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Revision 3227 - (view) (annotate) - [select for diffs]
Modified Thu Sep 30 06:07:08 2010 UTC (8 years, 5 months ago) by jfenwick
File length: 72277 byte(s)
Diff to previous 3220
Pass1 or moving MPI stuff out of paso


Revision 3220 - (view) (annotate) - [select for diffs]
Modified Wed Sep 29 00:33:16 2010 UTC (8 years, 5 months ago) by jfenwick
File length: 72602 byte(s)
Diff to previous 3216
Removing references to Quadrature.? and ShapeFns


Revision 3216 - (view) (annotate) - [select for diffs]
Modified Tue Sep 28 05:13:17 2010 UTC (8 years, 5 months ago) by jfenwick
File length: 72575 byte(s)
Diff to previous 3152
ElementFile does not use ReferenceElements anymore


Revision 3152 - (view) (annotate) - [select for diffs]
Modified Fri Sep 3 05:48:31 2010 UTC (8 years, 6 months ago) by jfenwick
File length: 72581 byte(s)
Diff to previous 3115
Collapsed duplicate fields

Revision 3115 - (view) (annotate) - [select for diffs]
Modified Sun Aug 29 23:14:35 2010 UTC (8 years, 6 months ago) by jfenwick
File length: 72585 byte(s)
Diff to previous 3114
Now have cubes facing the correct direction


Revision 3114 - (view) (annotate) - [select for diffs]
Modified Fri Aug 27 05:26:25 2010 UTC (8 years, 6 months ago) by jfenwick
File length: 72668 byte(s)
Diff to previous 3090
It doesn't pass all tests but this is major progress


Revision 3090 - (view) (annotate) - [select for diffs]
Modified Wed Aug 11 00:51:28 2010 UTC (8 years, 7 months ago) by jfenwick
File length: 72859 byte(s)
Diff to previous 3086
Removed:
DUDLEY_CONTACT_ELEMENTS_1
DUDLEY_CONTACT_ELEMENTS_2
DUDLEY_REDUCED_CONTACT_ELEMENTS_1
DUDLEY_REDUCED_CONTACT_ELEMENTS_2

escript tests now query if the domain supports contact elements
before trying to use them.



Revision 3086 - (view) (annotate) - [select for diffs]
Modified Thu Aug 5 05:07:58 2010 UTC (8 years, 7 months ago) by jfenwick
File length: 85811 byte(s)
Diff to previous 3082
Another pass at removing finley


Revision 3082 - (view) (annotate) - [select for diffs]
Modified Tue Aug 3 06:04:05 2010 UTC (8 years, 7 months ago) by jfenwick
File length: 85811 byte(s)
Diff to previous 3080
Builds but does not import properly

Revision 3080 - (view) (annotate) - [select for diffs]
Modified Tue Aug 3 04:28:03 2010 UTC (8 years, 7 months ago) by jfenwick
File length: 85811 byte(s)
Diff to previous 3079
inital rename

Revision 3079 - (view) (annotate) - [select for diffs]
Modified Tue Aug 3 04:04:51 2010 UTC (8 years, 7 months ago) by jfenwick
Original Path: branches/domexper/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85811 byte(s)
Diff to previous 2989
Some experiments on finley


Revision 2989 - (view) (annotate) - [select for diffs]
Modified Thu Mar 18 01:45:55 2010 UTC (9 years ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85811 byte(s)
Diff to previous 2987
- bug in error handling in the case of lumped mass matrix fixed.
- switched back to rowsum lumping as there are problems with HRZ lumping for order 2 



Revision 2987 - (view) (annotate) - [select for diffs]
Modified Tue Mar 16 01:32:43 2010 UTC (9 years ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85784 byte(s)
Diff to previous 2940
FCT solver rewritten

Revision 2940 - (view) (annotate) - [select for diffs]
Modified Fri Feb 19 00:38:45 2010 UTC (9 years, 1 month ago) by caltinay
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85763 byte(s)
Diff to previous 2898
Minor potential optimization: prefer empty() over size()==0.


