facility is used to support  # This is only to support old versions of scons which don't accept
192  #   multiple compiler versions. This forces the need to import the users PATH  # the variant_dir parameter (older than 0.98 I think).
193  #   environment which isn't the "scons way"  # Once these are no longer an issue we can go back to a direct call
194  #   This doesn't impact linux and windows which will use the default compiler (g++ or msvc, or the intel compiler if it is installed on both platforms)  # to obj.SConscript
195  #   FIXME: Perhaps a modification to intelc.py will allow better support for ia64 on altix  import SCons
196  #  vs=SCons.__version__.split('.')
197    cantusevariantdir=float(vs[0]+'.'+vs[1])<0.98
198    
199    
200    def CallSConscript(obj, **kw):
201        if cantusevariantdir:
202            if 'variant_dir' in kw:
203            kw['build_dir']=kw['variant_dir']
204            del kw['variant_dir']
205        obj.SConscript(**kw)
206    
207    
208    ############ Specify which compilers to use ####################
209    
210    # intelc uses regular expressions improperly and emits a warning about
211    # failing to find the compilers.  This warning can be safely ignored.
212    
213  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
214        env = Environment(tools = ['default', 'msvc'], options = opts)        env = Environment(options = opts)
215        #env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default'] + env['tools_names'],
216                            options = opts)
217  else:  else:
218     if socket.gethostname().split('.')[0] == 'service0':     if os.uname()[4]=='ia64':
       env = Environment(tools = ['default', 'intelc'], options = opts)  
    elif os.uname()[4]=='ia64':  
219        env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default', 'intelc'], options = opts)
220        if env['CXX'] == 'icpc':        if env['CXX'] == 'icpc':
221           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not). FIXME: this behaviour could be directly incorporated into scons intelc.py           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)
222     else:     else:
223        env = Environment(tools = ['default'], options = opts)        env = Environment(tools = ['default'], options = opts)
224          if env['tools_names']!='default':
225        env=Environment(tools = ['default'] +env['tools_names'], options=opts)
226    
227    # Override compiler choice if provided
228    if env['cc'] != 'DEFAULT': env['CC']=env['cc']
229    if env['cxx'] != 'DEFAULT': env['CXX']=env['cxx']
230    
231  Help(opts.GenerateHelpText(env))  Help(opts.GenerateHelpText(env))
232    
233  if env['bounds_check']:  ############ Make sure target directories exist ################
234     env.Append(CPPDEFINES = [ 'BOUNDS_CHECK' ])  
235     env.Append(CXXDEFINES = [ 'BOUNDS_CHECK' ])  if not os.path.isdir(env['bininstall']):
236     bounds_check = env['bounds_check']      os.makedirs(env['bininstall'])
237    if not os.path.isdir(env['libinstall']):
238        os.makedirs(env['libinstall'])
239    if not os.path.isdir(env['pyinstall']):
240        os.makedirs(env['pyinstall'])
241    
242    ########## Copy required environment vars ######################
243    
244    for i in env['env_export']:
245       env.Append(ENV = {i:os.environ[i]})
246    
247    ############ Fill in compiler options if not set above #########
248    
249    # Backwards compatibility: allow dodebug=yes and useMPI=yes
250    if env['dodebug']: env['usedebug'] = 1
251    if env['useMPI']: env['usempi'] = 1
252    
253    # Default compiler options (override allowed in hostname_options.py, but should not be necessary)
254    # For both C and C++ you get: cc_flags and either the optim flags or debug flags
255    
256    sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.
257    
258    cc_flags = ""
259    cc_optim = ""
260    cc_debug = ""
261    omp_optim = ""
262    omp_debug = ""
263    omp_libs = []
264    
265    if env["CC"] == "icc":
266      # Intel compilers
267      cc_flags      = "-std=c99 -fPIC -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
268      cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias -ip"
269      cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
270      omp_optim     = "-openmp -openmp_report0"
271      omp_debug     = "-openmp -openmp_report0"
272      omp_libs      = ['guide', 'pthread']
273      pedantic      = ""
274      fatalwarning      = ""        # Switch to turn warnings into errors
275      sysheaderopt      = ""
276    elif env["CC"][:3] == "gcc":
277      # GNU C on any system
278      cc_flags      = "-pedantic -Wall -fPIC -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"
279    #the long long warning occurs on the Mac
280      cc_optim      = "-O3"
281      cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
282      omp_optim     = "-fopenmp"
283      omp_debug     = "-fopenmp"
284      omp_libs      = []
285      pedantic      = "-pedantic-errors -Wno-long-long"
286      fatalwarning      = "-Werror"
287      sysheaderopt      = "-isystem "
288    elif env["CC"] == "cl":
289      # Microsoft Visual C on Windows
290      cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"
291      cc_optim      = "/O2 /Op /MT /W3"
292      cc_debug      = "/Od /RTC1 /MTd /ZI -DBOUNDS_CHECK"
293      omp_optim     = ""
294      omp_debug     = ""
295      omp_libs      = []
296      pedantic      = ""
297      fatalwarning      = ""
298      sysheaderopt      = ""
299    elif env["CC"] == "icl":
300      # intel C on Windows, see windows_intelc_options.py for a start
301      pedantic      = ""
302      fatalwarning      = ""
303      sysheaderopt      = ""
304    
305    
306    # If not specified in hostname_options.py then set them here
307    if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags
308    if env["cc_optim"]  == "-DEFAULT_2": env['cc_optim'] = cc_optim
309    if env["cc_debug"]  == "-DEFAULT_3": env['cc_debug'] = cc_debug
310    if env["omp_optim"] == "-DEFAULT_4": env['omp_optim'] = omp_optim
311    if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug
312    if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs
