/[escript]/branches/domexper/dudley/src/CPPAdapter/MeshAdapter.cpp
ViewVC logotype

Contents of /branches/domexper/dudley/src/CPPAdapter/MeshAdapter.cpp

Parent Directory Parent Directory | Revision Log Revision Log


Revision 1628 - (show annotations)
Fri Jul 11 13:12:46 2008 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File size: 81734 byte(s)

Merge in /branches/windows_from_1456_trunk_1620_merged_in branch.

You will find a preserved pre-merge trunk in tags under tags/trunk_at_1625.
That will be useful for diffing & checking on my stupidity.

Here is a list of the conflicts and their resolution at this
point in time.


=================================================================================
(LLWS == looks like white space).

finley/src/Assemble_addToSystemMatrix.c - resolve to branch - unused var. may be wrong.....
finley/src/CPPAdapter/SystemMatrixAdapter.cpp - resolve to branch - LLWS
finley/src/CPPAdapter/MeshAdapter.cpp - resolve to branch - LLWS
paso/src/PCG.c - resolve to branch - unused var fixes.
paso/src/SolverFCT.c - resolve to branch - LLWS
paso/src/FGMRES.c - resolve to branch - LLWS
paso/src/Common.h - resolve to trunk version. It's omp.h's include... not sure it's needed,
but for the sake of saftey.....
paso/src/Functions.c - resolve to branch version, indentation/tab removal and return error
on bad unimplemented Paso_FunctionCall.
paso/src/SolverFCT_solve.c - resolve to branch version, unused vars
paso/src/SparseMatrix_MatrixVector.c - resolve to branch version, unused vars.
escript/src/Utils.cpp - resloved to branch, needs WinSock2.h
escript/src/DataExpanded.cpp - resolved to branch version - LLWS
escript/src/DataFactory.cpp - resolve to branch version
=================================================================================

This currently passes tests on linux (debian), but is not checked on windows or Altix yet.

This checkin is to make a trunk I can check out for windows to do tests on it.

Known outstanding problem is in the operator=() method of exceptions
causing warning messages on the intel compilers.

May the God of doughnuts have mercy on my soul.


