/[escript]/branches/diaplayground/dudley/src/CPPAdapter/dudleycpp.cpp
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Annotation of /branches/diaplayground/dudley/src/CPPAdapter/dudleycpp.cpp

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Revision 2548 - (hide annotations)
Mon Jul 20 06:20:06 2009 UTC (9 years, 9 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File size: 7709 byte(s)
Updating copyright notices
1 jgs 102
2 ksteube 1312 /*******************************************************
3 ksteube 1811 *
4 jfenwick 2548 * Copyright (c) 2003-2009 by University of Queensland
5 ksteube 1811 * Earth Systems Science Computational Center (ESSCC)
6     * http://www.uq.edu.au/esscc
7     *
8     * Primary Business: Queensland, Australia
9     * Licensed under the Open Software License version 3.0
10     * http://www.opensource.org/licenses/osl-3.0.php
11     *
12     *******************************************************/
13 ksteube 1312
14 ksteube 1811
15 ksteube 817 #ifdef PASO_MPI
16     #include <mpi.h>
17 ksteube 1800 #include "paso/Paso_MPI.h"
18 ksteube 817 #endif
19 jgs 102 extern "C" {
20 robwdcock 682 #include "../Finley.h"
21 jgs 102 }
22 jgs 472
23 jgs 203 #include "MeshAdapter.h"
24     #include "MeshAdapterFactory.h"
25     #include "SystemMatrixAdapter.h"
26 gross 1364 #include "TransportProblemAdapter.h"
27 jgs 102
28 gross 727 #include "FinleyAdapterException.h"
29     // #include "esysUtils/EsysException.h"
30 robwdcock 682 #include "esysUtils/esysExceptionTranslator.h"
31 jgs 102
32 robwdcock 682 #include "escript/AbstractContinuousDomain.h"
33 jgs 102
34     #include <boost/python.hpp>
35     #include <boost/python/module.hpp>
36     #include <boost/python/def.hpp>
37     #include <boost/python/detail/defaults_gen.hpp>
38 jfenwick 2064 #include <boost/version.hpp>
39 jgs 102
40     using namespace boost::python;
41    
42     /**
43 jgs 121 \page finley Finley
44     Finley is the python module name that contains the interfaces
45 jgs 102 to the C++ wrapper to finley.
46    
47 jgs 121 \version 1.0.0
48 jgs 102
49 jgs 121 \section class_desc Class Description:
50 jgs 102 Data
51    
52 jgs 121 \section class_limits Class Limitations:
53 jgs 102 None
54    
55 jgs 121 \section class_conds Class Conditions of Use:
56 jgs 102 None
57    
58 jgs 121 \section throws Throws:
59 jgs 102 None
60    
61     */
62    
63     //
64     // The BOOST_PYTHON_FUNCTION_OVERLOADS macro generates function overloads for optional
65     // arguments to the respective finley functions.
66     // !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
67     //
68     // NOTE: If the number of arguments to the finley functions change
69     // the magic numbers in the BOOST_PYTHON_FUNCTION_OVERLOADS call
70     // must change.
71     //
72     // !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
73     // BOOST_PYTHON_FUNCTION_OVERLOADS(readMesh_overloads,finley::readMesh,1,2)
74     // BOOST_PYTHON_FUNCTION_OVERLOADS(brick_overloads,finley::brick,0,12)
75     // BOOST_PYTHON_FUNCTION_OVERLOADS(rectangle_overloads,finley::rectangle,0,9)
76     // BOOST_PYTHON_FUNCTION_OVERLOADS(interval_overloads,finley::interval,0,6)
77     // BOOST_PYTHON_FUNCTION_OVERLOADS(glueFaces_overloads,finley::glueFaces,1,3)
78     // BOOST_PYTHON_FUNCTION_OVERLOADS(joinFaces_overloads,finley::joinFaces,1,3)
79    
80     BOOST_PYTHON_MODULE(finleycpp)
81     {
82 jfenwick 2064 // This feature was added in boost v1.34
83 phornby 2076 #if ((BOOST_VERSION/100)%1000 > 34) || (BOOST_VERSION/100000 >1)
84 jfenwick 2061 // params are: bool show_user_defined, bool show_py_signatures, bool show_cpp_signatures
85     docstring_options docopt(true, true, false);
86 jfenwick 2064 #endif
87 jgs 102
88     //
89     // NOTE: The return_value_policy is necessary for functions that
90     // return pointers.