Revision 2898 - (view) (annotate) - [select for diffs]
Modified Mon Feb 1 01:23:46 2010 UTC (9 years, 1 month ago) by caltinay
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85765 byte(s)
Diff to previous 2881
Reverted the move of system_dep.h since it didn't solve the problem nicely.
Created a wrapper class for the needed functionality instead.


Revision 2881 - (view) (annotate) - [select for diffs]
Modified Thu Jan 28 02:03:15 2010 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85467 byte(s)
Diff to previous 2856
Don't panic.
Updating copyright stamps


Revision 2856 - (view) (annotate) - [select for diffs]
Modified Mon Jan 18 04:14:37 2010 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85467 byte(s)
Diff to previous 2842
FunctionSpaces provide now some information about their approximation order.

Revision 2842 - (view) (annotate) - [select for diffs]
Modified Thu Jan 14 05:42:02 2010 UTC (9 years, 2 months ago) by caltinay
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84477 byte(s)
Diff to previous 2778
Changed domain::dump() to write out NodeDistribution & DofDistribution even if
the current process has 0 nodes.


Revision 2778 - (view) (annotate) - [select for diffs]
Modified Thu Nov 26 01:50:30 2009 UTC (9 years, 3 months ago) by caltinay
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84513 byte(s)
Diff to previous 2748
Fixed unintended pointer arithmetic with c-strings in MeshAdapter::dump() and
shortened error messages while being at it.


Revision 2748 - (view) (annotate) - [select for diffs]
Modified Tue Nov 17 07:32:59 2009 UTC (9 years, 4 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 89901 byte(s)
Diff to previous 2644
Macro elements are implemented now. VTK writer for macro elements still needs testing.

Revision 2644 - (view) (annotate) - [select for diffs]
Modified Wed Sep 2 04:14:03 2009 UTC (9 years, 6 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 89493 byte(s)
Diff to previous 2642
Add unit tests for saveDataCSV which should be ready for use now.
Keyword args are now output in sorted order.

Removed some unneeded functions.

Revision 2642 - (view) (annotate) - [select for diffs]
Modified Tue Sep 1 04:15:50 2009 UTC (9 years, 6 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 89471 byte(s)
Diff to previous 2641
pre cleanup

Revision 2641 - (view) (annotate) - [select for diffs]
Modified Mon Aug 31 07:41:49 2009 UTC (9 years, 6 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 88704 byte(s)
Diff to previous 2640
Fixed some of my stupids related to MPI compile errors.


Revision 2640 - (view) (annotate) - [select for diffs]
Modified Mon Aug 31 06:22:10 2009 UTC (9 years, 6 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 88696 byte(s)
Diff to previous 2635
Adding getMPIComm


Revision 2635 - (view) (annotate) - [select for diffs]
Modified Thu Aug 27 04:54:41 2009 UTC (9 years, 6 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 88534 byte(s)
Diff to previous 2551
A bunch of changes related to saveDataCSV.
[Not completed or unit tested yet]

Added saveDataCSV to util.py
AbstractDomain (and MeshAdapter) have a commonFunctionSpace method to 
take a group of FunctionSpaces and return something they can all be interpolated to.

Added pointToStream() in DataTypes to help print points.

added actsConstant() to data - required because DataConstant doesn't store samples the same way other Data do.

Revision 2551 - (view) (annotate) - [select for diffs]
Modified Thu Jul 23 09:19:15 2009 UTC (9 years, 7 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85464 byte(s)
Diff to previous 2548
a problem with the sparse matrix unrolling fixed.

Revision 2548 - (view) (annotate) - [select for diffs]
Modified Mon Jul 20 06:20:06 2009 UTC (9 years, 8 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85458 byte(s)
Diff to previous 2533
Updating copyright notices

Revision 2533 - (view) (annotate) - [select for diffs]
Modified Wed Jul 15 05:57:01 2009 UTC (9 years, 8 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85458 byte(s)
Diff to previous 2519
finley delivers now a status identifier of the mesh.