1
2 /* $Id$ */
3
4 /*******************************************************
5 *
6 * Copyright 2003-2007 by ACceSS MNRF
7 * Copyright 2007 by University of Queensland
8 *
9 * http://esscc.uq.edu.au
10 * Primary Business: Queensland, Australia
11 * Licensed under the Open Software License version 3.0
12 * http://www.opensource.org/licenses/osl-3.0.php
13 *
14 *******************************************************/
15
16 #include "MeshAdapter.h"
17 #include "escript/Data.h"
18 #include "escript/DataFactory.h"
19 #ifdef USE_NETCDF
20 #include <netcdfcpp.h>
21 #endif
22 extern "C" {
23 #include "escript/blocktimer.h"
24 }
25 #include <vector>
26
27 #define IS_THERE_A_REASON_FOR_THIS_MAGIC_NAME_LENGTH 256
28
29 using namespace std;
30 using namespace escript;
31
32 namespace finley {
33
34 //
35 // define the static constants
36 MeshAdapter::FunctionSpaceNamesMapType MeshAdapter::m_functionSpaceTypeNames;
37 const int MeshAdapter::DegreesOfFreedom=FINLEY_DEGREES_OF_FREEDOM;
38 const int MeshAdapter::ReducedDegreesOfFreedom=FINLEY_REDUCED_DEGREES_OF_FREEDOM;
39 const int MeshAdapter::Nodes=FINLEY_NODES;
40 const int MeshAdapter::ReducedNodes=FINLEY_REDUCED_NODES;
41 const int MeshAdapter::Elements=FINLEY_ELEMENTS;
42 const int MeshAdapter::ReducedElements=FINLEY_REDUCED_ELEMENTS;
43 const int MeshAdapter::FaceElements=FINLEY_FACE_ELEMENTS;
44 const int MeshAdapter::ReducedFaceElements=FINLEY_REDUCED_FACE_ELEMENTS;
45 const int MeshAdapter::Points=FINLEY_POINTS;
46 const int MeshAdapter::ContactElementsZero=FINLEY_CONTACT_ELEMENTS_1;
47 const int MeshAdapter::ReducedContactElementsZero=FINLEY_REDUCED_CONTACT_ELEMENTS_1;
48 const int MeshAdapter::ContactElementsOne=FINLEY_CONTACT_ELEMENTS_2;
49 const int MeshAdapter::ReducedContactElementsOne=FINLEY_REDUCED_CONTACT_ELEMENTS_2;
50
51 MeshAdapter::MeshAdapter(Finley_Mesh* finleyMesh)
52 {
53 setFunctionSpaceTypeNames();
54 //
55 // need to use a null_deleter as Finley_Mesh_free deletes the pointer
56 // for us.
57 m_finleyMesh.reset(finleyMesh,null_deleter());
58 }
59
60 //
61 // The copy constructor should just increment the use count
62 MeshAdapter::MeshAdapter(const MeshAdapter& in):
63 m_finleyMesh(in.m_finleyMesh)
64 {
65 setFunctionSpaceTypeNames();
66 }
67
68 MeshAdapter::~MeshAdapter()
69 {
70 //
71 // I hope the case for the pointer being zero has been taken care of.
72 // cout << "In MeshAdapter destructor." << endl;
73 if (m_finleyMesh.unique()) {
74 Finley_Mesh_free(m_finleyMesh.get());
75 }
76 }
77
78 int MeshAdapter::getMPISize() const
79 {
80 return m_finleyMesh.get()->MPIInfo->size;
81 }
82 int MeshAdapter::getMPIRank() const
83 {
84 return m_finleyMesh.get()->MPIInfo->rank;
85 }
86
87
88 Finley_Mesh* MeshAdapter::getFinley_Mesh() const {
89 return m_finleyMesh.get();
90 }
91
92 void MeshAdapter::write(const std::string& fileName) const
93 {
94 char *fName = (fileName.size()+1>0) ? TMPMEMALLOC(fileName.size()+1,char) : (char*)NULL;
95 strcpy(fName,fileName.c_str());
96 Finley_Mesh_write(m_finleyMesh.get(),fName);
97 checkFinleyError();
98 TMPMEMFREE(fName);
99 }
100
101 void MeshAdapter::Print_Mesh_Info(const bool full=false) const
102 {
103 Finley_PrintMesh_Info(m_finleyMesh.get(), full);
104 }
105
106 void MeshAdapter::dump(const std::string& fileName) const
107 {
108 #ifdef USE_NETCDF
109 const NcDim* ncdims[12];
110 NcVar *ids, *data;
111 int *int_ptr;
112 Finley_Mesh *mesh = m_finleyMesh.get();
113 Finley_TagMap* tag_map;
114 int num_Tags = 0;
115 int mpi_size = mesh->MPIInfo->size;
116 int mpi_rank = mesh->MPIInfo->rank;
117 int numDim = mesh->Nodes->numDim;
118 int numNodes = mesh->Nodes->numNodes;
119 int num_Elements = mesh->Elements->numElements;
120 int num_FaceElements = mesh->FaceElements->numElements;
121 int num_ContactElements = mesh->ContactElements->numElements;
122 int num_Points = mesh->Points->numElements;
123 int num_Elements_numNodes = mesh->Elements->numNodes;
124 int num_FaceElements_numNodes = mesh->FaceElements->numNodes;
125 int num_ContactElements_numNodes = mesh->ContactElements->numNodes;
126
127 // I don't think the strdup is needed since Paso_MPI_appendRankToFileName
128 // does it's own allocation.
129 // char *newFileName = Paso_MPI_appendRankToFileName(strdup(fileName.c_str()), mpi_size, mpi_rank);
130
131 char *newFileName = Paso_MPI_appendRankToFileName(fileName.c_str(),
132 mpi_size, mpi_rank);
133
134 /* Figure out how much storage is required for tags */
135 tag_map = mesh->TagMap;
136 if (tag_map) {
137 while (tag_map) {
138 num_Tags++;
139 tag_map=tag_map->next;
140 }
141 }
142
143 // NetCDF error handler
144 NcError err(NcError::verbose_nonfatal);
145 // Create the file.
146 NcFile dataFile(newFileName, NcFile::Replace);
147 // check if writing was successful
148 if (!dataFile.is_valid())
149 throw DataException("Error - MeshAdapter::dump: opening of NetCDF file for output failed: " + *newFileName);
150
151 // Define dimensions (num_Elements and dim_Elements are identical, dim_Elements only appears if > 0)
152 if (! (ncdims[0] = dataFile.add_dim("numNodes", numNodes)) )
153 throw DataException("Error - MeshAdapter::dump: appending dimension numNodes to netCDF file failed: " + *newFileName);
154 if (! (ncdims[1] = dataFile.add_dim("numDim", numDim)) )
155 throw DataException("Error - MeshAdapter::dump: appending dimension numDim to netCDF file failed: " + *newFileName);
156 if (! (ncdims[2] = dataFile.add_dim("mpi_size_plus_1", mpi_size+1)) )
157 throw DataException("Error - MeshAdapter::dump: appending dimension mpi_size to netCDF file failed: " + *newFileName);
158 if (num_Elements>0)
159 if (! (ncdims[3] = dataFile.add_dim("dim_Elements", num_Elements)) )
160 throw DataException("Error - MeshAdapter::dump: appending dimension dim_Elements to netCDF file failed: " + *newFileName);
161 if (num_FaceElements>0)
162 if (! (ncdims[4] = dataFile.add_dim("dim_FaceElements", num_FaceElements)) )
163 throw DataException("Error - MeshAdapter::dump: appending dimension dim_FaceElements to netCDF file failed: " + *newFileName);
164 if (num_ContactElements>0)
165 if (! (ncdims[5] = dataFile.add_dim("dim_ContactElements", num_ContactElements)) )
166 throw DataException("Error - MeshAdapter::dump: appending dimension dim_ContactElements to netCDF file failed: " + *newFileName);
167 if (num_Points>0)
168 if (! (ncdims[6] = dataFile.add_dim("dim_Points", num_Points)) )
169 throw DataException("Error - MeshAdapter::dump: appending dimension dim_Points to netCDF file failed: " + *newFileName);
170 if (num_Elements>0)
171 if (! (ncdims[7] = dataFile.add_dim("dim_Elements_Nodes", num_Elements_numNodes)) )
172 throw DataException("Error - MeshAdapter::dump: appending dimension dim_Elements_Nodes to netCDF file failed: " + *newFileName);
173 if (num_FaceElements>0)
174 if (! (ncdims[8] = dataFile.add_dim("dim_FaceElements_numNodes", num_FaceElements_numNodes)) )
175 throw DataException("Error - MeshAdapter::dump: appending dimension dim_FaceElements_numNodes to netCDF file failed: " + *newFileName);
176 if (num_ContactElements>0)
177 if (! (ncdims[9] = dataFile.add_dim("dim_ContactElements_numNodes", num_ContactElements_numNodes)) )
178 throw DataException("Error - MeshAdapter::dump: appending dimension dim_ContactElements_numNodes to netCDF file failed: " + *newFileName);
179 if (num_Tags>0)
180 if (! (ncdims[10] = dataFile.add_dim("dim_Tags", num_Tags)) )
181 throw DataException("Error - MeshAdapter::dump: appending dimension dim_Tags to netCDF file failed: " + *newFileName);
182
183 // Attributes: MPI size, MPI rank, Name, order, reduced_order
184 if (!dataFile.add_att("mpi_size", mpi_size) )
185 throw DataException("Error - MeshAdapter::dump: appending mpi_size to NetCDF file failed: " + *newFileName);
186 if (!dataFile.add_att("mpi_rank", mpi_rank) )
187 throw DataException("Error - MeshAdapter::dump: appending mpi_rank to NetCDF file failed: " + *newFileName);
188 if (!dataFile.add_att("Name",mesh->Name) )
189 throw DataException("Error - MeshAdapter::dump: appending Name to NetCDF file failed: " + *newFileName);
190 if (!dataFile.add_att("numDim",numDim) )
191 throw DataException("Error - MeshAdapter::dump: appending order to NetCDF file failed: " + *newFileName);
192 if (!dataFile.add_att("order",mesh->order) )
193 throw DataException("Error - MeshAdapter::dump: appending order to NetCDF file failed: " + *newFileName);
194 if (!dataFile.add_att("reduced_order",mesh->reduced_order) )
195 throw DataException("Error - MeshAdapter::dump: appending reduced_order to NetCDF file failed: " + *newFileName);
196 if (!dataFile.add_att("numNodes",numNodes) )
197 throw DataException("Error - MeshAdapter::dump: appending numNodes to NetCDF file failed: " + *newFileName);
198 if (!dataFile.add_att("num_Elements",num_Elements) )
199 throw DataException("Error - MeshAdapter::dump: appending num_Elements to NetCDF file failed: " + *newFileName);
200 if (!dataFile.add_att("num_FaceElements",num_FaceElements) )
201 throw DataException("Error - MeshAdapter::dump: appending num_FaceElements to NetCDF file failed: " + *newFileName);
202 if (!dataFile.add_att("num_ContactElements",num_ContactElements) )
203 throw DataException("Error - MeshAdapter::dump: appending num_ContactElements to NetCDF file failed: " + *newFileName);
204 if (!dataFile.add_att("num_Points",num_Points) )
205 throw DataException("Error - MeshAdapter::dump: appending num_Points to NetCDF file failed: " + *newFileName);
206 if (!dataFile.add_att("num_Elements_numNodes",num_Elements_numNodes) )
207 throw DataException("Error - MeshAdapter::dump: appending num_Elements_numNodes to NetCDF file failed: " + *newFileName);
208 if (!dataFile.add_att("num_FaceElements_numNodes",num_FaceElements_numNodes) )
209 throw DataException("Error - MeshAdapter::dump: appending num_FaceElements_numNodes to NetCDF file failed: " + *newFileName);
210 if (!dataFile.add_att("num_ContactElements_numNodes",num_ContactElements_numNodes) )
211 throw DataException("Error - MeshAdapter::dump: appending num_ContactElements_numNodes to NetCDF file failed: " + *newFileName);
212 if (!dataFile.add_att("Elements_TypeId", mesh->Elements->ReferenceElement->Type->TypeId) )
213 throw DataException("Error - MeshAdapter::dump: appending Elements_TypeId to NetCDF file failed: " + *newFileName);
214 if (!dataFile.add_att("FaceElements_TypeId", mesh->FaceElements->ReferenceElement->Type->TypeId) )
215 throw DataException("Error - MeshAdapter::dump: appending FaceElements_TypeId to NetCDF file failed: " + *newFileName);
216 if (!dataFile.add_att("ContactElements_TypeId", mesh->ContactElements->ReferenceElement->Type->TypeId) )
217 throw DataException("Error - MeshAdapter::dump: appending ContactElements_TypeId to NetCDF file failed: " + *newFileName);
218 if (!dataFile.add_att("Points_TypeId", mesh->Points->ReferenceElement->Type->TypeId) )
219 throw DataException("Error - MeshAdapter::dump: appending Points_TypeId to NetCDF file failed: " + *newFileName);
220 if (!dataFile.add_att("num_Tags", num_Tags) )
221 throw DataException("Error - MeshAdapter::dump: appending num_Tags to NetCDF file failed: " + *newFileName);
222
223 // // // // // Nodes // // // // //
224
225 // Only write nodes if non-empty because NetCDF doesn't like empty arrays (it treats them as NC_UNLIMITED)
226 if (numNodes>0) {
227
228 // Nodes Id
229 if (! ( ids = dataFile.add_var("Nodes_Id", ncInt, ncdims[0])) )
230 throw DataException("Error - MeshAdapter::dump: appending Nodes_Id to netCDF file failed: " + *newFileName);
