/[escript]/branches/diaplayground/finley/src/CPPAdapter/MeshAdapter.cpp
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revision 1059 by gross, Fri Mar 23 11:01:53 2007 UTC revision 2748 by gross, Tue Nov 17 07:32:59 2009 UTC
# Line 1  Line 1 
 // $Id$  
 /*  
  ******************************************************************************  
  *                                                                            *  
  *       COPYRIGHT  ACcESS 2004 -  All Rights Reserved                        *  
  *                                                                            *  
  * This software is the property of ACcESS. No part of this code              *  
  * may be copied in any form or by any means without the expressed written    *  
  * consent of ACcESS.  Copying, use or modification of this software          *  
  * by any unauthorised person is illegal unless that person has a software    *  
  * license agreement with ACcESS.                                             *  
  *                                                                            *  
  ******************************************************************************  
 */  
1    
2  #ifdef PASO_MPI  /*******************************************************
3  #include <mpi.h>  *
4  #endif  * Copyright (c) 2003-2009 by University of Queensland
5  #include "MeshAdapter.h"  * Earth Systems Science Computational Center (ESSCC)
6    * http://www.uq.edu.au/esscc
7    *
8    * Primary Business: Queensland, Australia
9    * Licensed under the Open Software License version 3.0
10    * http://www.opensource.org/licenses/osl-3.0.php
11    *
12    *******************************************************/
13    
14    
15    #include "MeshAdapter.h"
16  #include "escript/Data.h"  #include "escript/Data.h"
17  #include "escript/DataFactory.h"  #include "escript/DataFactory.h"
18    #ifdef USE_NETCDF
19    #include <netcdfcpp.h>
20    #endif
21    #ifdef PASO_MPI
22    #include <mpi.h>
23    #include "paso/Paso_MPI.h"
24    #endif
25    extern "C" {
26    #include "esysUtils/blocktimer.h"
27    }
28    
29  using namespace std;  using namespace std;
30  using namespace escript;  using namespace escript;
# Line 32  MeshAdapter::FunctionSpaceNamesMapType M Line 37  MeshAdapter::FunctionSpaceNamesMapType M
37  const int MeshAdapter::DegreesOfFreedom=FINLEY_DEGREES_OF_FREEDOM;  const int MeshAdapter::DegreesOfFreedom=FINLEY_DEGREES_OF_FREEDOM;
38  const int MeshAdapter::ReducedDegreesOfFreedom=FINLEY_REDUCED_DEGREES_OF_FREEDOM;  const int MeshAdapter::ReducedDegreesOfFreedom=FINLEY_REDUCED_DEGREES_OF_FREEDOM;
39  const int MeshAdapter::Nodes=FINLEY_NODES;  const int MeshAdapter::Nodes=FINLEY_NODES;
40    const int MeshAdapter::ReducedNodes=FINLEY_REDUCED_NODES;
41  const int MeshAdapter::Elements=FINLEY_ELEMENTS;  const int MeshAdapter::Elements=FINLEY_ELEMENTS;
42  const int MeshAdapter::ReducedElements=FINLEY_REDUCED_ELEMENTS;  const int MeshAdapter::ReducedElements=FINLEY_REDUCED_ELEMENTS;
43  const int MeshAdapter::FaceElements=FINLEY_FACE_ELEMENTS;  const int MeshAdapter::FaceElements=FINLEY_FACE_ELEMENTS;
# Line 44  const int MeshAdapter::ReducedContactEle Line 50  const int MeshAdapter::ReducedContactEle
50    
51  MeshAdapter::MeshAdapter(Finley_Mesh* finleyMesh)  MeshAdapter::MeshAdapter(Finley_Mesh* finleyMesh)
52  {  {
53    setFunctionSpaceTypeNames();     setFunctionSpaceTypeNames();
54    //     //
55    // need to use a null_deleter as Finley_Mesh_dealloc deletes the pointer     // need to use a null_deleter as Finley_Mesh_free deletes the pointer
56    // for us.     // for us.
57    m_finleyMesh.reset(finleyMesh,null_deleter());     m_finleyMesh.reset(finleyMesh,null_deleter());
58  }  }
59    
60  //  //
# Line 56  MeshAdapter::MeshAdapter(Finley_Mesh* fi Line 62  MeshAdapter::MeshAdapter(Finley_Mesh* fi
62  MeshAdapter::MeshAdapter(const MeshAdapter& in):  MeshAdapter::MeshAdapter(const MeshAdapter& in):
63  m_finleyMesh(in.m_finleyMesh)  m_finleyMesh(in.m_finleyMesh)
64  {  {
65    setFunctionSpaceTypeNames();     setFunctionSpaceTypeNames();
66  }  }
67    
68  MeshAdapter::~MeshAdapter()  MeshAdapter::~MeshAdapter()
69  {  {
70    //     //
71    // I hope the case for the pointer being zero has been taken care of.     // I hope the case for the pointer being zero has been taken care of.
72    //  cout << "In MeshAdapter destructor." << endl;     //  cout << "In MeshAdapter destructor." << endl;
73    if (m_finleyMesh.unique()) {     if (m_finleyMesh.unique()) {
74      //   cout << "Calling dealloc." << endl;        Finley_Mesh_free(m_finleyMesh.get());
75      Finley_Mesh_dealloc(m_finleyMesh.get());     }
76      //   cout << "Finished dealloc." << endl;  }
77    }  
78    int MeshAdapter::getMPISize() const
79    {
80       return m_finleyMesh.get()->MPIInfo->size;
81    }
82    int MeshAdapter::getMPIRank() const
83    {
84       return m_finleyMesh.get()->MPIInfo->rank;
85    }
86    void MeshAdapter::MPIBarrier() const
87    {
88    #ifdef PASO_MPI
89       MPI_Barrier(m_finleyMesh.get()->MPIInfo->comm);
90    #endif
91       return;
92    }
93    bool MeshAdapter::onMasterProcessor() const
94    {
95       return m_finleyMesh.get()->MPIInfo->rank == 0;
96    }
97    
98    
99    #ifdef PASO_MPI
100      MPI_Comm
101    #else
102      unsigned int
103    #endif
104    MeshAdapter::getMPIComm() const
105    {
106    #ifdef PASO_MPI
107        return m_finleyMesh->MPIInfo->comm;
108    #else
109        return 0;
110    #endif
111  }  }
112    
113    
114  Finley_Mesh* MeshAdapter::getFinley_Mesh() const {  Finley_Mesh* MeshAdapter::getFinley_Mesh() const {
115     return m_finleyMesh.get();     return m_finleyMesh.get();
116  }  }
117    
118  void MeshAdapter::write(const std::string& fileName) const  void MeshAdapter::write(const std::string& fileName) const
119  {  {
120    char *fName = (fileName.size()+1>0) ? TMPMEMALLOC(fileName.size()+1,char) : (char*)NULL;     char *fName = (fileName.size()+1>0) ? TMPMEMALLOC(fileName.size()+1,char) : (char*)NULL;
121    strcpy(fName,fileName.c_str());     strcpy(fName,fileName.c_str());
122    Finley_Mesh_write(m_finleyMesh.get(),fName);     Finley_Mesh_write(m_finleyMesh.get(),fName);
123    checkFinleyError();     checkFinleyError();
124    TMPMEMFREE(fName);     TMPMEMFREE(fName);
125    }
126    
127    void MeshAdapter::Print_Mesh_Info(const bool full) const
128    {
129       Finley_PrintMesh_Info(m_finleyMesh.get(), full);
130    }
131    
132    void MeshAdapter::dump(const std::string& fileName) const
133    {
134    #ifdef USE_NETCDF
135       const NcDim* ncdims[12] = {NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL};
136       NcVar *ids;
137       int *int_ptr;
138       Finley_Mesh *mesh = m_finleyMesh.get();
139       Finley_TagMap* tag_map;
140       int num_Tags = 0;
141       int mpi_size             = mesh->MPIInfo->size;
142       int mpi_rank             = mesh->MPIInfo->rank;
143       int numDim               = mesh->Nodes->numDim;
144       int numNodes             = mesh->Nodes->numNodes;
145       int num_Elements         = mesh->Elements->numElements;
146       int num_FaceElements         = mesh->FaceElements->numElements;
147       int num_ContactElements      = mesh->ContactElements->numElements;
148       int num_Points           = mesh->Points->numElements;
149       int num_Elements_numNodes        = mesh->Elements->numNodes;
150       int num_FaceElements_numNodes    = mesh->FaceElements->numNodes;
151       int num_ContactElements_numNodes = mesh->ContactElements->numNodes;
152    #ifdef PASO_MPI
153       MPI_Status status;
154    #endif
155    
156    /* Incoming token indicates it's my turn to write */
157    #ifdef PASO_MPI
158       if (mpi_rank>0) MPI_Recv(&num_Tags, 0, MPI_INT, mpi_rank-1, 81800, mesh->MPIInfo->comm, &status);
159    #endif
160    
161       char *newFileName = Paso_MPI_appendRankToFileName(fileName.c_str(),
162                                                         mpi_size, mpi_rank);
163    
164       /* Figure out how much storage is required for tags */
165       tag_map = mesh->TagMap;
166       num_Tags = 0;
167       if (tag_map) {
168          while (tag_map) {
169             num_Tags++;
170             tag_map=tag_map->next;
171          }
172       }
173    
174       // NetCDF error handler
175       NcError err(NcError::verbose_nonfatal);
176       // Create the file.
177       NcFile dataFile(newFileName, NcFile::Replace);
178       // check if writing was successful
179       if (!dataFile.is_valid())
180          throw DataException("Error - MeshAdapter::dump: opening of NetCDF file for output failed: " + *newFileName);
181    
182       // Define dimensions (num_Elements and dim_Elements are identical, dim_Elements only appears if > 0)
183       if (! (ncdims[0] = dataFile.add_dim("numNodes", numNodes)) )
184          throw DataException("Error - MeshAdapter::dump: appending dimension numNodes to netCDF file failed: " + *newFileName);
185       if (! (ncdims[1] = dataFile.add_dim("numDim", numDim)) )
186          throw DataException("Error - MeshAdapter::dump: appending dimension numDim to netCDF file failed: " + *newFileName);
187       if (! (ncdims[2] = dataFile.add_dim("mpi_size_plus_1", mpi_size+1)) )
188          throw DataException("Error - MeshAdapter::dump: appending dimension mpi_size to netCDF file failed: " + *newFileName);
189       if (num_Elements>0)
190          if (! (ncdims[3] = dataFile.add_dim("dim_Elements", num_Elements)) )
191             throw DataException("Error - MeshAdapter::dump: appending dimension dim_Elements to netCDF file failed: " + *newFileName);
192       if (num_FaceElements>0)
193          if (! (ncdims[4] = dataFile.add_dim("dim_FaceElements", num_FaceElements)) )
194             throw DataException("Error - MeshAdapter::dump: appending dimension dim_FaceElements to netCDF file failed: " + *newFileName);
195       if (num_ContactElements>0)
196          if (! (ncdims[5] = dataFile.add_dim("dim_ContactElements", num_ContactElements)) )
197             throw DataException("Error - MeshAdapter::dump: appending dimension dim_ContactElements to netCDF file failed: " + *newFileName);
198       if (num_Points>0)
199          if (! (ncdims[6] = dataFile.add_dim("dim_Points", num_Points)) )
200             throw DataException("Error - MeshAdapter::dump: appending dimension dim_Points to netCDF file failed: " + *newFileName);
201       if (num_Elements>0)
202          if (! (ncdims[7] = dataFile.add_dim("dim_Elements_Nodes", num_Elements_numNodes)) )
203             throw DataException("Error - MeshAdapter::dump: appending dimension dim_Elements_Nodes to netCDF file failed: " + *newFileName);
204       if (num_FaceElements>0)
205          if (! (ncdims[8] = dataFile.add_dim("dim_FaceElements_numNodes", num_FaceElements_numNodes)) )
206             throw DataException("Error - MeshAdapter::dump: appending dimension dim_FaceElements_numNodes to netCDF file failed: " + *newFileName);
207       if (num_ContactElements>0)
208          if (! (ncdims[9] = dataFile.add_dim("dim_ContactElements_numNodes", num_ContactElements_numNodes)) )
209             throw DataException("Error - MeshAdapter::dump: appending dimension dim_ContactElements_numNodes to netCDF file failed: " + *newFileName);
210       if (num_Tags>0)
211          if (! (ncdims[10] = dataFile.add_dim("dim_Tags", num_Tags)) )
212             throw DataException("Error - MeshAdapter::dump: appending dimension dim_Tags to netCDF file failed: " + *newFileName);
213    
214       // Attributes: MPI size, MPI rank, Name, order, reduced_order
215       if (!dataFile.add_att("mpi_size", mpi_size) )
216          throw DataException("Error - MeshAdapter::dump: appending mpi_size to NetCDF file failed: " + *newFileName);
217       if (!dataFile.add_att("mpi_rank", mpi_rank) )
218          throw DataException("Error - MeshAdapter::dump: appending mpi_rank to NetCDF file failed: " + *newFileName);
219       if (!dataFile.add_att("Name",mesh->Name) )
220          throw DataException("Error - MeshAdapter::dump: appending Name to NetCDF file failed: " + *newFileName);
221       if (!dataFile.add_att("numDim",numDim) )
222          throw DataException("Error - MeshAdapter::dump: appending order to NetCDF file failed: " + *newFileName);
223       if (!dataFile.add_att("order",mesh->order) )
224          throw DataException("Error - MeshAdapter::dump: appending order to NetCDF file failed: " + *newFileName);
225       if (!dataFile.add_att("reduced_order",mesh->reduced_order) )
226          throw DataException("Error - MeshAdapter::dump: appending reduced_order to NetCDF file failed: " + *newFileName);
227       if (!dataFile.add_att("numNodes",numNodes) )
228          throw DataException("Error - MeshAdapter::dump: appending numNodes to NetCDF file failed: " + *newFileName);
229       if (!dataFile.add_att("num_Elements",num_Elements) )
230          throw DataException("Error - MeshAdapter::dump: appending num_Elements to NetCDF file failed: " + *newFileName);
231       if (!dataFile.add_att("num_FaceElements",num_FaceElements) )
232          throw DataException("Error - MeshAdapter::dump: appending num_FaceElements to NetCDF file failed: " + *newFileName);
233       if (!dataFile.add_att("num_ContactElements",num_ContactElements) )
234          throw DataException("Error - MeshAdapter::dump: appending num_ContactElements to NetCDF file failed: " + *newFileName);
235       if (!dataFile.add_att("num_Points",num_Points) )
236          throw DataException("Error - MeshAdapter::dump: appending num_Points to NetCDF file failed: " + *newFileName);
237       if (!dataFile.add_att("num_Elements_numNodes",num_Elements_numNodes) )
238          throw DataException("Error - MeshAdapter::dump: appending num_Elements_numNodes to NetCDF file failed: " + *newFileName);
239       if (!dataFile.add_att("num_FaceElements_numNodes",num_FaceElements_numNodes) )
240          throw DataException("Error - MeshAdapter::dump: appending num_FaceElements_numNodes to NetCDF file failed: " + *newFileName);
241       if (!dataFile.add_att("num_ContactElements_numNodes",num_ContactElements_numNodes) )
242          throw DataException("Error - MeshAdapter::dump: appending num_ContactElements_numNodes to NetCDF file failed: " + *newFileName);
243       if (!dataFile.add_att("Elements_TypeId", mesh->Elements->referenceElementSet->referenceElement->Type->TypeId) )
244          throw DataException("Error - MeshAdapter::dump: appending Elements_TypeId to NetCDF file failed: " + *newFileName);
245       if (!dataFile.add_att("FaceElements_TypeId", mesh->FaceElements->referenceElementSet->referenceElement->Type->TypeId) )
246          throw DataException("Error - MeshAdapter::dump: appending FaceElements_TypeId to NetCDF file failed: " + *newFileName);
247       if (!dataFile.add_att("ContactElements_TypeId", mesh->ContactElements->referenceElementSet->referenceElement->Type->TypeId) )
248          throw DataException("Error - MeshAdapter::dump: appending ContactElements_TypeId to NetCDF file failed: " + *newFileName);
249       if (!dataFile.add_att("Points_TypeId", mesh->Points->referenceElementSet->referenceElement->Type->TypeId) )
250          throw DataException("Error - MeshAdapter::dump: appending Points_TypeId to NetCDF file failed: " + *newFileName);
251       if (!dataFile.add_att("num_Tags", num_Tags) )
252          throw DataException("Error - MeshAdapter::dump: appending num_Tags to NetCDF file failed: " + *newFileName);
253    
254       // // // // // Nodes // // // // //
255    
256       // Only write nodes if non-empty because NetCDF doesn't like empty arrays (it treats them as NC_UNLIMITED)
257       if (numNodes>0) {
258    
259          // Nodes Id
260          if (! ( ids = dataFile.add_var("Nodes_Id", ncInt, ncdims[0])) )
261             throw DataException("Error - MeshAdapter::dump: appending Nodes_Id to netCDF file failed: " + *newFileName);
262          int_ptr = &mesh->Nodes->Id[0];
263          if (! (ids->put(int_ptr, numNodes)) )
264             throw DataException("Error - MeshAdapter::dump: copy Nodes_Id to netCDF buffer failed: " + *newFileName);
265    
266          // Nodes Tag
267          if (! ( ids = dataFile.add_var("Nodes_Tag", ncInt, ncdims[0])) )
268             throw DataException("Error - MeshAdapter::dump: appending Nodes_Tag to netCDF file failed: " + *newFileName);
269          int_ptr = &mesh->Nodes->Tag[0];
270          if (! (ids->put(int_ptr, numNodes)) )
271             throw DataException("Error - MeshAdapter::dump: copy Nodes_Tag to netCDF buffer failed: " + *newFileName);
272    
273          // Nodes gDOF
274          if (! ( ids = dataFile.add_var("Nodes_gDOF", ncInt, ncdims[0])) )
275             throw DataException("Error - MeshAdapter::dump: appending Nodes_gDOF to netCDF file failed: " + *newFileName);
276          int_ptr = &mesh->Nodes->globalDegreesOfFreedom[0];
277          if (! (ids->put(int_ptr, numNodes)) )
278             throw DataException("Error - MeshAdapter::dump: copy Nodes_gDOF to netCDF buffer failed: " + *newFileName);
279    
280          // Nodes global node index
281          if (! ( ids = dataFile.add_var("Nodes_gNI", ncInt, ncdims[0])) )
282             throw DataException("Error - MeshAdapter::dump: appending Nodes_gNI to netCDF file failed: " + *newFileName);
283          int_ptr = &mesh->Nodes->globalNodesIndex[0];
284          if (! (ids->put(int_ptr, numNodes)) )
285             throw DataException("Error - MeshAdapter::dump: copy Nodes_gNI to netCDF buffer failed: " + *newFileName);
286    
287          // Nodes grDof
288          if (! ( ids = dataFile.add_var("Nodes_grDfI", ncInt, ncdims[0])) )
289             throw DataException("Error - MeshAdapter::dump: appending Nodes_grDfI to netCDF file failed: " + *newFileName);
290          int_ptr = &mesh->Nodes->globalReducedDOFIndex[0];
291          if (! (ids->put(int_ptr, numNodes)) )
292             throw DataException("Error - MeshAdapter::dump: copy Nodes_grDfI to netCDF buffer failed: " + *newFileName);
293    
294          // Nodes grNI
295          if (! ( ids = dataFile.add_var("Nodes_grNI", ncInt, ncdims[0])) )
296             throw DataException("Error - MeshAdapter::dump: appending Nodes_grNI to netCDF file failed: " + *newFileName);
297          int_ptr = &mesh->Nodes->globalReducedNodesIndex[0];
298          if (! (ids->put(int_ptr, numNodes)) )
299             throw DataException("Error - MeshAdapter::dump: copy Nodes_grNI to netCDF buffer failed: " + *newFileName);
300    
301          // Nodes Coordinates
302          if (! ( ids = dataFile.add_var("Nodes_Coordinates", ncDouble, ncdims[0], ncdims[1]) ) )
303             throw DataException("Error - MeshAdapter::dump: appending Nodes_Coordinates to netCDF file failed: " + *newFileName);
304          if (! (ids->put(&(mesh->Nodes->Coordinates[INDEX2(0,0,numDim)]), numNodes, numDim)) )
305             throw DataException("Error - MeshAdapter::dump: copy Nodes_Coordinates to netCDF buffer failed: " + *newFileName);