313    
314    #set up the autolazy values
315    if env['forcelazy']    != "leave_alone":
316      if env['forcelazy'] == 'on':
317        env.Append(CPPDEFINES=['FAUTOLAZYON'])
318      else:
319         if env['forcelazy'] == 'off':
320        env.Append(CPPDEFINES=['FAUTOLAZYOFF'])
321    
322    #set up the colective resolve values
323    if env['forcecollres']    != "leave_alone":
324      print env['forcecollres']
325      if env['forcecollres'] == 'on':
326        env.Append(CPPDEFINES=['FRESCOLLECTON'])
327      else:
328         if env['forcecollres'] == 'off':
329        env.Append(CPPDEFINES=['FRESCOLLECTOFF'])
330    
331    
332    if env['iknowwhatimdoing']:
333        env.Append(CPPDEFINES=['IKNOWWHATIMDOING'])
334    
335    # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty
336    if not env["useopenmp"]:
337      env['omp_optim'] = ""
338      env['omp_debug'] = ""
339      env['omp_libs'] = []
340    
341    if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0
342    
343    # Windows doesn't use LD_LIBRARY_PATH but PATH instead
344    if IS_WINDOWS_PLATFORM:
345        LD_LIBRARY_PATH_KEY='PATH'
346        env['ENV']['LD_LIBRARY_PATH']=''
347  else:  else:
348     bounds_check = 0      LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'
349    ############ Copy environment variables into scons env #########
350    
351  #=================================================================================================  try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']
352  #  except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1
 #     Initialise Scons Build Environment  
 #     check for user environment variables we are interested in  
 try:  
    tmp = os.environ['PYTHONPATH']  
    env['ENV']['PYTHONPATH'] = tmp  
 except KeyError:  
    pass  
353    
354  env.PrependENVPath('PYTHONPATH', source_root)  try: env['ENV']['ESCRIPT_NUM_THREADS'] = os.environ['ESCRIPT_NUM_THREADS']
355    except KeyError: pass
356    
357  try:  try: env['ENV']['ESCRIPT_NUM_PROCS'] = os.environ['ESCRIPT_NUM_PROCS']
358     omp_num_threads = os.environ['OMP_NUM_THREADS']  except KeyError: env['ENV']['ESCRIPT_NUM_PROCS']=1
 except KeyError:  
    omp_num_threads = 1  
 env['ENV']['OMP_NUM_THREADS'] = omp_num_threads  
359    
360  try:  try: env['ENV']['ESCRIPT_NUM_NODES'] = os.environ['ESCRIPT_NUM_NODES']
361     path = os.environ['PATH']  except KeyError: env['ENV']['ESCRIPT_NUM_NODES']=1
    env['ENV']['PATH'] = path  
 except KeyError:  
    omp_num_threads = 1  
362    
363  env['ENV']['OMP_NUM_THREADS'] = omp_num_threads  try: env['ENV']['ESCRIPT_HOSTFILE'] = os.environ['ESCRIPT_HOSTFILE']
364    except KeyError: pass
365    
366    try: env['ENV']['PATH'] = os.environ['PATH']
367    except KeyError: pass
368    
369  # Copy some variables from the system environment to the build environment  try: env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
370  try:  except KeyError: pass
    env['ENV']['DISPLAY'] = os.environ['DISPLAY']  
    env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']  
    home_temp = os.environ['HOME']   # MPICH2's mpd needs $HOME to find $HOME/.mpd.conf  
    env['ENV']['HOME'] = home_temp  
 except KeyError:  
    pass  
371    
372  try:  try: env['ENV']['C_INCLUDE_PATH'] = os.environ['C_INCLUDE_PATH']
373     tmp = os.environ['PATH']  except KeyError: pass
    env['ENV']['PATH'] = tmp  
 except KeyError:  
    pass  
374    
375  try:  try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']
376     tmp = os.environ['LD_LIBRARY_PATH']  except KeyError: pass
    env['ENV']['LD_LIBRARY_PATH'] = tmp  
 except KeyError:  
    pass  
 #==========================================================================  
 #  
 #    Add some customer builders  
 #  
 py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  
 env.Append(BUILDERS = {'PyCompile' : py_builder});  
377    
378  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed',  try: env.PrependENVPath(LD_LIBRARY_PATH_KEY,os.environ['LD_LIBRARY_PATH'])
379                                src_suffix=env['PROGSUFFIX'], single_source=True)  except KeyError: pass
380    
381  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']
382    except KeyError: pass
383    
384  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  try: env['ENV']['DISPLAY'] = os.environ['DISPLAY']
385  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  except KeyError: pass
386    
387  # Convert the options which are held in environment variable into python variables for ease of handling and configure compilation options  try: env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']
388  try:  except KeyError: pass
    incinstall = env['incinstall']  
    env.Append(CPPPATH = [incinstall,])  
 except KeyError:  
    incinstall = None  
 try:  
    libinstall = env['libinstall']  
    env.Append(LIBPATH = [libinstall,]) # Adds -L for building of libescript.so libfinley.so escriptcpp.so finleycpp.so  
    env.PrependENVPath('LD_LIBRARY_PATH', libinstall)  
    if IS_WINDOWS_PLATFORM :  
       env.PrependENVPath('PATH', libinstall)  
       env.PrependENVPath('PATH', env['boost_lib_path'])  
 except KeyError:  
    libinstall = None  
 try:  
    pyinstall = env['pyinstall'] # all targets will install into pyinstall/esys but PYTHONPATH points at straight pyinstall so you go import esys.escript etc  
 except KeyError:  
    pyinstall = None  
389    
390  try:  try: env['ENV']['HOME'] = os.environ['HOME']
391     cc_defines = env['cc_defines']  except KeyError: pass
    env.Append(CPPDEFINES = cc_defines)  
 except KeyError:  
    pass  
 try:  
    flags = env['ar_flags']  
    env.Append(ARFLAGS = flags)  
 except KeyError:  
    ar_flags = None  
 try:  
    sys_libs = env['sys_libs']  
 except KeyError:  
    sys_libs = []  
392    
393  try:  # Configure for test suite
    tar_flags = env['tar_flags']  
    env.Replace(TARFLAGS = tar_flags)  
 except KeyError:  
    pass  
394    
 try:  
    exinstall = env['exinstall']  
 except KeyError:  
    exinstall = None  
 try:  
    sys_libinstall = env['sys_libinstall']  
 except KeyError:  
    sys_libinstall = None  
 try:  
    sys_pyinstall = env['sys_pyinstall']  
 except KeyError:  
