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revision 3508 by lgao, Fri May 13 04:15:29 2011 UTC revision 4244 by jfenwick, Mon Feb 25 05:37:50 2013 UTC
# Line 1  Line 1 
1  ########################################################  ##############################################################################
2  #  #
3  # Copyright (c) 2003-2010 by University of Queensland  # Copyright (c) 2003-2013 by University of Queensland
4  # Earth Systems Science Computational Center (ESSCC)  # http://www.uq.edu.au
 # http://www.uq.edu.au/esscc  
5  #  #
6  # Primary Business: Queensland, Australia  # Primary Business: Queensland, Australia
7  # Licensed under the Open Software License version 3.0  # Licensed under the Open Software License version 3.0
8  # http://www.opensource.org/licenses/osl-3.0.php  # http://www.opensource.org/licenses/osl-3.0.php
9  #  #
10  ########################################################  # Development until 2012 by Earth Systems Science Computational Center (ESSCC)
11    # Development since 2012 by School of Earth Sciences
12    #
13    ##############################################################################
14    
15  EnsureSConsVersion(0,98,1)  EnsureSConsVersion(0,98,1)
16  EnsurePythonVersion(2,5)  EnsurePythonVersion(2,5)
# Line 16  EnsurePythonVersion(2,5) Line 18  EnsurePythonVersion(2,5)
18  import sys, os, platform, re  import sys, os, platform, re
19  from distutils import sysconfig  from distutils import sysconfig
20  from site_init import *  from site_init import *
21    from subprocess import PIPE, Popen
22    
23  # Version number to check for in options file. Increment when new features are  # Version number to check for in options file. Increment when new features are
24  # added or existing options changed.  # added or existing options changed.
25  REQUIRED_OPTS_VERSION=200  REQUIRED_OPTS_VERSION=201
26    
27  # MS Windows support, many thanks to PH  # MS Windows support, many thanks to PH
28  IS_WINDOWS = (os.name == 'nt')  IS_WINDOWS = (os.name == 'nt')
# Line 47  if not os.path.isfile(options_file): Line 50  if not os.path.isfile(options_file):
50  ############################### Build options ################################  ############################### Build options ################################
51    
52  default_prefix='/usr'  default_prefix='/usr'
53  mpi_flavours=('none', 'MPT', 'MPICH', 'MPICH2', 'OPENMPI', 'INTELMPI')  mpi_flavours=('no', 'none', 'MPT', 'MPICH', 'MPICH2', 'OPENMPI', 'INTELMPI')
54  lapack_flavours=('none', 'clapack', 'mkl')  lapack_flavours=('none', 'clapack', 'mkl')
55    
56  vars = Variables(options_file, ARGUMENTS)  vars = Variables(options_file, ARGUMENTS)
# Line 73  vars.AddVariables( Line 76  vars.AddVariables(
76  # Mandatory libraries  # Mandatory libraries
77    ('boost_prefix', 'Prefix/Paths of boost installation', default_prefix),    ('boost_prefix', 'Prefix/Paths of boost installation', default_prefix),
78    ('boost_libs', 'Boost libraries to link with', ['boost_python-mt']),    ('boost_libs', 'Boost libraries to link with', ['boost_python-mt']),
79    # Mandatory for tests
80      ('cppunit_prefix', 'Prefix/Paths of CppUnit installation', default_prefix),
81      ('cppunit_libs', 'CppUnit libraries to link with', ['cppunit']),
82  # Optional libraries and options  # Optional libraries and options
83    EnumVariable('mpi', 'Compile parallel version using MPI flavour', 'none', allowed_values=mpi_flavours),    EnumVariable('mpi', 'Compile parallel version using MPI flavour', 'none', allowed_values=mpi_flavours),
84    ('mpi_prefix', 'Prefix/Paths of MPI installation', default_prefix),    ('mpi_prefix', 'Prefix/Paths of MPI installation', default_prefix),
# Line 105  vars.AddVariables( Line 111  vars.AddVariables(
111    BoolVariable('visit', 'Enable the VisIt simulation interface', False),    BoolVariable('visit', 'Enable the VisIt simulation interface', False),
112    ('visit_prefix', 'Prefix/Paths to VisIt installation', default_prefix),    ('visit_prefix', 'Prefix/Paths to VisIt installation', default_prefix),
113    ('visit_libs', 'VisIt libraries to link with', ['simV2']),    ('visit_libs', 'VisIt libraries to link with', ['simV2']),
   BoolVariable('pyvisi', 'Enable pyvisi (deprecated, requires VTK module)', False),  
114    BoolVariable('vsl_random', 'Use VSL from intel for random data', False),    BoolVariable('vsl_random', 'Use VSL from intel for random data', False),
115  # Advanced settings  # Advanced settings
116    #dudley_assemble_flags = -funroll-loops      to actually do something    #dudley_assemble_flags = -funroll-loops      to actually do something
# Line 119  vars.AddVariables( Line 124  vars.AddVariables(
124    EnumVariable('forcecollres', 'For testing use only - set the default value for force resolving collective ops', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),    EnumVariable('forcecollres', 'For testing use only - set the default value for force resolving collective ops', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
125    # finer control over library building, intel aggressive global optimisation    # finer control over library building, intel aggressive global optimisation
126    # works with dynamic libraries on windows.    # works with dynamic libraries on windows.