306    
307          // Nodes degreesOfFreedomDistribution
308          if (! ( ids = dataFile.add_var("Nodes_DofDistribution", ncInt, ncdims[2])) )
309             throw DataException("Error - MeshAdapter::dump: appending Nodes_DofDistribution to netCDF file failed: " + *newFileName);
310          int_ptr = &mesh->Nodes->degreesOfFreedomDistribution->first_component[0];
311          if (! (ids->put(int_ptr, mpi_size+1)) )
312             throw DataException("Error - MeshAdapter::dump: copy Nodes_DofDistribution to netCDF buffer failed: " + *newFileName);
313    
314          // Nodes nodeDistribution
315          if (! ( ids = dataFile.add_var("Nodes_NodeDistribution", ncInt, ncdims[2])) )
316             throw DataException("Error - MeshAdapter::dump: appending Nodes_NodeDistribution to netCDF file failed: " + *newFileName);
317          int_ptr = &mesh->Nodes->nodesDistribution->first_component[0];
318          if (! (ids->put(int_ptr, mpi_size+1)) )
319             throw DataException("Error - MeshAdapter::dump: copy Nodes_NodeDistribution to netCDF buffer failed: " + *newFileName);
320    
321       }
322    
323       // // // // // Elements // // // // //
324    
325       if (num_Elements>0) {
326    
327          // Elements_Id
328          if (! ( ids = dataFile.add_var("Elements_Id", ncInt, ncdims[3])) )
329             throw DataException("Error - MeshAdapter::dump: appending Elements_Id to netCDF file failed: " + *newFileName);
330          int_ptr = &mesh->Elements->Id[0];
331          if (! (ids->put(int_ptr, num_Elements)) )
332             throw DataException("Error - MeshAdapter::dump: copy Elements_Id to netCDF buffer failed: " + *newFileName);
333    
334          // Elements_Tag
335          if (! ( ids = dataFile.add_var("Elements_Tag", ncInt, ncdims[3])) )
336             throw DataException("Error - MeshAdapter::dump: appending Elements_Tag to netCDF file failed: " + *newFileName);
337          int_ptr = &mesh->Elements->Tag[0];
338          if (! (ids->put(int_ptr, num_Elements)) )
339             throw DataException("Error - MeshAdapter::dump: copy Elements_Tag to netCDF buffer failed: " + *newFileName);
340    
341          // Elements_Owner
342          if (! ( ids = dataFile.add_var("Elements_Owner", ncInt, ncdims[3])) )
343             throw DataException("Error - MeshAdapter::dump: appending Elements_Owner to netCDF file failed: " + *newFileName);
344          int_ptr = &mesh->Elements->Owner[0];
345          if (! (ids->put(int_ptr, num_Elements)) )
346             throw DataException("Error - MeshAdapter::dump: copy Elements_Owner to netCDF buffer failed: " + *newFileName);
347    
348          // Elements_Color
349          if (! ( ids = dataFile.add_var("Elements_Color", ncInt, ncdims[3])) )
350             throw DataException("Error - MeshAdapter::dump: appending Elements_Color to netCDF file failed: " + *newFileName);
351          int_ptr = &mesh->Elements->Color[0];
352          if (! (ids->put(int_ptr, num_Elements)) )
353             throw DataException("Error - MeshAdapter::dump: copy Elements_Color to netCDF buffer failed: " + *newFileName);
354    
355          // Elements_Nodes
356          if (! ( ids = dataFile.add_var("Elements_Nodes", ncInt, ncdims[3], ncdims[7]) ) )
357             throw DataException("Error - MeshAdapter::dump: appending Elements_Nodes to netCDF file failed: " + *newFileName);
358          if (! (ids->put(&(mesh->Elements->Nodes[0]), num_Elements, num_Elements_numNodes)) )
359             throw DataException("Error - MeshAdapter::dump: copy Elements_Nodes to netCDF buffer failed: " + *newFileName);
360    
361       }
362    
363       // // // // // Face_Elements // // // // //
364    
365       if (num_FaceElements>0) {
366    
367          // FaceElements_Id
368          if (! ( ids = dataFile.add_var("FaceElements_Id", ncInt, ncdims[4])) )
369             throw DataException("Error - MeshAdapter::dump: appending FaceElements_Id to netCDF file failed: " + *newFileName);
370          int_ptr = &mesh->FaceElements->Id[0];
371          if (! (ids->put(int_ptr, num_FaceElements)) )
372             throw DataException("Error - MeshAdapter::dump: copy FaceElements_Id to netCDF buffer failed: " + *newFileName);
373    
374          // FaceElements_Tag
375          if (! ( ids = dataFile.add_var("FaceElements_Tag", ncInt, ncdims[4])) )
376             throw DataException("Error - MeshAdapter::dump: appending FaceElements_Tag to netCDF file failed: " + *newFileName);
377          int_ptr = &mesh->FaceElements->Tag[0];
378          if (! (ids->put(int_ptr, num_FaceElements)) )
379             throw DataException("Error - MeshAdapter::dump: copy FaceElements_Tag to netCDF buffer failed: " + *newFileName);
380    
381          // FaceElements_Owner
382          if (! ( ids = dataFile.add_var("FaceElements_Owner", ncInt, ncdims[4])) )
383             throw DataException("Error - MeshAdapter::dump: appending FaceElements_Owner to netCDF file failed: " + *newFileName);
384          int_ptr = &mesh->FaceElements->Owner[0];
385          if (! (ids->put(int_ptr, num_FaceElements)) )
386             throw DataException("Error - MeshAdapter::dump: copy FaceElements_Owner to netCDF buffer failed: " + *newFileName);
387    
388          // FaceElements_Color
389          if (! ( ids = dataFile.add_var("FaceElements_Color", ncInt, ncdims[4])) )
390             throw DataException("Error - MeshAdapter::dump: appending FaceElements_Color to netCDF file failed: " + *newFileName);
391          int_ptr = &mesh->FaceElements->Color[0];
392          if (! (ids->put(int_ptr, num_FaceElements)) )
393             throw DataException("Error - MeshAdapter::dump: copy FaceElements_Color to netCDF buffer failed: " + *newFileName);
394    
395          // FaceElements_Nodes
396          if (! ( ids = dataFile.add_var("FaceElements_Nodes", ncInt, ncdims[4], ncdims[8]) ) )
397             throw DataException("Error - MeshAdapter::dump: appending FaceElements_Nodes to netCDF file failed: " + *newFileName);
398          if (! (ids->put(&(mesh->FaceElements->Nodes[0]), num_FaceElements, num_FaceElements_numNodes)) )
399             throw DataException("Error - MeshAdapter::dump: copy FaceElements_Nodes to netCDF buffer failed: " + *newFileName);
400    
401       }
402    
403       // // // // // Contact_Elements // // // // //
404    
405       if (num_ContactElements>0) {
406    
407          // ContactElements_Id
408          if (! ( ids = dataFile.add_var("ContactElements_Id", ncInt, ncdims[5])) )
409             throw DataException("Error - MeshAdapter::dump: appending ContactElements_Id to netCDF file failed: " + *newFileName);
410          int_ptr = &mesh->ContactElements->Id[0];
411          if (! (ids->put(int_ptr, num_ContactElements)) )
412             throw DataException("Error - MeshAdapter::dump: copy ContactElements_Id to netCDF buffer failed: " + *newFileName);
413    
414          // ContactElements_Tag
415          if (! ( ids = dataFile.add_var("ContactElements_Tag", ncInt, ncdims[5])) )
416             throw DataException("Error - MeshAdapter::dump: appending ContactElements_Tag to netCDF file failed: " + *newFileName);
417          int_ptr = &mesh->ContactElements->Tag[0];
418          if (! (ids->put(int_ptr, num_ContactElements)) )
419             throw DataException("Error - MeshAdapter::dump: copy ContactElements_Tag to netCDF buffer failed: " + *newFileName);
420    
421          // ContactElements_Owner
422          if (! ( ids = dataFile.add_var("ContactElements_Owner", ncInt, ncdims[5])) )
423             throw DataException("Error - MeshAdapter::dump: appending ContactElements_Owner to netCDF file failed: " + *newFileName);
424          int_ptr = &mesh->ContactElements->Owner[0];
425          if (! (ids->put(int_ptr, num_ContactElements)) )
426             throw DataException("Error - MeshAdapter::dump: copy ContactElements_Owner to netCDF buffer failed: " + *newFileName);
427    
428          // ContactElements_Color
429          if (! ( ids = dataFile.add_var("ContactElements_Color", ncInt, ncdims[5])) )
430             throw DataException("Error - MeshAdapter::dump: appending ContactElements_Color to netCDF file failed: " + *newFileName);
431          int_ptr = &mesh->ContactElements->Color[0];
432          if (! (ids->put(int_ptr, num_ContactElements)) )
433             throw DataException("Error - MeshAdapter::dump: copy ContactElements_Color to netCDF buffer failed: " + *newFileName);
434    
435          // ContactElements_Nodes
436          if (! ( ids = dataFile.add_var("ContactElements_Nodes", ncInt, ncdims[5], ncdims[9]) ) )
437             throw DataException("Error - MeshAdapter::dump: appending ContactElements_Nodes to netCDF file failed: " + *newFileName);
438          if (! (ids->put(&(mesh->ContactElements->Nodes[0]), num_ContactElements, num_ContactElements_numNodes)) )
439             throw DataException("Error - MeshAdapter::dump: copy ContactElements_Nodes to netCDF buffer failed: " + *newFileName);
440    
441       }
442    
443       // // // // // Points // // // // //
444    
445       if (num_Points>0) {
446    
447          fprintf(stderr, "\n\n\nWARNING: MeshAdapter::dump has not been tested with Point elements\n\n\n");
448    
449          // Points_Id
450          if (! ( ids = dataFile.add_var("Points_Id", ncInt, ncdims[6])) )
451             throw DataException("Error - MeshAdapter::dump: appending Points_Id to netCDF file failed: " + *newFileName);
452          int_ptr = &mesh->Points->Id[0];
453          if (! (ids->put(int_ptr, num_Points)) )
454             throw DataException("Error - MeshAdapter::dump: copy Points_Id to netCDF buffer failed: " + *newFileName);
455    
456          // Points_Tag
457          if (! ( ids = dataFile.add_var("Points_Tag", ncInt, ncdims[6])) )
458             throw DataException("Error - MeshAdapter::dump: appending Points_Tag to netCDF file failed: " + *newFileName);
459          int_ptr = &mesh->Points->Tag[0];
460          if (! (ids->put(int_ptr, num_Points)) )
461             throw DataException("Error - MeshAdapter::dump: copy Points_Tag to netCDF buffer failed: " + *newFileName);
462    
463          // Points_Owner
464          if (! ( ids = dataFile.add_var("Points_Owner", ncInt, ncdims[6])) )
465             throw DataException("Error - MeshAdapter::dump: appending Points_Owner to netCDF file failed: " + *newFileName);
466          int_ptr = &mesh->Points->Owner[0];
467          if (! (ids->put(int_ptr, num_Points)) )
468             throw DataException("Error - MeshAdapter::dump: copy Points_Owner to netCDF buffer failed: " + *newFileName);
469    
470          // Points_Color
471          if (! ( ids = dataFile.add_var("Points_Color", ncInt, ncdims[6])) )
472             throw DataException("Error - MeshAdapter::dump: appending Points_Color to netCDF file failed: " + *newFileName);
473          int_ptr = &mesh->Points->Color[0];
474          if (! (ids->put(int_ptr, num_Points)) )
475             throw DataException("Error - MeshAdapter::dump: copy Points_Color to netCDF buffer failed: " + *newFileName);
476    
477          // Points_Nodes
478          // mesh->Nodes->Id[mesh->Points->Nodes[INDEX2(0,i,1)]]
479          if (! ( ids = dataFile.add_var("Points_Nodes", ncInt, ncdims[6]) ) )
480             throw DataException("Error - MeshAdapter::dump: appending Points_Nodes to netCDF file failed: " + *newFileName);
481          if (! (ids->put(&(mesh->Points->Nodes[0]), num_Points)) )
482             throw DataException("Error - MeshAdapter::dump: copy Points_Nodes to netCDF buffer failed: " + *newFileName);
483    
484       }
485    
486       // // // // // TagMap // // // // //
487    
488       if (num_Tags>0) {
489    
490          // Temp storage to gather node IDs
491          int *Tags_keys = TMPMEMALLOC(num_Tags, int);
492          char name_temp[4096];
493    
494          /* Copy tag data into temp arrays */
495          tag_map = mesh->TagMap;
496          if (tag_map) {
497             int i = 0;
498             while (tag_map) {
499                Tags_keys[i++] = tag_map->tag_key;
500                tag_map=tag_map->next;
501             }
502          }
503    
504          // Tags_keys
505          if (! ( ids = dataFile.add_var("Tags_keys", ncInt, ncdims[10])) )
506             throw DataException("Error - MeshAdapter::dump: appending Tags_keys to netCDF file failed: " + *newFileName);
507          int_ptr = &Tags_keys[0];
508          if (! (ids->put(int_ptr, num_Tags)) )
509             throw DataException("Error - MeshAdapter::dump: copy Tags_keys to netCDF buffer failed: " + *newFileName);
510    
511          // Tags_names_*
512          // This is an array of strings, it should be stored as an array but instead I have hacked in one attribute per string
513          // because the NetCDF manual doesn't tell how to do an array of strings
514          tag_map = mesh->TagMap;
515          if (tag_map) {
516             int i = 0;
517             while (tag_map) {
518                sprintf(name_temp, "Tags_name_%d", i);
519                if (!dataFile.add_att(name_temp, tag_map->name) )
520                   throw DataException("Error - MeshAdapter::dump: appending Tags_names_ to NetCDF file failed: " + *newFileName);
521                tag_map=tag_map->next;
522                i++;
523             }
524          }
525    
526          TMPMEMFREE(Tags_keys);
527    
528       }
529    
530    /* Send token to next MPI process so he can take his turn */
531    #ifdef PASO_MPI
532       if (mpi_rank<mpi_size-1) MPI_Send(&num_Tags, 0, MPI_INT, mpi_rank+1, 81800, mesh->MPIInfo->comm);
533    #endif
534    
535       // NetCDF file is closed by destructor of NcFile object
536    
537    #else
538       Finley_setError(IO_ERROR, "MeshAdapter::dump: not configured with NetCDF. Please contact your installation manager.");
539    #endif  /* USE_NETCDF */
540       checkFinleyError();
541  }  }
542    
543  string MeshAdapter::getDescription() const  string MeshAdapter::getDescription() const
544  {  {
545    return "FinleyMesh";     return "FinleyMesh";
546  }  }
547    
548  string MeshAdapter::functionSpaceTypeAsString(int functionSpaceType) const  string MeshAdapter::functionSpaceTypeAsString(int functionSpaceType) const
549  {  {
550    FunctionSpaceNamesMapType::iterator loc;     FunctionSpaceNamesMapType::iterator loc;
551    loc=m_functionSpaceTypeNames.find(functionSpaceType);     loc=m_functionSpaceTypeNames.find(functionSpaceType);
552    if (loc==m_functionSpaceTypeNames.end()) {     if (loc==m_functionSpaceTypeNames.end()) {
553      return "Invalid function space type code.";        return "Invalid function space type code.";
554    } else {     } else {
555      return loc->second;        return loc->second;
556    }     }
557  }  }
558    
559  bool MeshAdapter::isValidFunctionSpaceType(int functionSpaceType) const  bool MeshAdapter::isValidFunctionSpaceType(int functionSpaceType) const
560  {  {
561    FunctionSpaceNamesMapType::iterator loc;     FunctionSpaceNamesMapType::iterator loc;
562    loc=m_functionSpaceTypeNames.find(functionSpaceType);     loc=m_functionSpaceTypeNames.find(functionSpaceType);
563    return (loc!=m_functionSpaceTypeNames.end());     return (loc!=m_functionSpaceTypeNames.end());
564  }  }
565    
566  void MeshAdapter::setFunctionSpaceTypeNames()  void MeshAdapter::setFunctionSpaceTypeNames()
567  {  {
568    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
569      (FunctionSpaceNamesMapType::value_type(DegreesOfFreedom,"Finley_DegreesOfFreedom"));     (FunctionSpaceNamesMapType::value_type(DegreesOfFreedom,"Finley_DegreesOfFreedom"));
570    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
571      (FunctionSpaceNamesMapType::value_type(ReducedDegreesOfFreedom,"Finley_ReducedDegreesOfFreedom"));     (FunctionSpaceNamesMapType::value_type(ReducedDegreesOfFreedom,"Finley_ReducedDegreesOfFreedom"));
572    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
573      (FunctionSpaceNamesMapType::value_type(Nodes,"Finley_Nodes"));     (FunctionSpaceNamesMapType::value_type(Nodes,"Finley_Nodes"));
574    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
575      (FunctionSpaceNamesMapType::value_type(Elements,"Finley_Elements"));     (FunctionSpaceNamesMapType::value_type(ReducedNodes,"Finley_Reduced_Nodes"));
576    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
577      (FunctionSpaceNamesMapType::value_type(ReducedElements,"Finley_Reduced_Elements"));     (FunctionSpaceNamesMapType::value_type(Elements,"Finley_Elements"));
578    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
579      (FunctionSpaceNamesMapType::value_type(FaceElements,"Finley_Face_Elements"));     (FunctionSpaceNamesMapType::value_type(ReducedElements,"Finley_Reduced_Elements"));
580    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
581      (FunctionSpaceNamesMapType::value_type(ReducedFaceElements,"Finley_Reduced_Face_Elements"));     (FunctionSpaceNamesMapType::value_type(FaceElements,"Finley_Face_Elements"));
582    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
583      (FunctionSpaceNamesMapType::value_type(Points,"Finley_Points"));     (FunctionSpaceNamesMapType::value_type(ReducedFaceElements,"Finley_Reduced_Face_Elements"));
584    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
585      (FunctionSpaceNamesMapType::value_type(ContactElementsZero,"Finley_Contact_Elements_0"));     (FunctionSpaceNamesMapType::value_type(Points,"Finley_Points"));
586    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
587      (FunctionSpaceNamesMapType::value_type(ReducedContactElementsZero,"Finley_Reduced_Contact_Elements_0"));     (FunctionSpaceNamesMapType::value_type(ContactElementsZero,"Finley_Contact_Elements_0"));
588    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
589      (FunctionSpaceNamesMapType::value_type(ContactElementsOne,"Finley_Contact_Elements_1"));     (FunctionSpaceNamesMapType::value_type(ReducedContactElementsZero,"Finley_Reduced_Contact_Elements_0"));
590    m_functionSpaceTypeNames.insert     m_functionSpaceTypeNames.insert
591      (FunctionSpaceNamesMapType::value_type(ReducedContactElementsOne,"Finley_Reduced_Contact_Elements_1"));     (FunctionSpaceNamesMapType::value_type(ContactElementsOne,"Finley_Contact_Elements_1"));
592       m_functionSpaceTypeNames.insert
593       (FunctionSpaceNamesMapType::value_type(ReducedContactElementsOne,"Finley_Reduced_Contact_Elements_1"));
594  }  }
595    
596  int MeshAdapter::getContinuousFunctionCode() const  int MeshAdapter::getContinuousFunctionCode() const
597  {  {
598    return Nodes;     return Nodes;
599    }
600    int MeshAdapter::getReducedContinuousFunctionCode() const
601    {
602       return ReducedNodes;
603  }  }
604    
605  int MeshAdapter::getFunctionCode() const  int MeshAdapter::getFunctionCode() const
606  {  {
607    return Elements;     return Elements;
