/[escript]/branches/domexper/dudley/src/CPPAdapter/MeshAdapter.cpp
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revision 2315 by gross, Wed Mar 18 00:38:48 2009 UTC revision 2640 by jfenwick, Mon Aug 31 06:22:10 2009 UTC
# Line 1  Line 1 
1    
2  /*******************************************************  /*******************************************************
3  *  *
4  * Copyright (c) 2003-2008 by University of Queensland  * Copyright (c) 2003-2009 by University of Queensland
5  * Earth Systems Science Computational Center (ESSCC)  * Earth Systems Science Computational Center (ESSCC)
6  * http://www.uq.edu.au/esscc  * http://www.uq.edu.au/esscc
7  *  *
# Line 96  bool MeshAdapter::onMasterProcessor() co Line 96  bool MeshAdapter::onMasterProcessor() co
96  }  }
97    
98    
99    #ifdef PASO_MPI
100      MPI_Comm
101    #else
102      unsigned int
103    #endif
104    MeshAdapter::getMPIComm() const
105    {
106    #ifdef PASO_MPI
107        return mesh->MPIInfo->comm;
108    #else
109        return 0;
110    #endif
111    }
112    
113    
114  Finley_Mesh* MeshAdapter::getFinley_Mesh() const {  Finley_Mesh* MeshAdapter::getFinley_Mesh() const {
115     return m_finleyMesh.get();     return m_finleyMesh.get();
116  }  }
# Line 109  void MeshAdapter::write(const std::strin Line 124  void MeshAdapter::write(const std::strin
124     TMPMEMFREE(fName);     TMPMEMFREE(fName);
125  }  }
126    
127  void MeshAdapter::Print_Mesh_Info(const bool full=false) const  void MeshAdapter::Print_Mesh_Info(const bool full) const
128  {  {
129     Finley_PrintMesh_Info(m_finleyMesh.get(), full);     Finley_PrintMesh_Info(m_finleyMesh.get(), full);
130  }  }
# Line 881  void MeshAdapter::interpolateOnDomain(es Line 896  void MeshAdapter::interpolateOnDomain(es
896     escriptDataC _in=in.getDataC();     escriptDataC _in=in.getDataC();
897     switch(in.getFunctionSpace().getTypeCode()) {     switch(in.getFunctionSpace().getTypeCode()) {
898     case(Nodes):     case(Nodes):
899     switch(target.getFunctionSpace().getTypeCode()) {        switch(target.getFunctionSpace().getTypeCode()) {
900     case(Nodes):        case(Nodes):
901     case(ReducedNodes):        case(ReducedNodes):
902     case(DegreesOfFreedom):        case(DegreesOfFreedom):
903     case(ReducedDegreesOfFreedom):        case(ReducedDegreesOfFreedom):
904     Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);        Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
    break;  
    case(Elements):  
    case(ReducedElements):  
    Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);  
    break;  
    case(FaceElements):  
    case(ReducedFaceElements):  
    Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);  
    break;  
    case(Points):  
    Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);  
    break;  
    case(ContactElementsZero):  
    case(ReducedContactElementsZero):  
    Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);  
    break;  
    case(ContactElementsOne):  
    case(ReducedContactElementsOne):  
    Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);  
    break;  
    default:  
       stringstream temp;  
       temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();  
       throw FinleyAdapterException(temp.str());  
905        break;        break;
906     }        case(Elements):
907     break;        case(ReducedElements):
908     case(ReducedNodes):        Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
909     switch(target.getFunctionSpace().getTypeCode()) {        break;
910     case(Nodes):        case(FaceElements):
911     case(ReducedNodes):        case(ReducedFaceElements):
912     case(DegreesOfFreedom):        Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
913     case(ReducedDegreesOfFreedom):        break;
914     Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);        case(Points):
915     break;        Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
916     case(Elements):        break;
917     case(ReducedElements):        case(ContactElementsZero):
918     Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);        case(ReducedContactElementsZero):
919     break;        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
920     case(FaceElements):        break;
921     case(ReducedFaceElements):        case(ContactElementsOne):
922     Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);        case(ReducedContactElementsOne):
923     break;        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
924     case(Points):        break;
925     Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);        default:
926     break;           stringstream temp;
927     case(ContactElementsZero):           temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
928     case(ReducedContactElementsZero):           throw FinleyAdapterException(temp.str());
929     Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);           break;
930     break;        }
    case(ContactElementsOne):  
    case(ReducedContactElementsOne):  
    Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);  
    break;  
    default:  
       stringstream temp;  
       temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();  
       throw FinleyAdapterException(temp.str());  
931        break;        break;
    }  
    break;  
    case(Elements):  
    if (target.getFunctionSpace().getTypeCode()==Elements) {  
       Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);  
    } else if (target.getFunctionSpace().getTypeCode()==ReducedElements) {  