Revision 2519 - (view) (annotate) - [select for diffs]
Modified Mon Jul 6 00:43:08 2009 UTC (9 years, 8 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85316 byte(s)
Diff to previous 2518
Correcting some doxygen errors

Revision 2518 - (view) (annotate) - [select for diffs]
Modified Fri Jul 3 07:43:11 2009 UTC (9 years, 8 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85322 byte(s)
Diff to previous 2487
bug in setNewX fixed: now it is made sure that the FunctionSpace of the new coordinates is correct.

Revision 2487 - (view) (annotate) - [select for diffs]
Modified Tue Jun 23 04:26:07 2009 UTC (9 years, 8 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85017 byte(s)
Diff to previous 2421
Fixed const-ness on some return values.
Null-Domain now reports tag one as being in use.

Revision 2421 - (view) (annotate) - [select for diffs]
Modified Thu May 14 02:29:06 2009 UTC (9 years, 10 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85004 byte(s)
Diff to previous 2385
vtk writer supports now meta data and meta data schema

Revision 2385 - (view) (annotate) - [select for diffs]
Modified Wed Apr 15 03:52:38 2009 UTC (9 years, 11 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84895 byte(s)
Diff to previous 2315
two fixes dealing with zero samples under MPI

Revision 2315 - (view) (annotate) - [select for diffs]
Modified Wed Mar 18 00:38:48 2009 UTC (10 years ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84154 byte(s)
Diff to previous 2151
fixes for MPI

Revision 2151 - (view) (annotate) - [select for diffs]
Modified Wed Dec 10 06:34:25 2008 UTC (10 years, 3 months ago) by caltinay
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84042 byte(s)
Diff to previous 2150
Moved common functionality from saveDX/VTK into private method. May be used
for future save* methods.


Revision 2150 - (view) (annotate) - [select for diffs]
Modified Wed Dec 10 05:57:12 2008 UTC (10 years, 3 months ago) by caltinay
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84711 byte(s)
Diff to previous 2149
Removed unnecessary "magic name length".


Revision 2149 - (view) (annotate) - [select for diffs]
Modified Wed Dec 10 05:08:17 2008 UTC (10 years, 3 months ago) by caltinay
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85399 byte(s)
Diff to previous 2100
Fixed a typo in error message.


Revision 2100 - (view) (annotate) - [select for diffs]
Modified Wed Nov 26 08:13:00 2008 UTC (10 years, 3 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85402 byte(s)
Diff to previous 2087
This commit cleans up the incompressible solver and adds a DarcyFlux solver in model module. 
Some documentation for both classes has been added.
The convection code is only linear at the moment.




Revision 2087 - (view) (annotate) - [select for diffs]
Modified Mon Nov 24 04:51:30 2008 UTC (10 years, 3 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85375 byte(s)
Diff to previous 2078
Addressing mantis issue #221.
Interpolation.. and probeInterpolation.. now "work" for the NullDomain.
Work means throw a descriptive exception if you try to move into or out 
of the NullDomain.
The bad_cast exception related to this has been fixed.



Revision 2078 - (view) (annotate) - [select for diffs]
Modified Thu Nov 20 16:10:10 2008 UTC (10 years, 3 months ago) by phornby
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85322 byte(s)
Diff to previous 1990
Two changes.

1. Move blocktimer from escript to esysUtils.
2. Make it possible to link to paso as a DLL or .so.

Should have no effect on 'nix's

In respect of 1., blocktimer had begun to spring up everywhere, so
for the moment I thought it best to move it to the only other library that
pops up all over the place.

In respect of 2., paso needed to be a DLL in order to use the windows intelc /fast
option, which does aggressive multi-file optimisations. Even in its current form, it either
vectorises or parallelises  hundreds more loops in the esys system than appear in the pragmas.