    sys_pyinstall = None  
 try:  
    sys_exinstall = env['sys_exinstall']  
 except KeyError:  
    sys_exinstall = None  
395    
396  # ====================== debugging ===================================  env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
397  try:  env.PrependENVPath('PYTHONPATH', prefix)
398     dodebug = env['dodebug']  env['ENV']['ESCRIPT_ROOT'] = prefix
 except KeyError:  
    dodebug = None  
399    
400  # === switch on omp ===================================================  ############ Set up paths for Configure() ######################
401  try:  
402    omp_flags = env['omp_flags']  # Make a copy of an environment
403  except KeyError:  # Use env.Clone if available, but fall back on env.Copy for older version of scons
404    omp_flags = ''  def clone_env(env):
405      if 'Clone' in dir(env): return env.Clone()    # scons-0.98
406      else:                   return env.Copy() # scons-0.96
407    
408    # Add cc option -I<Escript>/trunk/include
409    env.Append(CPPPATH      = [Dir('include')])
410    
411    # Add cc option -L<Escript>/trunk/lib
412    env.Append(LIBPATH      = [Dir(env['libinstall'])])
413    
414    if env['cc_extra'] != '': env.Append(CFLAGS = env['cc_extra'])
415    if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
416    if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])
417    
418    if env['usepedantic']: env.Append(CCFLAGS = pedantic)
419    
420    # MS Windows
421    if IS_WINDOWS_PLATFORM:
422      env.AppendENVPath('PATH', [env['boost_lib_path']])
423      env.AppendENVPath('PATH', [env['libinstall']])
424      if not env['share_esysUtils'] :
425        env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
426      if not env['share_paso'] :
427        env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
428    
429      if env['usenetcdf']:
430        env.AppendENVPath('PATH',   [env['netCDF_lib_path']])
431    
432    env.Append(ARFLAGS = env['ar_flags'])
433    
434    # Get the global Subversion revision number for getVersion() method
435  try:  try:
436    omp_flags_debug = env['omp_flags_debug']     global_revision = os.popen("svnversion -n .").read()
437  except KeyError:     global_revision = re.sub(":.*", "", global_revision)
438    omp_flags_debug = ''     global_revision = re.sub("[^0-9]", "", global_revision)
439    except:
440       global_revision="-1"
441    if global_revision == "": global_revision="-2"
442    env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])
443    
444    ############ numpy (required) ###############################
445    
 # ========= use mpi? =====================================================  
446  try:  try:
447     useMPI = env['useMPI']    from numpy import identity
448  except KeyError:  except ImportError:
449     useMPI = None    print "Cannot import numpy, you need to set your PYTHONPATH"
450  # ========= set compiler flags ===========================================    sys.exit(1)
451    
452  if dodebug:  ############ C compiler (required) #############################
453      try:  
454        flags = env['cc_flags_debug'] + ' ' + omp_flags_debug  # Create a Configure() environment for checking existence of required libraries and headers
455        env.Append(CCFLAGS = flags)  conf = Configure(clone_env(env))
456      except KeyError:  
457        pass  # Test that the compiler is working
458    if not conf.CheckFunc('printf'):
459       print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])
460       sys.exit(1)
461    
462    if conf.CheckFunc('gethostname'):
463      conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])
464    
465    ############ python libraries (required) #######################
466    
467    
468    if not sysheaderopt =="":
469      conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])
470  else:  else:
471     try:    conf.env.AppendUnique(CPPPATH     = [env['python_path']])
472        flags = env['cc_flags'] + ' ' + omp_flags  
473        env.Append(CCFLAGS = flags)  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])
474     except KeyError:  conf.env.AppendUnique(LIBS      = [env['python_libs']])
       pass  
 if dodebug:  
      try:  
         flags = env['cxx_flags_debug']  
         env.Append(CXXFLAGS = flags)  
      except KeyError:  
         pass  
 else:  
      try:  
         flags = env['cxx_flags']  
         env.Append(CXXFLAGS = flags)  
      except KeyError:  
         pass  
 try:  
      if env['CC'] == 'gcc': env.Append(CCFLAGS = "-pedantic-errors -Wno-long-long")  
 except:  
      pass  
475    
476  # ============= Remember what options were used in the compile =====================================  conf.env.PrependENVPath('PYTHONPATH', prefix)
477    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['python_lib_path'])    # The wrapper script needs to find these libs
478    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
479    
480    if not conf.CheckCHeader('Python.h'):
481      print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])
482      sys.exit(1)
483    if not conf.CheckFunc('Py_Exit'):
484      print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])
485      sys.exit(1)
486    
487    ############ boost (required) ##################################
488    
489    if not sysheaderopt =="":
490    # This is required because we can't -isystem /usr/system because it breaks std includes
491      if os.path.normpath(env['boost_path']) =="/usr/include":
492        conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))
493      else:
494        conf.env.Append(CCFLAGS=sysheaderopt+env['boost_path'])
495    else:
496      conf.env.AppendUnique(CPPPATH     = [env['boost_path']])
497    
498    conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])
499    conf.env.AppendUnique(LIBS      = [env['boost_libs']])
500    
501    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['boost_lib_path']) # The wrapper script needs to find these libs
502    #ensure that our path entries remain at the front
503    conf.env.PrependENVPath('PYTHONPATH', prefix)
504    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
505    
506    
507    #Yep we still cant figure this one out. - working on it.