608  }  }
609  int MeshAdapter::getReducedFunctionCode() const  int MeshAdapter::getReducedFunctionCode() const
610  {  {
611    return ReducedElements;     return ReducedElements;
612  }  }
613    
614  int MeshAdapter::getFunctionOnBoundaryCode() const  int MeshAdapter::getFunctionOnBoundaryCode() const
615  {  {
616    return FaceElements;     return FaceElements;
617  }  }
618  int MeshAdapter::getReducedFunctionOnBoundaryCode() const  int MeshAdapter::getReducedFunctionOnBoundaryCode() const
619  {  {
620    return ReducedFaceElements;     return ReducedFaceElements;
621  }  }
622    
623  int MeshAdapter::getFunctionOnContactZeroCode() const  int MeshAdapter::getFunctionOnContactZeroCode() const
624  {  {
625    return ContactElementsZero;     return ContactElementsZero;
626  }  }
627  int MeshAdapter::getReducedFunctionOnContactZeroCode() const  int MeshAdapter::getReducedFunctionOnContactZeroCode() const
628  {  {
629    return ReducedContactElementsZero;     return ReducedContactElementsZero;
630  }  }
631    
632  int MeshAdapter::getFunctionOnContactOneCode() const  int MeshAdapter::getFunctionOnContactOneCode() const
633  {  {
634    return ContactElementsOne;     return ContactElementsOne;
635  }  }
636  int MeshAdapter::getReducedFunctionOnContactOneCode() const  int MeshAdapter::getReducedFunctionOnContactOneCode() const
637  {  {
638    return ReducedContactElementsOne;     return ReducedContactElementsOne;
639  }  }
640    
641  int MeshAdapter::getSolutionCode() const  int MeshAdapter::getSolutionCode() const
642  {  {
643    return DegreesOfFreedom;     return DegreesOfFreedom;
644  }  }
645    
646  int MeshAdapter::getReducedSolutionCode() const  int MeshAdapter::getReducedSolutionCode() const
647  {  {
648    return ReducedDegreesOfFreedom;     return ReducedDegreesOfFreedom;
649  }  }
650    
651  int MeshAdapter::getDiracDeltaFunctionCode() const  int MeshAdapter::getDiracDeltaFunctionCode() const
652  {  {
653    return Points;     return Points;
654  }  }
655    
656  //  //
# Line 196  int MeshAdapter::getDiracDeltaFunctionCo Line 658  int MeshAdapter::getDiracDeltaFunctionCo
658  //  //
659  int MeshAdapter::getDim() const  int MeshAdapter::getDim() const
660  {  {
661    int numDim=Finley_Mesh_getDim(m_finleyMesh.get());     Finley_Mesh* mesh=m_finleyMesh.get();
662    checkFinleyError();     int numDim=Finley_Mesh_getDim(mesh);
663    return numDim;     checkFinleyError();
664       return numDim;
665    }
666    
667    //
668    // Return the number of data points summed across all MPI processes
669    //
670    int MeshAdapter::getNumDataPointsGlobal() const
671    {
672       return Finley_NodeFile_getGlobalNumNodes(m_finleyMesh.get()->Nodes);
673  }  }
674    
675  //  //
# Line 211  pair<int,int> MeshAdapter::getDataShape( Line 682  pair<int,int> MeshAdapter::getDataShape(
682     int numSamples=0;     int numSamples=0;
683     Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
684     switch (functionSpaceCode) {     switch (functionSpaceCode) {
685        case(Nodes):     case(Nodes):
686             numDataPointsPerSample=1;     numDataPointsPerSample=1;
687             if (mesh->Nodes!=NULL) numSamples=mesh->Nodes->numNodes;     numSamples=Finley_NodeFile_getNumNodes(mesh->Nodes);
688             break;     break;
689        case(Elements):     case(ReducedNodes):
690             if (mesh->Elements!=NULL) {     numDataPointsPerSample=1;
691               numSamples=mesh->Elements->numElements;     numSamples=Finley_NodeFile_getNumReducedNodes(mesh->Nodes);
692               numDataPointsPerSample=mesh->Elements->ReferenceElement->numQuadNodes;     break;
693             }     case(Elements):
694             break;     if (mesh->Elements!=NULL) {
695        case(FaceElements):        numSamples=mesh->Elements->numElements;
696             if (mesh->FaceElements!=NULL) {        numDataPointsPerSample=mesh->Elements->referenceElementSet->referenceElement->Parametrization->numQuadNodes;
697                  numDataPointsPerSample=mesh->FaceElements->ReferenceElement->numQuadNodes;     }
698                  numSamples=mesh->FaceElements->numElements;     break;
699             }     case(ReducedElements):
700             break;     if (mesh->Elements!=NULL) {
701        case(Points):        numSamples=mesh->Elements->numElements;
702             if (mesh->Points!=NULL) {        numDataPointsPerSample=mesh->Elements->referenceElementSet->referenceElementReducedQuadrature->Parametrization->numQuadNodes;
703               numDataPointsPerSample=1;     }
704               numSamples=mesh->Points->numElements;     break;
705             }     case(FaceElements):
706             break;     if (mesh->FaceElements!=NULL) {
707        case(ContactElementsZero):        numDataPointsPerSample=mesh->FaceElements->referenceElementSet->referenceElement->Parametrization->numQuadNodes;
708             if (mesh->ContactElements!=NULL) {        numSamples=mesh->FaceElements->numElements;
709               numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes;     }
710               numSamples=mesh->ContactElements->numElements;     break;
711             }     case(ReducedFaceElements):
712             break;     if (mesh->FaceElements!=NULL) {
713        case(ContactElementsOne):        numDataPointsPerSample=mesh->FaceElements->referenceElementSet->referenceElementReducedQuadrature->Parametrization->numQuadNodes;
714             if (mesh->ContactElements!=NULL) {        numSamples=mesh->FaceElements->numElements;
715               numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes;     }
716               numSamples=mesh->ContactElements->numElements;     break;
717             }     case(Points):
718             break;     if (mesh->Points!=NULL) {
719        case(DegreesOfFreedom):        numDataPointsPerSample=1;
720             if (mesh->Nodes!=NULL) {        numSamples=mesh->Points->numElements;
721               numDataPointsPerSample=1;     }
722  #ifndef PASO_MPI     break;
723               numSamples=mesh->Nodes->numDegreesOfFreedom;     case(ContactElementsZero):
724  #else     if (mesh->ContactElements!=NULL) {
725               numSamples=mesh->Nodes->degreeOfFreedomDistribution->numLocal;        numDataPointsPerSample=mesh->ContactElements->referenceElementSet->referenceElement->Parametrization->numQuadNodes;
726  #endif        numSamples=mesh->ContactElements->numElements;
727             }     }
728             break;     break;
729        case(ReducedDegreesOfFreedom):     case(ReducedContactElementsZero):
730             if (mesh->Nodes!=NULL) {     if (mesh->ContactElements!=NULL) {
731               numDataPointsPerSample=1;        numDataPointsPerSample=mesh->ContactElements->referenceElementSet->referenceElementReducedQuadrature->Parametrization->numQuadNodes;
732  #ifndef PASO_MPI        numSamples=mesh->ContactElements->numElements;
733               numSamples=mesh->Nodes->reducedNumDegreesOfFreedom;     }
734  #else     break;
735               numSamples=mesh->Nodes->reducedDegreeOfFreedomDistribution->numLocal;     case(ContactElementsOne):
736  #endif     if (mesh->ContactElements!=NULL) {
737             }        numDataPointsPerSample=mesh->ContactElements->referenceElementSet->referenceElement->Parametrization->numQuadNodes;
738             break;        numSamples=mesh->ContactElements->numElements;
739        default:     }
740          stringstream temp;     break;
741          temp << "Error - Invalid function space type: " << functionSpaceCode << " for domain: " << getDescription();     case(ReducedContactElementsOne):
742          throw FinleyAdapterException(temp.str());     if (mesh->ContactElements!=NULL) {
743          break;        numDataPointsPerSample=mesh->ContactElements->referenceElementSet->referenceElementReducedQuadrature->Parametrization->numQuadNodes;
744        }        numSamples=mesh->ContactElements->numElements;
745        return pair<int,int>(numDataPointsPerSample,numSamples);     }
746       break;
747       case(DegreesOfFreedom):
748       if (mesh->Nodes!=NULL) {
749          numDataPointsPerSample=1;
750          numSamples=Finley_NodeFile_getNumDegreesOfFreedom(mesh->Nodes);
751       }
752       break;
753       case(ReducedDegreesOfFreedom):
754       if (mesh->Nodes!=NULL) {
755          numDataPointsPerSample=1;
756          numSamples=Finley_NodeFile_getNumReducedDegreesOfFreedom(mesh->Nodes);
757       }
758       break;
759       default:
760          stringstream temp;
761          temp << "Error - Invalid function space type: " << functionSpaceCode << " for domain: " << getDescription();
762          throw FinleyAdapterException(temp.str());
763          break;
764       }
765       return pair<int,int>(numDataPointsPerSample,numSamples);
766  }  }
767    
768  //  //
769  // adds linear PDE of second order into a given stiffness matrix and right hand side:  // adds linear PDE of second order into a given stiffness matrix and right hand side:
770  //  //
771  void MeshAdapter::addPDEToSystem(  void MeshAdapter::addPDEToSystem(
772                       SystemMatrixAdapter& mat, escript::Data& rhs,                                   SystemMatrixAdapter& mat, escript::Data& rhs,
773                       const escript::Data& A, const escript::Data& B, const escript::Data& C,const  escript::Data& D,const  escript::Data& X,const  escript::Data& Y,                                   const escript::Data& A, const escript::Data& B, const escript::Data& C,const  escript::Data& D,const  escript::Data& X,const  escript::Data& Y,
774                       const escript::Data& d, const escript::Data& y,                                   const escript::Data& d, const escript::Data& y,
775                       const escript::Data& d_contact,const escript::Data& y_contact) const                                   const escript::Data& d_contact,const escript::Data& y_contact) const
776  {  {
777     escriptDataC _rhs=rhs.getDataC();     escriptDataC _rhs=rhs.getDataC();
778     escriptDataC _A  =A.getDataC();     escriptDataC _A  =A.getDataC();
# Line 307  void MeshAdapter::addPDEToSystem( Line 798  void MeshAdapter::addPDEToSystem(
798     checkFinleyError();     checkFinleyError();
799  }  }
800    
801    void  MeshAdapter::addPDEToLumpedSystem(
802                                            escript::Data& mat,
803                                            const escript::Data& D,
804                                            const escript::Data& d) const
805    {
806       escriptDataC _mat=mat.getDataC();
807       escriptDataC _D=D.getDataC();
808       escriptDataC _d=d.getDataC();
809    
810       Finley_Mesh* mesh=m_finleyMesh.get();
811    
812       Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->Elements,&_mat, &_D);
813       Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->FaceElements,&_mat, &_d);
814    
815       checkFinleyError();
816    }
817    
818    
819  //  //
820  // adds linear PDE of second order into the right hand side only  // adds linear PDE of second order into the right hand side only
821  //  //
# Line 329  void MeshAdapter::addPDEToRHS( escript:: Line 838  void MeshAdapter::addPDEToRHS( escript::
838     Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, 0, &_rhs , 0, 0, 0, 0, 0, &_y_contact );     Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, 0, &_rhs , 0, 0, 0, 0, 0, &_y_contact );
839     checkFinleyError();     checkFinleyError();
840  }  }
841    //
842    // adds PDE of second order into a transport problem
843    //
844    void MeshAdapter::addPDEToTransportProblem(
845                                               TransportProblemAdapter& tp, escript::Data& source, const escript::Data& M,
846                                               const escript::Data& A, const escript::Data& B, const escript::Data& C,
847                                               const  escript::Data& D,const  escript::Data& X,const  escript::Data& Y,
848                                               const escript::Data& d, const escript::Data& y,
849                                               const escript::Data& d_contact,const escript::Data& y_contact) const
850    {
851       DataTypes::ShapeType shape;
852       source.expand();
853       escriptDataC _source=source.getDataC();
854       escriptDataC _M=M.getDataC();
855       escriptDataC _A=A.getDataC();
856       escriptDataC _B=B.getDataC();
857       escriptDataC _C=C.getDataC();
858       escriptDataC _D=D.getDataC();
859       escriptDataC _X=X.getDataC();
860       escriptDataC _Y=Y.getDataC();
861       escriptDataC _d=d.getDataC();
862       escriptDataC _y=y.getDataC();
863       escriptDataC _d_contact=d_contact.getDataC();
864       escriptDataC _y_contact=y_contact.getDataC();
865    
866       Finley_Mesh* mesh=m_finleyMesh.get();
867       Paso_FCTransportProblem* _tp = tp.getPaso_FCTransportProblem();
868    
869       Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,_tp->mass_matrix, &_source, 0, 0, 0, &_M, 0, 0 );
870       checkFinleyError();
871    
872       Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,_tp->transport_matrix, &_source, &_A, &_B, &_C, &_D, &_X, &_Y );
873       checkFinleyError();
874    
875       Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, _tp->transport_matrix, &_source, 0, 0, 0, &_d, 0, &_y );
876       checkFinleyError();
877    
878       Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, _tp->transport_matrix, &_source , 0, 0, 0, &_d_contact, 0, &_y_contact );
879       checkFinleyError();
880    }
881    
882  //  //
883  // interpolates data between different function spaces:  // interpolates data between different function spaces:
884  //  //
885  void MeshAdapter::interpolateOnDomain(escript::Data& target,const escript::Data& in) const  void MeshAdapter::interpolateOnDomain(escript::Data& target,const escript::Data& in) const
886  {  {
887    const MeshAdapter& inDomain=dynamic_cast<const MeshAdapter&>(in.getFunctionSpace().getDomain());     const MeshAdapter& inDomain=dynamic_cast<const MeshAdapter&>(*(in.getFunctionSpace().getDomain()));
888    const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain());     const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(*(target.getFunctionSpace().getDomain()));
889    if (inDomain!=*this)       if (inDomain!=*this)  
890      throw FinleyAdapterException("Error - Illegal domain of interpolant.");        throw FinleyAdapterException("Error - Illegal domain of interpolant.");
891    if (targetDomain!=*this)     if (targetDomain!=*this)
892      throw FinleyAdapterException("Error - Illegal domain of interpolation target.");        throw FinleyAdapterException("Error - Illegal domain of interpolation target.");
893    
894    Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
895    switch(in.getFunctionSpace().getTypeCode()) {     escriptDataC _target=target.getDataC();
896       case(Nodes):     escriptDataC _in=in.getDataC();
897          switch(target.getFunctionSpace().getTypeCode()) {     switch(in.getFunctionSpace().getTypeCode()) {
898             case(Nodes):     case(Nodes):
899             case(ReducedDegreesOfFreedom):        switch(target.getFunctionSpace().getTypeCode()) {
900             case(DegreesOfFreedom):        case(Nodes):
901                 Finley_Assemble_CopyNodalData(mesh->Nodes,&(target.getDataC()),&(in.getDataC()));        case(ReducedNodes):
902                 break;        case(DegreesOfFreedom):
903             case(Elements):        case(ReducedDegreesOfFreedom):
904                 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&(in.getDataC()),&(target.getDataC()));        Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
905                 break;        break;
906             case(FaceElements):        case(Elements):
907                 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&(in.getDataC()),&(target.getDataC()));        case(ReducedElements):
908                 break;        Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
909             case(Points):        break;
910                 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&(in.getDataC()),&(target.getDataC()));        case(FaceElements):
911                 break;        case(ReducedFaceElements):
912             case(ContactElementsZero):        Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
913                 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(in.getDataC()),&(target.getDataC()));        break;
914                 break;        case(Points):
915             case(ContactElementsOne):        Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
916                 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(in.getDataC()),&(target.getDataC()));        break;
917                 break;        case(ContactElementsZero):
918             default:        case(ReducedContactElementsZero):
919                 stringstream temp;        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
920                 temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();        break;
921                 throw FinleyAdapterException(temp.str());        case(ContactElementsOne):
922                 break;        case(ReducedContactElementsOne):
923          }        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
924          break;        break;
925       case(Elements):        default:
926          if (target.getFunctionSpace().getTypeCode()==Elements) {           stringstream temp;
927             Finley_Assemble_CopyElementData(mesh->Elements,&(target.getDataC()),&(in.getDataC()));           temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
928          } else {           throw FinleyAdapterException(temp.str());
929             throw FinleyAdapterException("Error - No interpolation with data on elements possible.");           break;
930          }        }
931          break;        break;
932       case(FaceElements):     case(ReducedNodes):
933          if (target.getFunctionSpace().getTypeCode()==FaceElements) {        switch(target.getFunctionSpace().getTypeCode()) {
934             Finley_Assemble_CopyElementData(mesh->FaceElements,&(target.getDataC()),&(in.getDataC()));        case(Nodes):
935          } else {        case(ReducedNodes):
936             throw FinleyAdapterException("Error - No interpolation with data on face elements possible.");        case(DegreesOfFreedom):
937             break;        case(ReducedDegreesOfFreedom):
938         }        Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
939       case(Points):        break;
940          if (target.getFunctionSpace().getTypeCode()==Points) {        case(Elements):
941             Finley_Assemble_CopyElementData(mesh->Points,&(target.getDataC()),&(in.getDataC()));        case(ReducedElements):
942          } else {        Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