231 int_ptr = &mesh->Nodes->Id[0];
232 if (! (ids->put(int_ptr, numNodes)) )
233 throw DataException("Error - MeshAdapter::dump: copy Nodes_Id to netCDF buffer failed: " + *newFileName);
234
235 // Nodes Tag
236 if (! ( ids = dataFile.add_var("Nodes_Tag", ncInt, ncdims[0])) )
237 throw DataException("Error - MeshAdapter::dump: appending Nodes_Tag to netCDF file failed: " + *newFileName);
238 int_ptr = &mesh->Nodes->Tag[0];
239 if (! (ids->put(int_ptr, numNodes)) )
240 throw DataException("Error - MeshAdapter::dump: copy Nodes_Tag to netCDF buffer failed: " + *newFileName);
241
242 // Nodes gDOF
243 if (! ( ids = dataFile.add_var("Nodes_gDOF", ncInt, ncdims[0])) )
244 throw DataException("Error - MeshAdapter::dump: appending Nodes_gDOF to netCDF file failed: " + *newFileName);
245 int_ptr = &mesh->Nodes->globalDegreesOfFreedom[0];
246 if (! (ids->put(int_ptr, numNodes)) )
247 throw DataException("Error - MeshAdapter::dump: copy Nodes_gDOF to netCDF buffer failed: " + *newFileName);
248
249 // Nodes global node index
250 if (! ( ids = dataFile.add_var("Nodes_gNI", ncInt, ncdims[0])) )
251 throw DataException("Error - MeshAdapter::dump: appending Nodes_gNI to netCDF file failed: " + *newFileName);
252 int_ptr = &mesh->Nodes->globalNodesIndex[0];
253 if (! (ids->put(int_ptr, numNodes)) )
254 throw DataException("Error - MeshAdapter::dump: copy Nodes_gNI to netCDF buffer failed: " + *newFileName);
255
256 // Nodes grDof
257 if (! ( ids = dataFile.add_var("Nodes_grDfI", ncInt, ncdims[0])) )
258 throw DataException("Error - MeshAdapter::dump: appending Nodes_grDfI to netCDF file failed: " + *newFileName);
259 int_ptr = &mesh->Nodes->globalReducedDOFIndex[0];
260 if (! (ids->put(int_ptr, numNodes)) )
261 throw DataException("Error - MeshAdapter::dump: copy Nodes_grDfI to netCDF buffer failed: " + *newFileName);
262
263 // Nodes grNI
264 if (! ( ids = dataFile.add_var("Nodes_grNI", ncInt, ncdims[0])) )
265 throw DataException("Error - MeshAdapter::dump: appending Nodes_grNI to netCDF file failed: " + *newFileName);
266 int_ptr = &mesh->Nodes->globalReducedNodesIndex[0];
267 if (! (ids->put(int_ptr, numNodes)) )
268 throw DataException("Error - MeshAdapter::dump: copy Nodes_grNI to netCDF buffer failed: " + *newFileName);
269
270 // Nodes Coordinates
271 if (! ( ids = dataFile.add_var("Nodes_Coordinates", ncDouble, ncdims[0], ncdims[1]) ) )
272 throw DataException("Error - MeshAdapter::dump: appending Nodes_Coordinates to netCDF file failed: " + *newFileName);
273 if (! (ids->put(&(mesh->Nodes->Coordinates[INDEX2(0,0,numDim)]), numNodes, numDim)) )
274 throw DataException("Error - MeshAdapter::dump: copy Nodes_Coordinates to netCDF buffer failed: " + *newFileName);
275
276 // Nodes degreesOfFreedomDistribution
277 if (! ( ids = dataFile.add_var("Nodes_DofDistribution", ncInt, ncdims[2])) )
278 throw DataException("Error - MeshAdapter::dump: appending Nodes_DofDistribution to netCDF file failed: " + *newFileName);
279 int_ptr = &mesh->Nodes->degreesOfFreedomDistribution->first_component[0];
280 if (! (ids->put(int_ptr, mpi_size+1)) )
281 throw DataException("Error - MeshAdapter::dump: copy Nodes_DofDistribution to netCDF buffer failed: " + *newFileName);
282
283 }
284
285 // // // // // Elements // // // // //
286
287 if (num_Elements>0) {
288
289 // Temp storage to gather node IDs
290 int *Elements_Nodes = TMPMEMALLOC(num_Elements*num_Elements_numNodes,int);
291
292 // Elements_Id
293 if (! ( ids = dataFile.add_var("Elements_Id", ncInt, ncdims[3])) )
294 throw DataException("Error - MeshAdapter::dump: appending Elements_Id to netCDF file failed: " + *newFileName);
295 int_ptr = &mesh->Elements->Id[0];
296 if (! (ids->put(int_ptr, num_Elements)) )
297 throw DataException("Error - MeshAdapter::dump: copy Elements_Id to netCDF buffer failed: " + *newFileName);
298
299 // Elements_Tag
300 if (! ( ids = dataFile.add_var("Elements_Tag", ncInt, ncdims[3])) )
301 throw DataException("Error - MeshAdapter::dump: appending Elements_Tag to netCDF file failed: " + *newFileName);
302 int_ptr = &mesh->Elements->Tag[0];
303 if (! (ids->put(int_ptr, num_Elements)) )
304 throw DataException("Error - MeshAdapter::dump: copy Elements_Tag to netCDF buffer failed: " + *newFileName);
305
306 // Elements_Owner
307 if (! ( ids = dataFile.add_var("Elements_Owner", ncInt, ncdims[3])) )
308 throw DataException("Error - MeshAdapter::dump: appending Elements_Owner to netCDF file failed: " + *newFileName);
309 int_ptr = &mesh->Elements->Owner[0];
310 if (! (ids->put(int_ptr, num_Elements)) )
311 throw DataException("Error - MeshAdapter::dump: copy Elements_Owner to netCDF buffer failed: " + *newFileName);
312
313 // Elements_Color
314 if (! ( ids = dataFile.add_var("Elements_Color", ncInt, ncdims[3])) )
315 throw DataException("Error - MeshAdapter::dump: appending Elements_Color to netCDF file failed: " + *newFileName);
316 int_ptr = &mesh->Elements->Color[0];
317 if (! (ids->put(int_ptr, num_Elements)) )
318 throw DataException("Error - MeshAdapter::dump: copy Elements_Color to netCDF buffer failed: " + *newFileName);
319
320 // Elements_Nodes
321 for (int i=0; i<num_Elements; i++)
322 for (int j=0; j<num_Elements_numNodes; j++)
323 Elements_Nodes[INDEX2(j,i,num_Elements_numNodes)] = mesh->Nodes->Id[mesh->Elements->Nodes[INDEX2(j,i,num_Elements_numNodes)]];
324 if (! ( ids = dataFile.add_var("Elements_Nodes", ncInt, ncdims[3], ncdims[7]) ) )
325 throw DataException("Error - MeshAdapter::dump: appending Elements_Nodes to netCDF file failed: " + *newFileName);
326 if (! (ids->put(&(Elements_Nodes[0]), num_Elements, num_Elements_numNodes)) )
327 throw DataException("Error - MeshAdapter::dump: copy Elements_Nodes to netCDF buffer failed: " + *newFileName);
328
329 TMPMEMFREE(Elements_Nodes);
330
331 }
332
333 // // // // // Face_Elements // // // // //
334
335 if (num_FaceElements>0) {
336
337 // Temp storage to gather node IDs
338 int *FaceElements_Nodes = TMPMEMALLOC(num_FaceElements*num_FaceElements_numNodes,int);
339
340 // FaceElements_Id
341 if (! ( ids = dataFile.add_var("FaceElements_Id", ncInt, ncdims[4])) )
342 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Id to netCDF file failed: " + *newFileName);
343 int_ptr = &mesh->FaceElements->Id[0];
344 if (! (ids->put(int_ptr, num_FaceElements)) )
345 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Id to netCDF buffer failed: " + *newFileName);
346
347 // FaceElements_Tag
348 if (! ( ids = dataFile.add_var("FaceElements_Tag", ncInt, ncdims[4])) )
349 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Tag to netCDF file failed: " + *newFileName);
350 int_ptr = &mesh->FaceElements->Tag[0];
351 if (! (ids->put(int_ptr, num_FaceElements)) )
352 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Tag to netCDF buffer failed: " + *newFileName);
353
354 // FaceElements_Owner
355 if (! ( ids = dataFile.add_var("FaceElements_Owner", ncInt, ncdims[4])) )
356 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Owner to netCDF file failed: " + *newFileName);
357 int_ptr = &mesh->FaceElements->Owner[0];
358 if (! (ids->put(int_ptr, num_FaceElements)) )
359 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Owner to netCDF buffer failed: " + *newFileName);
360
361 // FaceElements_Color
362 if (! ( ids = dataFile.add_var("FaceElements_Color", ncInt, ncdims[4])) )
363 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Color to netCDF file failed: " + *newFileName);
364 int_ptr = &mesh->FaceElements->Color[0];
365 if (! (ids->put(int_ptr, num_FaceElements)) )
366 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Color to netCDF buffer failed: " + *newFileName);
367
368 // FaceElements_Nodes
369 for (int i=0; i<num_FaceElements; i++)
370 for (int j=0; j<num_FaceElements_numNodes; j++)
371 FaceElements_Nodes[INDEX2(j,i,num_FaceElements_numNodes)] = mesh->Nodes->Id[mesh->FaceElements->Nodes[INDEX2(j,i,num_FaceElements_numNodes)]];
372 if (! ( ids = dataFile.add_var("FaceElements_Nodes", ncInt, ncdims[4], ncdims[8]) ) )
373 throw DataException("Error - MeshAdapter::dump: appending FaceElements_Nodes to netCDF file failed: " + *newFileName);
374 if (! (ids->put(&(FaceElements_Nodes[0]), num_FaceElements, num_FaceElements_numNodes)) )
375 throw DataException("Error - MeshAdapter::dump: copy FaceElements_Nodes to netCDF buffer failed: " + *newFileName);
376
377 TMPMEMFREE(FaceElements_Nodes);
378
379 }
380
381 // // // // // Contact_Elements // // // // //
382
383 if (num_ContactElements>0) {
384
385 // Temp storage to gather node IDs
386 int *ContactElements_Nodes = TMPMEMALLOC(num_ContactElements*num_ContactElements_numNodes,int);
387
388 // ContactElements_Id
389 if (! ( ids = dataFile.add_var("ContactElements_Id", ncInt, ncdims[5])) )
390 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Id to netCDF file failed: " + *newFileName);
391 int_ptr = &mesh->ContactElements->Id[0];
392 if (! (ids->put(int_ptr, num_ContactElements)) )
393 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Id to netCDF buffer failed: " + *newFileName);
394
395 // ContactElements_Tag
396 if (! ( ids = dataFile.add_var("ContactElements_Tag", ncInt, ncdims[5])) )
397 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Tag to netCDF file failed: " + *newFileName);
398 int_ptr = &mesh->ContactElements->Tag[0];
399 if (! (ids->put(int_ptr, num_ContactElements)) )
400 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Tag to netCDF buffer failed: " + *newFileName);
401
402 // ContactElements_Owner
403 if (! ( ids = dataFile.add_var("ContactElements_Owner", ncInt, ncdims[5])) )
404 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Owner to netCDF file failed: " + *newFileName);
405 int_ptr = &mesh->ContactElements->Owner[0];
406 if (! (ids->put(int_ptr, num_ContactElements)) )
407 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Owner to netCDF buffer failed: " + *newFileName);
408
409 // ContactElements_Color
410 if (! ( ids = dataFile.add_var("ContactElements_Color", ncInt, ncdims[5])) )
411 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Color to netCDF file failed: " + *newFileName);
412 int_ptr = &mesh->ContactElements->Color[0];
413 if (! (ids->put(int_ptr, num_ContactElements)) )
414 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Color to netCDF buffer failed: " + *newFileName);
415
416 // ContactElements_Nodes
417 for (int i=0; i<num_ContactElements; i++)
418 for (int j=0; j<num_ContactElements_numNodes; j++)
419 ContactElements_Nodes[INDEX2(j,i,num_ContactElements_numNodes)] = mesh->Nodes->Id[mesh->ContactElements->Nodes[INDEX2(j,i,num_ContactElements_numNodes)]];
420 if (! ( ids = dataFile.add_var("ContactElements_Nodes", ncInt, ncdims[5], ncdims[9]) ) )
421 throw DataException("Error - MeshAdapter::dump: appending ContactElements_Nodes to netCDF file failed: " + *newFileName);
422 if (! (ids->put(&(ContactElements_Nodes[0]), num_ContactElements, num_ContactElements_numNodes)) )
423 throw DataException("Error - MeshAdapter::dump: copy ContactElements_Nodes to netCDF buffer failed: " + *newFileName);
424
425 TMPMEMFREE(ContactElements_Nodes);
426
427 }
428
429 // // // // // Points // // // // //
430
431 if (num_Points>0) {
432
433 fprintf(stderr, "\n\n\nWARNING: MeshAdapter::dump has not been tested with Point elements\n\n\n");
434
435 // Temp storage to gather node IDs
436 int *Points_Nodes = TMPMEMALLOC(num_Points,int);
437
438 // Points_Id
439 if (! ( ids = dataFile.add_var("Points_Id", ncInt, ncdims[6])) )