In achieving 2. I have not been too delicate in adding

PASO_DLL_API

declarations to the .h files in paso/src. Only toward the end of the process of
the conversion, when the number of linker errors dropped below 20, say, did I choosy about what
functions in a header I declared PASO_DLL_API. As a result, there are likely to be many routines
declared as external functions symbols that are in fact internal to the paso DLL. 
Why is this an issue?  It prevents the intelc compiler from getting aggressive on the paso module.
With pain there is sometimes gain. At least all the DLL rules in windows give good
(non-microsoft) compiler writers a chance to really shine.

So, if you should see a PASO_DLL_API on a function in a paso header file,
and think to yourself, "that function is only called in paso, why export it?", then feel free to
delete the PASO_DLL_API export declaration.

Here's hoping for no breakage.....

Revision 1990 - (view) (annotate) - [select for diffs]
Modified Fri Nov 7 04:19:07 2008 UTC (10 years, 4 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85320 byte(s)
Diff to previous 1877
Changes to avoid compiler warnings
Finley files now pass -Wall on gcc 4.3.2
	saveVTK.c: replaced printf(string) with printf("%s", string)
	MeshAdapterFactory.cpp: moved a few lines to avoid possible use of uninitialized vars
	MeshAdapter.cpp: initialized ncdims in mesh dump
There is still a warning from a boost include file


Revision 1877 - (view) (annotate) - [select for diffs]
Modified Tue Oct 14 02:58:39 2008 UTC (10 years, 5 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85256 byte(s)
Diff to previous 1872
convection.py checkpointing uses mkdir/rmdir, and under MPI there
was a race condition.

mkdir needs to be run on only one CPU and then a barrier to prevent
working processors from using the directory before it exists.

Added methods domain.MPIBarrier and domain.onMasterProcessor() to
implement this technique.

A more general solution might be possible in the future.


Revision 1872 - (view) (annotate) - [select for diffs]
Modified Mon Oct 13 00:18:55 2008 UTC (10 years, 5 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85032 byte(s)
Diff to previous 1859
Closing the moreshared branch


Revision 1859 - (view) (annotate) - [select for diffs]
Modified Wed Oct 8 03:03:37 2008 UTC (10 years, 5 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84833 byte(s)
Diff to previous 1811
first version of testing for transport solver.

Revision 1811 - (view) (annotate) - [select for diffs]
Modified Thu Sep 25 23:11:13 2008 UTC (10 years, 5 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84382 byte(s)
Diff to previous 1802
Copyright updated in all files


Revision 1802 - (view) (annotate) - [select for diffs]
Modified Tue Sep 23 01:03:29 2008 UTC (10 years, 5 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84417 byte(s)
Diff to previous 1801
Added canTag methods to FunctionSpace and AbstractDomain (and its 
offspring).
This checks to see if the domain supports tags for the given type of 
function space.

Constructors for DataTagged now throw exceptions if you attempt to make 
a DataTagged with a FunctionSpace which does not support tags.
To allow the default constructor to work, NullDomain has a single 
functioncode which "supports" tagging.

Fixed a bug in DataTagged::toString and DataTypes::pointToString.

Added FunctionSpace::getListOfTagsSTL.

algorithm(DataTagged, BinaryFunction) in DataAlgorithm now only 
processes tags known to be in use.
This fixes mantis issue #0000186.

Added comment to Data.h intro warning about holding references if the 
underlying DataAbstract changes.

_python_ unit tests have been updated to test TaggedData with invalid 
FunctionSpaces and to give the correct answers to Lsup etc.



Revision 1801 - (view) (annotate) - [select for diffs]
Modified Fri Sep 19 01:37:09 2008 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 83909 byte(s)
Diff to previous 1800
Fixed serialization of I/O for MPI...code didn't compile without MPI


Revision 1800 - (view) (annotate) - [select for diffs]
Modified Thu Sep 18 05:28:20 2008 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 83999 byte(s)
Diff to previous 1796
Serialized parallel I/O when writing mesh or data to NetCDF file on multiple MPI processors.
Added domain method getMPIComm() to complement getMPISize() and getMPIRank().