943             throw FinleyAdapterException("Error - No interpolation with data on points possible.");        break;
944             break;        case(FaceElements):
945          }        case(ReducedFaceElements):
946          break;        Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
947       case(ContactElementsZero):        break;
948       case(ContactElementsOne):        case(Points):
949          if (target.getFunctionSpace().getTypeCode()==ContactElementsZero || target.getFunctionSpace().getTypeCode()==ContactElementsOne) {        Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
950             Finley_Assemble_CopyElementData(mesh->ContactElements,&(target.getDataC()),&(in.getDataC()));        break;
951          } else {        case(ContactElementsZero):
952             throw FinleyAdapterException("Error - No interpolation with data on contact elements possible.");        case(ReducedContactElementsZero):
953             break;        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
954          }        break;
955          break;        case(ContactElementsOne):
956       case(DegreesOfFreedom):              case(ReducedContactElementsOne):
957          switch(target.getFunctionSpace().getTypeCode()) {        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
958             case(ReducedDegreesOfFreedom):        break;
959             case(DegreesOfFreedom):        default:
960             case(Nodes):           stringstream temp;
961                Finley_Assemble_CopyNodalData(mesh->Nodes,&(target.getDataC()),&(in.getDataC()));           temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
962                break;           throw FinleyAdapterException(temp.str());
963  #ifndef PASO_MPI           break;
964             case(Elements):        }
965                Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&(in.getDataC()),&(target.getDataC()));        break;
966                break;     case(Elements):
967             case(FaceElements):        if (target.getFunctionSpace().getTypeCode()==Elements) {
968                Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&(in.getDataC()),&(target.getDataC()));           Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
969                break;        } else if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
970             case(Points):           Finley_Assemble_AverageElementData(mesh->Elements,&_target,&_in);
971                Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&(in.getDataC()),&(target.getDataC()));        } else {
972                break;           throw FinleyAdapterException("Error - No interpolation with data on elements possible.");
973             case(ContactElementsZero):        }
974             case(ContactElementsOne):        break;
975                Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(in.getDataC()),&(target.getDataC()));     case(ReducedElements):
976               break;        if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
977  #else           Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
978             /* need to copy Degrees of freedom data to nodal data so that the external values are available */        } else {
979             case(Elements):           throw FinleyAdapterException("Error - No interpolation with data on elements with reduced integration order possible.");
980             {        }
981                escript::Data nodeTemp( in, continuousFunction(asAbstractContinuousDomain()) );        break;
982                Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&(nodeTemp.getDataC()),&(target.getDataC()));     case(FaceElements):
983                break;        if (target.getFunctionSpace().getTypeCode()==FaceElements) {
984             }           Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
985             case(FaceElements):        } else if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {
986             {           Finley_Assemble_AverageElementData(mesh->FaceElements,&_target,&_in);
987                escript::Data nodeTemp( in, continuousFunction(asAbstractContinuousDomain()) );        } else {
988                Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&(nodeTemp.getDataC()),&(target.getDataC()));           throw FinleyAdapterException("Error - No interpolation with data on face elements possible.");
989                break;        }
990             }        break;
991             case(Points):     case(ReducedFaceElements):
992             {        if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {
993                escript::Data nodeTemp( in, continuousFunction(asAbstractContinuousDomain()) );           Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
994                Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&(nodeTemp.getDataC()),&(target.getDataC()));        } else {
995                break;           throw FinleyAdapterException("Error - No interpolation with data on face elements with reduced integration order possible.");
996             }        }
997             case(ContactElementsZero):        break;
998             case(ContactElementsOne):     case(Points):
999             {        if (target.getFunctionSpace().getTypeCode()==Points) {
1000                escript::Data nodeTemp( in, continuousFunction(asAbstractContinuousDomain()) );           Finley_Assemble_CopyElementData(mesh->Points,&_target,&_in);
1001                Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(nodeTemp.getDataC()),&(target.getDataC()));        } else {
1002               break;           throw FinleyAdapterException("Error - No interpolation with data on points possible.");
1003             }        }
1004  #endif        break;
1005             default:     case(ContactElementsZero):
1006               stringstream temp;     case(ContactElementsOne):
1007               temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();        if (target.getFunctionSpace().getTypeCode()==ContactElementsZero || target.getFunctionSpace().getTypeCode()==ContactElementsOne) {
1008               throw FinleyAdapterException(temp.str());           Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
1009               break;        } else if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
1010          }           Finley_Assemble_AverageElementData(mesh->ContactElements,&_target,&_in);
1011          break;        } else {
1012       case(ReducedDegreesOfFreedom):           throw FinleyAdapterException("Error - No interpolation with data on contact elements possible.");
1013         switch(target.getFunctionSpace().getTypeCode()) {        }
1014            case(ReducedDegreesOfFreedom):        break;
1015               Finley_Assemble_CopyNodalData(mesh->Nodes,&(target.getDataC()),&(in.getDataC()));     case(ReducedContactElementsZero):
1016               break;     case(ReducedContactElementsOne):
1017            case(Elements):        if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
1018               Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&(in.getDataC()),&(target.getDataC()));           Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
1019               break;        } else {
1020            case(FaceElements):           throw FinleyAdapterException("Error - No interpolation with data on contact elements with reduced integration order possible.");
1021               Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&(in.getDataC()),&(target.getDataC()));        }
1022               break;        break;
1023            case(Points):     case(DegreesOfFreedom):      
1024               Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&(in.getDataC()),&(target.getDataC()));        switch(target.getFunctionSpace().getTypeCode()) {
1025               break;        case(ReducedDegreesOfFreedom):
1026            case(ContactElementsZero):        case(DegreesOfFreedom):
1027            case(ContactElementsOne):        Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1028               Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&(in.getDataC()),&(target.getDataC()));        break;
1029               break;    
1030            case(Nodes):        case(Nodes):
1031               throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to mesh nodes.");        case(ReducedNodes):
1032               break;        if (getMPISize()>1) {
1033            case(DegreesOfFreedom):           escript::Data temp=escript::Data(in);
1034               throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to degrees of freedom");           temp.expand();
1035               break;           escriptDataC _in2 = temp.getDataC();
1036            default:           Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1037               stringstream temp;        } else {
1038               temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();           Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1039               throw FinleyAdapterException(temp.str());        }
1040               break;        break;
1041         }        case(Elements):
1042         break;        case(ReducedElements):
1043       default:        if (getMPISize()>1) {
1044          stringstream temp;           escript::Data temp=escript::Data( in,  continuousFunction(asAbstractContinuousDomain()) );
1045          temp << "Error - Interpolation On Domain: Finley does not know anything about function space type %d" << in.getFunctionSpace().getTypeCode();           escriptDataC _in2 = temp.getDataC();
1046          throw FinleyAdapterException(temp.str());           Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1047          break;        } else {
1048    }           Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1049    checkFinleyError();        }
1050          break;
1051          case(FaceElements):
1052          case(ReducedFaceElements):
1053          if (getMPISize()>1) {
1054             escript::Data temp=escript::Data( in,  continuousFunction(asAbstractContinuousDomain()) );
1055             escriptDataC _in2 = temp.getDataC();
1056             Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1057      
1058          } else {
1059             Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1060          }
1061          break;
1062          case(Points):
1063          if (getMPISize()>1) {
1064             escript::Data temp=escript::Data( in,  continuousFunction(asAbstractContinuousDomain()) );
1065             escriptDataC _in2 = temp.getDataC();
1066          } else {
1067             Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1068          }
1069          break;
1070          case(ContactElementsZero):
1071          case(ContactElementsOne):
1072          case(ReducedContactElementsZero):
1073          case(ReducedContactElementsOne):
1074          if (getMPISize()>1) {
1075             escript::Data temp=escript::Data( in,  continuousFunction(asAbstractContinuousDomain()) );
1076             escriptDataC _in2 = temp.getDataC();
1077             Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1078          } else {
1079             Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1080          }
1081          break;
1082          default:
1083             stringstream temp;
1084             temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1085             throw FinleyAdapterException(temp.str());
1086             break;
1087          }
1088          break;
1089       case(ReducedDegreesOfFreedom):
1090          switch(target.getFunctionSpace().getTypeCode()) {
1091          case(Nodes):
1092          throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to mesh nodes.");
1093          break;
1094          case(ReducedNodes):
1095          if (getMPISize()>1) {
1096             escript::Data temp=escript::Data(in);
1097             temp.expand();
1098             escriptDataC _in2 = temp.getDataC();
1099             Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1100          } else {
1101             Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1102          }
1103          break;
1104          case(DegreesOfFreedom):
1105          throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to degrees of freedom");
1106          break;
1107          case(ReducedDegreesOfFreedom):
1108          Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1109          break;
1110          case(Elements):
1111          case(ReducedElements):
1112          if (getMPISize()>1) {
1113             escript::Data temp=escript::Data( in,  reducedContinuousFunction(asAbstractContinuousDomain()) );
1114             escriptDataC _in2 = temp.getDataC();
1115             Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1116          } else {
1117             Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1118          }
1119          break;
1120          case(FaceElements):
1121          case(ReducedFaceElements):
1122          if (getMPISize()>1) {
1123             escript::Data temp=escript::Data( in,  reducedContinuousFunction(asAbstractContinuousDomain()) );
1124             escriptDataC _in2 = temp.getDataC();
1125             Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1126          } else {
1127             Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1128          }
1129          break;
1130          case(Points):
1131          if (getMPISize()>1) {
1132             escript::Data temp=escript::Data( in,  reducedContinuousFunction(asAbstractContinuousDomain()) );
1133             escriptDataC _in2 = temp.getDataC();
1134             Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in2,&_target);
1135          } else {
1136             Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1137          }
1138          break;
1139          case(ContactElementsZero):
1140          case(ContactElementsOne):
1141          case(ReducedContactElementsZero):
1142          case(ReducedContactElementsOne):
1143          if (getMPISize()>1) {
1144             escript::Data temp=escript::Data( in,  reducedContinuousFunction(asAbstractContinuousDomain()) );
1145             escriptDataC _in2 = temp.getDataC();
1146             Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1147          } else {
1148             Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1149          }
1150          break;
1151          default:
1152             stringstream temp;
1153             temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1154             throw FinleyAdapterException(temp.str());
1155             break;
1156          }
1157          break;
1158       default:
1159          stringstream temp;
1160          temp << "Error - Interpolation On Domain: Finley does not know anything about function space type %d" << in.getFunctionSpace().getTypeCode();
1161          throw FinleyAdapterException(temp.str());
1162          break;
1163       }
1164       checkFinleyError();
1165  }  }
1166    
1167  //  //
# Line 505  void MeshAdapter::interpolateOnDomain(es Line 1169  void MeshAdapter::interpolateOnDomain(es
1169  //  //
1170  void MeshAdapter::setToX(escript::Data& arg) const  void MeshAdapter::setToX(escript::Data& arg) const
1171  {  {
1172    const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());     const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(*(arg.getFunctionSpace().getDomain()));
1173    if (argDomain!=*this)     if (argDomain!=*this)
1174       throw FinleyAdapterException("Error - Illegal domain of data point locations");        throw FinleyAdapterException("Error - Illegal domain of data point locations");
1175    Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
1176    // in case of values node coordinates we can do the job directly:     // in case of values node coordinates we can do the job directly:
1177    if (arg.getFunctionSpace().getTypeCode()==Nodes) {     if (arg.getFunctionSpace().getTypeCode()==Nodes) {
1178       Finley_Assemble_NodeCoordinates(mesh->Nodes,&(arg.getDataC()));        escriptDataC _arg=arg.getDataC();
1179    } else {        Finley_Assemble_NodeCoordinates(mesh->Nodes,&_arg);
1180       escript::Data tmp_data=Vector(0.0,continuousFunction(asAbstractContinuousDomain()),true);     } else {
1181       Finley_Assemble_NodeCoordinates(mesh->Nodes,&(tmp_data.getDataC()));        escript::Data tmp_data=Vector(0.0,continuousFunction(asAbstractContinuousDomain()),true);
1182       // this is then interpolated onto arg:        escriptDataC _tmp_data=tmp_data.getDataC();
1183       interpolateOnDomain(arg,tmp_data);        Finley_Assemble_NodeCoordinates(mesh->Nodes,&_tmp_data);
1184    }        // this is then interpolated onto arg:
1185    checkFinleyError();        interpolateOnDomain(arg,tmp_data);
1186       }
1187       checkFinleyError();
1188  }  }
1189    
1190  //  //
# Line 526  void MeshAdapter::setToX(escript::Data& Line 1192  void MeshAdapter::setToX(escript::Data&
1192  //  //
1193  void MeshAdapter::setToNormal(escript::Data& normal) const  void MeshAdapter::setToNormal(escript::Data& normal) const
1194  {  {
1195    const MeshAdapter& normalDomain=dynamic_cast<const MeshAdapter&>(normal.getFunctionSpace().getDomain());  /*   const MeshAdapter& normalDomain=dynamic_cast<const MeshAdapter&>(normal.getFunctionSpace().getDomain());*/
1196    if (normalDomain!=*this)     const MeshAdapter& normalDomain=dynamic_cast<const MeshAdapter&>(*(normal.getFunctionSpace().getDomain()));
1197       throw FinleyAdapterException("Error - Illegal domain of normal locations");     if (normalDomain!=*this)
1198    Finley_Mesh* mesh=m_finleyMesh.get();        throw FinleyAdapterException("Error - Illegal domain of normal locations");
1199    switch(normal.getFunctionSpace().getTypeCode()) {     Finley_Mesh* mesh=m_finleyMesh.get();
1200      case(Nodes):     escriptDataC _normal=normal.getDataC();
1201        throw FinleyAdapterException("Error - Finley does not support surface normal vectors for nodes");     switch(normal.getFunctionSpace().getTypeCode()) {
1202        break;     case(Nodes):
1203      case(Elements):     throw FinleyAdapterException("Error - Finley does not support surface normal vectors for nodes");
1204        throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements");     break;
1205        break;     case(ReducedNodes):
1206      case (FaceElements):     throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced nodes");
1207        Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&(normal.getDataC()));     break;
1208        break;     case(Elements):
1209      case(Points):     throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements");
1210        throw FinleyAdapterException("Error - Finley does not support surface normal vectors for point elements");     break;
1211        break;     case(ReducedElements):
1212      case (ContactElementsOne):     throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements with reduced integration order");