91 gross 1382 //
92     register_exception_translator<finley::FinleyAdapterException>(&(esysUtils::esysExceptionTranslator));
93 jgs 102
94 ksteube 1345 def("LoadMesh",finley::loadMesh,
95 jfenwick 1872 (arg("fileName")="file.nc")
96     /* ,return_value_policy<manage_new_object>());*/
97     );
98    
99 jgs 102 def("ReadMesh",finley::readMesh,
100 jfenwick 1872 (arg("fileName")="file.fly",arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1, arg("optimize")=true)
101     /* ,return_value_policy<manage_new_object>());*/
102     );
103 jgs 102
104 gross 934 def("ReadGmsh",finley::readGmsh,
105 jfenwick 1872 (arg("fileName")="file.msh",arg("numDim"), arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1, arg("optimize")=true)
106     // ,return_value_policy<manage_new_object>());
107     );
108 gross 934
109 jgs 102 def ("Brick",finley::brick,
110     (arg("n0")=1,arg("n1")=1,arg("n2")=1,
111     arg("order")=1,
112     arg("l0")=1.0,arg("l1")=1.0,arg("l2")=1.0,
113     arg("periodic0")=false,arg("periodic1")=false,arg("periodic2")=false,
114 gross 1059 arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1,
115 ksteube 1312 arg("useElementsOnFace")=false,
116     arg("useFullElementOrder")=false,
117 jfenwick 1872 arg("optimize")=false)
118     // ,return_value_policy<manage_new_object>());
119     );
120 jgs 102
121     def ("Rectangle",finley::rectangle,
122     (arg("n0")=1,arg("n1")=1,arg("order")=1,
123     arg("l0")=1.0,arg("l1")=1.0,
124     arg("periodic0")=false,arg("periodic1")=false,
125 gross 1059 arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1,
126 ksteube 1312 arg("useElementsOnFace")=false,
127     arg("useFullElementOrder")=false,
128 jfenwick 1872 arg("optimize")=false)
129     // ,return_value_policy<manage_new_object>());
130     );
131 jgs 102
132 jfenwick 1872 def("Merge",finley::meshMerge
133     // ,return_value_policy<manage_new_object>());
134     );
135 jgs 110
136 jgs 102 def("GlueFaces",finley::glueFaces,
137     (arg("safetyFactor")=0.2,
138 gross 1062 arg("tolerance")=1.e-8,
139 jfenwick 1872 arg("optimize")=true)
140     // ,return_value_policy<manage_new_object>());
141     );
142 jgs 102
143     def("JoinFaces",finley::joinFaces,
144     (arg("safetyFactor")=0.2,
145 gross 1062 arg("tolerance")=1.e-8,
146 jfenwick 1872 arg("optimize")=true)
147     // ,return_value_policy<manage_new_object>());
148     );
149 jgs 102
150    
151     class_<finley::MeshAdapter, bases<escript::AbstractContinuousDomain> >
152 jfenwick 2061 ("MeshAdapter","A concrete class representing a domain. For more details, please consult the c++ documentation.",init<optional <Finley_Mesh*> >())
153 jgs 102 .def(init<const finley::MeshAdapter&>())
154     .def("write",&finley::MeshAdapter::write)
155 ksteube 1339 .def("print_mesh_info",&finley::MeshAdapter::Print_Mesh_Info,(arg("full")=false))
156 ksteube 1343 .def("dump",&finley::MeshAdapter::dump)