Revision 1796 - (view) (annotate) - [select for diffs]
Modified Wed Sep 17 01:45:46 2008 UTC (10 years, 6 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 83416 byte(s)
Diff to previous 1777
Merged noarrayview branch onto trunk.



Revision 1777 - (view) (annotate) - [select for diffs]
Modified Tue Sep 9 06:39:37 2008 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 83420 byte(s)
Diff to previous 1776
Implemented Lutz fix for MPI mesh dump/load using NetCDF


Revision 1776 - (view) (annotate) - [select for diffs]
Modified Tue Sep 9 06:03:53 2008 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84924 byte(s)
Diff to previous 1755
Cleared away some debugging prints


Revision 1755 - (view) (annotate) - [select for diffs]
Modified Mon Sep 8 01:34:40 2008 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85272 byte(s)
Diff to previous 1754
Added new field to NetCDF dump of mesh


Revision 1754 - (view) (annotate) - [select for diffs]
Modified Sun Sep 7 22:07:26 2008 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84431 byte(s)
Diff to previous 1748
Added new test suite run_inputOutput.py to systematically test I/O.
Can determine if two domains are same with Fourier analysis.
Added new method getNumDataPointsGlobal to return number of DPs of a distributed mesh.
Reading of tags in ReadMeshMPI failed occasionally, should be more robust now.


Revision 1748 - (view) (annotate) - [select for diffs]
Modified Wed Sep 3 06:10:39 2008 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84232 byte(s)
Diff to previous 1716
MPI parallelism for Data().dump and load.  Use multiple NetCDF
files, one file per MPI process


Revision 1716 - (view) (annotate) - [select for diffs]
Modified Thu Aug 21 05:03:49 2008 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 84445 byte(s)
Diff to previous 1632
getListOfTags method added to FunctionSpace class

Revision 1632 - (view) (annotate) - [select for diffs]
Modified Sat Jul 12 07:17:50 2008 UTC (10 years, 8 months ago) by trankine
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 81727 byte(s)
Diff to previous 1628
compiling with netcdf on revealed an unused var.

Revision 1628 - (view) (annotate) - [select for diffs]
Modified Fri Jul 11 13:12:46 2008 UTC (10 years, 8 months ago) by phornby
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 81734 byte(s)
Diff to previous 1464

Merge in /branches/windows_from_1456_trunk_1620_merged_in branch.

You will find a preserved pre-merge trunk in tags under tags/trunk_at_1625.
That will be useful for diffing & checking on my stupidity.

Here is a list of the conflicts and their resolution at this
point in time.


=================================================================================
(LLWS == looks like white space).

finley/src/Assemble_addToSystemMatrix.c - resolve to branch - unused var. may be wrong.....
finley/src/CPPAdapter/SystemMatrixAdapter.cpp - resolve to branch - LLWS
finley/src/CPPAdapter/MeshAdapter.cpp - resolve to branch - LLWS
paso/src/PCG.c - resolve to branch - unused var fixes.
paso/src/SolverFCT.c - resolve to branch - LLWS
paso/src/FGMRES.c - resolve to branch - LLWS
paso/src/Common.h - resolve to trunk version. It's omp.h's include... not sure it's needed,
but for the sake of saftey.....
paso/src/Functions.c - resolve to branch version, indentation/tab removal and return error
on bad unimplemented Paso_FunctionCall.
paso/src/SolverFCT_solve.c - resolve to branch version, unused vars
paso/src/SparseMatrix_MatrixVector.c - resolve to branch version, unused vars.
escript/src/Utils.cpp - resloved to branch, needs WinSock2.h
escript/src/DataExpanded.cpp - resolved to branch version - LLWS
escript/src/DataFactory.cpp - resolve to branch version
=================================================================================

This currently passes tests on linux (debian), but is not checked on windows or Altix yet.