127    ('share_esysutils', 'Build a dynamic esysUtils library', False),    ('build_shared', 'Build dynamic libraries only', False),
   ('share_paso', 'Build a dynamic paso library', False),  
128    ('sys_libs', 'Extra libraries to link with', []),    ('sys_libs', 'Extra libraries to link with', []),
129    ('escript_opts_version', 'Version of options file (do not specify on command line)'),    ('escript_opts_version', 'Version of options file (do not specify on command line)'),
130      ('SVN_VERSION', 'Do not use from options file', -2),
131      ('pythoncmd', 'which python to compile with','python'),
132      ('usepython3', 'Is this a python3 build? (experimental)', False),
133      ('pythonlibname', 'Name of the python library to link. (This is found automatically for python2.X.)', ''),
134      ('pythonlibpath', 'Path to the python library. (You should not need to set this unless your python has moved)',''),
135      ('pythonincpath','Path to python include files. (You should not need to set this unless your python has moved',''),
136      BoolVariable('BADPYTHONMACROS','Extra \#include to get around a python bug.', True),
137  )  )
138    
139  ##################### Create environment and help text #######################  ##################### Create environment and help text #######################
# Line 134  vars.AddVariables( Line 145  vars.AddVariables(
145  # in default locations.  # in default locations.
146  env = Environment(tools = ['default'], options = vars,  env = Environment(tools = ['default'], options = vars,
147                    ENV = {'PATH': os.environ['PATH']})                    ENV = {'PATH': os.environ['PATH']})
148                      
149    
150    #set the vars for clang
151    def mkclang(env):
152      env['CC']='clang'
153      env['CXX']='clang++'
154                      
155                      
156  if env['tools_names'] != 'default':  if env['tools_names'] != 'default':
157        zz=env['tools_names']
158        if 'clang' in zz:
159            zz.remove('clang')
160            zz.insert(0, mkclang)
161      env = Environment(tools = ['default'] + env['tools_names'], options = vars,      env = Environment(tools = ['default'] + env['tools_names'], options = vars,
162                        ENV = {'PATH' : os.environ['PATH']})                        ENV = {'PATH' : os.environ['PATH']})
163    
# Line 162  if len(vars.UnknownVariables())>0: Line 185  if len(vars.UnknownVariables())>0:
185    
186  #################### Make sure install directories exist #####################  #################### Make sure install directories exist #####################
187    
188  env['BUILD_DIR']=env['build_dir']  env['BUILD_DIR']=Dir(env['build_dir']).abspath
189  prefix=Dir(env['prefix']).abspath  prefix=Dir(env['prefix']).abspath
190  env['incinstall'] = os.path.join(prefix, 'include')  env['incinstall'] = os.path.join(prefix, 'include')
191  env['bininstall'] = os.path.join(prefix, 'bin')  env['bininstall'] = os.path.join(prefix, 'bin')
# Line 202  cc_name=os.path.basename(env['CC']) Line 225  cc_name=os.path.basename(env['CC'])
225    
226  if cc_name == 'icc':  if cc_name == 'icc':
227      # Intel compiler      # Intel compiler
228      cc_flags    = "-std=c99 -fPIC -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"      # #1875: offsetof applied to non-POD types is nonstandard (in boost)
229      cc_optim    = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias -ip"      cc_flags    = "-std=c99 -fPIC -w2 -wd1875 -Wno-unknown-pragmas -DBLOCKTIMER -DCORE_ID1"
230        cc_optim    = "-O3 -ftz -fno-alias -ipo -xHost"
231      cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"      cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
232      omp_flags   = "-openmp -openmp_report0"      omp_flags   = "-openmp"
233      omp_ldflags = "-openmp -openmp_report0 -lguide -lpthread"      omp_ldflags = "-openmp -openmp_report=1"
234      fatalwarning = "-Werror"      fatalwarning = "-Werror"
235  elif cc_name[:3] == 'gcc':  elif cc_name[:3] == 'gcc':
236      # GNU C on any system      # GNU C on any system
237      cc_flags     = "-pedantic -Wall -fPIC -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"      # note that -ffast-math is not used because it breaks isnan(),
238        # see mantis #691
239        cc_flags     = "-pedantic -Wall -fPIC -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"
240      cc_optim     = "-O3"      cc_optim     = "-O3"
241      cc_debug     = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"      cc_debug     = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
242      omp_flags    = "-fopenmp"      omp_flags    = "-fopenmp"
# Line 241  if env['cc_extra']  != '': env.Append(CF Line 267  if env['cc_extra']  != '': env.Append(CF
267  if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])  if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
268  if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])  if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])
269    
270    if env['BADPYTHONMACROS']: env.Append(CXXFLAGS = ' -DBADPYTHONMACROS')
271    
272    if env['usepython3']:
273        env.Append(CPPDEFINES=['ESPYTHON3'])
274    
275  # set up the autolazy values  # set up the autolazy values
276  if env['forcelazy'] == 'on':  if env['forcelazy'] == 'on':
277      env.Append(CPPDEFINES=['FAUTOLAZYON'])      env.Append(CPPDEFINES=['FAUTOLAZYON'])
# Line 281  env.Append(CCFLAGS = env['cc_flags']) Line 312  env.Append(CCFLAGS = env['cc_flags'])
312  # add system libraries  # add system libraries
313  env.AppendUnique(LIBS = env['sys_libs'])  env.AppendUnique(LIBS = env['sys_libs'])
314    
315  # Get the global Subversion revision number for the getVersion() method  
316  try:  global_revision=ARGUMENTS.get('SVN_VERSION', None)
317    if global_revision:
318        global_revision = re.sub(':.*', '', global_revision)
319        global_revision = re.sub('[^0-9]', '', global_revision)
320        if global_revision == '': global_revision='-2'
321    else:
322      # Get the global Subversion revision number for the getVersion() method
323      try:
324      global_revision = os.popen('svnversion -n .').read()      global_revision = os.popen('svnversion -n .').read()