1213      case (ContactElementsZero):     break;
1214        Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&(normal.getDataC()));     case (FaceElements):
1215        break;     Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&_normal);
1216      case(DegreesOfFreedom):     break;
1217        throw FinleyAdapterException("Error - Finley does not support surface normal vectors for degrees of freedom.");     case (ReducedFaceElements):
1218        break;     Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&_normal);
1219      case(ReducedDegreesOfFreedom):     break;
1220        throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced degrees of freedom.");     case(Points):
1221        break;     throw FinleyAdapterException("Error - Finley does not support surface normal vectors for point elements");
1222      default:     break;
1223       case (ContactElementsOne):
1224       case (ContactElementsZero):
1225       Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&_normal);
1226       break;
1227       case (ReducedContactElementsOne):
1228       case (ReducedContactElementsZero):
1229       Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&_normal);
1230       break;
1231       case(DegreesOfFreedom):
1232       throw FinleyAdapterException("Error - Finley does not support surface normal vectors for degrees of freedom.");
1233       break;
1234       case(ReducedDegreesOfFreedom):
1235       throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced degrees of freedom.");
1236       break;
1237       default:
1238        stringstream temp;        stringstream temp;
1239        temp << "Error - Normal Vectors: Finley does not know anything about function space type " << normal.getFunctionSpace().getTypeCode();        temp << "Error - Normal Vectors: Finley does not know anything about function space type " << normal.getFunctionSpace().getTypeCode();
1240        throw FinleyAdapterException(temp.str());        throw FinleyAdapterException(temp.str());
1241        break;        break;
1242    }     }
1243    checkFinleyError();     checkFinleyError();
1244  }  }
1245    
1246  //  //
# Line 567  void MeshAdapter::setToNormal(escript::D Line 1248  void MeshAdapter::setToNormal(escript::D
1248  //  //
1249  void MeshAdapter::interpolateACross(escript::Data& target,const escript::Data& source) const  void MeshAdapter::interpolateACross(escript::Data& target,const escript::Data& source) const
1250  {  {
1251    const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain());     const_Domain_ptr targetDomain_p=target.getFunctionSpace().getDomain();
1252    if (targetDomain!=*this)     const MeshAdapter* targetDomain=dynamic_cast<const MeshAdapter*>(targetDomain_p.get());
1253       throw FinleyAdapterException("Error - Illegal domain of interpolation target");     if (targetDomain!=this)
1254          throw FinleyAdapterException("Error - Illegal domain of interpolation target");
1255    
1256    throw FinleyAdapterException("Error - Finley does not allow interpolation across domains yet.");     throw FinleyAdapterException("Error - Finley does not allow interpolation across domains yet.");
1257  }  }
1258    
1259  //  //
# Line 579  void MeshAdapter::interpolateACross(escr Line 1261  void MeshAdapter::interpolateACross(escr
1261  //  //
1262  void MeshAdapter::setToIntegrals(std::vector<double>& integrals,const escript::Data& arg) const  void MeshAdapter::setToIntegrals(std::vector<double>& integrals,const escript::Data& arg) const
1263  {  {
1264    const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());     const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(*(arg.getFunctionSpace().getDomain()));
1265    if (argDomain!=*this)     if (argDomain!=*this)
1266       throw FinleyAdapterException("Error - Illegal domain of integration kernel");        throw FinleyAdapterException("Error - Illegal domain of integration kernel");
1267    
1268    Finley_Mesh* mesh=m_finleyMesh.get();     double blocktimer_start = blocktimer_time();
1269    switch(arg.getFunctionSpace().getTypeCode()) {     Finley_Mesh* mesh=m_finleyMesh.get();
1270       case(Nodes):     escriptDataC _temp;
1271          throw FinleyAdapterException("Error - Integral of data on nodes is not supported.");     escript::Data temp;
1272          break;     escriptDataC _arg=arg.getDataC();
1273       case(Elements):     switch(arg.getFunctionSpace().getTypeCode()) {
1274          Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&(arg.getDataC()),&integrals[0]);     case(Nodes):
1275          break;     temp=escript::Data( arg, escript::function(asAbstractContinuousDomain()) );
1276       case(FaceElements):     _temp=temp.getDataC();
1277          Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&(arg.getDataC()),&integrals[0]);     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1278          break;     break;
1279       case(Points):     case(ReducedNodes):
1280          throw FinleyAdapterException("Error - Integral of data on points is not supported.");     temp=escript::Data( arg, escript::function(asAbstractContinuousDomain()) );
1281          break;     _temp=temp.getDataC();
1282       case(ContactElementsZero):     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1283          Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&(arg.getDataC()),&integrals[0]);     break;
1284          break;     case(Elements):
1285       case(ContactElementsOne):     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_arg,&integrals[0]);
1286          Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&(arg.getDataC()),&integrals[0]);     break;
1287          break;     case(ReducedElements):
1288       case(DegreesOfFreedom):     Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_arg,&integrals[0]);
1289          throw FinleyAdapterException("Error - Integral of data on degrees of freedom is not supported.");     break;
1290          break;     case(FaceElements):
1291       case(ReducedDegreesOfFreedom):     Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&_arg,&integrals[0]);
1292          throw FinleyAdapterException("Error - Integral of data on reduced degrees of freedom is not supported.");     break;
1293          break;     case(ReducedFaceElements):
1294       default:     Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&_arg,&integrals[0]);
1295          stringstream temp;     break;
1296          temp << "Error - Integrals: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();     case(Points):
1297          throw FinleyAdapterException(temp.str());     throw FinleyAdapterException("Error - Integral of data on points is not supported.");
1298          break;     break;
1299    }     case(ContactElementsZero):
1300    checkFinleyError();     Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1301       break;
1302       case(ReducedContactElementsZero):
1303       Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1304       break;
1305       case(ContactElementsOne):
1306       Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1307       break;
1308       case(ReducedContactElementsOne):
1309       Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1310       break;
1311       case(DegreesOfFreedom):
1312       temp=escript::Data( arg, escript::function(asAbstractContinuousDomain()) );
1313       _temp=temp.getDataC();
1314       Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1315       break;
1316       case(ReducedDegreesOfFreedom):
1317       temp=escript::Data( arg, escript::function(asAbstractContinuousDomain()) );
1318       _temp=temp.getDataC();
1319       Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1320       break;
1321       default:
1322          stringstream temp;
1323          temp << "Error - Integrals: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();
1324          throw FinleyAdapterException(temp.str());
1325          break;
1326       }
1327       checkFinleyError();
1328       blocktimer_increment("integrate()", blocktimer_start);
1329  }  }
1330    
1331  //  //
# Line 623  void MeshAdapter::setToIntegrals(std::ve Line 1333  void MeshAdapter::setToIntegrals(std::ve
1333  //  //
1334  void MeshAdapter::setToGradient(escript::Data& grad,const escript::Data& arg) const  void MeshAdapter::setToGradient(escript::Data& grad,const escript::Data& arg) const
1335  {  {
1336    const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());     const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(*(arg.getFunctionSpace().getDomain()));
1337    if (argDomain!=*this)     if (argDomain!=*this)
1338      throw FinleyAdapterException("Error - Illegal domain of gradient argument");        throw FinleyAdapterException("Error - Illegal domain of gradient argument");
1339    const MeshAdapter& gradDomain=dynamic_cast<const MeshAdapter&>(grad.getFunctionSpace().getDomain());     const MeshAdapter& gradDomain=dynamic_cast<const MeshAdapter&>(*(grad.getFunctionSpace().getDomain()));
1340    if (gradDomain!=*this)     if (gradDomain!=*this)
1341       throw FinleyAdapterException("Error - Illegal domain of gradient");        throw FinleyAdapterException("Error - Illegal domain of gradient");
1342    
1343    Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
1344    escriptDataC nodeDataC;     escriptDataC _grad=grad.getDataC();
1345  #ifdef PASO_MPI     escriptDataC nodeDataC;
1346    escript::Data nodeTemp( arg, continuousFunction(asAbstractContinuousDomain()) );     escript::Data temp;
1347    if( arg.getFunctionSpace().getTypeCode() != Nodes )     if (getMPISize()>1) {
1348    {        if( arg.getFunctionSpace().getTypeCode() == DegreesOfFreedom ) {
1349      Finley_Assemble_CopyNodalData(mesh->Nodes,&(nodeTemp.getDataC()),&(arg.getDataC()));           temp=escript::Data( arg,  continuousFunction(asAbstractContinuousDomain()) );
1350      nodeDataC = nodeTemp.getDataC();           nodeDataC = temp.getDataC();
1351    }        } else if( arg.getFunctionSpace().getTypeCode() == ReducedDegreesOfFreedom ) {
1352    else           temp=escript::Data( arg,  reducedContinuousFunction(asAbstractContinuousDomain()) );
1353      nodeDataC = arg.getDataC();           nodeDataC = temp.getDataC();
1354  #else        } else {
1355    nodeDataC = arg.getDataC();           nodeDataC = arg.getDataC();
1356  #endif        }
1357    switch(grad.getFunctionSpace().getTypeCode()) {     } else {
1358         case(Nodes):        nodeDataC = arg.getDataC();
1359            throw FinleyAdapterException("Error - Gradient at nodes is not supported.");     }
1360            break;     switch(grad.getFunctionSpace().getTypeCode()) {
1361         case(Elements):     case(Nodes):
1362            Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&(grad.getDataC()),&nodeDataC);     throw FinleyAdapterException("Error - Gradient at nodes is not supported.");
1363            break;     break;
1364         case(FaceElements):     case(ReducedNodes):
1365            Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&(grad.getDataC()),&nodeDataC);     throw FinleyAdapterException("Error - Gradient at reduced nodes is not supported.");
1366            break;     break;
1367         case(Points):     case(Elements):
1368            throw FinleyAdapterException("Error - Gradient at points is not supported.");     Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&_grad,&nodeDataC);
1369            break;     break;
1370         case(ContactElementsZero):     case(ReducedElements):
1371            Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&(grad.getDataC()),&nodeDataC);     Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&_grad,&nodeDataC);
1372            break;     break;
1373         case(ContactElementsOne):     case(FaceElements):
1374            Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&(grad.getDataC()),&nodeDataC);     Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&_grad,&nodeDataC);
1375            break;     break;
1376         case(DegreesOfFreedom):     case(ReducedFaceElements):
1377            throw FinleyAdapterException("Error - Gradient at degrees of freedom is not supported.");     Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&_grad,&nodeDataC);
1378            break;     break;
1379         case(ReducedDegreesOfFreedom):     case(Points):
1380            throw FinleyAdapterException("Error - Gradient at reduced degrees of freedom is not supported.");     throw FinleyAdapterException("Error - Gradient at points is not supported.");
1381            break;     break;
1382         default:     case(ContactElementsZero):
1383            stringstream temp;     Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1384            temp << "Error - Gradient: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();     break;
1385            throw FinleyAdapterException(temp.str());     case(ReducedContactElementsZero):
1386            break;     Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1387    }     break;
1388    checkFinleyError();     case(ContactElementsOne):
1389       Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1390       break;
1391       case(ReducedContactElementsOne):
1392       Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1393       break;
1394       case(DegreesOfFreedom):
1395       throw FinleyAdapterException("Error - Gradient at degrees of freedom is not supported.");
1396       break;
1397       case(ReducedDegreesOfFreedom):
1398       throw FinleyAdapterException("Error - Gradient at reduced degrees of freedom is not supported.");
1399       break;
1400       default:
1401          stringstream temp;
1402          temp << "Error - Gradient: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();
1403          throw FinleyAdapterException(temp.str());
1404          break;
1405       }
1406       checkFinleyError();
1407  }  }
1408    
1409  //  //
# Line 683  void MeshAdapter::setToGradient(escript: Line 1411  void MeshAdapter::setToGradient(escript:
1411  //  //
1412  void MeshAdapter::setToSize(escript::Data& size) const  void MeshAdapter::setToSize(escript::Data& size) const
1413  {  {
1414    Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
1415    escriptDataC tmp=size.getDataC();     escriptDataC tmp=size.getDataC();
1416    switch(size.getFunctionSpace().getTypeCode()) {     switch(size.getFunctionSpace().getTypeCode()) {
1417         case(Nodes):     case(Nodes):
1418            throw FinleyAdapterException("Error - Size of nodes is not supported.");     throw FinleyAdapterException("Error - Size of nodes is not supported.");
1419            break;     break;
1420         case(Elements):     case(ReducedNodes):
1421            Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);     throw FinleyAdapterException("Error - Size of reduced nodes is not supported.");
1422            break;     break;
1423         case(FaceElements):     case(Elements):
1424            Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);     Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);
1425            break;     break;
1426         case(Points):     case(ReducedElements):
1427            throw FinleyAdapterException("Error - Size of point elements is not supported.");     Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);
1428            break;     break;
1429         case(ContactElementsZero):     case(FaceElements):
1430         case(ContactElementsOne):     Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);
1431            Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);     break;
1432            break;     case(ReducedFaceElements):
1433         case(DegreesOfFreedom):     Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);
1434            throw FinleyAdapterException("Error - Size of degrees of freedom is not supported.");     break;
1435            break;     case(Points):
1436         case(ReducedDegreesOfFreedom):     throw FinleyAdapterException("Error - Size of point elements is not supported.");
1437            throw FinleyAdapterException("Error - Size of reduced degrees of freedom is not supported.");     break;
1438            break;     case(ContactElementsZero):
1439         default:     case(ContactElementsOne):
1440            stringstream temp;     Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);
1441            temp << "Error - Element size: Finley does not know anything about function space type " << size.getFunctionSpace().getTypeCode();     break;
1442            throw FinleyAdapterException(temp.str());     case(ReducedContactElementsZero):
1443            break;     case(ReducedContactElementsOne):
1444    }     Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);
1445    checkFinleyError();     break;
1446       case(DegreesOfFreedom):
1447       throw FinleyAdapterException("Error - Size of degrees of freedom is not supported.");
1448       break;
1449       case(ReducedDegreesOfFreedom):
1450       throw FinleyAdapterException("Error - Size of reduced degrees of freedom is not supported.");
1451       break;
1452       default:
1453          stringstream temp;
1454          temp << "Error - Element size: Finley does not know anything about function space type " << size.getFunctionSpace().getTypeCode();
1455          throw FinleyAdapterException(temp.str());
1456          break;
1457       }
1458       checkFinleyError();
1459  }  }
1460    
1461  // sets the location of nodes:  //
1462    // sets the location of nodes
1463    //
1464  void MeshAdapter::setNewX(const escript::Data& new_x)  void MeshAdapter::setNewX(const escript::Data& new_x)
1465  {  {
1466    Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
1467    escriptDataC tmp;     escriptDataC tmp;
1468    const MeshAdapter& newDomain=dynamic_cast<const MeshAdapter&>(new_x.getFunctionSpace().getDomain());     const MeshAdapter& newDomain=dynamic_cast<const MeshAdapter&>(*(new_x.getFunctionSpace().getDomain()));
1469    if (newDomain!=*this)     if (newDomain!=*this)
1470       throw FinleyAdapterException("Error - Illegal domain of new point locations");        throw FinleyAdapterException("Error - Illegal domain of new point locations");
1471    tmp = new_x.getDataC();     if ( new_x.getFunctionSpace() == continuousFunction(asAbstractContinuousDomain()) ) {
1472    Finley_Mesh_setCoordinates(mesh,&tmp);         tmp = new_x.getDataC();
1473    checkFinleyError();         Finley_Mesh_setCoordinates(mesh,&tmp);
1474       } else {
1475           escript::Data new_x_inter=escript::Data( new_x,  continuousFunction(asAbstractContinuousDomain()) );
1476           tmp = new_x_inter.getDataC();
1477           Finley_Mesh_setCoordinates(mesh,&tmp);
1478       }
1479       checkFinleyError();
1480  }  }
1481    
1482  // saves a data array in openDX format:  //
1483    // Helper for the save* methods. Extracts optional data variable names and the
1484    // corresponding pointers from python dictionary. Caller must free arrays.