508  if not IS_WINDOWS_PLATFORM:  if not IS_WINDOWS_PLATFORM:
509    env.Execute("/bin/rm -f " + libinstall + "/Compiled.with.*")    if not conf.CheckCXXHeader('boost/python.hpp'):
510    if dodebug:       env.Execute("touch " + libinstall + "/Compiled.with.debug")      print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])
511    if useMPI:        env.Execute("touch " + libinstall + "/Compiled.with.mpi")      sys.exit(1)
512    if omp_flags != '':   env.Execute("touch " + libinstall + "/Compiled.with.OpenMP")  
513    if bounds_check:  env.Execute("touch " + libinstall + "/Compiled.with.bounds_check")    if not conf.CheckFunc('PyObject_SetAttr'):
514        print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])
515        sys.exit(1)
516    
517    
518    # Commit changes to environment
519    env = conf.Finish()
520    
521    ############ VTK (optional) ####################################
522    
523    if env['usevtk']:
524      try:
525        import vtk
526        env['usevtk'] = 1
527      except ImportError:
528        env['usevtk'] = 0
529    
530    # Add VTK to environment env if it was found
531    if env['usevtk']:
532      env.Append(CPPDEFINES = ['USE_VTK'])
533    
534    ############ NetCDF (optional) #################################
535    
536    conf = Configure(clone_env(env))
537    
538    if env['usenetcdf']:
539      conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])
540      conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])
541      conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])
542      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['netCDF_lib_path'])  # The wrapper script needs to find these libs
543      #ensure that our path entries remain at the front
544      conf.env.PrependENVPath('PYTHONPATH', prefix)
545      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
546    
547    if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0
548    if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0
549    
550    # Add NetCDF to environment env if it was found
551    if env['usenetcdf']:
552      env = conf.Finish()
553      env.Append(CPPDEFINES = ['USE_NETCDF'])
554    else:
555      conf.Finish()
556    
557  # ============= set mkl (but only of no MPI) =====================================  ############ PAPI (optional) ###################################
 if not useMPI:  
    try:  
       includes = env['mkl_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
558    
559     try:  # Start a new configure environment that reflects what we've already found
560        lib_path = env['mkl_lib_path']  conf = Configure(clone_env(env))
       env.Append(LIBPATH = [lib_path,])  
       env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    except KeyError:  
       pass  
561    
562     try:  if env['usepapi']:
563        mkl_libs = env['mkl_libs']    conf.env.AppendUnique(CPPPATH = [env['papi_path']])
564     except KeyError:    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])
565        mkl_libs = []    conf.env.AppendUnique(LIBS    = [env['papi_libs']])
566      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['papi_lib_path'])    # The wrapper script needs to find these libs
567      #ensure that our path entries remain at the front
568      conf.env.PrependENVPath('PYTHONPATH', prefix)
569      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
570    
571    if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0
572    if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0
573    
574    # Add PAPI to environment env if it was found
575    if env['usepapi']:
576      env = conf.Finish()
577      env.Append(CPPDEFINES = ['BLOCKPAPI'])
578  else:  else:
579       mkl_libs = []    conf.Finish()
580    
581  # ============= set scsl (but only of no MPI) =====================================  ############ MKL (optional) ####################################
 if not useMPI:  
    try:  
       includes = env['scsl_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
582    
583     try:  # Start a new configure environment that reflects what we've already found
584        lib_path = env['scsl_lib_path']  conf = Configure(clone_env(env))
       env.Append(LIBPATH = [lib_path,])  
       env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    except KeyError:  
       pass  
     
    try:  
       scsl_libs = env['scsl_libs']  
    except KeyError:  
       scsl_libs = [ ]  
585    
586    if env['usemkl']:
587      conf.env.AppendUnique(CPPPATH = [env['mkl_path']])
588      conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])
589      conf.env.AppendUnique(LIBS    = [env['mkl_libs']])
590      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['mkl_lib_path']) # The wrapper script needs to find these libs
591      #ensure that our path entries remain at the front
592      conf.env.PrependENVPath('PYTHONPATH', prefix)
593      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
594    
595    if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0
596    if env['usemkl'] and not conf.CheckFunc('pardiso'): env['usemkl'] = 0
597    
598    
599    # Add MKL to environment env if it was found
600    if env['usemkl']:
601      env = conf.Finish()
602      env.Append(CPPDEFINES = ['MKL'])
603  else:  else:
604      scsl_libs =  []    conf.Finish()
605    
606  # ============= set TRILINOS (but only with MPI) =====================================  ############ UMFPACK (optional) ################################
 if useMPI:  
    try:  
       includes = env['trilinos_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
607    
608     try:  # Start a new configure environment that reflects what we've already found
609        lib_path = env['trilinos_lib_path']  conf = Configure(clone_env(env))
       env.Append(LIBPATH = [lib_path,])  
    except KeyError:  
       pass  
610    
611     try:  if env['useumfpack']:
612        trilinos_libs = env['trilinos_libs']    conf.env.AppendUnique(CPPPATH = [env['ufc_path']])
613     except KeyError:    conf.env.AppendUnique(CPPPATH = [env['umf_path']])
614        trilinos_libs = []    conf.env.AppendUnique(LIBPATH = [env['umf_lib_path']])
615      conf.env.AppendUnique(LIBS    = [env['umf_libs']])
616      conf.env.AppendUnique(CPPPATH = [env['amd_path']])
617      conf.env.AppendUnique(LIBPATH = [env['amd_lib_path']])
618      conf.env.AppendUnique(LIBS    = [env['amd_libs']])
619      conf.env.AppendUnique(CPPPATH = [env['blas_path']])
620      conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])
621      conf.env.AppendUnique(LIBS    = [env['blas_libs']])
622      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['umf_lib_path']) # The wrapper script needs to find these libs
623      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['amd_lib_path']) # The wrapper script needs to find these libs
624      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['blas_lib_path'])    # The wrapper script needs to find these libs
625      #ensure that our path entries remain at the front
626      conf.env.PrependENVPath('PYTHONPATH', prefix)
627      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
628    
629    if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0
630    if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0
631    # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?
632    
633    # Add UMFPACK to environment env if it was found
634    if env['useumfpack']:
635      env = conf.Finish()
636      env.Append(CPPDEFINES = ['UMFPACK'])
637  else:  else:
638       trilinos_libs = []    conf.Finish()
639    
640    ############ Silo (optional) ###################################
641    
642  # ============= set umfpack (but only without MPI) =====================================  if env['usesilo']:
643  umf_libs=[ ]    conf = Configure(clone_env(env))
644  if not useMPI:    conf.env.AppendUnique(CPPPATH = [env['silo_path']])
645     try:    conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])
646        includes = env['umf_path']    conf.env.AppendUnique(LIBS = [env['silo_libs']])
647        env.Append(CPPPATH = [includes,])    if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0
648     except KeyError:    if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0
649        pass    conf.Finish()
650    
651    # Add the path to Silo to environment env if it was found.
652    # Note that we do not add the libs since they are only needed for the
653    # weipa library and tools.