325      global_revision = re.sub(':.*', '', global_revision)      global_revision = re.sub(':.*', '', global_revision)
326      global_revision = re.sub('[^0-9]', '', global_revision)      global_revision = re.sub('[^0-9]', '', global_revision)
327      if global_revision == '': global_revision='-2'      if global_revision == '': global_revision='-2'
328  except:    except:
329      global_revision = '-1'      global_revision = '-1'
330  env['svn_revision']=global_revision  env['svn_revision']=global_revision
331  env.Append(CPPDEFINES=['SVN_VERSION='+global_revision])  env.Append(CPPDEFINES=['SVN_VERSION='+global_revision])
332    
333  if IS_WINDOWS:  if IS_WINDOWS:
334      if not env['share_esysutils']:      if not env['build_shared']:
335          env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])          env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
     if not env['share_paso']:  
336          env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])          env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
337    
338  ###################### Copy required environment vars ########################  ###################### Copy required environment vars ########################
# Line 316  for key in 'OMP_NUM_THREADS', 'ESCRIPT_N Line 353  for key in 'OMP_NUM_THREADS', 'ESCRIPT_N
353          env['ENV'][key] = 1          env['ENV'][key] = 1
354    
355  env_export=env['env_export']  env_export=env['env_export']
356  env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME','TMPDIR','TEMP','TMP'])  env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME','KMP_MONITOR_STACKSIZE','TMPDIR','TEMP','TMP'])
357    
358  for key in set(env_export):  for key in set(env_export):
359      try:      try:
# Line 343  except KeyError: Line 380  except KeyError:
380    
381  ######################## Add some custom builders ############################  ######################## Add some custom builders ############################
382    
383  py_builder = Builder(action = build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  if env['pythoncmd']=='python':
384        py_builder = Builder(action = build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
385    else:
386        py_builder = Builder(action = env['pythoncmd']+" scripts/py_comp.py $SOURCE $TARGET", suffix = '.pyc', src_suffix = '.py', single_source=True)
387  env.Append(BUILDERS = {'PyCompile' : py_builder});  env.Append(BUILDERS = {'PyCompile' : py_builder});
388    
389  runUnitTest_builder = Builder(action = runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  runUnitTest_builder = Builder(action = runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
# Line 382  if conf.CheckFunc('gethostname'): Line 422  if conf.CheckFunc('gethostname'):
422    
423  ######## Python headers & library (required)  ######## Python headers & library (required)
424    
425  python_inc_path=sysconfig.get_python_inc()  #First we check to see if the config file has specified
426  if IS_WINDOWS:  ##Where to find the filae. Ideally, this should be automatic
427      python_lib_path=os.path.join(sysconfig.get_config_var('prefix'), 'libs')  #But we need to deal with the case where python is not in its INSTALL
428  elif env['PLATFORM']=='darwin':  #Directory
429      python_lib_path=sysconfig.get_config_var('LIBPL')  # Use the python scons is running
430  else:  if env['pythoncmd']=='python':
431      python_lib_path=sysconfig.get_config_var('LIBDIR')      python_inc_path=sysconfig.get_python_inc()
432  #python_libs=[sysconfig.get_config_var('LDLIBRARY')] # only on linux      if IS_WINDOWS:
433  if IS_WINDOWS:          python_lib_path=os.path.join(sysconfig.get_config_var('prefix'), 'libs')
434      python_libs=['python%s%s'%(sys.version_info[0], sys.version_info[1])]      elif env['PLATFORM']=='darwin':
435            python_lib_path=sysconfig.get_config_var('LIBPL')
436        else:
437            python_lib_path=sysconfig.get_config_var('LIBDIR')
438    
439        #python_libs=[sysconfig.get_config_var('LDLIBRARY')] # only on linux
440        if IS_WINDOWS:
441            python_libs=['python%s%s'%(sys.version_info[0], sys.version_info[1])]
442        else:
443            python_libs=['python'+sysconfig.get_python_version()]
444    
445    #if we want to use a python other than the one scons is running
446  else:  else:
447      python_libs=['python'+sysconfig.get_python_version()]      initstring='from __future__ import print_function;from distutils import sysconfig;'
448        if env['pythonlibname']!='':
449            python_libs=env['pythonlibname']
450        else:   # work it out by calling python    
451            if IS_WINDOWS:
452                cmd='print("python%s%s"%(sys.version_info[0], sys.version_info[1]))'
453            else:
454                cmd='print("python"+sysconfig.get_python_version())'
455            p=Popen([env['pythoncmd'], '-c', initstring+cmd], stdout=PIPE)
456            python_libs=p.stdout.readline()
457            if env['usepython3']:       # This is to convert unicode str into py2 string
458                python_libs=python_libs.encode() # If scons runs on py3 then this must be rethought
459            p.wait()
460            python_libs=python_libs.strip()
461    
462      
463        # Now we know whether we are using python3 or not
464        p=Popen([env['pythoncmd'], '-c',  initstring+'print(sysconfig.get_python_inc())'], stdout=PIPE)
465        python_inc_path=p.stdout.readline()
466        if env['usepython3']:
467             python_inc_path=python_inc_path.encode()
468        p.wait()  
469        python_inc_path=python_inc_path.strip()
470        if IS_WINDOWS:
471            cmd="os.path.join(sysconfig.get_config_var('prefix'), 'libs')"
472        elif env['PLATFORM']=='darwin':
473            cmd="sysconfig.get_config_var(\"LIBPL\")"
474        else:
475            cmd="sysconfig.get_config_var(\"LIBDIR\")"
476    
477        p=Popen([env['pythoncmd'], '-c', initstring+'print('+cmd+')'], stdout=PIPE)
478        python_lib_path=p.stdout.readline()
479        if env['usepython3']:
480            python_lib_path=python_lib_path.decode()
481        p.wait()
482        python_lib_path=python_lib_path.strip()
483    
484    #Check for an override from the config file.