1485    //
1486    void MeshAdapter::extractArgsFromDict(const boost::python::dict& arg, int& numData, char**& names, escriptDataC*& data, escriptDataC**& dataPtr) const
1487    {
1488       numData = boost::python::extract<int>(arg.attr("__len__")());
1489       /* win32 refactor */
1490       names = (numData>0) ? TMPMEMALLOC(numData, char*) : (char**)NULL;
1491       data = (numData>0) ? TMPMEMALLOC(numData,escriptDataC) : (escriptDataC*)NULL;
1492       dataPtr = (numData>0) ? TMPMEMALLOC(numData,escriptDataC*) : (escriptDataC**)NULL;
1493    
1494       boost::python::list keys=arg.keys();
1495       for (int i=0; i<numData; ++i) {
1496          std::string n=boost::python::extract<std::string>(keys[i]);
1497          escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]);
1498          if (dynamic_cast<const MeshAdapter&>(*(d.getFunctionSpace().getDomain())) !=*this)
1499             throw FinleyAdapterException("Error: Data must be defined on same Domain");
1500          data[i] = d.getDataC();
1501          dataPtr[i] = &(data[i]);
1502          names[i] = TMPMEMALLOC(n.length()+1, char);
1503          strcpy(names[i], n.c_str());
1504       }
1505    }
1506    
1507    //
1508    // saves mesh and optionally data arrays in openDX format
1509    //
1510  void MeshAdapter::saveDX(const std::string& filename,const boost::python::dict& arg) const  void MeshAdapter::saveDX(const std::string& filename,const boost::python::dict& arg) const
1511  {  {
1512      int MAX_namelength=256;     int num_data;
1513      const int num_data=boost::python::extract<int>(arg.attr("__len__")());     char **names;
1514    /* win32 refactor */     escriptDataC *data;
1515    char* *names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;     escriptDataC **ptr_data;
   for(int i=0;i<num_data;i++)  
   {  
     names[i] = (MAX_namelength>0) ? TMPMEMALLOC(MAX_namelength,char) : (char*)NULL;  
   }  
1516    
1517    char* *c_names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;     extractArgsFromDict(arg, num_data, names, data, ptr_data);
1518    escriptDataC *data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC) : (escriptDataC*)NULL;     Finley_Mesh_saveDX(filename.c_str(), m_finleyMesh.get(), num_data, names, ptr_data);
1519    escriptDataC* *ptr_data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC*) : (escriptDataC**)NULL;     checkFinleyError();
1520    
1521      boost::python::list keys=arg.keys();     /* win32 refactor */
1522      for (int i=0;i<num_data;++i) {     TMPMEMFREE(data);
1523           escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]);     TMPMEMFREE(ptr_data);
1524           if (dynamic_cast<const MeshAdapter&>(d.getFunctionSpace().getDomain()) !=*this)     for(int i=0; i<num_data; i++)
1525               throw FinleyAdapterException("Error  in saveDX: Data must be defined on same Domain");     {
1526           data[i]=d.getDataC();        TMPMEMFREE(names[i]);
1527           ptr_data[i]=&(data[i]);     }
1528           std::string n=boost::python::extract<std::string>(keys[i]);     TMPMEMFREE(names);
          c_names[i]=&(names[i][0]);  
          if (n.length()>MAX_namelength-1) {  
             strncpy(c_names[i],n.c_str(),MAX_namelength-1);  
             c_names[i][MAX_namelength-1]='\0';  
          } else {  
             strcpy(c_names[i],n.c_str());  
          }  
     }  
     Finley_Mesh_saveDX(filename.c_str(),m_finleyMesh.get(),num_data,c_names,ptr_data);  
     checkFinleyError();  
       
       /* win32 refactor */  
   TMPMEMFREE(c_names);  
   TMPMEMFREE(data);  
   TMPMEMFREE(ptr_data);  
   for(int i=0;i<num_data;i++)  
   {  
     TMPMEMFREE(names[i]);  
   }  
   TMPMEMFREE(names);  
1529    
1530      return;     return;
1531  }  }
1532    
1533  // saves a data array in openVTK format:  //
1534  void MeshAdapter::saveVTK(const std::string& filename,const boost::python::dict& arg) const  // saves mesh and optionally data arrays in VTK format
1535    //
1536    void MeshAdapter::saveVTK(const std::string& filename,const boost::python::dict& arg,  const std::string& metadata, const std::string& metadata_schema) const
1537  {  {
1538      int MAX_namelength=256;     int num_data;
1539      const int num_data=boost::python::extract<int>(arg.attr("__len__")());     char **names;
1540    /* win32 refactor */     escriptDataC *data;
1541    char* *names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;     escriptDataC **ptr_data;
   for(int i=0;i<num_data;i++)  
   {  
     names[i] = (MAX_namelength>0) ? TMPMEMALLOC(MAX_namelength,char) : (char*)NULL;  
   }  
1542    
1543    char* *c_names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;     extractArgsFromDict(arg, num_data, names, data, ptr_data);
1544    escriptDataC *data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC) : (escriptDataC*)NULL;     Finley_Mesh_saveVTK(filename.c_str(), m_finleyMesh.get(), num_data, names, ptr_data, metadata.c_str(), metadata_schema.c_str());
1545    escriptDataC* *ptr_data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC*) : (escriptDataC**)NULL;     checkFinleyError();
1546    
1547      boost::python::list keys=arg.keys();     /* win32 refactor */
1548      for (int i=0;i<num_data;++i) {     TMPMEMFREE(data);
1549           escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]);     TMPMEMFREE(ptr_data);
1550           if (dynamic_cast<const MeshAdapter&>(d.getFunctionSpace().getDomain()) !=*this)     for(int i=0; i<num_data; i++)
1551               throw FinleyAdapterException("Error  in saveVTK: Data must be defined on same Domain");     {
1552           data[i]=d.getDataC();        TMPMEMFREE(names[i]);
1553           ptr_data[i]=&(data[i]);     }
1554           std::string n=boost::python::extract<std::string>(keys[i]);     TMPMEMFREE(names);
1555           c_names[i]=&(names[i][0]);  }
1556           if (n.length()>MAX_namelength-1) {  
1557              strncpy(c_names[i],n.c_str(),MAX_namelength-1);  bool MeshAdapter::ownSample(int fs_code, index_t id) const
1558              c_names[i][MAX_namelength-1]='\0';  {
1559           } else {  #ifdef PASO_MPI
1560              strcpy(c_names[i],n.c_str());      index_t myFirstNode=0, myLastNode=0, k=0;
1561           }      index_t* globalNodeIndex=0;
1562        Finley_Mesh* mesh_p=m_finleyMesh.get();
1563        if (fs_code == FINLEY_REDUCED_NODES)
1564        {
1565        myFirstNode = Finley_NodeFile_getFirstReducedNode(mesh_p->Nodes);
1566        myLastNode = Finley_NodeFile_getLastReducedNode(mesh_p->Nodes);
1567        globalNodeIndex = Finley_NodeFile_borrowGlobalReducedNodesIndex(mesh_p->Nodes);
1568      }      }
1569  #ifndef PASO_MPI          else
1570      Finley_Mesh_saveVTK(filename.c_str(),m_finleyMesh.get(),num_data,c_names,ptr_data);      {
1571  #else      myFirstNode = Finley_NodeFile_getFirstNode(mesh_p->Nodes);
1572      Finley_Mesh_saveVTK_MPIO(filename.c_str(),m_finleyMesh.get(),num_data,c_names,ptr_data);      myLastNode = Finley_NodeFile_getLastNode(mesh_p->Nodes);
1573        globalNodeIndex = Finley_NodeFile_borrowGlobalNodesIndex(mesh_p->Nodes);
1574        }
1575        k=globalNodeIndex[id];
1576        return static_cast<bool>( (myFirstNode <= k) && (k < myLastNode) );
1577  #endif  #endif
1578        return true;
1579    }
1580    
 checkFinleyError();  
   /* win32 refactor */  
   TMPMEMFREE(c_names);  
   TMPMEMFREE(data);  
   TMPMEMFREE(ptr_data);  
   for(int i=0;i<num_data;i++)  
   {  
     TMPMEMFREE(names[i]);  
   }  
   TMPMEMFREE(names);  
1581    
1582      return;  
1583  }  //
1584                                                                                                                                                                            // creates a SystemMatrixAdapter stiffness matrix an initializes it with zeros
1585                                                                                                                                                                            //
 // creates a SystemMatrixAdapter stiffness matrix an initializes it with zeros:  
1586  SystemMatrixAdapter MeshAdapter::newSystemMatrix(  SystemMatrixAdapter MeshAdapter::newSystemMatrix(
1587                        const int row_blocksize,                                                   const int row_blocksize,
1588                        const escript::FunctionSpace& row_functionspace,                                                   const escript::FunctionSpace& row_functionspace,
1589                        const int column_blocksize,                                                   const int column_blocksize,
1590                        const escript::FunctionSpace& column_functionspace,                                                   const escript::FunctionSpace& column_functionspace,
1591                        const int type) const                                                   const int type) const
1592  {  {
1593      int reduceRowOrder=0;     int reduceRowOrder=0;
1594      int reduceColOrder=0;     int reduceColOrder=0;
1595      // is the domain right?     // is the domain right?
1596      const MeshAdapter& row_domain=dynamic_cast<const MeshAdapter&>(row_functionspace.getDomain());     const MeshAdapter& row_domain=dynamic_cast<const MeshAdapter&>(*(row_functionspace.getDomain()));
1597      if (row_domain!=*this)     if (row_domain!=*this)
1598            throw FinleyAdapterException("Error - domain of row function space does not match the domain of matrix generator.");        throw FinleyAdapterException("Error - domain of row function space does not match the domain of matrix generator.");
1599      const MeshAdapter& col_domain=dynamic_cast<const MeshAdapter&>(column_functionspace.getDomain());     const MeshAdapter& col_domain=dynamic_cast<const MeshAdapter&>(*(column_functionspace.getDomain()));
1600      if (col_domain!=*this)     if (col_domain!=*this)
1601            throw FinleyAdapterException("Error - domain of columnn function space does not match the domain of matrix generator.");        throw FinleyAdapterException("Error - domain of columnn function space does not match the domain of matrix generator.");
1602      // is the function space type right     // is the function space type right
1603      if (row_functionspace.getTypeCode()==DegreesOfFreedom) {     if (row_functionspace.getTypeCode()==DegreesOfFreedom) {
1604          reduceRowOrder=0;        reduceRowOrder=0;
1605      } else if (row_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {     } else if (row_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1606          reduceRowOrder=1;        reduceRowOrder=1;
1607      } else {     } else {
1608          throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");        throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");
1609      }     }
1610      if (column_functionspace.getTypeCode()==DegreesOfFreedom) {     if (column_functionspace.getTypeCode()==DegreesOfFreedom) {
1611          reduceColOrder=0;        reduceColOrder=0;
1612      } else if (column_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {     } else if (column_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1613          reduceColOrder=1;        reduceColOrder=1;
1614      } else {     } else {
1615          throw FinleyAdapterException("Error - illegal function space type for system matrix columns.");        throw FinleyAdapterException("Error - illegal function space type for system matrix columns.");
1616      }     }
1617      // generate matrix:     // generate matrix:
1618        
1619      Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceRowOrder,reduceColOrder);     Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceRowOrder,reduceColOrder);
1620      checkFinleyError();     checkFinleyError();
1621      Paso_SystemMatrix* fsystemMatrix=Paso_SystemMatrix_alloc(type,fsystemMatrixPattern,row_blocksize,column_blocksize);     Paso_SystemMatrix* fsystemMatrix;
1622      checkPasoError();     int trilinos = 0;
1623      Paso_SystemMatrixPattern_dealloc(fsystemMatrixPattern);     if (trilinos) {
1624      return SystemMatrixAdapter(fsystemMatrix,row_blocksize,row_functionspace,column_blocksize,column_functionspace);  #ifdef TRILINOS
1625          /* Allocation Epetra_VrbMatrix here */
1626    #endif
1627       }
1628       else {
1629          fsystemMatrix=Paso_SystemMatrix_alloc(type,fsystemMatrixPattern,row_blocksize,column_blocksize,FALSE);
1630       }
1631       checkPasoError();
1632       Paso_SystemMatrixPattern_free(fsystemMatrixPattern);
1633       return SystemMatrixAdapter(fsystemMatrix,row_blocksize,row_functionspace,column_blocksize,column_functionspace);
1634    }
1635    
1636    //
1637    // creates a TransportProblemAdapter
1638    //
1639    TransportProblemAdapter MeshAdapter::newTransportProblem(
1640                                                             const double theta,
1641                                                             const int blocksize,
1642                                                             const escript::FunctionSpace& functionspace,
1643                                                             const int type) const
1644    {
1645       int reduceOrder=0;
1646       // is the domain right?