       Finley_Assemble_AverageElementData(mesh->Elements,&_target,&_in);  
    } else {  
       throw FinleyAdapterException("Error - No interpolation with data on elements possible.");  
    }  
    break;  
    case(ReducedElements):  
    if (target.getFunctionSpace().getTypeCode()==ReducedElements) {  
       Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);  
    } else {  
       throw FinleyAdapterException("Error - No interpolation with data on elements with reduced integration order possible.");  
    }  
    break;  
    case(FaceElements):  
    if (target.getFunctionSpace().getTypeCode()==FaceElements) {  
       Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);  
    } else if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {  
       Finley_Assemble_AverageElementData(mesh->FaceElements,&_target,&_in);  
    } else {  
       throw FinleyAdapterException("Error - No interpolation with data on face elements possible.");  
    }  
    break;  
    case(ReducedFaceElements):  
    if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {  
       Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);  
    } else {  
       throw FinleyAdapterException("Error - No interpolation with data on face elements with reduced integration order possible.");  
    }  
    break;  
    case(Points):  
    if (target.getFunctionSpace().getTypeCode()==Points) {  
       Finley_Assemble_CopyElementData(mesh->Points,&_target,&_in);  
    } else {  
       throw FinleyAdapterException("Error - No interpolation with data on points possible.");  
    }  
    break;  
    case(ContactElementsZero):  
    case(ContactElementsOne):  
    if (target.getFunctionSpace().getTypeCode()==ContactElementsZero || target.getFunctionSpace().getTypeCode()==ContactElementsOne) {  
       Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);  
    } else if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {  
       Finley_Assemble_AverageElementData(mesh->ContactElements,&_target,&_in);  
    } else {  
       throw FinleyAdapterException("Error - No interpolation with data on contact elements possible.");  
    }  
    break;  
    case(ReducedContactElementsZero):  
    case(ReducedContactElementsOne):  
    if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {  
       Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);  
    } else {  
       throw FinleyAdapterException("Error - No interpolation with data on contact elements with reduced integration order possible.");  
    }  
    break;  
    case(DegreesOfFreedom):        
    switch(target.getFunctionSpace().getTypeCode()) {  
    case(ReducedDegreesOfFreedom):  
    case(DegreesOfFreedom):  
    Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);  
    break;  
   
    case(Nodes):  
932     case(ReducedNodes):     case(ReducedNodes):
933     if (getMPISize()>1) {        switch(target.getFunctionSpace().getTypeCode()) {
934        escript::Data temp=escript::Data(in);        case(Nodes):
935        temp.expand();        case(ReducedNodes):
936        escriptDataC _in2 = temp.getDataC();        case(DegreesOfFreedom):
937        Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);        case(ReducedDegreesOfFreedom):
    } else {  
938        Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);        Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
939     }        break;
940     break;        case(Elements):
941     case(Elements):        case(ReducedElements):
    case(ReducedElements):  
    if (getMPISize()>1) {  
       escript::Data temp=escript::Data( in,  continuousFunction(asAbstractContinuousDomain()) );  
       escriptDataC _in2 = temp.getDataC();  
       Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);  
    } else {  
942        Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);        Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
943     }        break;
944     break;        case(FaceElements):
945     case(FaceElements):        case(ReducedFaceElements):
    case(ReducedFaceElements):  
    if (getMPISize()>1) {  
       escript::Data temp=escript::Data( in,  continuousFunction(asAbstractContinuousDomain()) );  
       escriptDataC _in2 = temp.getDataC();  
       Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);  
   
    } else {  
946        Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);        Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
947     }        break;
948     break;        case(Points):
    case(Points):  
    if (getMPISize()>1) {  
       escript::Data temp=escript::Data( in,  continuousFunction(asAbstractContinuousDomain()) );  
       escriptDataC _in2 = temp.getDataC();  
    } else {  
949        Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);        Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
950     }        break;
951     break;        case(ContactElementsZero):
952     case(ContactElementsZero):        case(ReducedContactElementsZero):
    case(ContactElementsOne):  
    case(ReducedContactElementsZero):  
    case(ReducedContactElementsOne):  
    if (getMPISize()>1) {  
       escript::Data temp=escript::Data( in,  continuousFunction(asAbstractContinuousDomain()) );  
       escriptDataC _in2 = temp.getDataC();  
       Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);  
    } else {  
953        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
    }  
    break;  
    default:  
       stringstream temp;  
       temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();  