485    #Ideally, this should be automatic
486    #But we need to deal with the case where python is not in its INSTALL
487    #Directory
488    if env['pythonlibpath']!='':
489        python_lib_path=env['pythonlibpath']
490    
491    if env['pythonincpath']!='':
492        python_inc_path=env['pythonincpath']
493    
494    
495  if sysheaderopt == '':  if sysheaderopt == '':
496      conf.env.AppendUnique(CPPPATH = [python_inc_path])      conf.env.AppendUnique(CPPPATH = [python_inc_path])
# Line 412  if not conf.CheckFunc('Py_Exit'): Line 509  if not conf.CheckFunc('Py_Exit'):
509      print("Cannot find python library method Py_Main (tried %s in directory %s)" % (python_libs, python_lib_path))      print("Cannot find python library method Py_Main (tried %s in directory %s)" % (python_libs, python_lib_path))
510      Exit(1)      Exit(1)
511    
512    ## reuse conf to check for numpy header (optional)
513    if env['usepython3']:
514        # FIXME: This is until we can work out how to make the checks in python 3
515        conf.env['numpy_h']=False
516    else:
517        if conf.CheckCXXHeader(['Python.h','numpy/ndarrayobject.h']):
518            conf.env.Append(CPPDEFINES = ['HAVE_NUMPY_H'])
519            conf.env['numpy_h']=True
520        else:
521            conf.env['numpy_h']=False
522    
523  # Commit changes to environment  # Commit changes to environment
524  env = conf.Finish()  env = conf.Finish()
525    
# Line 434  env.PrependENVPath(LD_LIBRARY_PATH_KEY, Line 542  env.PrependENVPath(LD_LIBRARY_PATH_KEY,
542    
543  ######## numpy (required)  ######## numpy (required)
544    
545  try:  if not detectModule(env, 'numpy'):
546      from numpy import identity      print("Cannot import numpy. If it is installed try setting your PYTHONPATH and probably %s"%LD_LIBRARY_PATH_KEY)
 except ImportError:  
     print("Cannot import numpy, you need to set your PYTHONPATH and probably %s"%LD_LIBRARY_PATH_KEY)  
547      Exit(1)      Exit(1)
548    
549  ######## VTK (optional)  ######## CppUnit (required for tests)
550    
551  if env['pyvisi']:  try:
552      try:      cppunit_inc_path,cppunit_lib_path=findLibWithHeader(env, env['cppunit_libs'], 'cppunit/TestFixture.h', env['cppunit_prefix'], lang='c++')
553          import vtk      env.AppendUnique(CPPPATH = [cppunit_inc_path])
554          env['pyvisi'] = True      env.AppendUnique(LIBPATH = [cppunit_lib_path])
555      except ImportError:      env.PrependENVPath(LD_LIBRARY_PATH_KEY, cppunit_lib_path)
556          print("Cannot import vtk, disabling pyvisi.")      env['cppunit']=True
557          env['pyvisi'] = False  except:
558        env['cppunit']=False
559    
560    ######## sympy (optional)
561    
562    if detectModule(env, 'sympy'):
563        env['sympy'] = True
564    else:
565        print("Cannot import sympy. Symbolic toolbox and nonlinear PDEs will not be available.")
566        env['sympy'] = False
567    
568    ######## pyproj (optional)
569    
570    if detectModule(env, 'pyproj'):
571        env['pyproj'] = True
572    else:
573        print("Cannot import pyproj. Inversions may not work.")
574        env['pyproj'] = False
575    
576  ######## netCDF (optional)  ######## netCDF (optional)
577    
# Line 545  if env['visit']: Line 668  if env['visit']:
668    
669  ######## MPI (optional)  ######## MPI (optional)
670    
671    if env['mpi']=='no':
672        env['mpi']='none'
673    
674  env['usempi'] = env['mpi']!='none'  env['usempi'] = env['mpi']!='none'
675  mpi_inc_path=''  mpi_inc_path=''
676  mpi_lib_path=''  mpi_lib_path=''
# Line 563  if env['usempi']: Line 689  if env['usempi']:
689    
690  ######## BOOMERAMG (optional)  ######## BOOMERAMG (optional)
691    
692  if env['boomeramg'] and env['mpi'] == 'none':  if env['mpi'] == 'none': env['boomeramg'] = False
     print("boomeramg requires mpi!")  