This checkin is to make a trunk I can check out for windows to do tests on it.

Known outstanding problem is in the operator=() method of exceptions
causing warning messages on the intel compilers.

May the God of doughnuts have mercy on my soul.



Revision 1464 - (view) (annotate) - [select for diffs]
Modified Tue Apr 1 23:27:09 2008 UTC (10 years, 11 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85698 byte(s)
Diff to previous 1455
bug for interpoltion from reduced solution to elements in MPI fixed.

Revision 1455 - (view) (annotate) - [select for diffs]
Modified Thu Feb 28 17:19:44 2008 UTC (11 years ago) by phornby
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85670 byte(s)
Diff to previous 1407
Merge of branches/windows_from_1431_trunk.

Revamp of the exception system.
Fix unused vars and signed/unsigned comparisons.
defined a macro THROW(ARG) in the system_dep.h's to
deal with the expectations of declarations on different architectures.

Details in the logs of branches/windows_from_1431_trunk.

pre-merge snapshot of the trunk in tags/trunk_at_1452



Revision 1407 - (view) (annotate) - [select for diffs]
Modified Mon Feb 4 06:45:48 2008 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 85508 byte(s)
Diff to previous 1388
new upwinding algorithm (still fails)

Revision 1388 - (view) (annotate) - [select for diffs]
Modified Fri Jan 11 07:45:58 2008 UTC (11 years, 2 months ago) by trankine
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 86045 byte(s)
Diff to previous 1387
And get the *(&(*&(* name right

Revision 1387 - (view) (annotate) - [select for diffs]
Modified Fri Jan 11 07:45:26 2008 UTC (11 years, 2 months ago) by trankine
Original Path: temp/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 86045 byte(s)
Diff to previous 1384
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

Revision 1384 - (view) (annotate) - [select for diffs]
Modified Fri Jan 11 02:29:38 2008 UTC (11 years, 2 months ago) by phornby
Original Path: temp_trunk_copy/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 86045 byte(s)
Diff to previous 1375
Make a temp copy of the trunk before checking in the windows changes



Revision 1375 - (view) (annotate) - [select for diffs]
Modified Wed Jan 9 00:15:05 2008 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 86045 byte(s)
Diff to previous 1370
bug in interpolation at reduced face elements fixed.

Revision 1370 - (view) (annotate) - [select for diffs]
Modified Wed Jan 2 09:21:43 2008 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 86141 byte(s)
Diff to previous 1367
explicit upwinding scheme added.

Revision 1367 - (view) (annotate) - [select for diffs]
Modified Wed Dec 19 02:45:07 2007 UTC (11 years, 3 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 86121 byte(s)
Diff to previous 1366
finley can now assemble a transport problem.

Revision 1366 - (view) (annotate) - [select for diffs]
Modified Tue Dec 18 05:49:17 2007 UTC (11 years, 3 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 83950 byte(s)
Diff to previous 1361
finley can create a TransportProblem now

Revision 1361 - (view) (annotate) - [select for diffs]
Modified Fri Dec 14 09:26:51 2007 UTC (11 years, 3 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 82498 byte(s)
Diff to previous 1347
first steps towards a flux controlled transport solver.

Revision 1347 - (view) (annotate) - [select for diffs]
Modified Fri Nov 16 05:37:07 2007 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 82429 byte(s)
Diff to previous 1346
Completed mesh.dump(file) and mesh=LoadMesh(file) by adding TagMap and
implementing MPI parallelism.
Now allocating ElementFile for ContactElements even if there are none.
Removed file Mesh_dump.c since dump/loadMesh are in CPPAdapter/MeshAdapter*.cpp.


Revision 1346 - (view) (annotate) - [select for diffs]
Modified Wed Nov 14 22:48:12 2007 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 80790 byte(s)
Diff to previous 1345
dump/LoadMesh methods work except for TagMap, Point elements probably OK but are untested.