440 throw DataException("Error - MeshAdapter::dump: appending Points_Id to netCDF file failed: " + *newFileName);
441 int_ptr = &mesh->Points->Id[0];
442 if (! (ids->put(int_ptr, num_Points)) )
443 throw DataException("Error - MeshAdapter::dump: copy Points_Id to netCDF buffer failed: " + *newFileName);
444
445 // Points_Tag
446 if (! ( ids = dataFile.add_var("Points_Tag", ncInt, ncdims[6])) )
447 throw DataException("Error - MeshAdapter::dump: appending Points_Tag to netCDF file failed: " + *newFileName);
448 int_ptr = &mesh->Points->Tag[0];
449 if (! (ids->put(int_ptr, num_Points)) )
450 throw DataException("Error - MeshAdapter::dump: copy Points_Tag to netCDF buffer failed: " + *newFileName);
451
452 // Points_Owner
453 if (! ( ids = dataFile.add_var("Points_Owner", ncInt, ncdims[6])) )
454 throw DataException("Error - MeshAdapter::dump: appending Points_Owner to netCDF file failed: " + *newFileName);
455 int_ptr = &mesh->Points->Owner[0];
456 if (! (ids->put(int_ptr, num_Points)) )
457 throw DataException("Error - MeshAdapter::dump: copy Points_Owner to netCDF buffer failed: " + *newFileName);
458
459 // Points_Color
460 if (! ( ids = dataFile.add_var("Points_Color", ncInt, ncdims[6])) )
461 throw DataException("Error - MeshAdapter::dump: appending Points_Color to netCDF file failed: " + *newFileName);
462 int_ptr = &mesh->Points->Color[0];
463 if (! (ids->put(int_ptr, num_Points)) )
464 throw DataException("Error - MeshAdapter::dump: copy Points_Color to netCDF buffer failed: " + *newFileName);
465
466 // Points_Nodes
467 // mesh->Nodes->Id[mesh->Points->Nodes[INDEX2(0,i,1)]]
468 for (int i=0; i<num_Points; i++)
469 Points_Nodes[i] = mesh->Nodes->Id[mesh->Points->Nodes[INDEX2(0,i,1)]];
470 if (! ( ids = dataFile.add_var("Points_Nodes", ncInt, ncdims[6]) ) )
471 throw DataException("Error - MeshAdapter::dump: appending Points_Nodes to netCDF file failed: " + *newFileName);
472 if (! (ids->put(&(Points_Nodes[0]), num_Points)) )
473 throw DataException("Error - MeshAdapter::dump: copy Points_Nodes to netCDF buffer failed: " + *newFileName);
474
475 TMPMEMFREE(Points_Nodes);
476
477 }
478
479 // // // // // TagMap // // // // //
480
481 if (num_Tags>0) {
482
483 // Temp storage to gather node IDs
484 int *Tags_keys = TMPMEMALLOC(num_Tags, int);
485 char name_temp[4096];
486
487 /* Copy tag data into temp arrays */
488 tag_map = mesh->TagMap;
489 if (tag_map) {
490 int i = 0;
491 while (tag_map) {
492 Tags_keys[i++] = tag_map->tag_key;
493 tag_map=tag_map->next;
494 }
495 }
496
497 // Tags_keys
498 if (! ( ids = dataFile.add_var("Tags_keys", ncInt, ncdims[10])) )
499 throw DataException("Error - MeshAdapter::dump: appending Tags_keys to netCDF file failed: " + *newFileName);
500 int_ptr = &Tags_keys[0];
501 if (! (ids->put(int_ptr, num_Tags)) )
502 throw DataException("Error - MeshAdapter::dump: copy Tags_keys to netCDF buffer failed: " + *newFileName);
503
504 // Tags_names_*
505 // This is an array of strings, it should be stored as an array but instead I have hacked in one attribute per string
506 // because the NetCDF manual doesn't tell how to do an array of strings
507 tag_map = mesh->TagMap;
508 if (tag_map) {
509 int i = 0;
510 while (tag_map) {
511 sprintf(name_temp, "Tags_name_%d", i);
512 if (!dataFile.add_att(name_temp, tag_map->name) )
513 throw DataException("Error - MeshAdapter::dump: appending Tags_names_ to NetCDF file failed: " + *newFileName);
514 tag_map=tag_map->next;
515 i++;
516 }
517 }
518
519 TMPMEMFREE(Tags_keys);
520
521 }
522
523
524 // NetCDF file is closed by destructor of NcFile object
525 #else
526 Finley_setError(IO_ERROR, "MeshAdapter::dump: not configured with NetCDF. Please contact your installation manager.");
527 #endif /* USE_NETCDF */
528 checkFinleyError();
529 }
530
531 string MeshAdapter::getDescription() const
532 {
533 return "FinleyMesh";
534 }
535
536 string MeshAdapter::functionSpaceTypeAsString(int functionSpaceType) const
537 {
538 FunctionSpaceNamesMapType::iterator loc;
539 loc=m_functionSpaceTypeNames.find(functionSpaceType);
540 if (loc==m_functionSpaceTypeNames.end()) {
541 return "Invalid function space type code.";
542 } else {
543 return loc->second;
544 }
545 }
546
547 bool MeshAdapter::isValidFunctionSpaceType(int functionSpaceType) const
548 {
549 FunctionSpaceNamesMapType::iterator loc;
550 loc=m_functionSpaceTypeNames.find(functionSpaceType);
551 return (loc!=m_functionSpaceTypeNames.end());
552 }
553
554 void MeshAdapter::setFunctionSpaceTypeNames()
555 {
556 m_functionSpaceTypeNames.insert
557 (FunctionSpaceNamesMapType::value_type(DegreesOfFreedom,"Finley_DegreesOfFreedom"));
558 m_functionSpaceTypeNames.insert
559 (FunctionSpaceNamesMapType::value_type(ReducedDegreesOfFreedom,"Finley_ReducedDegreesOfFreedom"));
560 m_functionSpaceTypeNames.insert
561 (FunctionSpaceNamesMapType::value_type(Nodes,"Finley_Nodes"));
562 m_functionSpaceTypeNames.insert
563 (FunctionSpaceNamesMapType::value_type(ReducedNodes,"Finley_Reduced_Nodes"));
564 m_functionSpaceTypeNames.insert
565 (FunctionSpaceNamesMapType::value_type(Elements,"Finley_Elements"));
566 m_functionSpaceTypeNames.insert
567 (FunctionSpaceNamesMapType::value_type(ReducedElements,"Finley_Reduced_Elements"));
568 m_functionSpaceTypeNames.insert
569 (FunctionSpaceNamesMapType::value_type(FaceElements,"Finley_Face_Elements"));
570 m_functionSpaceTypeNames.insert
571 (FunctionSpaceNamesMapType::value_type(ReducedFaceElements,"Finley_Reduced_Face_Elements"));
572 m_functionSpaceTypeNames.insert
573 (FunctionSpaceNamesMapType::value_type(Points,"Finley_Points"));
574 m_functionSpaceTypeNames.insert
575 (FunctionSpaceNamesMapType::value_type(ContactElementsZero,"Finley_Contact_Elements_0"));
576 m_functionSpaceTypeNames.insert
577 (FunctionSpaceNamesMapType::value_type(ReducedContactElementsZero,"Finley_Reduced_Contact_Elements_0"));
578 m_functionSpaceTypeNames.insert
579 (FunctionSpaceNamesMapType::value_type(ContactElementsOne,"Finley_Contact_Elements_1"));
580 m_functionSpaceTypeNames.insert
581 (FunctionSpaceNamesMapType::value_type(ReducedContactElementsOne,"Finley_Reduced_Contact_Elements_1"));
582 }
583
584 int MeshAdapter::getContinuousFunctionCode() const
585 {
586 return Nodes;
587 }
588 int MeshAdapter::getReducedContinuousFunctionCode() const
589 {
590 return ReducedNodes;
591 }
592
593 int MeshAdapter::getFunctionCode() const
594 {
595 return Elements;
596 }
597 int MeshAdapter::getReducedFunctionCode() const
598 {
599 return ReducedElements;
600 }
601
602 int MeshAdapter::getFunctionOnBoundaryCode() const
603 {
604 return FaceElements;
605 }
606 int MeshAdapter::getReducedFunctionOnBoundaryCode() const
607 {
608 return ReducedFaceElements;
609 }
610
611 int MeshAdapter::getFunctionOnContactZeroCode() const
612 {
613 return ContactElementsZero;
614 }
615 int MeshAdapter::getReducedFunctionOnContactZeroCode() const
616 {
617 return ReducedContactElementsZero;
618 }
619
620 int MeshAdapter::getFunctionOnContactOneCode() const
621 {
622 return ContactElementsOne;
623 }
624 int MeshAdapter::getReducedFunctionOnContactOneCode() const
625 {
626 return ReducedContactElementsOne;
627 }
628
629 int MeshAdapter::getSolutionCode() const
630 {
631 return DegreesOfFreedom;
632 }
633
634 int MeshAdapter::getReducedSolutionCode() const
635 {
636 return ReducedDegreesOfFreedom;
637 }
638
639 int MeshAdapter::getDiracDeltaFunctionCode() const
640 {
641 return Points;
642 }
643
644 //
645 // return the spatial dimension of the Mesh:
646 //
647 int MeshAdapter::getDim() const
648 {
649 int numDim=Finley_Mesh_getDim(m_finleyMesh.get());
650 checkFinleyError();
651 return numDim;
652 }
653
654 //
655 // return the number of data points per sample and the number of samples
656 // needed to represent data on a parts of the mesh.
657 //
658 pair<int,int> MeshAdapter::getDataShape(int functionSpaceCode) const
659 {
660 int numDataPointsPerSample=0;
661 int numSamples=0;
662 Finley_Mesh* mesh=m_finleyMesh.get();
663 switch (functionSpaceCode) {
664 case(Nodes):
665 numDataPointsPerSample=1;
666 numSamples=Finley_NodeFile_getNumNodes(mesh->Nodes);
667 break;
668 case(ReducedNodes):
669 numDataPointsPerSample=1;
670 numSamples=Finley_NodeFile_getNumReducedNodes(mesh->Nodes);
671 break;
672 case(Elements):
673 if (mesh->Elements!=NULL) {
674 numSamples=mesh->Elements->numElements;
675 numDataPointsPerSample=mesh->Elements->ReferenceElement->numQuadNodes;
676 }
677 break;
678 case(ReducedElements):
679 if (mesh->Elements!=NULL) {
680 numSamples=mesh->Elements->numElements;
681 numDataPointsPerSample=mesh->Elements->ReferenceElementReducedOrder->numQuadNodes;
682 }
683 break;
684 case(FaceElements):
685 if (mesh->FaceElements!=NULL) {
686 numDataPointsPerSample=mesh->FaceElements->ReferenceElement->numQuadNodes;
687 numSamples=mesh->FaceElements->numElements;
688 }
689 break;
690 case(ReducedFaceElements):
691 if (mesh->FaceElements!=NULL) {
692 numDataPointsPerSample=mesh->FaceElements->ReferenceElementReducedOrder->numQuadNodes;
693 numSamples=mesh->FaceElements->numElements;
694 }
695 break;
696 case(Points):
697 if (mesh->Points!=NULL) {
698 numDataPointsPerSample=1;
699 numSamples=mesh->Points->numElements;
700 }
701 break;
702 case(ContactElementsZero):
703 if (mesh->ContactElements!=NULL) {
704 numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes;
705 numSamples=mesh->ContactElements->numElements;
706 }
707 break;
708 case(ReducedContactElementsZero):
709 if (mesh->ContactElements!=NULL) {
710 numDataPointsPerSample=mesh->ContactElements->ReferenceElementReducedOrder->numQuadNodes;
711 numSamples=mesh->ContactElements->numElements;
712 }
713 break;
714 case(ContactElementsOne):
715 if (mesh->ContactElements!=NULL) {
716 numDataPointsPerSample=mesh->ContactElements->ReferenceElement->numQuadNodes;
717 numSamples=mesh->ContactElements->numElements;
718 }
719 break;
720 case(ReducedContactElementsOne):
721 if (mesh->ContactElements!=NULL) {
722 numDataPointsPerSample=mesh->ContactElements->ReferenceElementReducedOrder->numQuadNodes;
723 numSamples=mesh->ContactElements->numElements;
724 }
725 break;
726 case(DegreesOfFreedom):
727 if (mesh->Nodes!=NULL) {
728 numDataPointsPerSample=1;
729 numSamples=Finley_NodeFile_getNumDegreesOfFreedom(mesh->Nodes);
730 }
731 break;
732 case(ReducedDegreesOfFreedom):
733 if (mesh->Nodes!=NULL) {
734 numDataPointsPerSample=1;
735 numSamples=Finley_NodeFile_getNumReducedDegreesOfFreedom(mesh->Nodes);
736 }
737 break;
738 default:
739 stringstream temp;
740 temp << "Error - Invalid function space type: " << functionSpaceCode << " for domain: " << getDescription();
741 throw FinleyAdapterException(temp.str());
742 break;
743 }
744 return pair<int,int>(numDataPointsPerSample,numSamples);
745 }
746
747 //
748 // adds linear PDE of second order into a given stiffness matrix and right hand side:
749 //
750 void MeshAdapter::addPDEToSystem(
751 SystemMatrixAdapter& mat, escript::Data& rhs,
752 const escript::Data& A, const escript::Data& B, const escript::Data& C,const escript::Data& D,const escript::Data& X,const escript::Data& Y,
753 const escript::Data& d, const escript::Data& y,
754 const escript::Data& d_contact,const escript::Data& y_contact) const
755 {
756 escriptDataC _rhs=rhs.getDataC();
757 escriptDataC _A =A.getDataC();
758 escriptDataC _B=B.getDataC();
759 escriptDataC _C=C.getDataC();
760 escriptDataC _D=D.getDataC();
761 escriptDataC _X=X.getDataC();
762 escriptDataC _Y=Y.getDataC();
763 escriptDataC _d=d.getDataC();