     Exit(1)  
693    
694  boomeramg_inc_path=''  boomeramg_inc_path=''
695  boomeramg_lib_path=''  boomeramg_lib_path=''
# Line 573  if env['boomeramg']: Line 697  if env['boomeramg']:
697      boomeramg_inc_path,boomeramg_lib_path=findLibWithHeader(env, env['boomeramg_libs'], 'HYPRE.h', env['boomeramg_prefix'], lang='c')      boomeramg_inc_path,boomeramg_lib_path=findLibWithHeader(env, env['boomeramg_libs'], 'HYPRE.h', env['boomeramg_prefix'], lang='c')
698      env.AppendUnique(CPPPATH = [boomeramg_inc_path])      env.AppendUnique(CPPPATH = [boomeramg_inc_path])
699      env.AppendUnique(LIBPATH = [boomeramg_lib_path])      env.AppendUnique(LIBPATH = [boomeramg_lib_path])
     # Note that we do not add the libs since they are only needed for the  
     # weipa library and tools.  
700      env.AppendUnique(LIBS = env['boomeramg_libs'])      env.AppendUnique(LIBS = env['boomeramg_libs'])
701      env.PrependENVPath(LD_LIBRARY_PATH_KEY, boomeramg_lib_path)      env.PrependENVPath(LD_LIBRARY_PATH_KEY, boomeramg_lib_path)
702      env.Append(CPPDEFINES = ['BOOMERAMG'])      env.Append(CPPDEFINES = ['BOOMERAMG'])
# Line 596  if env['parmetis']: Line 718  if env['parmetis']:
718  ######## gmsh (optional, for tests)  ######## gmsh (optional, for tests)
719    
720  try:  try:
721      import subprocess      p=Popen(['gmsh', '-info'], stderr=PIPE)
722      p=subprocess.Popen(['gmsh', '-version'], stderr=subprocess.PIPE)      _,e=p.communicate()
723      p.poll()      if e.split().count("MPI"):
724      env['gmsh']=True          env['gmsh']='m'
725        else:
726            env['gmsh']='s'
727  except OSError:  except OSError:
728      env['gmsh']=False      env['gmsh']=False
729    
730    ######## PDFLaTeX (for documentation)
731    if 'PDF' in dir(env) and '.tex' in env.PDF.builder.src_suffixes(env):
732        env['pdflatex']=True
733    else:
734        env['pdflatex']=False
735    
736  ######################## Summarize our environment ###########################  ######################## Summarize our environment ###########################
737    
738  # keep some of our install paths first in the list for the unit tests  # keep some of our install paths first in the list for the unit tests
# Line 641  else: Line 771  else:
771      print("          LAPACK:  DISABLED")      print("          LAPACK:  DISABLED")
772  d_list=[]  d_list=[]
773  e_list=[]  e_list=[]
774  for i in 'debug','openmp','netcdf','parmetis','papi','mkl','umfpack','boomeramg','silo','visit':  for i in 'debug','openmp','boomeramg','mkl','netcdf','papi','parmetis','pyproj','silo','sympy','umfpack','visit','vsl_random':
775      if env[i]: e_list.append(i)      if env[i]: e_list.append(i)
776      else: d_list.append(i)      else: d_list.append(i)
777  for i in e_list:  for i in e_list:
778      print("%16s:  YES"%i)      print("%16s:  YES"%i)
779  for i in d_list:  for i in d_list:
780      print("%16s:  DISABLED"%i)      print("%16s:  DISABLED"%i)
781  if env['gmsh']:  if env['cppunit']:
782        print("         CppUnit:  FOUND")
783    else:
784        print("         CppUnit:  NOT FOUND")
785    if env['gmsh']=='m':
786        print("            gmsh:  FOUND, MPI-ENABLED")
787    elif env['gmsh']=='s':
788      print("            gmsh:  FOUND")      print("            gmsh:  FOUND")
789  else:  else:
790      print("            gmsh:  NOT FOUND")      print("            gmsh:  NOT FOUND")
791  print("      vsl_random:  %s"%env['vsl_random'])  if env['numpy_h']:
792        print("   numpy headers:  FOUND")
793    else:
794        print("   numpy headers:  NOT FOUND")
795    print("   vsl_random:  %s"%env['vsl_random'])
796            
797  if ((fatalwarning != '') and (env['werror'])):  if ((fatalwarning != '') and (env['werror'])):
798      print("  Treating warnings as errors")      print("  Treating warnings as errors")
# Line 682  Export( Line 822  Export(
822    ]    ]
823  )  )
824    
 env.SConscript(dirs = ['tools/CppUnitTest/src'], variant_dir='$BUILD_DIR/$PLATFORM/tools/CppUnitTest', duplicate=0)  
825  env.SConscript(dirs = ['tools/escriptconvert'], variant_dir='$BUILD_DIR/$PLATFORM/tools/escriptconvert', duplicate=0)  env.SConscript(dirs = ['tools/escriptconvert'], variant_dir='$BUILD_DIR/$PLATFORM/tools/escriptconvert', duplicate=0)
826  env.SConscript(dirs = ['paso/src'], variant_dir='$BUILD_DIR/$PLATFORM/paso', duplicate=0)  env.SConscript(dirs = ['paso/src'], variant_dir='$BUILD_DIR/$PLATFORM/paso', duplicate=0)
827  env.SConscript(dirs = ['weipa/src'], variant_dir='$BUILD_DIR/$PLATFORM/weipa', duplicate=0)  env.SConscript(dirs = ['weipa/src'], variant_dir='$BUILD_DIR/$PLATFORM/weipa', duplicate=0)
828  env.SConscript(dirs = ['escript/src'], variant_dir='$BUILD_DIR/$PLATFORM/escript', duplicate=0)  env.SConscript(dirs = ['escript/src'], variant_dir='$BUILD_DIR/$PLATFORM/escript', duplicate=0)