157 jgs 102 .def("getDescription",&finley::MeshAdapter::getDescription)
158     .def("getDim",&finley::MeshAdapter::getDim)
159     .def("getDataShape",&finley::MeshAdapter::getDataShape)
160 ksteube 1754 .def("getNumDataPointsGlobal",&finley::MeshAdapter::getNumDataPointsGlobal)
161 jgs 102 .def("addPDEToSystem",&finley::MeshAdapter::addPDEToSystem)
162 gross 1204 .def("addPDEToLumpedSystem",&finley::MeshAdapter::addPDEToLumpedSystem)
163 jgs 102 .def("addPDEToRHS",&finley::MeshAdapter::addPDEToRHS)
164 gross 1370 .def("addPDEToTransportProblem",&finley::MeshAdapter::addPDEToTransportProblem)
165 jgs 102 .def("newOperator",&finley::MeshAdapter::newSystemMatrix)
166 gross 1370 .def("newTransportProblem",&finley::MeshAdapter::newTransportProblem)
167 jgs 102 .def("getSystemMatrixTypeId",&finley::MeshAdapter::getSystemMatrixTypeId)
168 gross 1859 .def("getTransportTypeId",&finley::MeshAdapter::getTransportTypeId)
169 jgs 110 .def("setX",&finley::MeshAdapter::setNewX)
170 jgs 102 .def("getX",&finley::MeshAdapter::getX)
171     .def("getNormal",&finley::MeshAdapter::getNormal)
172 jgs 153 .def("getSize",&finley::MeshAdapter::getSize)
173     .def("saveDX",&finley::MeshAdapter::saveDX)
174 gross 1044 .def("saveVTK",&finley::MeshAdapter::saveVTK)
175     .def("setTagMap",&finley::MeshAdapter::setTagMap)
176     .def("getTag",&finley::MeshAdapter::getTag)
177     .def("isValidTagName",&finley::MeshAdapter::isValidTagName)
178 ksteube 1312 .def("showTagNames",&finley::MeshAdapter::showTagNames)
179     .def("getMPISize",&finley::MeshAdapter::getMPISize)
180 ksteube 1877 .def("getMPIRank",&finley::MeshAdapter::getMPIRank)
181     .def("MPIBarrier",&finley::MeshAdapter::MPIBarrier)
182     .def("onMasterProcessor",&finley::MeshAdapter::onMasterProcessor);
183 jgs 102
184     class_<finley::SystemMatrixAdapter, bases<escript::AbstractSystemMatrix> >
185 jfenwick 2061 ("OperatorAdapter","A concrete class representing an operator. For more details, please see the c++ documentation.", no_init)
186 ksteube 1339 .def("print_matrix_info",&finley::SystemMatrixAdapter::Print_Matrix_Info,(arg("full")=false))
187 jgs 102 .def("nullifyRowsAndCols",&finley::SystemMatrixAdapter::nullifyRowsAndCols)
188 jgs 149 .def("resetValues",&finley::SystemMatrixAdapter::resetValues)
189 jgs 123 .def("saveMM",&finley::SystemMatrixAdapter::saveMM)
190     .def("saveHB",&finley::SystemMatrixAdapter::saveHB);
191 jgs 102
192 gross 1364 class_<finley::TransportProblemAdapter, bases<escript::AbstractTransportProblem> >
193 jfenwick 2061 ("TransportProblemAdapter","",no_init)
194 gross 1407 .def("getSafeTimeStepSize",&finley::TransportProblemAdapter::getSafeTimeStepSize)
195 gross 1859 .def("getUnlimitedTimeStepSize",&finley::TransportProblemAdapter::getUnlimitedTimeStepSize)
196 gross 1364 .def("resetTransport",&finley::TransportProblemAdapter::resetTransport);
197 jgs 102 }

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