764 escriptDataC _y=y.getDataC();
765 escriptDataC _d_contact=d_contact.getDataC();
766 escriptDataC _y_contact=y_contact.getDataC();
767
768 Finley_Mesh* mesh=m_finleyMesh.get();
769
770 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,mat.getPaso_SystemMatrix(), &_rhs, &_A, &_B, &_C, &_D, &_X, &_Y );
771 checkFinleyError();
772
773 Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, mat.getPaso_SystemMatrix(), &_rhs, 0, 0, 0, &_d, 0, &_y );
774 checkFinleyError();
775
776 Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, mat.getPaso_SystemMatrix(), &_rhs , 0, 0, 0, &_d_contact, 0, &_y_contact );
777 checkFinleyError();
778 }
779
780 void MeshAdapter::addPDEToLumpedSystem(
781 escript::Data& mat,
782 const escript::Data& D,
783 const escript::Data& d) const
784 {
785 escriptDataC _mat=mat.getDataC();
786 escriptDataC _D=D.getDataC();
787 escriptDataC _d=d.getDataC();
788
789 Finley_Mesh* mesh=m_finleyMesh.get();
790
791 Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->Elements,&_mat, &_D);
792 Finley_Assemble_LumpedSystem(mesh->Nodes,mesh->FaceElements,&_mat, &_d);
793
794 checkFinleyError();
795 }
796
797
798 //
799 // adds linear PDE of second order into the right hand side only
800 //
801 void MeshAdapter::addPDEToRHS( escript::Data& rhs, const escript::Data& X,const escript::Data& Y, const escript::Data& y, const escript::Data& y_contact) const
802 {
803 Finley_Mesh* mesh=m_finleyMesh.get();
804
805 escriptDataC _rhs=rhs.getDataC();
806 escriptDataC _X=X.getDataC();
807 escriptDataC _Y=Y.getDataC();
808 escriptDataC _y=y.getDataC();
809 escriptDataC _y_contact=y_contact.getDataC();
810
811 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements, 0, &_rhs, 0, 0, 0, 0, &_X, &_Y );
812 checkFinleyError();
813
814 Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, 0, &_rhs, 0, 0, 0, 0, 0, &_y );
815 checkFinleyError();
816
817 Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, 0, &_rhs , 0, 0, 0, 0, 0, &_y_contact );
818 checkFinleyError();
819 }
820 //
821 // adds PDE of second order into a transport problem
822 //
823 void MeshAdapter::addPDEToTransportProblem(
824 TransportProblemAdapter& tp, escript::Data& source, const escript::Data& M,
825 const escript::Data& A, const escript::Data& B, const escript::Data& C,
826 const escript::Data& D,const escript::Data& X,const escript::Data& Y,
827 const escript::Data& d, const escript::Data& y,
828 const escript::Data& d_contact,const escript::Data& y_contact) const
829 {
830 DataArrayView::ShapeType shape;
831 source.expand();
832 escriptDataC _source=source.getDataC();
833 escriptDataC _M=M.getDataC();
834 escriptDataC _A=A.getDataC();
835 escriptDataC _B=B.getDataC();
836 escriptDataC _C=C.getDataC();
837 escriptDataC _D=D.getDataC();
838 escriptDataC _X=X.getDataC();
839 escriptDataC _Y=Y.getDataC();
840 escriptDataC _d=d.getDataC();
841 escriptDataC _y=y.getDataC();
842 escriptDataC _d_contact=d_contact.getDataC();
843 escriptDataC _y_contact=y_contact.getDataC();
844
845 Finley_Mesh* mesh=m_finleyMesh.get();
846 Paso_FCTransportProblem* _tp = tp.getPaso_FCTransportProblem();
847
848 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,_tp->mass_matrix, &_source, 0, 0, 0, &_M, 0, 0 );
849 checkFinleyError();
850
851 Finley_Assemble_PDE(mesh->Nodes,mesh->Elements,_tp->transport_matrix, &_source, &_A, &_B, &_C, &_D, &_X, &_Y );
852 checkFinleyError();
853
854 Finley_Assemble_PDE(mesh->Nodes,mesh->FaceElements, _tp->transport_matrix, &_source, 0, 0, 0, &_d, 0, &_y );
855 checkFinleyError();
856
857 Finley_Assemble_PDE(mesh->Nodes,mesh->ContactElements, _tp->transport_matrix, &_source , 0, 0, 0, &_d_contact, 0, &_y_contact );
858 checkFinleyError();
859 }
860
861 //
862 // interpolates data between different function spaces:
863 //
864 void MeshAdapter::interpolateOnDomain(escript::Data& target,const escript::Data& in) const
865 {
866 const MeshAdapter& inDomain=dynamic_cast<const MeshAdapter&>(in.getFunctionSpace().getDomain());
867 const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain());
868 if (inDomain!=*this)
869 throw FinleyAdapterException("Error - Illegal domain of interpolant.");
870 if (targetDomain!=*this)
871 throw FinleyAdapterException("Error - Illegal domain of interpolation target.");
872
873 Finley_Mesh* mesh=m_finleyMesh.get();
874 escriptDataC _target=target.getDataC();
875 escriptDataC _in=in.getDataC();
876 switch(in.getFunctionSpace().getTypeCode()) {
877 case(Nodes):
878 switch(target.getFunctionSpace().getTypeCode()) {
879 case(Nodes):
880 case(ReducedNodes):
881 case(DegreesOfFreedom):
882 case(ReducedDegreesOfFreedom):
883 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
884 break;
885 case(Elements):
886 case(ReducedElements):
887 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
888 break;
889 case(FaceElements):
890 case(ReducedFaceElements):
891 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
892 break;
893 case(Points):
894 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
895 break;
896 case(ContactElementsZero):
897 case(ReducedContactElementsZero):
898 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
899 break;
900 case(ContactElementsOne):
901 case(ReducedContactElementsOne):
902 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
903 break;
904 default:
905 stringstream temp;
906 temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
907 throw FinleyAdapterException(temp.str());
908 break;
909 }
910 break;
911 case(ReducedNodes):
912 switch(target.getFunctionSpace().getTypeCode()) {
913 case(Nodes):
914 case(ReducedNodes):
915 case(DegreesOfFreedom):
916 case(ReducedDegreesOfFreedom):
917 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
918 break;
919 case(Elements):
920 case(ReducedElements):
921 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
922 break;
923 case(FaceElements):
924 case(ReducedFaceElements):
925 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
926 break;
927 case(Points):
928 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
929 break;
930 case(ContactElementsZero):
931 case(ReducedContactElementsZero):
932 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
933 break;
934 case(ContactElementsOne):
935 case(ReducedContactElementsOne):
936 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
937 break;
938 default:
939 stringstream temp;
940 temp << "Error - Interpolation on Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
941 throw FinleyAdapterException(temp.str());
942 break;
943 }
944 break;
945 case(Elements):
946 if (target.getFunctionSpace().getTypeCode()==Elements) {
947 Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
948 } else if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
949 Finley_Assemble_AverageElementData(mesh->Elements,&_target,&_in);
950 } else {
951 throw FinleyAdapterException("Error - No interpolation with data on elements possible.");
952 }
953 break;
954 case(ReducedElements):
955 if (target.getFunctionSpace().getTypeCode()==ReducedElements) {
956 Finley_Assemble_CopyElementData(mesh->Elements,&_target,&_in);
957 } else {
958 throw FinleyAdapterException("Error - No interpolation with data on elements with reduced integration order possible.");
959 }
960 break;
961 case(FaceElements):
962 if (target.getFunctionSpace().getTypeCode()==FaceElements) {
963 Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
964 } else if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {
965 Finley_Assemble_AverageElementData(mesh->FaceElements,&_target,&_in);
966 } else {
967 throw FinleyAdapterException("Error - No interpolation with data on face elements possible.");
968 }
969 break;
970 case(ReducedFaceElements):
971 if (target.getFunctionSpace().getTypeCode()==ReducedFaceElements) {
972 Finley_Assemble_CopyElementData(mesh->FaceElements,&_target,&_in);
973 } else {
974 throw FinleyAdapterException("Error - No interpolation with data on face elements with reduced integration order possible.");
975 }
976 break;
977 case(Points):
978 if (target.getFunctionSpace().getTypeCode()==Points) {
979 Finley_Assemble_CopyElementData(mesh->Points,&_target,&_in);
980 } else {
981 throw FinleyAdapterException("Error - No interpolation with data on points possible.");
982 }
983 break;
984 case(ContactElementsZero):
985 case(ContactElementsOne):
986 if (target.getFunctionSpace().getTypeCode()==ContactElementsZero || target.getFunctionSpace().getTypeCode()==ContactElementsOne) {
987 Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
988 } else if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
989 Finley_Assemble_AverageElementData(mesh->ContactElements,&_target,&_in);
990 } else {
991 throw FinleyAdapterException("Error - No interpolation with data on contact elements possible.");
992 }
993 break;
994 case(ReducedContactElementsZero):
995 case(ReducedContactElementsOne):
996 if (target.getFunctionSpace().getTypeCode()==ReducedContactElementsZero || target.getFunctionSpace().getTypeCode()==ReducedContactElementsOne) {
997 Finley_Assemble_CopyElementData(mesh->ContactElements,&_target,&_in);
998 } else {
999 throw FinleyAdapterException("Error - No interpolation with data on contact elements with reduced integration order possible.");
1000 }
1001 break;
1002 case(DegreesOfFreedom):
1003 switch(target.getFunctionSpace().getTypeCode()) {
1004 case(ReducedDegreesOfFreedom):
1005 case(DegreesOfFreedom):
1006 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1007 break;
1008
1009 case(Nodes):
1010 case(ReducedNodes):
1011 if (getMPISize()>1) {
1012 escript::Data temp=escript::Data(in);
1013 temp.expand();
1014 escriptDataC _in2 = temp.getDataC();
1015 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1016 } else {
1017 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1018 }
1019 break;
1020 case(Elements):
1021 case(ReducedElements):
1022 if (getMPISize()>1) {
1023 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1024 escriptDataC _in2 = temp.getDataC();
1025 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1026 } else {
1027 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1028 }
1029 break;
1030 case(FaceElements):
1031 case(ReducedFaceElements):
1032 if (getMPISize()>1) {
1033 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1034 escriptDataC _in2 = temp.getDataC();
1035 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1036
1037 } else {
1038 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1039 }
1040 break;
1041 case(Points):
1042 if (getMPISize()>1) {
1043 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1044 escriptDataC _in2 = temp.getDataC();
1045 } else {
1046 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1047 }
1048 break;
1049 case(ContactElementsZero):
1050 case(ContactElementsOne):
1051 case(ReducedContactElementsZero):
1052 case(ReducedContactElementsOne):
1053 if (getMPISize()>1) {
1054 escript::Data temp=escript::Data( in, continuousFunction(asAbstractContinuousDomain()) );
1055 escriptDataC _in2 = temp.getDataC();
1056 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1057 } else {
1058 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1059 }
1060 break;
1061 default:
1062 stringstream temp;
1063 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1064 throw FinleyAdapterException(temp.str());
1065 break;
1066 }
1067 break;
1068 case(ReducedDegreesOfFreedom):
1069 switch(target.getFunctionSpace().getTypeCode()) {
1070 case(Nodes):