       throw FinleyAdapterException(temp.str());  
954        break;        break;
955     }        case(ContactElementsOne):
956     break;        case(ReducedContactElementsOne):
957     case(ReducedDegreesOfFreedom):        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
958     switch(target.getFunctionSpace().getTypeCode()) {        break;
959     case(Nodes):        default:
960     throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to mesh nodes.");           stringstream temp;
961     break;           temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
962     case(ReducedNodes):           throw FinleyAdapterException(temp.str());
963     if (getMPISize()>1) {           break;
964        escript::Data temp=escript::Data(in);        }
965        temp.expand();        break;
       escriptDataC _in2 = temp.getDataC();  
       Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);  
    } else {  
       Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);  
    }  
    break;  
    case(DegreesOfFreedom):  
    throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to degrees of freedom");  
    break;  
    case(ReducedDegreesOfFreedom):  
    Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);  
    break;  
966     case(Elements):     case(Elements):
967          if (target.getFunctionSpace().getTypeCode()==Elements) {
968             Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
969          } else if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
970             Finley_Assemble_AverageElementData(mesh->Elements,&_target,&_in);
971          } else {
972             throw FinleyAdapterException("Error - No interpolation with data on elements possible.");
973          }
974          break;
975     case(ReducedElements):     case(ReducedElements):
976     if (getMPISize()>1) {        if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
977        escript::Data temp=escript::Data( in,  reducedContinuousFunction(asAbstractContinuousDomain()) );           Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
978        escriptDataC _in2 = temp.getDataC();        } else {
979        Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);           throw FinleyAdapterException("Error - No interpolation with data on elements with reduced integration order possible.");
980     } else {        }
981        Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);        break;
    }  
    break;  
982     case(FaceElements):     case(FaceElements):
983          if (target.getFunctionSpace().getTypeCode()==FaceElements) {
984             Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
985          } else if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {
986             Finley_Assemble_AverageElementData(mesh->FaceElements,&_target,&_in);
987          } else {
988             throw FinleyAdapterException("Error - No interpolation with data on face elements possible.");
989          }
990          break;
991     case(ReducedFaceElements):     case(ReducedFaceElements):
992     if (getMPISize()>1) {        if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {
993        escript::Data temp=escript::Data( in,  reducedContinuousFunction(asAbstractContinuousDomain()) );           Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
994        escriptDataC _in2 = temp.getDataC();        } else {
995        Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);           throw FinleyAdapterException("Error - No interpolation with data on face elements with reduced integration order possible.");
996     } else {        }
997        Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);        break;
    }  
    break;  
998     case(Points):     case(Points):
999     if (getMPISize()>1) {        if (target.getFunctionSpace().getTypeCode()==Points) {
1000        escript::Data temp=escript::Data( in,  reducedContinuousFunction(asAbstractContinuousDomain()) );           Finley_Assemble_CopyElementData(mesh->Points,&_target,&_in);
1001        escriptDataC _in2 = temp.getDataC();        } else {
1002        Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in2,&_target);           throw FinleyAdapterException("Error - No interpolation with data on points possible.");
1003     } else {        }
1004        Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);        break;
    }  
    break;  
1005     case(ContactElementsZero):     case(ContactElementsZero):
1006     case(ContactElementsOne):     case(ContactElementsOne):
1007          if (target.getFunctionSpace().getTypeCode()==ContactElementsZero || target.getFunctionSpace().getTypeCode()==ContactElementsOne) {
1008             Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
1009          } else if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
1010             Finley_Assemble_AverageElementData(mesh->ContactElements,&_target,&_in);
1011          } else {
1012             throw FinleyAdapterException("Error - No interpolation with data on contact elements possible.");
1013          }
1014          break;
1015     case(ReducedContactElementsZero):     case(ReducedContactElementsZero):
1016     case(ReducedContactElementsOne):     case(ReducedContactElementsOne):
1017     if (getMPISize()>1) {        if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
1018        escript::Data temp=escript::Data( in,  reducedContinuousFunction(asAbstractContinuousDomain()) );           Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
1019        escriptDataC _in2 = temp.getDataC();        } else {