829  env.SConscript(dirs = ['esysUtils/src'], variant_dir='$BUILD_DIR/$PLATFORM/esysUtils', duplicate=0)  env.SConscript(dirs = ['esysUtils/src'], variant_dir='$BUILD_DIR/$PLATFORM/esysUtils', duplicate=0)
830    env.SConscript(dirs = ['pasowrap/src'], variant_dir='$BUILD_DIR/$PLATFORM/pasowrap', duplicate=0)
831  env.SConscript(dirs = ['dudley/src'], variant_dir='$BUILD_DIR/$PLATFORM/dudley', duplicate=0)  env.SConscript(dirs = ['dudley/src'], variant_dir='$BUILD_DIR/$PLATFORM/dudley', duplicate=0)
832  env.SConscript(dirs = ['finley/src'], variant_dir='$BUILD_DIR/$PLATFORM/finley', duplicate=0)  env.SConscript(dirs = ['finley/src'], variant_dir='$BUILD_DIR/$PLATFORM/finley', duplicate=0)
833    env.SConscript(dirs = ['ripley/src'], variant_dir='$BUILD_DIR/$PLATFORM/ripley', duplicate=0)
834    env.SConscript(dirs = ['downunder/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/downunder', duplicate=0)
835  env.SConscript(dirs = ['modellib/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/modellib', duplicate=0)  env.SConscript(dirs = ['modellib/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/modellib', duplicate=0)
 env.SConscript(dirs = ['doc'], variant_dir='$BUILD_DIR/$PLATFORM/doc', duplicate=0)  
 env.SConscript(dirs = ['pyvisi/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pyvisi', duplicate=0)  
836  env.SConscript(dirs = ['pycad/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pycad', duplicate=0)  env.SConscript(dirs = ['pycad/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pycad', duplicate=0)
837  env.SConscript(dirs = ['pythonMPI/src'], variant_dir='$BUILD_DIR/$PLATFORM/pythonMPI', duplicate=0)  env.SConscript(dirs = ['pythonMPI/src'], variant_dir='$BUILD_DIR/$PLATFORM/pythonMPI', duplicate=0)
838    env.SConscript(dirs = ['doc'], variant_dir='$BUILD_DIR/$PLATFORM/doc', duplicate=0)
839  env.SConscript(dirs = ['paso/profiling'], variant_dir='$BUILD_DIR/$PLATFORM/paso/profiling', duplicate=0)  env.SConscript(dirs = ['paso/profiling'], variant_dir='$BUILD_DIR/$PLATFORM/paso/profiling', duplicate=0)
840    
841    
842  ######################## Populate the buildvars file #########################  ######################## Populate the buildvars file #########################
843    
844  # remove obsolete file  # remove obsolete file
# Line 716  except StopIteration: Line 858  except StopIteration:
858      pass      pass
859  boosthpp.close()  boosthpp.close()
860    
861    
862  buildvars=open(os.path.join(env['libinstall'], 'buildvars'), 'w')  buildvars=open(os.path.join(env['libinstall'], 'buildvars'), 'w')
863  buildvars.write("svn_revision="+str(global_revision)+"\n")  buildvars.write("svn_revision="+str(global_revision)+"\n")
864  buildvars.write("prefix="+prefix+"\n")  buildvars.write("prefix="+prefix+"\n")
865  buildvars.write("cc="+env['CC']+"\n")  buildvars.write("cc="+env['CC']+"\n")
866  buildvars.write("cxx="+env['CXX']+"\n")  buildvars.write("cxx="+env['CXX']+"\n")
867  buildvars.write("python="+sys.executable+"\n")  if env['pythoncmd']=='python':
868  buildvars.write("python_version="+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+"\n")      buildvars.write("python="+sys.executable+"\n")
869        buildvars.write("python_version="+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+"\n")
870    else:
871        buildvars.write("python="+env['pythoncmd']+"\n")
872        p=Popen([env['pythoncmd'], '-c', 'from __future__ import print_function;import sys;print(str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2]))'], stdout=PIPE)
873        verstring=p.stdout.readline().strip()
874        p.wait()
875        buildvars.write("python_version="+verstring+"\n")
876  buildvars.write("boost_inc_path="+boost_inc_path+"\n")  buildvars.write("boost_inc_path="+boost_inc_path+"\n")
877  buildvars.write("boost_lib_path="+boost_lib_path+"\n")  buildvars.write("boost_lib_path="+boost_lib_path+"\n")
878  buildvars.write("boost_version="+boostversion+"\n")  buildvars.write("boost_version="+boostversion+"\n")
# Line 732  buildvars.write("mpi=%s\n"%env['mpi']) Line 882  buildvars.write("mpi=%s\n"%env['mpi'])
882  buildvars.write("mpi_inc_path=%s\n"%mpi_inc_path)  buildvars.write("mpi_inc_path=%s\n"%mpi_inc_path)
883  buildvars.write("mpi_lib_path=%s\n"%mpi_lib_path)  buildvars.write("mpi_lib_path=%s\n"%mpi_lib_path)
884  buildvars.write("lapack=%s\n"%env['lapack'])  buildvars.write("lapack=%s\n"%env['lapack'])
885  buildvars.write("pyvisi=%d\n"%env['pyvisi'])  buildvars.write("vsl_random=%d\n"%int(env['vsl_random']))
 buildvars.write("vsl_random=%d"%int(env['vsl_random']))  
886  for i in 'netcdf','parmetis','papi','mkl','umfpack','boomeramg','silo','visit':  for i in 'netcdf','parmetis','papi','mkl','umfpack','boomeramg','silo','visit':