654    if env['usesilo']:
655      env.AppendUnique(CPPPATH = [env['silo_path']])
656      env.AppendUnique(LIBPATH = [env['silo_lib_path']])
657    
658    ############ VisIt (optional) ###################################
659    
660    if env['usevisit']:
661      env.AppendUnique(CPPPATH = [env['visit_path']])
662      env.AppendUnique(LIBPATH = [env['visit_lib_path']])
663    
664    ########### Lapack (optional) ##################################
665    
666    if env['uselapack']:
667        env.AppendUnique(CPPDEFINES='USE_LAPACK')
668        env.AppendUnique(CPPPATH = [env['lapack_path']])
669        env.AppendUnique(LIBPATH =[env['lapack_lib_path']])
670    
671        env.Append(LIBPATH = '/usr/lib/atlas')
672        env.Append(LIBS = [env['lapack_libs']])
673        if env['lapack_type']=='mkl':
674           if not env['usemkl']:
675            env['uselapack']=0
676            print "mkl_lapack requires mkl"
677           else:
678            env.AppendUnique(CPPDEFINES='MKL_LAPACK')
679          
680    
681    ############ Add the compiler flags ############################
682    
683    # Enable debug by choosing either cc_debug or cc_optim
684    if env['usedebug']:
685      env.Append(CCFLAGS        = env['cc_debug'])
686      env.Append(CCFLAGS        = env['omp_debug'])
687    else:
688      env.Append(CCFLAGS        = env['cc_optim'])
689      env.Append(CCFLAGS        = env['omp_optim'])
690    
691     try:  # Always use cc_flags
692        lib_path = env['umf_lib_path']  env.Append(CCFLAGS      = env['cc_flags'])
693        env.Append(LIBPATH = [lib_path,])  env.Append(LIBS         = [env['omp_libs']])
    except KeyError:  
       pass  
694    
695     try:  ############ Add some custom builders ##########################
       umf_libs = env['umf_libs']  
       umf_libs+=umf_libs  
    except KeyError:  
       pass  
696    
697     try:  py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
698        includes = env['ufc_path']  env.Append(BUILDERS = {'PyCompile' : py_builder});
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
699    
700     try:  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
701        includes = env['amd_path']  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
702    
703     try:  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
704        lib_path = env['amd_lib_path']  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
       env.Append(LIBPATH = [lib_path,])  
    except KeyError:  
       pass  
705    
706     try:  epstopdfbuilder = Builder(action = scons_extensions.eps2pdf, suffix=".pdf", src_suffix=".eps", single_source=True)
707        amd_libs = env['amd_libs']  env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
       umf_libs+=amd_libs  
    except KeyError:  
       pass  
708    
709  # ============= set TRILINOS (but only with MPI) =====================================  ############ MPI (optional) ####################################
710  if useMPI:  if not env['usempi']: env['mpi_flavour']='none'
    try:  
       includes = env['trilinos_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
711    
712     try:  # Create a modified environment for MPI programs (identical to env if usempi=no)
713        lib_path = env['trilinos_lib_path']  env_mpi = clone_env(env)
       env.Append(LIBPATH = [lib_path,])  
    except KeyError:  
       pass  
714    
715     try:  # Start a new configure environment that reflects what we've already found
716        trilinos_libs = env['trilinos_libs']  conf = Configure(clone_env(env_mpi))
717     except KeyError:  
718        trilinos_libs = []  if env_mpi['usempi']:
719      VALID_MPIs=[ "MPT", "MPICH", "MPICH2", "OPENMPI", "INTELMPI" ]
720      if not env_mpi['mpi_flavour'] in VALID_MPIs:
721          raise ValueError,"MPI is enabled but mpi_flavour = %s is not a valid key from %s."%( env_mpi['mpi_flavour'],VALID_MPIs)
722      conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])
723      conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])
724      conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])
725      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['mpi_lib_path']) # The wrapper script needs to find these libs
726      #ensure that our path entries remain at the front
727      conf.env.PrependENVPath('PYTHONPATH', prefix)
728      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
729    
730    if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0
731    # if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0
732    
733    # Add MPI to environment env_mpi if it was found
734    if env_mpi['usempi']:
735      env_mpi = conf.Finish()
736      env_mpi.Append(CPPDEFINES = ['PASO_MPI', 'MPI_NO_CPPBIND', env_mpi['MPICH_IGNORE_CXX_SEEK']])
737      # NetCDF 4.1 defines MPI_Comm et al. if MPI_INCLUDED is not defined!
738      # On the other hand MPT and OpenMPI don't define the latter so we have to
739      # do that here
740      if env['usenetcdf'] and env_mpi['mpi_flavour'] in ["MPT","OPENMPI"]:
741        env_mpi.Append(CPPDEFINES = ['MPI_INCLUDED'])
742  else:  else:
743       trilinos_libs = []    conf.Finish()
744    
745  # ============= set blas =====================================  env['usempi'] = env_mpi['usempi']
 try:  
    includes = env['blas_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
746    
747  try:  ############ ParMETIS (optional) ###############################
    lib_path = env['blas_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
748    
749  try:  # Start a new configure environment that reflects what we've already found
750     blas_libs = env['blas_libs']  conf = Configure(clone_env(env_mpi))
 except KeyError:  
    blas_libs = [ ]  
751    
752  # ========== netcdf ====================================  if not env_mpi['usempi']: env_mpi['useparmetis'] = 0
 try:  
    useNetCDF = env['useNetCDF']  
 except KeyError:  
    useNetCDF = 'yes'  
    pass  
       
 if useNetCDF == 'yes':  
    try:  
       netCDF_libs = env['netCDF_libs']  
    except KeyError:  
       pass  
753    
754     env.Append(LIBS = netCDF_libs)  if env_mpi['useparmetis']:
755     env.Append(CPPDEFINES = [ 'USE_NETCDF' ])    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])
756     try:    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])
757        includes = env['netCDF_path']    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])
758        env.Append(CPPPATH = [includes,])    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['parmetis_lib_path'])    # The wrapper script needs to find these libs
759     except KeyError:    #ensure that our path entries remain at the front
760        pass    conf.env.PrependENVPath('PYTHONPATH', prefix)
761      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
762    
763     try:  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0
764        lib_path = env['netCDF_lib_path']  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0