1020        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);           throw FinleyAdapterException("Error - No interpolation with data on contact elements with reduced integration order possible.");
1021     } else {        }
1022        Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);        break;
1023     }     case(DegreesOfFreedom):      
1024     break;        switch(target.getFunctionSpace().getTypeCode()) {
1025     default:        case(ReducedDegreesOfFreedom):
1026        stringstream temp;        case(DegreesOfFreedom):
1027        temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();        Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1028        throw FinleyAdapterException(temp.str());        break;
1029      
1030          case(Nodes):
1031          case(ReducedNodes):
1032          if (getMPISize()>1) {
1033             escript::Data temp=escript::Data(in);
1034             temp.expand();
1035             escriptDataC _in2 = temp.getDataC();
1036             Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1037          } else {
1038             Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1039          }
1040          break;
1041          case(Elements):
1042          case(ReducedElements):
1043          if (getMPISize()>1) {
1044             escript::Data temp=escript::Data( in,  continuousFunction(asAbstractContinuousDomain()) );
1045             escriptDataC _in2 = temp.getDataC();
1046             Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1047          } else {
1048             Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1049          }
1050          break;
1051          case(FaceElements):
1052          case(ReducedFaceElements):
1053          if (getMPISize()>1) {
1054             escript::Data temp=escript::Data( in,  continuousFunction(asAbstractContinuousDomain()) );
1055             escriptDataC _in2 = temp.getDataC();
1056             Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1057      
1058          } else {
1059             Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1060          }
1061          break;
1062          case(Points):
1063          if (getMPISize()>1) {
1064             escript::Data temp=escript::Data( in,  continuousFunction(asAbstractContinuousDomain()) );
1065             escriptDataC _in2 = temp.getDataC();
1066          } else {
1067             Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1068          }
1069          break;
1070          case(ContactElementsZero):
1071          case(ContactElementsOne):
1072          case(ReducedContactElementsZero):
1073          case(ReducedContactElementsOne):
1074          if (getMPISize()>1) {
1075             escript::Data temp=escript::Data( in,  continuousFunction(asAbstractContinuousDomain()) );
1076             escriptDataC _in2 = temp.getDataC();
1077             Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1078          } else {
1079             Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1080          }
1081          break;
1082          default:
1083             stringstream temp;
1084             temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1085             throw FinleyAdapterException(temp.str());
1086             break;
1087          }
1088          break;
1089       case(ReducedDegreesOfFreedom):
1090          switch(target.getFunctionSpace().getTypeCode()) {
1091          case(Nodes):
1092          throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to mesh nodes.");
1093          break;
1094          case(ReducedNodes):
1095          if (getMPISize()>1) {
1096             escript::Data temp=escript::Data(in);
1097             temp.expand();
1098             escriptDataC _in2 = temp.getDataC();
1099             Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1100          } else {
1101             Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1102          }
1103          break;
1104          case(DegreesOfFreedom):
1105          throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to degrees of freedom");
1106          break;
1107          case(ReducedDegreesOfFreedom):
1108          Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1109          break;
1110          case(Elements):
1111          case(ReducedElements):
1112          if (getMPISize()>1) {
1113             escript::Data temp=escript::Data( in,  reducedContinuousFunction(asAbstractContinuousDomain()) );
1114             escriptDataC _in2 = temp.getDataC();
1115             Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1116          } else {
1117             Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1118          }
1119          break;
1120          case(FaceElements):
1121          case(ReducedFaceElements):
1122          if (getMPISize()>1) {
1123             escript::Data temp=escript::Data( in,  reducedContinuousFunction(asAbstractContinuousDomain()) );
1124             escriptDataC _in2 = temp.getDataC();
1125             Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1126          } else {
1127             Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1128          }
1129          break;
1130          case(Points):
1131          if (getMPISize()>1) {
1132             escript::Data temp=escript::Data( in,  reducedContinuousFunction(asAbstractContinuousDomain()) );
1133             escriptDataC _in2 = temp.getDataC();
1134             Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in2,&_target);
1135          } else {