1071 throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to mesh nodes.");
1072 break;
1073 case(ReducedNodes):
1074 if (getMPISize()>1) {
1075 escript::Data temp=escript::Data(in);
1076 temp.expand();
1077 escriptDataC _in2 = temp.getDataC();
1078 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in2);
1079 } else {
1080 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1081 }
1082 break;
1083 case(DegreesOfFreedom):
1084 throw FinleyAdapterException("Error - Finley does not support interpolation from reduced degrees of freedom to degrees of freedom");
1085 break;
1086 case(ReducedDegreesOfFreedom):
1087 Finley_Assemble_CopyNodalData(mesh->Nodes,&_target,&_in);
1088 break;
1089 case(Elements):
1090 case(ReducedElements):
1091 if (getMPISize()>1) {
1092 escript::Data temp=escript::Data( in, reducedContinuousFunction(asAbstractContinuousDomain()) );
1093 escriptDataC _in2 = temp.getDataC();
1094 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in2,&_target);
1095 } else {
1096 Finley_Assemble_interpolate(mesh->Nodes,mesh->Elements,&_in,&_target);
1097 }
1098 break;
1099 case(FaceElements):
1100 case(ReducedFaceElements):
1101 if (getMPISize()>1) {
1102 escript::Data temp=escript::Data( in, reducedContinuousFunction(asAbstractContinuousDomain()) );
1103 escriptDataC _in2 = temp.getDataC();
1104 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in2,&_target);
1105 } else {
1106 Finley_Assemble_interpolate(mesh->Nodes,mesh->FaceElements,&_in,&_target);
1107 }
1108 break;
1109 case(Points):
1110 if (getMPISize()>1) {
1111 escript::Data temp=escript::Data( in, reducedContinuousFunction(asAbstractContinuousDomain()) );
1112 escriptDataC _in2 = temp.getDataC();
1113 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in2,&_target);
1114 } else {
1115 Finley_Assemble_interpolate(mesh->Nodes,mesh->Points,&_in,&_target);
1116 }
1117 break;
1118 case(ContactElementsZero):
1119 case(ContactElementsOne):
1120 case(ReducedContactElementsZero):
1121 case(ReducedContactElementsOne):
1122 if (getMPISize()>1) {
1123 escript::Data temp=escript::Data( in, reducedContinuousFunction(asAbstractContinuousDomain()) );
1124 escriptDataC _in2 = temp.getDataC();
1125 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in2,&_target);
1126 } else {
1127 Finley_Assemble_interpolate(mesh->Nodes,mesh->ContactElements,&_in,&_target);
1128 }
1129 break;
1130 default:
1131 stringstream temp;
1132 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << target.getFunctionSpace().getTypeCode();
1133 throw FinleyAdapterException(temp.str());
1134 break;
1135 }
1136 break;
1137 default:
1138 stringstream temp;
1139 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type %d" << in.getFunctionSpace().getTypeCode();
1140 throw FinleyAdapterException(temp.str());
1141 break;
1142 }
1143 checkFinleyError();
1144 }
1145
1146 //
1147 // copies the locations of sample points into x:
1148 //
1149 void MeshAdapter::setToX(escript::Data& arg) const
1150 {
1151 const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());
1152 if (argDomain!=*this)
1153 throw FinleyAdapterException("Error - Illegal domain of data point locations");
1154 Finley_Mesh* mesh=m_finleyMesh.get();
1155 // in case of values node coordinates we can do the job directly:
1156 if (arg.getFunctionSpace().getTypeCode()==Nodes) {
1157 escriptDataC _arg=arg.getDataC();
1158 Finley_Assemble_NodeCoordinates(mesh->Nodes,&_arg);
1159 } else {
1160 escript::Data tmp_data=Vector(0.0,continuousFunction(asAbstractContinuousDomain()),true);
1161 escriptDataC _tmp_data=tmp_data.getDataC();
1162 Finley_Assemble_NodeCoordinates(mesh->Nodes,&_tmp_data);
1163 // this is then interpolated onto arg:
1164 interpolateOnDomain(arg,tmp_data);
1165 }
1166 checkFinleyError();
1167 }
1168
1169 //
1170 // return the normal vectors at the location of data points as a Data object:
1171 //
1172 void MeshAdapter::setToNormal(escript::Data& normal) const
1173 {
1174 const MeshAdapter& normalDomain=dynamic_cast<const MeshAdapter&>(normal.getFunctionSpace().getDomain());
1175 if (normalDomain!=*this)
1176 throw FinleyAdapterException("Error - Illegal domain of normal locations");
1177 Finley_Mesh* mesh=m_finleyMesh.get();
1178 escriptDataC _normal=normal.getDataC();
1179 switch(normal.getFunctionSpace().getTypeCode()) {
1180 case(Nodes):
1181 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for nodes");
1182 break;
1183 case(ReducedNodes):
1184 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced nodes");
1185 break;
1186 case(Elements):
1187 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements");
1188 break;
1189 case(ReducedElements):
1190 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for elements with reduced integration order");
1191 break;
1192 case (FaceElements):
1193 Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&_normal);
1194 break;
1195 case (ReducedFaceElements):
1196 Finley_Assemble_setNormal(mesh->Nodes,mesh->FaceElements,&_normal);
1197 break;
1198 case(Points):
1199 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for point elements");
1200 break;
1201 case (ContactElementsOne):
1202 case (ContactElementsZero):
1203 Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&_normal);
1204 break;
1205 case (ReducedContactElementsOne):
1206 case (ReducedContactElementsZero):
1207 Finley_Assemble_setNormal(mesh->Nodes,mesh->ContactElements,&_normal);
1208 break;
1209 case(DegreesOfFreedom):
1210 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for degrees of freedom.");
1211 break;
1212 case(ReducedDegreesOfFreedom):
1213 throw FinleyAdapterException("Error - Finley does not support surface normal vectors for reduced degrees of freedom.");
1214 break;
1215 default:
1216 stringstream temp;
1217 temp << "Error - Normal Vectors: Finley does not know anything about function space type " << normal.getFunctionSpace().getTypeCode();
1218 throw FinleyAdapterException(temp.str());
1219 break;
1220 }
1221 checkFinleyError();
1222 }
1223
1224 //
1225 // interpolates data to other domain:
1226 //
1227 void MeshAdapter::interpolateACross(escript::Data& target,const escript::Data& source) const
1228 {
1229 const MeshAdapter& targetDomain=dynamic_cast<const MeshAdapter&>(target.getFunctionSpace().getDomain());
1230 if (targetDomain!=*this)
1231 throw FinleyAdapterException("Error - Illegal domain of interpolation target");
1232
1233 throw FinleyAdapterException("Error - Finley does not allow interpolation across domains yet.");
1234 }
1235
1236 //
1237 // calculates the integral of a function defined of arg:
1238 //
1239 void MeshAdapter::setToIntegrals(std::vector<double>& integrals,const escript::Data& arg) const
1240 {
1241 const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());
1242 if (argDomain!=*this)
1243 throw FinleyAdapterException("Error - Illegal domain of integration kernel");
1244
1245 double blocktimer_start = blocktimer_time();
1246 Finley_Mesh* mesh=m_finleyMesh.get();
1247 escriptDataC _temp;
1248 escript::Data temp;
1249 escriptDataC _arg=arg.getDataC();
1250 switch(arg.getFunctionSpace().getTypeCode()) {
1251 case(Nodes):
1252 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1253 _temp=temp.getDataC();
1254 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1255 break;
1256 case(ReducedNodes):
1257 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1258 _temp=temp.getDataC();
1259 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1260 break;
1261 case(Elements):
1262 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_arg,&integrals[0]);
1263 break;
1264 case(ReducedElements):
1265 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_arg,&integrals[0]);
1266 break;
1267 case(FaceElements):
1268 Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&_arg,&integrals[0]);
1269 break;
1270 case(ReducedFaceElements):
1271 Finley_Assemble_integrate(mesh->Nodes,mesh->FaceElements,&_arg,&integrals[0]);
1272 break;
1273 case(Points):
1274 throw FinleyAdapterException("Error - Integral of data on points is not supported.");
1275 break;
1276 case(ContactElementsZero):
1277 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1278 break;
1279 case(ReducedContactElementsZero):
1280 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1281 break;
1282 case(ContactElementsOne):
1283 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1284 break;
1285 case(ReducedContactElementsOne):
1286 Finley_Assemble_integrate(mesh->Nodes,mesh->ContactElements,&_arg,&integrals[0]);
1287 break;
1288 case(DegreesOfFreedom):
1289 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1290 _temp=temp.getDataC();
1291 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1292 break;
1293 case(ReducedDegreesOfFreedom):
1294 temp=escript::Data( arg, function(asAbstractContinuousDomain()) );
1295 _temp=temp.getDataC();
1296 Finley_Assemble_integrate(mesh->Nodes,mesh->Elements,&_temp,&integrals[0]);
1297 break;
1298 default:
1299 stringstream temp;
1300 temp << "Error - Integrals: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();
1301 throw FinleyAdapterException(temp.str());
1302 break;
1303 }
1304 checkFinleyError();
1305 blocktimer_increment("integrate()", blocktimer_start);
1306 }
1307
1308 //
1309 // calculates the gradient of arg:
1310 //
1311 void MeshAdapter::setToGradient(escript::Data& grad,const escript::Data& arg) const
1312 {
1313 const MeshAdapter& argDomain=dynamic_cast<const MeshAdapter&>(arg.getFunctionSpace().getDomain());
1314 if (argDomain!=*this)
1315 throw FinleyAdapterException("Error - Illegal domain of gradient argument");
1316 const MeshAdapter& gradDomain=dynamic_cast<const MeshAdapter&>(grad.getFunctionSpace().getDomain());
1317 if (gradDomain!=*this)
1318 throw FinleyAdapterException("Error - Illegal domain of gradient");
1319
1320 Finley_Mesh* mesh=m_finleyMesh.get();
1321 escriptDataC _grad=grad.getDataC();
1322 escriptDataC nodeDataC;
1323 escript::Data temp;
1324 if (getMPISize()>1) {
1325 if( arg.getFunctionSpace().getTypeCode() == DegreesOfFreedom ) {
1326 temp=escript::Data( arg, continuousFunction(asAbstractContinuousDomain()) );
1327 nodeDataC = temp.getDataC();
1328 } else if( arg.getFunctionSpace().getTypeCode() == ReducedDegreesOfFreedom ) {
1329 temp=escript::Data( arg, reducedContinuousFunction(asAbstractContinuousDomain()) );
1330 nodeDataC = temp.getDataC();
1331 } else {
1332 nodeDataC = arg.getDataC();
1333 }
1334 } else {
1335 nodeDataC = arg.getDataC();
1336 }
1337 switch(grad.getFunctionSpace().getTypeCode()) {
1338 case(Nodes):
1339 throw FinleyAdapterException("Error - Gradient at nodes is not supported.");
1340 break;
1341 case(ReducedNodes):
1342 throw FinleyAdapterException("Error - Gradient at reduced nodes is not supported.");
1343 break;
1344 case(Elements):
1345 Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&_grad,&nodeDataC);
1346 break;
1347 case(ReducedElements):
1348 Finley_Assemble_gradient(mesh->Nodes,mesh->Elements,&_grad,&nodeDataC);
1349 break;
1350 case(FaceElements):
1351 Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&_grad,&nodeDataC);
1352 break;
1353 case(ReducedFaceElements):
1354 Finley_Assemble_gradient(mesh->Nodes,mesh->FaceElements,&_grad,&nodeDataC);
1355 break;
1356 case(Points):
1357 throw FinleyAdapterException("Error - Gradient at points is not supported.");
1358 break;
1359 case(ContactElementsZero):
1360 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1361 break;
1362 case(ReducedContactElementsZero):
1363 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1364 break;