765        env.Append(LIBPATH = [ lib_path, ])  
766        env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  # Add ParMETIS to environment env_mpi if it was found
767        if IS_WINDOWS_PLATFORM :  if env_mpi['useparmetis']:
768           env.PrependENVPath('PATH', lib_path)    env_mpi = conf.Finish()
769     except KeyError:    env_mpi.Append(CPPDEFINES = ['USE_PARMETIS'])
       pass  
770  else:  else:
771     print "Warning: Installation is not configured with netCDF. Some I/O function may not be available."    conf.Finish()
    netCDF_libs=[ ]  
772    
773  # ====================== boost ======================================  env['useparmetis'] = env_mpi['useparmetis']
 try:  
    includes = env['boost_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['boost_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
    env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    if IS_WINDOWS_PLATFORM :  
       env.PrependENVPath('PATH', lib_path)  
 except KeyError:  
    pass  
 try:  
    boost_lib = env['boost_lib']  
 except KeyError:  
    boost_lib = None  
 # ====================== python ======================================  
 try:  
    includes = env['python_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['python_lib_path']  
    env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    python_lib = env['python_lib']  
 except KeyError:  
    python_lib = None  
 # =============== documentation =======================================  
 try:  
    doxygen_path = env['doxygen_path']  
 except KeyError:  
    doxygen_path = None  
 try:  
    epydoc_path = env['epydoc_path']  
 except KeyError:  
    epydoc_path = None  
 # =============== ParMETIS =======================================  
 try:  
    parmetis_path = env['parmetis_path']  
    parmetis_lib_path = env['parmetis_lib_path']  
    parmetis_lib = env['parmetis_lib']  
 except KeyError:  
    parmetis_path = ''  
    parmetis_lib_path = ''  
    parmetis_lib = ''  
   
 if useMPI and os.path.isdir(parmetis_lib_path):  
    env.Append(CPPDEFINES = [ 'PARMETIS' ])  
    env.Append(CXXDEFINES = [ 'PARMETIS' ])  
    env.Append(CPPPATH = [parmetis_path])  
    env.Append(LIBPATH = [parmetis_lib_path])  
    env.Append(LIBS = parmetis_lib)  
 # =============== PAPI =======================================  
 try:  
    includes = env['papi_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['papi_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    papi_libs = env['papi_libs']  
 except KeyError:  
    papi_libs = None  
 # ============= set mpi =====================================  
 if useMPI:  
    env.Append(CPPDEFINES=['PASO_MPI',])  
    try:  
       includes = env['mpi_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
    try:  
       lib_path = env['mpi_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
       env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    except KeyError:  
       pass  
    try:  
       mpi_libs = env['mpi_libs']  
    except KeyError:  
       mpi_libs = []  
774    
775     try:  ############ Summarize our environment #########################
       mpi_run = env['mpi_run']  
    except KeyError:  
       mpi_run = ''  
776    
777     try:  print ""
778         mpich_ignore_cxx_seek=env['MPICH_IGNORE_CXX_SEEK']  print "Summary of configuration (see ./config.log for information)"
779         env.Append(CPPDEFINES = [ mpich_ignore_cxx_seek ] )  print " Using python libraries"
780     except KeyError:  print " Using numpy"
781        pass  print " Using boost"
782  else:  if env['usenetcdf']: print "    Using NetCDF"
783    mpi_libs=[]  else: print "   Not using NetCDF"
784    mpi_run = mpi_run_default  if env['usevtk']: print "   Using VTK"
785  # =========== zip files ===========================================  else: print "   Not using VTK"
786  try:  if env['usevisit']: print " Using VisIt"
787     includes = env['papi_path']  else: print "   Not using VisIt"
788     env.Append(CPPPATH = [includes,])  if env['usemkl']: print "   Using MKL"
789  except KeyError:  else: print "   Not using MKL"
790     pass  if env['useumfpack']: print "   Using UMFPACK"
791  try:  else: print "   Not using UMFPACK"
792     lib_path = env['papi_lib_path']  if env['usesilo']: print "  Using Silo"
793     env.Append(LIBPATH = [lib_path,])  else: print "   Not using Silo"
794  except KeyError:  if env['useopenmp']: print "    Using OpenMP"
795     pass  else: print "   Not using OpenMP"
796  try:  if env['usempi']: print "   Using MPI (flavour = %s)"%env['mpi_flavour']
797     papi_libs = env['papi_libs']  else: print "   Not using MPI"
798  except KeyError:  if env['useparmetis']: print "  Using ParMETIS"
799     papi_libs = None  else: print "   Not using ParMETIS (requires MPI)"
800  try:  if env['usepapi']: print "  Using PAPI"
801     papi_instrument_solver = env['papi_instrument_solver']  else: print "   Not using PAPI"
802  except KeyError:  if env['uselapack']: print "    Using Lapack"
803     papi_instrument_solver = None  else: print "   Not using Lapack"
804    if env['usedebug']: print " Compiling for debug"
805    else: print "   Not compiling for debug"
806    print " Installing in", prefix
807    if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"
808    else: print "   Not treating warnings as errors"
809    print ""
810    
811    ############ Delete option-dependent files #####################
812    
813    Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.debug")))
814    Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.mpi")))
815    Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.openmp")))
816    Execute(Delete(os.path.join(env['libinstall'],"buildvars")))
817    if not env['usempi']: Execute(Delete(os.path.join(env['libinstall'],"pythonMPI")))
818    
819    
820    ############ Build the subdirectories ##########################
821    
822    if env['usepedantic']: env_mpi.Append(CCFLAGS = pedantic)
823    
824    
825    from grouptest import *
826    
827    TestGroups=[]
828    
829    dodgy_env=clone_env(env_mpi)    # Environment without pedantic options
830    
831    ############ Now we switch on Warnings as errors ###############
832    
833    #this needs to be done after configuration because the scons test files have warnings in them
834    
835    if ((fatalwarning != "") and (env['usewarnings'])):
836      env.Append(CCFLAGS        = fatalwarning)
837      env_mpi.Append(CCFLAGS        = fatalwarning)
838    
839    
840    Export(
841      ["env",
842       "env_mpi",
843       "clone_env",
844       "dodgy_env",
845       "IS_WINDOWS_PLATFORM",
846       "TestGroups",
847       "CallSConscript",
848       "cantusevariantdir"
849       ]
850      )
851    
852    CallSConscript(env, dirs = ['tools/CppUnitTest/src'], variant_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
853    CallSConscript(env, dirs = ['tools/escriptconvert'], variant_dir='build/$PLATFORM/tools/escriptconvert', duplicate=0)