1647       const MeshAdapter& domain=dynamic_cast<const MeshAdapter&>(*(functionspace.getDomain()));
1648       if (domain!=*this)
1649          throw FinleyAdapterException("Error - domain of function space does not match the domain of transport problem generator.");
1650       // is the function space type right
1651       if (functionspace.getTypeCode()==DegreesOfFreedom) {
1652          reduceOrder=0;
1653       } else if (functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1654          reduceOrder=1;
1655       } else {
1656          throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");
1657       }
1658       // generate matrix:
1659    
1660       Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceOrder,reduceOrder);
1661       checkFinleyError();
1662       Paso_FCTransportProblem* transportProblem;
1663       transportProblem=Paso_FCTransportProblem_alloc(theta,fsystemMatrixPattern,blocksize);
1664       checkPasoError();
1665       Paso_SystemMatrixPattern_free(fsystemMatrixPattern);
1666       return TransportProblemAdapter(transportProblem,theta,blocksize,functionspace);
1667  }  }
1668    
1669  //  //
# Line 882  SystemMatrixAdapter MeshAdapter::newSyst Line 1675  SystemMatrixAdapter MeshAdapter::newSyst
1675  // returns true if data at the atom_type is considered as being cell centered:  // returns true if data at the atom_type is considered as being cell centered:
1676  bool MeshAdapter::isCellOriented(int functionSpaceCode) const  bool MeshAdapter::isCellOriented(int functionSpaceCode) const
1677  {  {
1678    switch(functionSpaceCode) {     switch(functionSpaceCode) {
1679         case(Nodes):     case(Nodes):
1680         case(DegreesOfFreedom):     case(DegreesOfFreedom):
1681         case(ReducedDegreesOfFreedom):     case(ReducedDegreesOfFreedom):
1682            return false;     return false;
1683            break;     break;
1684         case(Elements):     case(Elements):
1685         case(FaceElements):     case(FaceElements):
1686         case(Points):     case(Points):
1687         case(ContactElementsZero):     case(ContactElementsZero):
1688         case(ContactElementsOne):     case(ContactElementsOne):
1689            return true;     case(ReducedElements):
1690            break;     case(ReducedFaceElements):
1691         default:     case(ReducedContactElementsZero):
1692            stringstream temp;     case(ReducedContactElementsOne):
1693            temp << "Error - Cell: Finley does not know anything about function space type " << functionSpaceCode;     return true;
1694            throw FinleyAdapterException(temp.str());     break;
1695            break;     default:
1696    }        stringstream temp;
1697    checkFinleyError();        temp << "Error - Cell: Finley does not know anything about function space type " << functionSpaceCode;
1698    return false;        throw FinleyAdapterException(temp.str());
1699          break;
1700       }
1701       checkFinleyError();
1702       return false;
1703    }
1704    
1705    bool
1706    MeshAdapter::commonFunctionSpace(const std::vector<int>& fs, int& resultcode) const
1707    {
1708       /* The idea is to use equivalence classes. [Types which can be interpolated back and forth]
1709        class 1: DOF <-> Nodes
1710        class 2: ReducedDOF <-> ReducedNodes
1711        class 3: Points
1712        class 4: Elements
1713        class 5: ReducedElements
1714        class 6: FaceElements
1715        class 7: ReducedFaceElements
1716        class 8: ContactElementZero <-> ContactElementOne
1717        class 9: ReducedContactElementZero <-> ReducedContactElementOne
1718    
1719       There is also a set of lines. Interpolation is possible down a line but not between lines.
1720       class 1 and 2 belong to all lines so aren't considered.
1721        line 0: class 3
1722        line 1: class 4,5
1723        line 2: class 6,7
1724        line 3: class 8,9
1725    
1726       For classes with multiple members (eg class 2) we have vars to record if there is at least one instance.
1727       eg hasnodes is true if we have at least one instance of Nodes.
1728       */
1729        if (fs.size()==0)
1730        {
1731        return false;
1732        }
1733        std::vector<int> hasclass(10);
1734        std::vector<int> hasline(4);    
1735        bool hasnodes=false;
1736        bool hasrednodes=false;
1737        bool hascez=false;
1738        bool hasrcez=false;
1739        for (int i=0;i<fs.size();++i)
1740        {
1741        switch(fs[i])
1742        {
1743        case(Nodes):   hasnodes=true;   // no break is deliberate
1744        case(DegreesOfFreedom):
1745            hasclass[1]=1;
1746            break;
1747        case(ReducedNodes):    hasrednodes=true;    // no break is deliberate
1748        case(ReducedDegreesOfFreedom):
1749            hasclass[2]=1;
1750            break;
1751        case(Points):
1752            hasline[0]=1;
1753            hasclass[3]=1;
1754            break;
1755        case(Elements):
1756            hasclass[4]=1;
1757            hasline[1]=1;
1758            break;
1759        case(ReducedElements):
1760            hasclass[5]=1;
1761            hasline[1]=1;
1762            break;
1763        case(FaceElements):
1764            hasclass[6]=1;
1765            hasline[2]=1;
1766            break;
1767        case(ReducedFaceElements):
1768            hasclass[7]=1;
1769            hasline[2]=1;
1770            break;
1771        case(ContactElementsZero):  hascez=true;    // no break is deliberate
1772        case(ContactElementsOne):
1773            hasclass[8]=1;
1774            hasline[3]=1;
1775            break;
1776        case(ReducedContactElementsZero):   hasrcez=true;   // no break is deliberate
1777        case(ReducedContactElementsOne):
1778            hasclass[9]=1;
1779            hasline[3]=1;
1780            break;
1781        default:
1782            return false;
1783        }
1784        }
1785        int totlines=hasline[0]+hasline[1]+hasline[2]+hasline[3];
1786        // fail if we have more than one leaf group
1787    
1788        if (totlines>1)
1789        {
1790        return false;   // there are at least two branches we can't interpolate between
1791        }
1792        else if (totlines==1)
1793        {
1794        if (hasline[0]==1)      // we have points
1795        {
1796            resultcode=Points;
1797        }
1798        else if (hasline[1]==1)
1799        {
1800            if (hasclass[5]==1)
1801            {
1802            resultcode=ReducedElements;
1803            }
1804            else
1805            {
1806            resultcode=Elements;
1807            }
1808        }
1809        else if (hasline[2]==1)
1810        {
1811            if (hasclass[7]==1)
1812            {
1813            resultcode=ReducedFaceElements;
1814            }
1815            else
1816            {
1817            resultcode=FaceElements;
1818            }
1819        }
1820        else    // so we must be in line3
1821        {
1822            if (hasclass[9]==1)
1823            {
1824            // need something from class 9
1825            resultcode=(hasrcez?ReducedContactElementsZero:ReducedContactElementsOne);
1826            }
1827            else
1828            {
1829            // something from class 8
1830            resultcode=(hascez?ContactElementsZero:ContactElementsOne);
1831            }
1832        }
1833        }
1834        else    // totlines==0
1835        {
1836        if (hasclass[2]==1)
1837        {
1838            // something from class 2
1839            resultcode=(hasrednodes?ReducedNodes:ReducedDegreesOfFreedom);
1840        }
1841        else
1842        {   // something from class 1
1843            resultcode=(hasnodes?Nodes:DegreesOfFreedom);
1844        }
1845        }
1846        return true;
1847  }  }
1848    
1849  bool MeshAdapter::probeInterpolationOnDomain(int functionSpaceType_source,int functionSpaceType_target) const  bool MeshAdapter::probeInterpolationOnDomain(int functionSpaceType_source,int functionSpaceType_target) const
1850  {  {
1851    switch(functionSpaceType_source) {     switch(functionSpaceType_source) {
1852       case(Nodes):     case(Nodes):
1853          switch(functionSpaceType_target) {      switch(functionSpaceType_target) {
1854             case(Nodes):      case(Nodes):
1855             case(ReducedDegreesOfFreedom):      case(ReducedNodes):
1856             case(DegreesOfFreedom):      case(ReducedDegreesOfFreedom):
1857             case(Elements):      case(DegreesOfFreedom):
1858             case(FaceElements):      case(Elements):
1859             case(Points):      case(ReducedElements):
1860             case(ContactElementsZero):      case(FaceElements):
1861             case(ContactElementsOne):      case(ReducedFaceElements):
1862                 return true;      case(Points):
1863             default:      case(ContactElementsZero):
1864                 stringstream temp;      case(ReducedContactElementsZero):
1865                 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;      case(ContactElementsOne):
1866                 throw FinleyAdapterException(temp.str());      case(ReducedContactElementsOne):
1867          }      return true;
1868          break;      default:
1869       case(Elements):            stringstream temp;
1870          if (functionSpaceType_target==Elements) {            temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1871             return true;            throw FinleyAdapterException(temp.str());
1872          } else {     }
1873             return false;     break;
1874          }     case(ReducedNodes):
1875       case(FaceElements):      switch(functionSpaceType_target) {
1876          if (functionSpaceType_target==FaceElements) {      case(ReducedNodes):
1877             return true;      case(ReducedDegreesOfFreedom):
1878          } else {      case(Elements):
1879             return false;      case(ReducedElements):
1880          }      case(FaceElements):
1881       case(Points):      case(ReducedFaceElements):
1882          if (functionSpaceType_target==Points) {      case(Points):
1883             return true;      case(ContactElementsZero):
1884          } else {      case(ReducedContactElementsZero):
1885             return false;      case(ContactElementsOne):
1886          }      case(ReducedContactElementsOne):
1887       case(ContactElementsZero):      return true;
1888       case(ContactElementsOne):      case(Nodes):
1889          if (functionSpaceType_target==ContactElementsZero || functionSpaceType_target==ContactElementsOne) {      case(DegreesOfFreedom):
1890             return true;      return false;
1891        default:
1892            stringstream temp;
1893            temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1894            throw FinleyAdapterException(temp.str());
1895       }
1896       break;
1897       case(Elements):
1898        if (functionSpaceType_target==Elements) {
1899          return true;
1900        } else if (functionSpaceType_target==ReducedElements) {
1901          return true;
1902          } else {          } else {
1903             return false;            return false;
         }  
      case(DegreesOfFreedom):  
         switch(functionSpaceType_target) {  
            case(ReducedDegreesOfFreedom):  
            case(DegreesOfFreedom):  
            case(Nodes):  
            case(Elements):  
            case(FaceElements):  
            case(Points):  
            case(ContactElementsZero):  
            case(ContactElementsOne):  
               return true;  
            default:  
              stringstream temp;  
              temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;  
              throw FinleyAdapterException(temp.str());  
1904          }          }
1905          break;     case(ReducedElements):
1906       case(ReducedDegreesOfFreedom):      if (functionSpaceType_target==ReducedElements) {
1907         switch(functionSpaceType_target) {        return true;
1908            case(ReducedDegreesOfFreedom):      } else {
1909            case(Elements):            return false;
1910            case(FaceElements):      }
1911            case(Points):     case(FaceElements):
1912            case(ContactElementsZero):      if (functionSpaceType_target==FaceElements) {
1913            case(ContactElementsOne):              return true;
1914                return true;      } else if (functionSpaceType_target==ReducedFaceElements) {
1915            case(Nodes):              return true;
1916            case(DegreesOfFreedom):      } else {
1917               return false;              return false;
1918            default:      }
1919               stringstream temp;     case(ReducedFaceElements):
1920               temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;      if (functionSpaceType_target==ReducedFaceElements) {
1921               throw FinleyAdapterException(temp.str());              return true;
1922         }      } else {
1923         break;          return false;
1924       default:      }
1925          stringstream temp;     case(Points):
1926          temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_source;      if (functionSpaceType_target==Points) {
1927          throw FinleyAdapterException(temp.str());              return true;
1928          break;      } else {
1929    }              return false;
1930    checkFinleyError();      }
1931    return false;     case(ContactElementsZero):
1932       case(ContactElementsOne):
1933        if (functionSpaceType_target==ContactElementsZero || functionSpaceType_target==ContactElementsOne) {
1934                return true;
1935        } else if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1936                return true;
1937        } else {
1938                return false;
1939        }
1940       case(ReducedContactElementsZero):
1941       case(ReducedContactElementsOne):
1942        if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1943                return true;
1944        } else {
1945                return false;
1946        }
1947       case(DegreesOfFreedom):
1948        switch(functionSpaceType_target) {
1949        case(ReducedDegreesOfFreedom):
1950        case(DegreesOfFreedom):
1951        case(Nodes):
1952        case(ReducedNodes):
1953        case(Elements):
1954        case(ReducedElements):
1955        case(Points):
1956        case(FaceElements):
1957        case(ReducedFaceElements):
1958        case(ContactElementsZero):
1959        case(ReducedContactElementsZero):
1960        case(ContactElementsOne):
1961        case(ReducedContactElementsOne):
1962        return true;
1963        default:
1964            stringstream temp;
1965            temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1966            throw FinleyAdapterException(temp.str());
1967        }
1968        break;
1969       case(ReducedDegreesOfFreedom):
1970       switch(functionSpaceType_target) {
1971        case(ReducedDegreesOfFreedom):
1972        case(ReducedNodes):
1973        case(Elements):
1974        case(ReducedElements):
1975        case(FaceElements):
1976        case(ReducedFaceElements):
1977        case(Points):
1978        case(ContactElementsZero):
1979        case(ReducedContactElementsZero):
1980        case(ContactElementsOne):
1981        case(ReducedContactElementsOne):
1982        return true;
1983        case(Nodes):
1984        case(DegreesOfFreedom):
1985        return false;
1986        default:
1987            stringstream temp;
1988            temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1989            throw FinleyAdapterException(temp.str());
1990        }
1991        break;
1992       default:
1993          stringstream temp;
1994          temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_source;
1995          throw FinleyAdapterException(temp.str());
1996          break;
1997       }
1998       checkFinleyError();
1999       return false;
2000  }  }
2001    
2002  bool MeshAdapter::probeInterpolationACross(int functionSpaceType_source,const AbstractDomain& targetDomain, int functionSpaceType_target) const  bool MeshAdapter::probeInterpolationACross(int functionSpaceType_source,const AbstractDomain& targetDomain, int functionSpaceType_target) const
2003  {  {
2004      return false;     return false;
2005  }  }
2006    
2007  bool MeshAdapter::operator==(const AbstractDomain& other) const  bool MeshAdapter::operator==(const AbstractDomain& other) const
2008  {  {
2009    const MeshAdapter* temp=dynamic_cast<const MeshAdapter*>(&other);     const MeshAdapter* temp=dynamic_cast<const MeshAdapter*>(&other);
2010    if (temp!=0) {     if (temp!=0) {
2011      return (m_finleyMesh==temp->m_finleyMesh);        return (m_finleyMesh==temp->m_finleyMesh);
2012    } else {     } else {
2013      return false;        return false;
2014    }     }
2015  }  }
2016    
2017  bool MeshAdapter::operator!=(const AbstractDomain& other) const  bool MeshAdapter::operator!=(const AbstractDomain& other) const
2018  {  {
2019    return !(operator==(other));     return !(operator==(other));
2020  }  }
2021    
2022  int MeshAdapter::getSystemMatrixTypeId(const int solver, const int package, const bool symmetry) const  int MeshAdapter::getSystemMatrixTypeId(const int solver, const int preconditioner, const int package, const bool symmetry) const