887      buildvars.write("%s=%d\n"%(i, int(env[i])))      buildvars.write("%s=%d\n"%(i, int(env[i])))
888      if env[i]:      if env[i]:
# Line 743  buildvars.close() Line 892  buildvars.close()
892    
893  ################### Targets to build and install libraries ###################  ################### Targets to build and install libraries ###################
894    
895  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  target_init = env.Command(os.path.join(env['pyinstall'],'__init__.py'), None, Touch('$TARGET'))
896  env.Alias('target_init', [target_init])  env.Alias('target_init', [target_init])
897    # delete buildvars upon cleanup
898    env.Clean('target_init', os.path.join(env['libinstall'], 'buildvars'))
899    
900  # The headers have to be installed prior to build in order to satisfy  # The headers have to be installed prior to build in order to satisfy
901  # #include <paso/Common.h>  # #include <paso/Common.h>
# Line 757  env.Alias('install_paso', ['build_paso', Line 908  env.Alias('install_paso', ['build_paso',
908  env.Alias('build_escript', ['install_escript_headers', 'build_escript_lib', 'build_escriptcpp_lib'])  env.Alias('build_escript', ['install_escript_headers', 'build_escript_lib', 'build_escriptcpp_lib'])
909  env.Alias('install_escript', ['build_escript', 'install_escript_lib', 'install_escriptcpp_lib', 'install_escript_py'])  env.Alias('install_escript', ['build_escript', 'install_escript_lib', 'install_escriptcpp_lib', 'install_escript_py'])
910    
911    env.Alias('build_pasowrap', ['install_pasowrap_headers', 'build_pasowrap_lib', 'build_pasowrapcpp_lib'])
912    env.Alias('install_pasowrap', ['build_pasowrap', 'install_pasowrap_lib', 'install_pasowrapcpp_lib', 'install_pasowrap_py'])
913    
914  env.Alias('build_dudley', ['install_dudley_headers', 'build_dudley_lib', 'build_dudleycpp_lib'])  env.Alias('build_dudley', ['install_dudley_headers', 'build_dudley_lib', 'build_dudleycpp_lib'])
915  env.Alias('install_dudley', ['build_dudley', 'install_dudley_lib', 'install_dudleycpp_lib', 'install_dudley_py'])  env.Alias('install_dudley', ['build_dudley', 'install_dudley_lib', 'install_dudleycpp_lib', 'install_dudley_py'])
916    
917  env.Alias('build_finley', ['install_finley_headers', 'build_finley_lib', 'build_finleycpp_lib'])  env.Alias('build_finley', ['install_finley_headers', 'build_finley_lib', 'build_finleycpp_lib'])
918  env.Alias('install_finley', ['build_finley', 'install_finley_lib', 'install_finleycpp_lib', 'install_finley_py'])  env.Alias('install_finley', ['build_finley', 'install_finley_lib', 'install_finleycpp_lib', 'install_finley_py'])
919    
920    env.Alias('build_ripley', ['install_ripley_headers', 'build_ripley_lib', 'build_ripleycpp_lib'])
921    env.Alias('install_ripley', ['build_ripley', 'install_ripley_lib', 'install_ripleycpp_lib', 'install_ripley_py'])
922    
923  env.Alias('build_weipa', ['install_weipa_headers', 'build_weipa_lib', 'build_weipacpp_lib'])  env.Alias('build_weipa', ['install_weipa_headers', 'build_weipa_lib', 'build_weipacpp_lib'])
924  env.Alias('install_weipa', ['build_weipa', 'install_weipa_lib', 'install_weipacpp_lib', 'install_weipa_py'])  env.Alias('install_weipa', ['build_weipa', 'install_weipa_lib', 'install_weipacpp_lib', 'install_weipa_py'])
925    
# Line 774  build_all_list = [] Line 931  build_all_list = []
931  build_all_list += ['build_esysUtils']  build_all_list += ['build_esysUtils']
932  build_all_list += ['build_paso']  build_all_list += ['build_paso']
933  build_all_list += ['build_escript']  build_all_list += ['build_escript']
934    build_all_list += ['build_pasowrap']
935  build_all_list += ['build_dudley']  build_all_list += ['build_dudley']
936  build_all_list += ['build_finley']  build_all_list += ['build_finley']
937    build_all_list += ['build_ripley']
938  build_all_list += ['build_weipa']  build_all_list += ['build_weipa']
939  if not IS_WINDOWS: build_all_list += ['build_escriptreader']  if not IS_WINDOWS: build_all_list += ['build_escriptreader']
940  if env['usempi']:   build_all_list += ['build_pythonMPI']  if env['usempi']:   build_all_list += ['build_pythonMPI']
# Line 787  install_all_list += ['target_init'] Line 946  install_all_list += ['target_init']
946  install_all_list += ['install_esysUtils']  install_all_list += ['install_esysUtils']
947  install_all_list += ['install_paso']  install_all_list += ['install_paso']
948  install_all_list += ['install_escript']  install_all_list += ['install_escript']
949    install_all_list += ['install_pasowrap']
950  install_all_list += ['install_dudley']  install_all_list += ['install_dudley']
951  install_all_list += ['install_finley']  install_all_list += ['install_finley']