1136             Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1137          }
1138          break;
1139          case(ContactElementsZero):
1140          case(ContactElementsOne):
1141          case(ReducedContactElementsZero):
1142          case(ReducedContactElementsOne):
1143          if (getMPISize()>1) {
1144             escript::Data temp=escript::Data( in,  reducedContinuousFunction(asAbstractContinuousDomain()) );
1145             escriptDataC _in2 = temp.getDataC();
1146             Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1147          } else {
1148             Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1149          }
1150          break;
1151          default:
1152             stringstream temp;
1153             temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1154             throw FinleyAdapterException(temp.str());
1155             break;
1156          }
1157        break;        break;
    }  
    break;  
1158     default:     default:
1159        stringstream temp;        stringstream temp;
1160        temp << "Error - Interpolation On Domain: Finley does not know anything about function space type %d" << in.getFunctionSpace().getTypeCode();        temp << "Error - Interpolation On Domain: Finley does not know anything about function space type %d" << in.getFunctionSpace().getTypeCode();
# Line 1453  void MeshAdapter::setNewX(const escript: Line 1468  void MeshAdapter::setNewX(const escript:
1468     const MeshAdapter& newDomain=dynamic_cast<const MeshAdapter&>(*(new_x.getFunctionSpace().getDomain()));     const MeshAdapter& newDomain=dynamic_cast<const MeshAdapter&>(*(new_x.getFunctionSpace().getDomain()));
1469     if (newDomain!=*this)     if (newDomain!=*this)
1470        throw FinleyAdapterException("Error - Illegal domain of new point locations");        throw FinleyAdapterException("Error - Illegal domain of new point locations");
1471     tmp = new_x.getDataC();     if ( new_x.getFunctionSpace() == continuousFunction(asAbstractContinuousDomain()) ) {
1472     Finley_Mesh_setCoordinates(mesh,&tmp);         tmp = new_x.getDataC();
1473           Finley_Mesh_setCoordinates(mesh,&tmp);
1474       } else {
1475           escript::Data new_x_inter=escript::Data( new_x,  continuousFunction(asAbstractContinuousDomain()) );
1476           tmp = new_x_inter.getDataC();
1477           Finley_Mesh_setCoordinates(mesh,&tmp);
1478       }
1479     checkFinleyError();     checkFinleyError();
1480  }  }
1481    
# Line 1512  void MeshAdapter::saveDX(const std::stri Line 1533  void MeshAdapter::saveDX(const std::stri
1533  //  //
1534  // saves mesh and optionally data arrays in VTK format  // saves mesh and optionally data arrays in VTK format
1535  //  //
1536  void MeshAdapter::saveVTK(const std::string& filename,const boost::python::dict& arg) const  void MeshAdapter::saveVTK(const std::string& filename,const boost::python::dict& arg,  const std::string& metadata, const std::string& metadata_schema) const
1537  {  {
1538     int num_data;     int num_data;
1539     char **names;     char **names;
# Line 1520  void MeshAdapter::saveVTK(const std::str Line 1541  void MeshAdapter::saveVTK(const std::str
1541     escriptDataC **ptr_data;     escriptDataC **ptr_data;
1542    
1543     extractArgsFromDict(arg, num_data, names, data, ptr_data);     extractArgsFromDict(arg, num_data, names, data, ptr_data);
1544     Finley_Mesh_saveVTK(filename.c_str(), m_finleyMesh.get(), num_data, names, ptr_data);     Finley_Mesh_saveVTK(filename.c_str(), m_finleyMesh.get(), num_data, names, ptr_data, metadata.c_str(), metadata_schema.c_str());
1545     checkFinleyError();     checkFinleyError();
1546    
1547     /* win32 refactor */     /* win32 refactor */
# Line 1579  SystemMatrixAdapter MeshAdapter::newSyst Line 1600  SystemMatrixAdapter MeshAdapter::newSyst
1600  #endif  #endif
1601     }     }
1602     else {     else {
1603        fsystemMatrix=Paso_SystemMatrix_alloc(type,fsystemMatrixPattern,row_blocksize,column_blocksize);        fsystemMatrix=Paso_SystemMatrix_alloc(type,fsystemMatrixPattern,row_blocksize,column_blocksize,FALSE);
1604     }     }
1605     checkPasoError();     checkPasoError();
1606     Paso_SystemMatrixPattern_free(fsystemMatrixPattern);     Paso_SystemMatrixPattern_free(fsystemMatrixPattern);
# Line 1655  bool MeshAdapter::isCellOriented(int fun Line 1676  bool MeshAdapter::isCellOriented(int fun
1676     return false;     return false;
1677  }  }
1678    
1679    bool
1680    MeshAdapter::commonFunctionSpace(const std::vector<int>& fs, int& resultcode) const
1681    {
1682       /* The idea is to use equivalence classes. [Types which can be interpolated back and forth]
1683        class 1: DOF <-> Nodes
1684        class 2: ReducedDOF <-> ReducedNodes
1685        class 3: Points
1686        class 4: Elements
1687        class 5: ReducedElements
1688        class 6: FaceElements
1689        class 7: ReducedFaceElements
1690        class 8: ContactElementZero <-> ContactElementOne
1691        class 9: ReducedContactElementZero <-> ReducedContactElementOne
1692    
1693       There is also a set of lines. Interpolation is possible down a line but not between lines.
1694       class 1 and 2 belong to all lines so aren't considered.
1695        line 0: class 3
1696        line 1: class 4,5
1697        line 2: class 6,7
1698        line 3: class 8,9
1699    
1700       For classes with multiple members (eg class 2) we have vars to record if there is at least one instance.
1701       eg hasnodes is true if we have at least one instance of Nodes.