1365 case(ContactElementsOne):
1366 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1367 break;
1368 case(ReducedContactElementsOne):
1369 Finley_Assemble_gradient(mesh->Nodes,mesh->ContactElements,&_grad,&nodeDataC);
1370 break;
1371 case(DegreesOfFreedom):
1372 throw FinleyAdapterException("Error - Gradient at degrees of freedom is not supported.");
1373 break;
1374 case(ReducedDegreesOfFreedom):
1375 throw FinleyAdapterException("Error - Gradient at reduced degrees of freedom is not supported.");
1376 break;
1377 default:
1378 stringstream temp;
1379 temp << "Error - Gradient: Finley does not know anything about function space type " << arg.getFunctionSpace().getTypeCode();
1380 throw FinleyAdapterException(temp.str());
1381 break;
1382 }
1383 checkFinleyError();
1384 }
1385
1386 //
1387 // returns the size of elements:
1388 //
1389 void MeshAdapter::setToSize(escript::Data& size) const
1390 {
1391 Finley_Mesh* mesh=m_finleyMesh.get();
1392 escriptDataC tmp=size.getDataC();
1393 switch(size.getFunctionSpace().getTypeCode()) {
1394 case(Nodes):
1395 throw FinleyAdapterException("Error - Size of nodes is not supported.");
1396 break;
1397 case(ReducedNodes):
1398 throw FinleyAdapterException("Error - Size of reduced nodes is not supported.");
1399 break;
1400 case(Elements):
1401 Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);
1402 break;
1403 case(ReducedElements):
1404 Finley_Assemble_getSize(mesh->Nodes,mesh->Elements,&tmp);
1405 break;
1406 case(FaceElements):
1407 Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);
1408 break;
1409 case(ReducedFaceElements):
1410 Finley_Assemble_getSize(mesh->Nodes,mesh->FaceElements,&tmp);
1411 break;
1412 case(Points):
1413 throw FinleyAdapterException("Error - Size of point elements is not supported.");
1414 break;
1415 case(ContactElementsZero):
1416 case(ContactElementsOne):
1417 Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);
1418 break;
1419 case(ReducedContactElementsZero):
1420 case(ReducedContactElementsOne):
1421 Finley_Assemble_getSize(mesh->Nodes,mesh->ContactElements,&tmp);
1422 break;
1423 case(DegreesOfFreedom):
1424 throw FinleyAdapterException("Error - Size of degrees of freedom is not supported.");
1425 break;
1426 case(ReducedDegreesOfFreedom):
1427 throw FinleyAdapterException("Error - Size of reduced degrees of freedom is not supported.");
1428 break;
1429 default:
1430 stringstream temp;
1431 temp << "Error - Element size: Finley does not know anything about function space type " << size.getFunctionSpace().getTypeCode();
1432 throw FinleyAdapterException(temp.str());
1433 break;
1434 }
1435 checkFinleyError();
1436 }
1437
1438 // sets the location of nodes:
1439 void MeshAdapter::setNewX(const escript::Data& new_x)
1440 {
1441 Finley_Mesh* mesh=m_finleyMesh.get();
1442 escriptDataC tmp;
1443 const MeshAdapter& newDomain=dynamic_cast<const MeshAdapter&>(new_x.getFunctionSpace().getDomain());
1444 if (newDomain!=*this)
1445 throw FinleyAdapterException("Error - Illegal domain of new point locations");
1446 tmp = new_x.getDataC();
1447 Finley_Mesh_setCoordinates(mesh,&tmp);
1448 checkFinleyError();
1449 }
1450
1451 // saves a data array in openDX format:
1452 void MeshAdapter::saveDX(const std::string& filename,const boost::python::dict& arg) const
1453 {
1454 unsigned int MAX_namelength=IS_THERE_A_REASON_FOR_THIS_MAGIC_NAME_LENGTH;
1455 const int num_data=boost::python::extract<int>(arg.attr("__len__")());
1456 /* win32 refactor */
1457 char* *names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1458 for(int i=0;i<num_data;i++)
1459 {
1460 names[i] = (MAX_namelength>0) ? TMPMEMALLOC(MAX_namelength,char) : (char*)NULL;
1461 }
1462
1463 escriptDataC *data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC) : (escriptDataC*)NULL;
1464 escriptDataC* *ptr_data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC*) : (escriptDataC**)NULL;
1465
1466 boost::python::list keys=arg.keys();
1467 for (int i=0;i<num_data;++i) {
1468 std::string n=boost::python::extract<std::string>(keys[i]);
1469 escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]);
1470 if (dynamic_cast<const MeshAdapter&>(d.getFunctionSpace().getDomain()) !=*this)
1471 throw FinleyAdapterException("Error in saveVTK: Data must be defined on same Domain");
1472 data[i]=d.getDataC();
1473 ptr_data[i]= &(data[i]);
1474 if (n.length()>MAX_namelength-1) {
1475 strncpy(names[i],n.c_str(),MAX_namelength-1);
1476 names[i][MAX_namelength-1]='\0';
1477 } else {
1478 strcpy(names[i],n.c_str());
1479 }
1480 }
1481 Finley_Mesh_saveDX(filename.c_str(),m_finleyMesh.get(),num_data,names,ptr_data);
1482 checkFinleyError();
1483
1484 /* win32 refactor */
1485 TMPMEMFREE(data);
1486 TMPMEMFREE(ptr_data);
1487 for(int i=0;i<num_data;i++)
1488 {
1489 TMPMEMFREE(names[i]);
1490 }
1491 TMPMEMFREE(names);
1492
1493 return;
1494 }
1495
1496 // saves a data array in openVTK format:
1497 void MeshAdapter::saveVTK(const std::string& filename,const boost::python::dict& arg) const
1498 {
1499 unsigned int MAX_namelength=IS_THERE_A_REASON_FOR_THIS_MAGIC_NAME_LENGTH;
1500 const int num_data=boost::python::extract<int>(arg.attr("__len__")());
1501 /* win32 refactor */
1502 char* *names = (num_data>0) ? TMPMEMALLOC(num_data,char*) : (char**)NULL;
1503 for(int i=0;i<num_data;i++)
1504 {
1505 names[i] = (MAX_namelength>0) ? TMPMEMALLOC(MAX_namelength,char) : (char*)NULL;
1506 }
1507
1508 escriptDataC *data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC) : (escriptDataC*)NULL;
1509 escriptDataC* *ptr_data = (num_data>0) ? TMPMEMALLOC(num_data,escriptDataC*) : (escriptDataC**)NULL;
1510
1511 boost::python::list keys=arg.keys();
1512 for (int i=0;i<num_data;++i) {
1513 std::string n=boost::python::extract<std::string>(keys[i]);
1514 escript::Data& d=boost::python::extract<escript::Data&>(arg[keys[i]]);
1515 if (dynamic_cast<const MeshAdapter&>(d.getFunctionSpace().getDomain()) !=*this)
1516 throw FinleyAdapterException("Error in saveVTK: Data must be defined on same Domain");
1517 data[i]=d.getDataC();
1518 ptr_data[i]=&(data[i]);
1519 if (n.length()>MAX_namelength-1) {
1520 strncpy(names[i],n.c_str(),MAX_namelength-1);
1521 names[i][MAX_namelength-1]='\0';
1522 } else {
1523 strcpy(names[i],n.c_str());
1524 }
1525 }
1526 Finley_Mesh_saveVTK(filename.c_str(),m_finleyMesh.get(),num_data,names,ptr_data);
1527
1528 checkFinleyError();
1529 /* win32 refactor */
1530 TMPMEMFREE(data);
1531 TMPMEMFREE(ptr_data);
1532 for(int i=0;i<num_data;i++)
1533 {
1534 TMPMEMFREE(names[i]);
1535 }
1536 TMPMEMFREE(names);
1537
1538 return;
1539 }
1540
1541
1542 // creates a SystemMatrixAdapter stiffness matrix an initializes it with zeros:
1543 SystemMatrixAdapter MeshAdapter::newSystemMatrix(
1544 const int row_blocksize,
1545 const escript::FunctionSpace& row_functionspace,
1546 const int column_blocksize,
1547 const escript::FunctionSpace& column_functionspace,
1548 const int type) const
1549 {
1550 int reduceRowOrder=0;
1551 int reduceColOrder=0;
1552 // is the domain right?
1553 const MeshAdapter& row_domain=dynamic_cast<const MeshAdapter&>(row_functionspace.getDomain());
1554 if (row_domain!=*this)
1555 throw FinleyAdapterException("Error - domain of row function space does not match the domain of matrix generator.");
1556 const MeshAdapter& col_domain=dynamic_cast<const MeshAdapter&>(column_functionspace.getDomain());
1557 if (col_domain!=*this)
1558 throw FinleyAdapterException("Error - domain of columnn function space does not match the domain of matrix generator.");
1559 // is the function space type right
1560 if (row_functionspace.getTypeCode()==DegreesOfFreedom) {
1561 reduceRowOrder=0;
1562 } else if (row_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1563 reduceRowOrder=1;
1564 } else {
1565 throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");
1566 }
1567 if (column_functionspace.getTypeCode()==DegreesOfFreedom) {
1568 reduceColOrder=0;
1569 } else if (column_functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1570 reduceColOrder=1;
1571 } else {
1572 throw FinleyAdapterException("Error - illegal function space type for system matrix columns.");
1573 }
1574 // generate matrix:
1575
1576 Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceRowOrder,reduceColOrder);
1577 checkFinleyError();
1578 Paso_SystemMatrix* fsystemMatrix;
1579 int trilinos = 0;
1580 if (trilinos) {
1581 #ifdef TRILINOS
1582 /* Allocation Epetra_VrbMatrix here */
1583 #endif
1584 }
1585 else {
1586 fsystemMatrix=Paso_SystemMatrix_alloc(type,fsystemMatrixPattern,row_blocksize,column_blocksize);
1587 }
1588 checkPasoError();
1589 Paso_SystemMatrixPattern_free(fsystemMatrixPattern);
1590 return SystemMatrixAdapter(fsystemMatrix,row_blocksize,row_functionspace,column_blocksize,column_functionspace);
1591 }
1592 // creates a TransportProblemAdapter
1593 TransportProblemAdapter MeshAdapter::newTransportProblem(
1594 const double theta,
1595 const int blocksize,
1596 const escript::FunctionSpace& functionspace,
1597 const int type) const
1598 {
1599 int reduceOrder=0;
1600 // is the domain right?
1601 const MeshAdapter& domain=dynamic_cast<const MeshAdapter&>(functionspace.getDomain());
1602 if (domain!=*this)
1603 throw FinleyAdapterException("Error - domain of function space does not match the domain of transport problem generator.");
1604 // is the function space type right
1605 if (functionspace.getTypeCode()==DegreesOfFreedom) {
1606 reduceOrder=0;
1607 } else if (functionspace.getTypeCode()==ReducedDegreesOfFreedom) {
1608 reduceOrder=1;
1609 } else {
1610 throw FinleyAdapterException("Error - illegal function space type for system matrix rows.");
1611 }
1612 // generate matrix:
1613
1614 Paso_SystemMatrixPattern* fsystemMatrixPattern=Finley_getPattern(getFinley_Mesh(),reduceOrder,reduceOrder);
1615 checkFinleyError();
1616 Paso_FCTransportProblem* transportProblem;
1617 transportProblem=Paso_FCTransportProblem_alloc(theta,fsystemMatrixPattern,blocksize);
1618 checkPasoError();
1619 Paso_SystemMatrixPattern_free(fsystemMatrixPattern);
1620 return TransportProblemAdapter(transportProblem,theta,blocksize,functionspace);
1621 }
1622
1623 //
1624 // vtkObject MeshAdapter::createVtkObject() const
1625 // TODO:
1626 //
1627
1628 //
1629 // returns true if data at the atom_type is considered as being cell centered:
1630 bool MeshAdapter::isCellOriented(int functionSpaceCode) const
1631 {
1632 switch(functionSpaceCode) {
1633 case(Nodes):
1634 case(DegreesOfFreedom):
1635 case(ReducedDegreesOfFreedom):
1636 return false;
1637 break;
1638 case(Elements):
1639 case(FaceElements):
1640 case(Points):
1641 case(ContactElementsZero):
1642 case(ContactElementsOne):
1643 case(ReducedElements):
1644 case(ReducedFaceElements):
1645 case(ReducedContactElementsZero):
1646 case(ReducedContactElementsOne):
1647 return true;
1648 break;
1649 default:
1650 stringstream temp;
1651 temp << "Error - Cell: Finley does not know anything about function space type " << functionSpaceCode;
1652 throw FinleyAdapterException(temp.str());
1653 break;
1654 }
1655 checkFinleyError();
1656 return false;
1657 }
1658
1659 bool MeshAdapter::probeInterpolationOnDomain(int functionSpaceType_source,int functionSpaceType_target) const
1660 {
1661 switch(functionSpaceType_source) {
1662 case(Nodes):
1663 switch(functionSpaceType_target) {
1664 case(Nodes):
1665 case(ReducedNodes):
1666 case(ReducedDegreesOfFreedom):
1667 case(DegreesOfFreedom):
1668 case(Elements):