952    install_all_list += ['install_ripley']
953  install_all_list += ['install_weipa']  install_all_list += ['install_weipa']
954  if not IS_WINDOWS: install_all_list += ['install_escriptreader']  if not IS_WINDOWS: install_all_list += ['install_escriptreader']
955  install_all_list += ['install_pyvisi_py']  install_all_list += ['install_downunder_py']
956  install_all_list += ['install_modellib_py']  install_all_list += ['install_modellib_py']
957  install_all_list += ['install_pycad_py']  install_all_list += ['install_pycad_py']
958  if env['usempi']:   install_all_list += ['install_pythonMPI']  if env['usempi']:   install_all_list += ['install_pythonMPI']
# Line 803  env.Default('install_all') Line 964  env.Default('install_all')
964    
965  ################## Targets to build and run the test suite ###################  ################## Targets to build and run the test suite ###################
966    
967  env.Alias('build_cppunittest', ['install_cppunittest_headers', 'build_cppunittest_lib'])  if not env['cppunit']:
968  env.Alias('install_cppunittest', ['build_cppunittest', 'install_cppunittest_lib'])      test_msg = env.Command('.dummy.', None, '@echo "Cannot run C/C++ unit tests, CppUnit not found!";exit 1')
969  env.Alias('run_tests', ['install_all', 'install_cppunittest_lib'])      env.Alias('run_tests', test_msg)
970  env.Alias('all_tests', ['install_all', 'install_cppunittest_lib', 'run_tests', 'py_tests'])  env.Alias('run_tests', ['install_all'])
971    env.Alias('all_tests', ['install_all', 'run_tests', 'py_tests'])
972  env.Alias('build_full',['install_all','build_tests','build_py_tests'])  env.Alias('build_full',['install_all','build_tests','build_py_tests'])
973  env.Alias('build_PasoTests','$BUILD_DIR/$PLATFORM/paso/profiling/PasoTests')  env.Alias('build_PasoTests','$BUILD_DIR/$PLATFORM/paso/profiling/PasoTests')
974    
975  ##################### Targets to build the documentation #####################  ##################### Targets to build the documentation #####################
976    
977  env.Alias('api_epydoc','install_all')  env.Alias('pdfdocs',['user_pdf', 'install_pdf', 'cookbook_pdf', 'inversion_pdf'])
978  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'user_pdf', 'install_pdf', 'cookbook_pdf'])  env.Alias('basedocs', ['pdfdocs','examples_tarfile', 'examples_zipfile', 'api_doxygen'])
979    env.Alias('docs', ['basedocs', 'sphinxdoc'])
980  env.Alias('release_prep', ['docs', 'install_all'])  env.Alias('release_prep', ['docs', 'install_all'])
981    env.Alias('release_prep_old', ['basedocs', 'api_epydoc', 'install_all'])
982    
983    
984    # The test scripts are always generated, this target allows us to
985    # generate the testscripts without doing a full build
986    env.Alias('testscripts',[])
987    
988  if not IS_WINDOWS:  if not IS_WINDOWS:
989      try:      try:
990          utest=open('utest.sh','w')          utest=open('utest.sh','w')
991          utest.write(GroupTest.makeHeader(env['PLATFORM']))          utest.write(GroupTest.makeHeader(env['PLATFORM'], prefix, False))
992          for tests in TestGroups:          for tests in TestGroups:
993              utest.write(tests.makeString())              utest.write(tests.makeString())
994          utest.close()          utest.close()
995          Execute(Chmod('utest.sh', 0755))          Execute(Chmod('utest.sh', 0o755))
996          print("Generated utest.sh.")          print("Generated utest.sh.")
997            # This version contains only python tests - I want this to be usable
998            # From a binary only install if you have the test files
999            utest=open('itest.sh','w')
1000            utest.write(GroupTest.makeHeader(env['PLATFORM'], prefix, True))
1001            for tests in TestGroups:
1002              if tests.exec_cmd=='$PYTHONRUNNER ':
1003                utest.write(tests.makeString())
1004            utest.close()
1005            Execute(Chmod('itest.sh', 0o755))
1006            print("Generated itest.sh.")        
1007      except IOError:      except IOError:
1008          print("Error attempting to write unittests file.")          print("Error attempting to write unittests file.")
1009          Exit(1)          Exit(1)
1010    
1011        # delete utest.sh upon cleanup
1012        env.Clean('target_init', 'utest.sh')
1013        env.Clean('target_init', 'itest.sh')
1014    
1015      # Make sure that the escript wrapper is in place      # Make sure that the escript wrapper is in place
1016      if not os.path.isfile(os.path.join(env['bininstall'], 'run-escript')):      if not os.path.isfile(os.path.join(env['bininstall'], 'run-escript')):
1017          print("Copying escript wrapper.")          print("Copying escript wrapper.")

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