1702       */
1703        if (fs.size()==0)
1704        {
1705        return false;
1706        }
1707        std::vector<int> hasclass(10);
1708        std::vector<int> hasline(4);    
1709        bool hasnodes=false;
1710        bool hasrednodes=false;
1711        bool hascez=false;
1712        bool hasrcez=false;
1713        for (int i=0;i<fs.size();++i)
1714        {
1715        switch(fs[i])
1716        {
1717        case(Nodes):   hasnodes=true;   // no break is deliberate
1718        case(DegreesOfFreedom):
1719            hasclass[1]=1;
1720            break;
1721        case(ReducedNodes):    hasrednodes=true;    // no break is deliberate
1722        case(ReducedDegreesOfFreedom):
1723            hasclass[2]=1;
1724            break;
1725        case(Points):
1726            hasline[0]=1;
1727            hasclass[3]=1;
1728            break;
1729        case(Elements):
1730            hasclass[4]=1;
1731            hasline[1]=1;
1732            break;
1733        case(ReducedElements):
1734            hasclass[5]=1;
1735            hasline[1]=1;
1736            break;
1737        case(FaceElements):
1738            hasclass[6]=1;
1739            hasline[2]=1;
1740            break;
1741        case(ReducedFaceElements):
1742            hasclass[7]=1;
1743            hasline[2]=1;
1744            break;
1745        case(ContactElementsZero):  hascez=true;    // no break is deliberate
1746        case(ContactElementsOne):
1747            hasclass[8]=1;
1748            hasline[3]=1;
1749            break;
1750        case(ReducedContactElementsZero):   hasrcez=true;   // no break is deliberate
1751        case(ReducedContactElementsOne):
1752            hasclass[9]=1;
1753            hasline[3]=1;
1754            break;
1755        default:
1756            return false;
1757        }
1758        }
1759        int totlines=hasline[0]+hasline[1]+hasline[2]+hasline[3];
1760        // fail if we have more than one leaf group
1761    
1762        if (totlines>1)
1763        {
1764        return false;   // there are at least two branches we can't interpolate between
1765        }
1766        else if (totlines==1)
1767        {
1768        if (hasline[0]==1)      // we have points
1769        {
1770            resultcode=Points;
1771        }
1772        else if (hasline[1]==1)
1773        {
1774            if (hasclass[5]==1)
1775            {
1776            resultcode=ReducedElements;
1777            }
1778            else
1779            {
1780            resultcode=Elements;
1781            }
1782        }
1783        else if (hasline[2]==1)
1784        {
1785            if (hasclass[7]==ReducedFaceElements)
1786            {
1787            resultcode=ReducedFaceElements;
1788            }
1789            else
1790            {
1791            resultcode=FaceElements;
1792            }
1793        }
1794        else    // so we must be in line3
1795        {
1796            if (hasclass[9]==1)
1797            {
1798            // need something from class 9
1799            resultcode=(hasrcez?ReducedContactElementsZero:ReducedContactElementsOne);
1800            }
1801            else
1802            {
1803            // something from class 8
1804            resultcode=(hascez?ContactElementsZero:ContactElementsOne);
1805            }
1806        }
1807        }
1808        else    // totlines==0
1809        {
1810        if (hasclass[2]==1)
1811        {
1812            // something from class 2
1813            resultcode=(hasrednodes?ReducedNodes:ReducedDegreesOfFreedom);
1814        }
1815        else
1816        {   // something from class 1
1817            resultcode=(hasnodes?Nodes:DegreesOfFreedom);
1818        }
1819        }
1820        return true;
1821    }
1822    
1823  bool MeshAdapter::probeInterpolationOnDomain(int functionSpaceType_source,int functionSpaceType_target) const  bool MeshAdapter::probeInterpolationOnDomain(int functionSpaceType_source,int functionSpaceType_target) const
1824  {  {
1825     switch(functionSpaceType_source) {     switch(functionSpaceType_source) {
1826     case(Nodes):     case(Nodes):
1827     switch(functionSpaceType_target) {      switch(functionSpaceType_target) {
1828     case(Nodes):      case(Nodes):
1829     case(ReducedNodes):      case(ReducedNodes):
1830     case(ReducedDegreesOfFreedom):      case(ReducedDegreesOfFreedom):
1831     case(DegreesOfFreedom):      case(DegreesOfFreedom):
1832     case(Elements):      case(Elements):
1833     case(ReducedElements):      case(ReducedElements):
1834     case(FaceElements):      case(FaceElements):
1835     case(ReducedFaceElements):      case(ReducedFaceElements):
1836     case(Points):      case(Points):
1837     case(ContactElementsZero):      case(ContactElementsZero):
1838     case(ReducedContactElementsZero):      case(ReducedContactElementsZero):
1839     case(ContactElementsOne):      case(ContactElementsOne):