854    CallSConscript(env, dirs = ['paso/src'], variant_dir='build/$PLATFORM/paso', duplicate=0)
855    CallSConscript(env, dirs = ['weipa/src'], variant_dir='build/$PLATFORM/weipa', duplicate=0)
856    CallSConscript(env, dirs = ['escript/src'], variant_dir='build/$PLATFORM/escript', duplicate=0)
857    CallSConscript(env, dirs = ['esysUtils/src'], variant_dir='build/$PLATFORM/esysUtils', duplicate=0)
858    CallSConscript(env, dirs = ['finley/src'], variant_dir='build/$PLATFORM/finley', duplicate=0)
859    CallSConscript(env, dirs = ['modellib/py_src'], variant_dir='build/$PLATFORM/modellib', duplicate=0)
860    CallSConscript(env, dirs = ['doc'], variant_dir='build/$PLATFORM/doc', duplicate=0)
861    CallSConscript(env, dirs = ['pyvisi/py_src'], variant_dir='build/$PLATFORM/pyvisi', duplicate=0)
862    CallSConscript(env, dirs = ['pycad/py_src'], variant_dir='build/$PLATFORM/pycad', duplicate=0)
863    CallSConscript(env, dirs = ['pythonMPI/src'], variant_dir='build/$PLATFORM/pythonMPI', duplicate=0)
864    CallSConscript(env, dirs = ['scripts'], variant_dir='build/$PLATFORM/scripts', duplicate=0)
865    CallSConscript(env, dirs = ['paso/profiling'], variant_dir='build/$PLATFORM/paso/profiling', duplicate=0)
866    
867    
868    ############ Remember what optimizations we used ###############
869    
870    remember_list = []
871    
872    if env['usedebug']:
873      remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.debug"), None, Touch('$TARGET'))
874    
875    if env['usempi']:
876      remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.mpi"), None, Touch('$TARGET'))
877    
878    if env['useopenmp']:
879      remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.openmp"), None, Touch('$TARGET'))
880    
881  # ============= and some helpers =====================================  env.Alias('remember_options', remember_list)
 try:  
    doxygen_path = env['doxygen_path']  
 except KeyError:  
    doxygen_path = None  
 try:  
    epydoc_path = env['epydoc_path']  
 except KeyError:  
    epydoc_path = None  
 try:  
    src_zipfile = env.File(env['src_zipfile'])  
 except KeyError:  
    src_zipfile = None  
 try:  
    test_zipfile = env.File(env['test_zipfile'])  
 except KeyError:  
    test_zipfile = None  
 try:  
    examples_zipfile = env.File(env['examples_zipfile'])  
 except KeyError:  
    examples_zipfile = None  
882    
 try:  
    src_tarfile = env.File(env['src_tarfile'])  
 except KeyError:  
    src_tarfile = None  
 try:  
    test_tarfile = env.File(env['test_tarfile'])  
 except KeyError:  
    test_tarfile = None  
 try:  
    examples_tarfile = env.File(env['examples_tarfile'])  
 except KeyError:  
    examples_tarfile = None  
883    
884  try:  ############### Record python interpreter version ##############
    guide_pdf = env.File(env['guide_pdf'])  
 except KeyError:  
    guide_pdf = None  
885    
886  try:  if not IS_WINDOWS_PLATFORM:
    guide_html_index = env.File('index.htm',env['guide_html'])  
 except KeyError:  
    guide_html_index = None  
887    
888  try:    versionstring="Python "+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])
889     api_epydoc = env.Dir(env['api_epydoc'])  #  if sys.version_info[4] >0 : versionstring+="rc%s"%sys.version_info[4]
 except KeyError:  
    api_epydoc = None  
890    
891  try:  ############## Populate the buildvars file #####################
    api_doxygen = env.Dir(env['api_doxygen'])  
 except KeyError:  
    api_doxygen = None  
892    
893  try:  buildvars=open(os.path.join(env['libinstall'],'buildvars'),'w')
894     svn_pipe = os.popen("svnversion -n .")  buildvars.write('python='+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+'\n')
895     global_revision = svn_pipe.readlines()  
896     svn_pipe.close()  # Find the boost version by extracting it from version.hpp
897     global_revision = re.sub(":.*", "", global_revision[0])  boosthpp=open(os.path.join(env['boost_path'],'boost','version.hpp'))
898     global_revision = re.sub("[^0-9]", "", global_revision)  boostversion='unknown'
899  except:  try:
900     global_revision="-1"      for line in boosthpp:
901     print "Warning: unable to recover global revsion number."          ver=re.match(r'#define BOOST_VERSION (\d+)',line)
902  if global_revision == "": global_revision="0"          if ver:
903  print "Revision number is %s."%global_revision              boostversion=ver.group(1)
904  env.Append(CPPDEFINES = "SVN_VERSION="+global_revision)  except StopIteration:
905        pass
906  # Python install - esys __init__.py  buildvars.write("boost="+boostversion+"\n")
907  init_target = env.Command(pyinstall+'/__init__.py', None, Touch('$TARGET'))  buildvars.write("svn_revision="+str(global_revision)+"\n")
908    out="usedebug="
909  # FIXME: exinstall and friends related to examples are not working.  if env['usedebug']:
910  build_target = env.Alias('build',[libinstall,incinstall,pyinstall,init_target])      out+="y"
911    else:
912  env.Default(build_target)      out+="n"
913    out+="\nusempi="
914  # Zipgets  if env['usempi']:
915  env.Alias('release_src',[ src_zipfile, src_tarfile ])      out+="y"
916  env.Alias('release_tests',[ test_zipfile, test_tarfile])  else:
917  env.Alias('release_examples',[ examples_zipfile, examples_tarfile])      out+="n"
918  env.Alias('examples_zipfile',examples_zipfile)  out+="\nuseopenmp="
919  env.Alias('examples_tarfile',examples_tarfile)  if env['useopenmp']:
920  env.Alias('api_epydoc',api_epydoc)      out+="y"
921  env.Alias('api_doxygen',api_doxygen)  else:
922  env.Alias('guide_html_index',guide_html_index)      out+="n"
923  env.Alias('guide_pdf', guide_pdf)  buildvars.write(out+"\n")
924  env.Alias('docs',[ 'release_examples', 'guide_pdf', api_epydoc, api_doxygen, guide_html_index])  buildvars.write("mpi_flavour="+env['mpi_flavour']+'\n')
925  env.Alias('release', ['release_src', 'release_tests', 'docs'])  out="lapack="
926    if env['uselapack']:
927  env.Alias('build_tests',build_target)    # target to build all C++ tests     out+="y"
928  env.Alias('build_py_tests',build_target) # target to build all python tests  else:
929  env.Alias('build_all_tests', [ 'build_tests', 'build_py_tests' ] ) # target to build all python tests     out+="n"
930  env.Alias('run_tests', 'build_tests')   # target to run all C++ test  out+="\nsilo="
931  env.Alias('py_tests', 'build_py_tests') # taget to run all released python tests  if env['usesilo']:
932  env.Alias('all_tests', ['run_tests', 'py_tests']) # target to run all C++ and released python tests     out+="y"
933    else:
934       out+="n"
935  # Allow sconscripts to see the env  out+="\nusevisit="
936  Export(["IS_WINDOWS_PLATFORM", "env", "incinstall", "libinstall", "pyinstall", "dodebug", "mkl_libs", "scsl_libs", "umf_libs", "blas_libs", "netCDF_libs", "useNetCDF", "mpi_run",  if env['usevisit']:
937      "boost_lib", "python_lib", "doxygen_path", "epydoc_path", "papi_libs",     out+="y"