2023    {
2024       Finley_Mesh* mesh=m_finleyMesh.get();
2025       int out=Paso_SystemMatrix_getSystemMatrixTypeId(SystemMatrixAdapter::mapOptionToPaso(solver),SystemMatrixAdapter::mapOptionToPaso(preconditioner), SystemMatrixAdapter::mapOptionToPaso(package),symmetry?1:0, mesh->MPIInfo);
2026       checkPasoError();
2027       return out;
2028    }
2029    int MeshAdapter::getTransportTypeId(const int solver, const int preconditioner, const int package, const bool symmetry) const
2030  {  {
2031     int out=Paso_SystemMatrix_getSystemMatrixTypeId(SystemMatrixAdapter::mapOptionToPaso(solver),SystemMatrixAdapter::mapOptionToPaso(package),symmetry?1:0);     Finley_Mesh* mesh=m_finleyMesh.get();
2032       int out=Paso_FCTransportProblem_getTypeId(SystemMatrixAdapter::mapOptionToPaso(solver),SystemMatrixAdapter::mapOptionToPaso(preconditioner), SystemMatrixAdapter::mapOptionToPaso(package),symmetry?1:0, mesh->MPIInfo);
2033     checkPasoError();     checkPasoError();
2034     return out;     return out;
2035  }  }
2036    
2037  escript::Data MeshAdapter::getX() const  escript::Data MeshAdapter::getX() const
2038  {  {
2039    return continuousFunction(asAbstractContinuousDomain()).getX();     return continuousFunction(asAbstractContinuousDomain()).getX();
2040  }  }
2041    
2042  escript::Data MeshAdapter::getNormal() const  escript::Data MeshAdapter::getNormal() const
2043  {  {
2044    return functionOnBoundary(asAbstractContinuousDomain()).getNormal();     return functionOnBoundary(asAbstractContinuousDomain()).getNormal();
2045  }  }
2046    
2047  escript::Data MeshAdapter::getSize() const  escript::Data MeshAdapter::getSize() const
2048  {  {
2049    return function(asAbstractContinuousDomain()).getSize();     return escript::function(asAbstractContinuousDomain()).getSize();
2050  }  }
2051    
2052  int MeshAdapter::getTagFromSampleNo(int functionSpaceType, int sampleNo) const  const int* MeshAdapter::borrowSampleReferenceIDs(int functionSpaceType) const
2053  {  {
2054    int out=0;     int *out = NULL;
2055    Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
2056    switch (functionSpaceType) {     switch (functionSpaceType) {
2057    case(Nodes):     case(Nodes):
2058      out=mesh->Nodes->Tag[sampleNo];     out=mesh->Nodes->Id;
2059      break;     break;
2060    case(Elements):     case(ReducedNodes):
2061      out=mesh->Elements->Tag[sampleNo];     out=mesh->Nodes->reducedNodesId;
2062      break;     break;
2063    case(FaceElements):     case(Elements):
2064      out=mesh->FaceElements->Tag[sampleNo];     out=mesh->Elements->Id;
2065      break;     break;
2066    case(Points):     case(ReducedElements):
2067      out=mesh->Points->Tag[sampleNo];     out=mesh->Elements->Id;
2068      break;     break;
2069    case(ContactElementsZero):     case(FaceElements):
2070      out=mesh->ContactElements->Tag[sampleNo];     out=mesh->FaceElements->Id;
2071      break;     break;
2072    case(ContactElementsOne):     case(ReducedFaceElements):
2073      out=mesh->ContactElements->Tag[sampleNo];     out=mesh->FaceElements->Id;
2074      break;     break;
2075    case(DegreesOfFreedom):     case(Points):
2076      break;     out=mesh->Points->Id;
2077    case(ReducedDegreesOfFreedom):     break;
2078      break;     case(ContactElementsZero):
2079    default:     out=mesh->ContactElements->Id;
2080      stringstream temp;     break;
2081      temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();     case(ReducedContactElementsZero):
2082      throw FinleyAdapterException(temp.str());     out=mesh->ContactElements->Id;
2083      break;     break;
2084    }     case(ContactElementsOne):
2085    return out;     out=mesh->ContactElements->Id;
2086       break;
2087       case(ReducedContactElementsOne):
2088       out=mesh->ContactElements->Id;
2089       break;
2090       case(DegreesOfFreedom):
2091       out=mesh->Nodes->degreesOfFreedomId;
2092       break;
2093       case(ReducedDegreesOfFreedom):
2094       out=mesh->Nodes->reducedDegreesOfFreedomId;
2095       break;
2096       default:
2097          stringstream temp;
2098          temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();
2099          throw FinleyAdapterException(temp.str());
2100          break;
2101       }
2102       return out;
2103  }  }
2104  int* MeshAdapter::borrowSampleReferenceIDs(int functionSpaceType) const  int MeshAdapter::getTagFromSampleNo(int functionSpaceType, int sampleNo) const
2105  {  {
2106    int *out=0,i;     int out=0;
2107    Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
2108    switch (functionSpaceType) {     switch (functionSpaceType) {
2109    case(Nodes):     case(Nodes):
2110      if (mesh->Nodes!=NULL) {     out=mesh->Nodes->Tag[sampleNo];
2111        out=mesh->Nodes->Id;     break;
2112       case(ReducedNodes):
2113       throw FinleyAdapterException(" Error - ReducedNodes does not support tags.");
2114       break;
2115       case(Elements):
2116       out=mesh->Elements->Tag[sampleNo];
2117       break;
2118       case(ReducedElements):
2119       out=mesh->Elements->Tag[sampleNo];
2120       break;
2121       case(FaceElements):
2122       out=mesh->FaceElements->Tag[sampleNo];
2123       break;
2124       case(ReducedFaceElements):
2125       out=mesh->FaceElements->Tag[sampleNo];
2126       break;
2127       case(Points):
2128       out=mesh->Points->Tag[sampleNo];
2129       break;
2130       case(ContactElementsZero):
2131       out=mesh->ContactElements->Tag[sampleNo];
2132       break;
2133       case(ReducedContactElementsZero):
2134       out=mesh->ContactElements->Tag[sampleNo];
2135       break;
2136       case(ContactElementsOne):
2137       out=mesh->ContactElements->Tag[sampleNo];
2138       break;
2139       case(ReducedContactElementsOne):
2140       out=mesh->ContactElements->Tag[sampleNo];
2141       break;
2142       case(DegreesOfFreedom):
2143       throw FinleyAdapterException(" Error - DegreesOfFreedom does not support tags.");
2144       break;
2145       case(ReducedDegreesOfFreedom):
2146       throw FinleyAdapterException(" Error - ReducedDegreesOfFreedom does not support tags.");
2147       break;
2148       default:
2149          stringstream temp;
2150          temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();
2151          throw FinleyAdapterException(temp.str());
2152        break;        break;
2153      }     }
2154    case(Elements):     return out;
     out=mesh->Elements->Id;  
     break;  
   case(FaceElements):  
     out=mesh->FaceElements->Id;  
     break;  
   case(Points):  
     out=mesh->Points->Id;  
     break;  
   case(ContactElementsZero):  
     out=mesh->ContactElements->Id;  
     break;  
   case(ContactElementsOne):  
     out=mesh->ContactElements->Id;  
     break;  
   case(DegreesOfFreedom):  
     out=mesh->Nodes->degreeOfFreedomId;  
     break;  
   case(ReducedDegreesOfFreedom):  
     out=mesh->Nodes->reducedDegreeOfFreedomId;  
     break;  
   default:  
     stringstream temp;  
     temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();  
     throw FinleyAdapterException(temp.str());  
     break;  
   }  
   return out;  
2155  }  }
2156    
2157    
2158  void MeshAdapter::setTags(const int functionSpaceType, const int newTag, const escript::Data& mask) const  void MeshAdapter::setTags(const int functionSpaceType, const int newTag, const escript::Data& mask) const
2159  {  {
2160       Finley_Mesh* mesh=m_finleyMesh.get();
2161       escriptDataC tmp=mask.getDataC();
2162       switch(functionSpaceType) {
2163       case(Nodes):
2164       Finley_NodeFile_setTags(mesh->Nodes,newTag,&tmp);
2165       break;
2166       case(ReducedNodes):
2167       throw FinleyAdapterException("Error - ReducedNodes does not support tags");
2168       break;
2169       case(DegreesOfFreedom):
2170       throw FinleyAdapterException("Error - DegreesOfFreedom does not support tags");
2171       break;
2172       case(ReducedDegreesOfFreedom):
2173       throw FinleyAdapterException("Error - ReducedDegreesOfFreedom does not support tags");
2174       break;
2175       case(Elements):
2176       Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);
2177       break;
2178       case(ReducedElements):
2179       Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);
2180       break;
2181       case(FaceElements):
2182       Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);
2183       break;
2184       case(ReducedFaceElements):
2185       Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);
2186       break;
2187       case(Points):
2188       Finley_ElementFile_setTags(mesh->Points,newTag,&tmp);
2189       break;
2190       case(ContactElementsZero):
2191       Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2192       break;
2193       case(ReducedContactElementsZero):
2194       Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2195       break;
2196       case(ContactElementsOne):
2197       Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2198       break;
2199       case(ReducedContactElementsOne):
2200       Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2201       break;
2202       default:
2203          stringstream temp;
2204          temp << "Error - Finley does not know anything about function space type " << functionSpaceType;
2205          throw FinleyAdapterException(temp.str());
2206       }
2207       checkFinleyError();
2208       return;
2209    }
2210    
2211    void MeshAdapter::setTagMap(const std::string& name,  int tag)
2212    {
2213       Finley_Mesh* mesh=m_finleyMesh.get();
2214       Finley_Mesh_addTagMap(mesh, name.c_str(),tag);
2215       checkPasoError();
2216       // throwStandardException("MeshAdapter::set TagMap is not implemented.");
2217    }
2218    
2219    int MeshAdapter::getTag(const std::string& name) const
2220    {
2221       Finley_Mesh* mesh=m_finleyMesh.get();
2222       int tag=0;
2223       tag=Finley_Mesh_getTag(mesh, name.c_str());
2224       checkPasoError();
2225       // throwStandardException("MeshAdapter::getTag is not implemented.");
2226       return tag;
2227    }
2228    
2229    bool MeshAdapter::isValidTagName(const std::string& name) const
2230    {
2231       Finley_Mesh* mesh=m_finleyMesh.get();
2232       return Finley_Mesh_isValidTagName(mesh,name.c_str());
2233    }
2234    
2235    std::string MeshAdapter::showTagNames() const
2236    {
2237       stringstream temp;
2238       Finley_Mesh* mesh=m_finleyMesh.get();
2239       Finley_TagMap* tag_map=mesh->TagMap;
2240       while (tag_map) {
2241          temp << tag_map->name;
2242          tag_map=tag_map->next;
2243          if (tag_map) temp << ", ";
2244       }
2245       return temp.str();
2246    }
2247    
2248    int MeshAdapter::getNumberOfTagsInUse(int functionSpaceCode) const
2249    {
2250    Finley_Mesh* mesh=m_finleyMesh.get();    Finley_Mesh* mesh=m_finleyMesh.get();
2251    escriptDataC tmp=mask.getDataC();    dim_t numTags=0;
2252    switch(functionSpaceType) {    switch(functionSpaceCode) {
2253         case(Nodes):     case(Nodes):
2254            Finley_NodeFile_setTags(mesh->Nodes,newTag,&tmp);            numTags=mesh->Nodes->numTagsInUse;
2255              break;
2256       case(ReducedNodes):
2257              throw FinleyAdapterException("Error - ReducedNodes does not support tags");
2258            break;            break;
2259         case(DegreesOfFreedom):     case(DegreesOfFreedom):
2260            throw FinleyAdapterException("Error - DegreesOfFreedom does not support tags");            throw FinleyAdapterException("Error - DegreesOfFreedom does not support tags");
2261            break;            break;
2262         case(ReducedDegreesOfFreedom):     case(ReducedDegreesOfFreedom):
2263            throw FinleyAdapterException("Error - ReducedDegreesOfFreedom does not support tags");            throw FinleyAdapterException("Error - ReducedDegreesOfFreedom does not support tags");
2264            break;            break;
2265         case(Elements):     case(Elements):
2266            Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);     case(ReducedElements):
2267              numTags=mesh->Elements->numTagsInUse;
2268              break;
2269       case(FaceElements):
2270       case(ReducedFaceElements):
2271              numTags=mesh->FaceElements->numTagsInUse;
2272              break;
2273       case(Points):
2274              numTags=mesh->Points->numTagsInUse;
2275              break;
2276       case(ContactElementsZero):
2277       case(ReducedContactElementsZero):
2278       case(ContactElementsOne):
2279       case(ReducedContactElementsOne):
2280              numTags=mesh->ContactElements->numTagsInUse;
2281            break;            break;
2282         case(FaceElements):     default:
2283            Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);        stringstream temp;
2284          temp << "Error - Finley does not know anything about function space type " << functionSpaceCode;
2285          throw FinleyAdapterException(temp.str());
2286      }
2287      return numTags;
2288    }
2289    
2290    const int* MeshAdapter::borrowListOfTagsInUse(int functionSpaceCode) const
2291    {
2292      Finley_Mesh* mesh=m_finleyMesh.get();
2293      index_t* tags=NULL;
2294      switch(functionSpaceCode) {
2295       case(Nodes):
2296              tags=mesh->Nodes->tagsInUse;
2297            break;            break;
2298         case(Points):     case(ReducedNodes):
2299            Finley_ElementFile_setTags(mesh->Points,newTag,&tmp);            throw FinleyAdapterException("Error - ReducedNodes does not support tags");
2300            break;            break;
2301         case(ContactElementsZero):     case(DegreesOfFreedom):
2302            Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);            throw FinleyAdapterException("Error - DegreesOfFreedom does not support tags");
2303              break;
2304       case(ReducedDegreesOfFreedom):
2305              throw FinleyAdapterException("Error - ReducedDegreesOfFreedom does not support tags");
2306            break;            break;
2307         case(ContactElementsOne):     case(Elements):
2308            Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);     case(ReducedElements):
2309              tags=mesh->Elements->tagsInUse;
2310              break;
2311       case(FaceElements):
2312       case(ReducedFaceElements):
2313              tags=mesh->FaceElements->tagsInUse;
2314              break;
2315       case(Points):
2316              tags=mesh->Points->tagsInUse;
2317              break;
2318       case(ContactElementsZero):
2319       case(ReducedContactElementsZero):
2320       case(ContactElementsOne):
2321       case(ReducedContactElementsOne):
2322              tags=mesh->ContactElements->tagsInUse;
2323            break;            break;
2324         default:     default:
2325            stringstream temp;        stringstream temp;
2326            temp << "Error - Finley does not know anything about function space type " << functionSpaceType;        temp << "Error - Finley does not know anything about function space type " << functionSpaceCode;
2327            throw FinleyAdapterException(temp.str());        throw FinleyAdapterException(temp.str());
2328    }    }
2329    checkFinleyError();    return tags;
   return;  
2330  }  }
2331    
 void MeshAdapter::setTagMap(const std::string& name,  int tag)  
 {  
   Finley_Mesh* mesh=m_finleyMesh.get();  
   Finley_Mesh_addTagMap(mesh, name.c_str(),tag);  
   checkPasoError();  
   // throwStandardException("MeshAdapter::set TagMap is not implemented.");  
 }  
2332    
2333  int MeshAdapter::getTag(const std::string& name) const  bool MeshAdapter::canTag(int functionSpaceCode) const
2334  {  {
2335    Finley_Mesh* mesh=m_finleyMesh.get();    switch(functionSpaceCode) {
2336    int tag=0;     case(Nodes):
2337    tag=Finley_Mesh_getTag(mesh, name.c_str());     case(Elements):
2338    checkPasoError();     case(ReducedElements):
2339    // throwStandardException("MeshAdapter::getTag is not implemented.");     case(FaceElements):
2340    return tag;     case(ReducedFaceElements):
2341       case(Points):
2342       case(ContactElementsZero):
2343       case(ReducedContactElementsZero):
2344       case(ContactElementsOne):
2345       case(ReducedContactElementsOne):
2346              return true;
2347       case(ReducedNodes):
2348       case(DegreesOfFreedom):
2349       case(ReducedDegreesOfFreedom):
2350          return false;
2351       default:
2352        return false;
2353      }
2354  }  }
2355    
2356  bool MeshAdapter::isValidTagName(const std::string& name) const  AbstractDomain::StatusType MeshAdapter::getStatus() const
2357  {  {
2358    Finley_Mesh* mesh=m_finleyMesh.get();    Finley_Mesh* mesh=m_finleyMesh.get();
2359    return Finley_Mesh_isValidTagName(mesh,name.c_str());    return Finley_Mesh_getStatus(mesh);
2360  }  }
2361    
2362  std::string MeshAdapter::showTagNames() const  
 {  
   stringstream temp;  
   Finley_Mesh* mesh=m_finleyMesh.get();  
   Finley_TagMap* tag_map=mesh->TagMap;  
   while (tag_map) {  
      temp << tag_map->name;  
      tag_map=tag_map->next;  
      if (tag_map) temp << ", ";  
   }  
   return temp.str();  
 }  
2363    
2364  }  // end of namespace  }  // end of namespace

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