1840     case(ReducedContactElementsOne):      case(ReducedContactElementsOne):
1841     return true;      return true;
1842     default:      default:
1843        stringstream temp;            stringstream temp;
1844        temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;            temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1845        throw FinleyAdapterException(temp.str());            throw FinleyAdapterException(temp.str());
    }  
    break;  
    case(ReducedNodes):  
    switch(functionSpaceType_target) {  
    case(ReducedNodes):  
    case(ReducedDegreesOfFreedom):  
    case(Elements):  
    case(ReducedElements):  
    case(FaceElements):  
    case(ReducedFaceElements):  
    case(Points):  
    case(ContactElementsZero):  
    case(ReducedContactElementsZero):  
    case(ContactElementsOne):  
    case(ReducedContactElementsOne):  
    return true;  
    case(Nodes):  
    case(DegreesOfFreedom):  
    return false;  
    default:  
       stringstream temp;  
       temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;  
       throw FinleyAdapterException(temp.str());  
1846     }     }
1847     break;     break;
    case(Elements):  
    if (functionSpaceType_target==Elements) {  
       return true;  
    } else if (functionSpaceType_target==ReducedElements) {  
       return true;  
    } else {  
       return false;  
    }  
    case(ReducedElements):  
    if (functionSpaceType_target==ReducedElements) {  
       return true;  
    } else {  
       return false;  
    }  
    case(FaceElements):  
    if (functionSpaceType_target==FaceElements) {  
       return true;  
    } else if (functionSpaceType_target==ReducedFaceElements) {  
       return true;  
    } else {  
       return false;  
    }  
    case(ReducedFaceElements):  
    if (functionSpaceType_target==ReducedFaceElements) {  
       return true;  
    } else {  
       return false;  
    }  
    case(Points):  
    if (functionSpaceType_target==Points) {  
       return true;  
    } else {  
       return false;  
    }  
    case(ContactElementsZero):  
    case(ContactElementsOne):  
    if (functionSpaceType_target==ContactElementsZero || functionSpaceType_target==ContactElementsOne) {  
       return true;  
    } else if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {  
       return true;  
    } else {  
       return false;  
    }  
    case(ReducedContactElementsZero):  
    case(ReducedContactElementsOne):  
    if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {  
       return true;  
    } else {  
       return false;  
    }  
    case(DegreesOfFreedom):  
    switch(functionSpaceType_target) {  
    case(ReducedDegreesOfFreedom):  
    case(DegreesOfFreedom):  
    case(Nodes):  
1848     case(ReducedNodes):     case(ReducedNodes):
1849     case(Elements):      switch(functionSpaceType_target) {
1850     case(ReducedElements):      case(ReducedNodes):
1851     case(Points):      case(ReducedDegreesOfFreedom):
1852     case(FaceElements):      case(Elements):
1853     case(ReducedFaceElements):      case(ReducedElements):
1854     case(ContactElementsZero):      case(FaceElements):
1855     case(ReducedContactElementsZero):      case(ReducedFaceElements):
1856     case(ContactElementsOne):      case(Points):
1857     case(ReducedContactElementsOne):      case(ContactElementsZero):
1858     return true;      case(ReducedContactElementsZero):
1859     default:      case(ContactElementsOne):
1860        stringstream temp;      case(ReducedContactElementsOne):
1861        temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;      return true;
1862        throw FinleyAdapterException(temp.str());      case(Nodes):
1863     }      case(DegreesOfFreedom):
1864     break;      return false;
1865        default:
1866            stringstream temp;
1867            temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1868            throw FinleyAdapterException(temp.str());
1869       }
1870       break;
1871       case(Elements):
1872        if (functionSpaceType_target==Elements) {
1873          return true;
1874        } else if (functionSpaceType_target==ReducedElements) {
1875          return true;
1876            } else {
1877              return false;
1878            }
1879       case(ReducedElements):
1880        if (functionSpaceType_target==ReducedElements) {
1881          return true;
1882        } else {
1883              return false;
1884        }
1885       case(FaceElements):
1886        if (functionSpaceType_target==FaceElements) {
1887                return true;
1888        } else if (functionSpaceType_target==ReducedFaceElements) {
1889                return true;
1890        } else {
1891                return false;
1892        }
1893       case(ReducedFaceElements):
1894        if (functionSpaceType_target==ReducedFaceElements) {