938          "sys_libs", "test_zipfile", "src_zipfile", "test_tarfile", "src_tarfile", "examples_tarfile", "examples_zipfile", "trilinos_libs", "mpi_libs", "papi_instrument_solver",  else:
939          "guide_pdf", "guide_html_index", "api_epydoc", "api_doxygen", "useMPI" ])     out+="n"
940    buildvars.write(out+"\n")
941  # End initialisation section  buildvars.close()
942  # Begin configuration section  
943  # adds this file and the scons option directore to the source tar  
944  release_srcfiles=[env.File('SConstruct'),env.Dir('lib'),env.Dir('include'),]+[ env.File(x) for x in glob.glob('scons/*.py') ]  ############ Targets to build and install libraries ############
945  release_testfiles=[env.File('README_TESTS'),]  
946  env.Zip(src_zipfile, release_srcfiles)  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))
947  env.Zip(test_zipfile, release_testfiles)  env.Alias('target_init', [target_init])
948  try:  
949     env.Tar(src_tarfile, release_srcfiles)  # The headers have to be installed prior to build in order to satisfy #include <paso/Common.h>
950     env.Tar(test_tarfile, release_testfiles)  env.Alias('build_esysUtils', ['target_install_esysUtils_headers', 'target_esysUtils_a'])
951  except AttributeError:  env.Alias('install_esysUtils', ['build_esysUtils', 'target_install_esysUtils_a'])
952     pass  
953  # Insert new components to be build here  env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])
954  # FIXME: might be nice to replace this verbosity with a list of targets and some  env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])
955  # FIXME: nifty python to create the lengthy but very similar env.Sconscript lines  
956  # Third Party libraries  env.Alias('build_weipa', ['target_install_weipa_headers', 'target_weipa_so', 'target_weipacpp_so'])
957  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  env.Alias('install_weipa', ['build_weipa', 'target_install_weipa_so', 'target_install_weipacpp_so', 'target_install_weipa_py'])
958  # C/C++ Libraries  
959  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  
960  # bruce is removed for now as it doesn't really do anything  env.Alias('build_escriptreader', ['target_install_weipa_headers', 'target_escriptreader_a'])
961  # env.SConscript(dirs = ['bruce/src'], build_dir='build/$PLATFORM/bruce', duplicate=0)  env.Alias('install_escriptreader', ['build_escriptreader', 'target_install_escriptreader_a'])
962  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  
963  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])
964  env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])
965  env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)  
966  env.SConscript(dirs = ['doc'], build_dir='build/$PLATFORM/doc', duplicate=0)  env.Alias('build_finley', ['target_install_finley_headers', 'target_finley_so', 'target_finleycpp_so'])
967  env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  env.Alias('install_finley', ['build_finley', 'target_install_finley_so', 'target_install_finleycpp_so', 'target_install_finley_py'])
968  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  
969  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  # Now gather all the above into a couple easy targets: build_all and install_all
970  #env.SConscript(dirs = ['../test'], build_dir='../test/build', duplicate=0)  build_all_list = []
971    build_all_list += ['build_esysUtils']
972    build_all_list += ['build_paso']
973    build_all_list += ['build_weipa']
974    build_all_list += ['build_escript']
975    build_all_list += ['build_finley']
976    if env['usempi']:       build_all_list += ['target_pythonMPI_exe']
977    #if not IS_WINDOWS_PLATFORM:    build_all_list += ['target_escript_wrapper']
978    build_all_list += ['target_escriptconvert']
979    env.Alias('build_all', build_all_list)
980    
981    install_all_list = []
982    install_all_list += ['target_init']
983    install_all_list += ['install_esysUtils']
984    install_all_list += ['install_paso']
985    install_all_list += ['install_weipa']
986    install_all_list += ['install_escript']
987    install_all_list += ['install_finley']
988    install_all_list += ['target_install_pyvisi_py']
989    install_all_list += ['target_install_modellib_py']
990    install_all_list += ['target_install_pycad_py']
991    if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']
992    #if not IS_WINDOWS_PLATFORM:    install_all_list += ['target_install_escript_wrapper']
993    if env['usesilo']:  install_all_list += ['target_install_escriptconvert']
994    install_all_list += ['remember_options']
995    env.Alias('install_all', install_all_list)
996    
997    # Default target is install
998    env.Default('install_all')
999    
1000    ############ Targets to build and run the test suite ###########
1001    
1002    env.Alias('build_cppunittest', ['target_install_cppunittest_headers', 'target_cppunittest_a'])
1003    env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])
1004    env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])
1005    env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])
1006    env.Alias('build_full',['install_all','build_tests','build_py_tests'])
1007    
1008    
1009    ############ Targets to build the documentation ################
1010    
1011    env.Alias('api_epydoc','install_all')
1012    
1013    env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html','install_pdf', 'cookbook_pdf'])
1014    
1015    build_platform=os.name
1016    
1017    if not IS_WINDOWS_PLATFORM:
1018       try:
1019        utest=open("utest.sh","w")
1020        #Sometimes Mac python says it is posix
1021        if (build_platform=='posix') and platform.system()=="Darwin":
1022            build_platform='darwin'
1023        utest.write(GroupTest.makeHeader(build_platform))
1024        for tests in TestGroups:
1025            utest.write(tests.makeString())
1026        utest.close()
1027        os.chmod("utest.sh",stat.S_IRWXU|stat.S_IRGRP|stat.S_IXGRP|stat.S_IROTH|stat.S_IXOTH)
1028        print "utest.sh written"
1029       except IOError:
1030        print "Error attempting to write unittests file."
1031        sys.exit(1)
1032    
1033       #Make sure that the escript wrapper is in place
1034       if not os.path.isfile(os.path.join(env['bininstall'],'escript')):
1035           print "Copying escript wrapper"
1036           shutil.copy("bin/escript",os.path.join(env['bininstall'],'escript'))
1037    
1038    ############ Targets to build PasoTests suite ################
1039    
1040  syslib_install_target = env.installDirectory(sys_libinstall,libinstall)  env.Alias('build_PasoTests','build/'+build_platform+'/paso/profiling/PasoTests')
 syspy_install_target = env.installDirectory(sys_pyinstall,pyinstall,recursive=True)  
1041    
1042  install_target = env.Alias("install", env.Flatten([syslib_install_target, syspy_install_target]) )  env.Alias('release_prep', ['docs', 'install_all'])
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