Revision 1345 - (view) (annotate) - [select for diffs]
Modified Wed Nov 14 07:53:34 2007 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 80145 byte(s)
Diff to previous 1344
Created LoadMesh to read a mesh from a distributed NetCDF file.
Can read nodes but not elements yet.


Revision 1344 - (view) (annotate) - [select for diffs]
Modified Wed Nov 14 04:28:25 2007 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 79785 byte(s)
Diff to previous 1343
Now using TMPMEMFREE but still thrashes memory for very large mesh.
Future solution will be to use NetCDF subsetting and less temp memory.


Revision 1343 - (view) (annotate) - [select for diffs]
Modified Wed Nov 14 02:48:02 2007 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 79640 byte(s)
Diff to previous 1339
First cut implementation of mesh.dump() using NetCDF.  TagMap not
saved yet.  The code for Points probably works but has not been tested.


Revision 1339 - (view) (annotate) - [select for diffs]
Modified Wed Nov 7 01:53:12 2007 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 58871 byte(s)
Diff to previous 1326
Modified scons target release_src to include lib/ and include/ since
their presence is required for a build.  Modified
mydomain.print_mesh_info(True) to include more useful info about a
distributed domain.  Added mypde.getOperator().print_matrix_info(True)
to tell about a distributed matrix.



Revision 1326 - (view) (annotate) - [select for diffs]
Modified Mon Oct 1 08:10:41 2007 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 58844 byte(s)
Diff to previous 1312
Implemented domain.print_mesh_info() so we can see the distribution of elements & nodes.
Implemented -DBOUNDS_CHECK to catch an error with periodicN=True.


Revision 1312 - (view) (annotate) - [select for diffs]
Modified Mon Sep 24 06:18:44 2007 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 58752 byte(s)
Diff to previous 1204
The MPI branch is hereby closed. All future work should be in trunk.

Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.


Revision 1204 - (view) (annotate) - [select for diffs]
Modified Sat Jun 23 11:43:12 2007 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 56656 byte(s)
Diff to previous 1137
a frame for an improved lumping procedure added.

Revision 1137 - (view) (annotate) - [select for diffs]
Modified Thu May 10 08:11:31 2007 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 56150 byte(s)
Diff to previous 1116
This version passes the tests on windows except for 

   * vtk
   * netCDF

The version needs to be tested on altix and linux

Revision 1116 - (view) (annotate) - [select for diffs]
Modified Mon Apr 23 03:36:34 2007 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 56126 byte(s)
Diff to previous 1080
Interporpolation from full to reduced integration order added.



Revision 1080 - (view) (annotate) - [select for diffs]
Modified Wed Apr 11 06:07:30 2007 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 55228 byte(s)
Diff to previous 1064
small typo fixed.

Revision 1064 - (view) (annotate) - [select for diffs]
Modified Tue Mar 27 06:21:02 2007 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 55232 byte(s)
Diff to previous 1062
test for reduced integration order for grad, interpolate and integrate added.
Bug shown by the tests have been fixed.



Revision 1062 - (view) (annotate) - [select for diffs]
Modified Mon Mar 26 06:17:53 2007 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 55217 byte(s)
Diff to previous 1059
reduced integration schemes are implemented now for grad, integrate, etc. Tests still to be added.

Revision 1059 - (view) (annotate) - [select for diffs]
Modified Fri Mar 23 11:01:53 2007 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 44072 byte(s)
Diff to previous 1044
first steps toward reduced element integration order. The escript bit is done but the finley part still needs work.

Revision 1044 - (view) (annotate) - [select for diffs]
Modified Mon Mar 19 07:29:31 2007 UTC (12 years ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 42856 byte(s)
Diff to previous 971
clear name tagging is supported now.

Revision 971 - (view) (annotate) - [select for diffs]
Modified Wed Feb 14 04:40:49 2007 UTC (12 years, 1 month ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 41890 byte(s)
Diff to previous 969
Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.