1895                return true;
1896        } else {
1897            return false;
1898        }
1899       case(Points):
1900        if (functionSpaceType_target==Points) {
1901                return true;
1902        } else {
1903                return false;
1904        }
1905       case(ContactElementsZero):
1906       case(ContactElementsOne):
1907        if (functionSpaceType_target==ContactElementsZero || functionSpaceType_target==ContactElementsOne) {
1908                return true;
1909        } else if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1910                return true;
1911        } else {
1912                return false;
1913        }
1914       case(ReducedContactElementsZero):
1915       case(ReducedContactElementsOne):
1916        if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1917                return true;
1918        } else {
1919                return false;
1920        }
1921       case(DegreesOfFreedom):
1922        switch(functionSpaceType_target) {
1923        case(ReducedDegreesOfFreedom):
1924        case(DegreesOfFreedom):
1925        case(Nodes):
1926        case(ReducedNodes):
1927        case(Elements):
1928        case(ReducedElements):
1929        case(Points):
1930        case(FaceElements):
1931        case(ReducedFaceElements):
1932        case(ContactElementsZero):
1933        case(ReducedContactElementsZero):
1934        case(ContactElementsOne):
1935        case(ReducedContactElementsOne):
1936        return true;
1937        default:
1938            stringstream temp;
1939            temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1940            throw FinleyAdapterException(temp.str());
1941        }
1942        break;
1943     case(ReducedDegreesOfFreedom):     case(ReducedDegreesOfFreedom):
1944     switch(functionSpaceType_target) {     switch(functionSpaceType_target) {
1945     case(ReducedDegreesOfFreedom):      case(ReducedDegreesOfFreedom):
1946     case(ReducedNodes):      case(ReducedNodes):
1947     case(Elements):      case(Elements):
1948     case(ReducedElements):      case(ReducedElements):
1949     case(FaceElements):      case(FaceElements):
1950     case(ReducedFaceElements):      case(ReducedFaceElements):
1951     case(Points):      case(Points):
1952     case(ContactElementsZero):      case(ContactElementsZero):
1953     case(ReducedContactElementsZero):      case(ReducedContactElementsZero):
1954     case(ContactElementsOne):      case(ContactElementsOne):
1955     case(ReducedContactElementsOne):      case(ReducedContactElementsOne):
1956     return true;      return true;
1957     case(Nodes):      case(Nodes):
1958     case(DegreesOfFreedom):      case(DegreesOfFreedom):
1959     return false;      return false;
1960     default:      default:
1961        stringstream temp;          stringstream temp;
1962        temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;          temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1963        throw FinleyAdapterException(temp.str());          throw FinleyAdapterException(temp.str());
1964     }      }
1965     break;      break;
1966     default:     default:
1967        stringstream temp;        stringstream temp;
1968        temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_source;        temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_source;
# Line 1858  escript::Data MeshAdapter::getSize() con Line 2023  escript::Data MeshAdapter::getSize() con
2023     return escript::function(asAbstractContinuousDomain()).getSize();     return escript::function(asAbstractContinuousDomain()).getSize();
2024  }  }
2025    
2026  int* MeshAdapter::borrowSampleReferenceIDs(int functionSpaceType) const  const int* MeshAdapter::borrowSampleReferenceIDs(int functionSpaceType) const
2027  {  {
2028     int *out = NULL;     int *out = NULL;
2029     Finley_Mesh* mesh=m_finleyMesh.get();     Finley_Mesh* mesh=m_finleyMesh.get();
# Line 2095  int MeshAdapter::getNumberOfTagsInUse(in Line 2260  int MeshAdapter::getNumberOfTagsInUse(in
2260    }    }
2261    return numTags;    return numTags;
2262  }  }
2263  int* MeshAdapter::borrowListOfTagsInUse(int functionSpaceCode) const  
2264    const int* MeshAdapter::borrowListOfTagsInUse(int functionSpaceCode) const
2265  {  {
2266    Finley_Mesh* mesh=m_finleyMesh.get();    Finley_Mesh* mesh=m_finleyMesh.get();
2267    index_t* tags=NULL;    index_t* tags=NULL;
# Line 2161  bool MeshAdapter::canTag(int functionSpa Line 2327  bool MeshAdapter::canTag(int functionSpa
2327    }    }
2328  }  }
2329    
2330    AbstractDomain::StatusType MeshAdapter::getStatus() const
2331    {
2332      Finley_Mesh* mesh=m_finleyMesh.get();
2333      return Finley_Mesh_getStatus(mesh);
2334    }
2335    
2336    
2337    
2338  }  // end of namespace  }  // end of namespace

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