1669 case(ReducedElements):
1670 case(FaceElements):
1671 case(ReducedFaceElements):
1672 case(Points):
1673 case(ContactElementsZero):
1674 case(ReducedContactElementsZero):
1675 case(ContactElementsOne):
1676 case(ReducedContactElementsOne):
1677 return true;
1678 default:
1679 stringstream temp;
1680 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1681 throw FinleyAdapterException(temp.str());
1682 }
1683 break;
1684 case(ReducedNodes):
1685 switch(functionSpaceType_target) {
1686 case(ReducedNodes):
1687 case(ReducedDegreesOfFreedom):
1688 case(Elements):
1689 case(ReducedElements):
1690 case(FaceElements):
1691 case(ReducedFaceElements):
1692 case(Points):
1693 case(ContactElementsZero):
1694 case(ReducedContactElementsZero):
1695 case(ContactElementsOne):
1696 case(ReducedContactElementsOne):
1697 return true;
1698 case(Nodes):
1699 case(DegreesOfFreedom):
1700 return false;
1701 default:
1702 stringstream temp;
1703 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1704 throw FinleyAdapterException(temp.str());
1705 }
1706 break;
1707 case(Elements):
1708 if (functionSpaceType_target==Elements) {
1709 return true;
1710 } else if (functionSpaceType_target==ReducedElements) {
1711 return true;
1712 } else {
1713 return false;
1714 }
1715 case(ReducedElements):
1716 if (functionSpaceType_target==ReducedElements) {
1717 return true;
1718 } else {
1719 return false;
1720 }
1721 case(FaceElements):
1722 if (functionSpaceType_target==FaceElements) {
1723 return true;
1724 } else if (functionSpaceType_target==ReducedFaceElements) {
1725 return true;
1726 } else {
1727 return false;
1728 }
1729 case(ReducedFaceElements):
1730 if (functionSpaceType_target==ReducedFaceElements) {
1731 return true;
1732 } else {
1733 return false;
1734 }
1735 case(Points):
1736 if (functionSpaceType_target==Points) {
1737 return true;
1738 } else {
1739 return false;
1740 }
1741 case(ContactElementsZero):
1742 case(ContactElementsOne):
1743 if (functionSpaceType_target==ContactElementsZero || functionSpaceType_target==ContactElementsOne) {
1744 return true;
1745 } else if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1746 return true;
1747 } else {
1748 return false;
1749 }
1750 case(ReducedContactElementsZero):
1751 case(ReducedContactElementsOne):
1752 if (functionSpaceType_target==ReducedContactElementsZero || functionSpaceType_target==ReducedContactElementsOne) {
1753 return true;
1754 } else {
1755 return false;
1756 }
1757 case(DegreesOfFreedom):
1758 switch(functionSpaceType_target) {
1759 case(ReducedDegreesOfFreedom):
1760 case(DegreesOfFreedom):
1761 case(Nodes):
1762 case(ReducedNodes):
1763 case(Elements):
1764 case(ReducedElements):
1765 case(Points):
1766 case(FaceElements):
1767 case(ReducedFaceElements):
1768 case(ContactElementsZero):
1769 case(ReducedContactElementsZero):
1770 case(ContactElementsOne):
1771 case(ReducedContactElementsOne):
1772 return true;
1773 default:
1774 stringstream temp;
1775 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1776 throw FinleyAdapterException(temp.str());
1777 }
1778 break;
1779 case(ReducedDegreesOfFreedom):
1780 switch(functionSpaceType_target) {
1781 case(ReducedDegreesOfFreedom):
1782 case(ReducedNodes):
1783 case(Elements):
1784 case(ReducedElements):
1785 case(FaceElements):
1786 case(ReducedFaceElements):
1787 case(Points):
1788 case(ContactElementsZero):
1789 case(ReducedContactElementsZero):
1790 case(ContactElementsOne):
1791 case(ReducedContactElementsOne):
1792 return true;
1793 case(Nodes):
1794 case(DegreesOfFreedom):
1795 return false;
1796 default:
1797 stringstream temp;
1798 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_target;
1799 throw FinleyAdapterException(temp.str());
1800 }
1801 break;
1802 default:
1803 stringstream temp;
1804 temp << "Error - Interpolation On Domain: Finley does not know anything about function space type " << functionSpaceType_source;
1805 throw FinleyAdapterException(temp.str());
1806 break;
1807 }
1808 checkFinleyError();
1809 return false;
1810 }
1811
1812 bool MeshAdapter::probeInterpolationACross(int functionSpaceType_source,const AbstractDomain& targetDomain, int functionSpaceType_target) const
1813 {
1814 return false;
1815 }
1816
1817 bool MeshAdapter::operator==(const AbstractDomain& other) const
1818 {
1819 const MeshAdapter* temp=dynamic_cast<const MeshAdapter*>(&other);
1820 if (temp!=0) {
1821 return (m_finleyMesh==temp->m_finleyMesh);
1822 } else {
1823 return false;
1824 }
1825 }
1826
1827 bool MeshAdapter::operator!=(const AbstractDomain& other) const
1828 {
1829 return !(operator==(other));
1830 }
1831
1832 int MeshAdapter::getSystemMatrixTypeId(const int solver, const int package, const bool symmetry) const
1833 {
1834 int out=Paso_SystemMatrix_getSystemMatrixTypeId(SystemMatrixAdapter::mapOptionToPaso(solver),SystemMatrixAdapter::mapOptionToPaso(package),symmetry?1:0);
1835 checkPasoError();
1836 return out;
1837 }
1838
1839 escript::Data MeshAdapter::getX() const
1840 {
1841 return continuousFunction(asAbstractContinuousDomain()).getX();
1842 }
1843
1844 escript::Data MeshAdapter::getNormal() const
1845 {
1846 return functionOnBoundary(asAbstractContinuousDomain()).getNormal();
1847 }
1848
1849 escript::Data MeshAdapter::getSize() const
1850 {
1851 return function(asAbstractContinuousDomain()).getSize();
1852 }
1853
1854 int* MeshAdapter::borrowSampleReferenceIDs(int functionSpaceType) const
1855 {
1856 int *out = NULL;
1857 Finley_Mesh* mesh=m_finleyMesh.get();
1858 switch (functionSpaceType) {
1859 case(Nodes):
1860 out=mesh->Nodes->Id;
1861 break;
1862 case(ReducedNodes):
1863 out=mesh->Nodes->reducedNodesId;
1864 break;
1865 case(Elements):
1866 out=mesh->Elements->Id;
1867 break;
1868 case(ReducedElements):
1869 out=mesh->Elements->Id;
1870 break;
1871 case(FaceElements):
1872 out=mesh->FaceElements->Id;
1873 break;
1874 case(ReducedFaceElements):
1875 out=mesh->FaceElements->Id;
1876 break;
1877 case(Points):
1878 out=mesh->Points->Id;
1879 break;
1880 case(ContactElementsZero):
1881 out=mesh->ContactElements->Id;
1882 break;
1883 case(ReducedContactElementsZero):
1884 out=mesh->ContactElements->Id;
1885 break;
1886 case(ContactElementsOne):
1887 out=mesh->ContactElements->Id;
1888 break;
1889 case(ReducedContactElementsOne):
1890 out=mesh->ContactElements->Id;
1891 break;
1892 case(DegreesOfFreedom):
1893 out=mesh->Nodes->degreesOfFreedomId;
1894 break;
1895 case(ReducedDegreesOfFreedom):
1896 out=mesh->Nodes->reducedDegreesOfFreedomId;
1897 break;
1898 default:
1899 stringstream temp;
1900 temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();
1901 throw FinleyAdapterException(temp.str());
1902 break;
1903 }
1904 return out;
1905 }
1906 int MeshAdapter::getTagFromSampleNo(int functionSpaceType, int sampleNo) const
1907 {
1908 int out=0;
1909 Finley_Mesh* mesh=m_finleyMesh.get();
1910 switch (functionSpaceType) {
1911 case(Nodes):
1912 out=mesh->Nodes->Tag[sampleNo];
1913 break;
1914 case(ReducedNodes):
1915 throw FinleyAdapterException(" Error - ReducedNodes does not support tags.");
1916 break;
1917 case(Elements):
1918 out=mesh->Elements->Tag[sampleNo];
1919 break;
1920 case(ReducedElements):
1921 out=mesh->Elements->Tag[sampleNo];
1922 break;
1923 case(FaceElements):
1924 out=mesh->FaceElements->Tag[sampleNo];
1925 break;
1926 case(ReducedFaceElements):
1927 out=mesh->FaceElements->Tag[sampleNo];
1928 break;
1929 case(Points):
1930 out=mesh->Points->Tag[sampleNo];
1931 break;
1932 case(ContactElementsZero):
1933 out=mesh->ContactElements->Tag[sampleNo];
1934 break;
1935 case(ReducedContactElementsZero):
1936 out=mesh->ContactElements->Tag[sampleNo];
1937 break;
1938 case(ContactElementsOne):
1939 out=mesh->ContactElements->Tag[sampleNo];
1940 break;
1941 case(ReducedContactElementsOne):
1942 out=mesh->ContactElements->Tag[sampleNo];
1943 break;
1944 case(DegreesOfFreedom):
1945 throw FinleyAdapterException(" Error - DegreesOfFreedom does not support tags.");
1946 break;
1947 case(ReducedDegreesOfFreedom):
1948 throw FinleyAdapterException(" Error - ReducedDegreesOfFreedom does not support tags.");
1949 break;
1950 default:
1951 stringstream temp;
1952 temp << "Error - Invalid function space type: " << functionSpaceType << " for domain: " << getDescription();
1953 throw FinleyAdapterException(temp.str());
1954 break;
1955 }
1956 return out;
1957 }
1958
1959
1960 void MeshAdapter::setTags(const int functionSpaceType, const int newTag, const escript::Data& mask) const
1961 {
1962 Finley_Mesh* mesh=m_finleyMesh.get();
1963 escriptDataC tmp=mask.getDataC();
1964 switch(functionSpaceType) {
1965 case(Nodes):
1966 Finley_NodeFile_setTags(mesh->Nodes,newTag,&tmp);
1967 break;
1968 case(ReducedNodes):
1969 throw FinleyAdapterException("Error - ReducedNodes does not support tags");
1970 break;
1971 case(DegreesOfFreedom):
1972 throw FinleyAdapterException("Error - DegreesOfFreedom does not support tags");
1973 break;
1974 case(ReducedDegreesOfFreedom):
1975 throw FinleyAdapterException("Error - ReducedDegreesOfFreedom does not support tags");
1976 break;
1977 case(Elements):
1978 Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);
1979 break;
1980 case(ReducedElements):
1981 Finley_ElementFile_setTags(mesh->Elements,newTag,&tmp);
1982 break;
1983 case(FaceElements):
1984 Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);
1985 break;
1986 case(ReducedFaceElements):
1987 Finley_ElementFile_setTags(mesh->FaceElements,newTag,&tmp);
1988 break;
1989 case(Points):
1990 Finley_ElementFile_setTags(mesh->Points,newTag,&tmp);
1991 break;
1992 case(ContactElementsZero):
1993 Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
1994 break;
1995 case(ReducedContactElementsZero):
1996 Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
1997 break;
1998 case(ContactElementsOne):
1999 Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2000 break;
2001 case(ReducedContactElementsOne):
2002 Finley_ElementFile_setTags(mesh->ContactElements,newTag,&tmp);
2003 break;
2004 default:
2005 stringstream temp;
2006 temp << "Error - Finley does not know anything about function space type " << functionSpaceType;
2007 throw FinleyAdapterException(temp.str());
2008 }
2009 checkFinleyError();
2010 return;
2011 }
2012
2013 void MeshAdapter::setTagMap(const std::string& name, int tag)
2014 {
2015 Finley_Mesh* mesh=m_finleyMesh.get();
2016 Finley_Mesh_addTagMap(mesh, name.c_str(),tag);
2017 checkPasoError();
2018 // throwStandardException("MeshAdapter::set TagMap is not implemented.");
2019 }
2020
2021 int MeshAdapter::getTag(const std::string& name) const
2022 {
2023 Finley_Mesh* mesh=m_finleyMesh.get();
2024 int tag=0;
2025 tag=Finley_Mesh_getTag(mesh, name.c_str());
2026 checkPasoError();
2027 // throwStandardException("MeshAdapter::getTag is not implemented.");
2028 return tag;
2029 }
2030
2031 bool MeshAdapter::isValidTagName(const std::string& name) const
2032 {
2033 Finley_Mesh* mesh=m_finleyMesh.get();
2034 return Finley_Mesh_isValidTagName(mesh,name.c_str());
2035 }
2036
2037 std::string MeshAdapter::showTagNames() const
2038 {
2039 stringstream temp;
2040 Finley_Mesh* mesh=m_finleyMesh.get();
2041 Finley_TagMap* tag_map=mesh->TagMap;
2042 while (tag_map) {
2043 temp << tag_map->name;
2044 tag_map=tag_map->next;
2045 if (tag_map) temp << ", ";
2046 }
2047 return temp.str();
2048 }
2049
2050 } // end of namespace

Properties

Name Value
svn:eol-style native
svn:keywords Author Date Id Revision

  ViewVC Help
Powered by ViewVC 1.1.26