Revision 969 - (view) (annotate) - [select for diffs]
Modified Tue Feb 13 23:02:23 2007 UTC (12 years, 1 month ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 42220 byte(s)
Diff to previous 967
Parallelization using MPI for solution of implicit problems.

Parallelization for explicit problems has already been accomplished in
the main SVN branch.

This is incomplete and is not ready for use.



Revision 967 - (view) (annotate) - [select for diffs]
Modified Tue Feb 13 09:40:12 2007 UTC (12 years, 1 month ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 41890 byte(s)
Diff to previous 964
dump and load of expanded data via netCDF added. some test are still missing.

Revision 964 - (view) (annotate) - [select for diffs]
Modified Tue Feb 13 05:10:26 2007 UTC (12 years, 1 month ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 42261 byte(s)
Diff to previous 817
The set/getRefVal functions of Data objects have been removed (mainly to avoid later problems with MPI).
Moreover, a faster access to the reference id of samples has been introduced. I don't think that anybody will
profit form this at this stage but it will allow a faster dump of data objects.



Revision 817 - (view) (annotate) - [select for diffs]
Modified Sat Aug 26 03:08:52 2006 UTC (12 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 42220 byte(s)
Diff to previous 798
Can now compile and run with MPI on shake71



Revision 798 - (view) (annotate) - [select for diffs]
Modified Fri Aug 4 01:05:36 2006 UTC (12 years, 7 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 42180 byte(s)
Diff to previous 793
Reimplementation of the assemblage with persistent jacobeans.
There are also a few changes to the tests which has now
dramatically reduced the memory demand.



Revision 793 - (view) (annotate) - [select for diffs]
Modified Sat Jul 29 19:40:22 2006 UTC (12 years, 7 months ago) by dhawcroft
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 42672 byte(s)
Diff to previous 767
Preliminary MPI version of saveVTK. Needs testers. Works for point data and should work for cell centered data.

Revision 767 - (view) (annotate) - [select for diffs]
Modified Fri Jun 30 07:29:08 2006 UTC (12 years, 8 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 42549 byte(s)
Diff to previous 757
new FunctionSpace method setTags added

Revision 757 - (view) (annotate) - [select for diffs]
Modified Mon Jun 26 13:12:56 2006 UTC (12 years, 8 months ago) by woo409
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 41135 byte(s)
Diff to previous 751
+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)


Revision 751 - (view) (annotate) - [select for diffs]
Modified Mon Jun 26 01:46:34 2006 UTC (12 years, 8 months ago) by bcumming
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 39985 byte(s)
Diff to previous 682
Changes relating to the MPI version of escript
The standard OpenMP version of escript is unchanged

- updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes
  over multiple MPI processes.
- added CommBuffer code in Paso for communication of Data associated
  with distributed meshes
- updates in Finley and Escript to support distributed data and operations
  on distributed data (such as interpolation).
- construction of RHS in MPI, so that simple explicit schemes (such as
  /docs/examples/wave.py without IO and the Locator) can run in MPI.
- updated mesh generation for first order line, rectangle and brick
  meshes and second order line meshes in MPI.        
- small changes to trunk/SConstruct and trunk/scons/ess_options.py to
  build the MPI version, these changes are turned off by default.


Revision 682 - (view) (annotate) - [select for diffs]
Modified Mon Mar 27 02:43:09 2006 UTC (12 years, 11 months ago) by robwdcock
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 37983 byte(s)
Diff to previous 547
+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3



Revision 547 - (view) (annotate) - [select for diffs]
Modified Tue Feb 21 06:10:54 2006 UTC (13 years ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 37967 byte(s)
Diff to previous 532
solution and reduced solution can have reference numbers now!

Revision 532 - (view) (annotate) - [select for diffs]
Modified Wed Feb 15 09:45:53 2006 UTC (13 years, 1 month ago) by gross
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 40307 byte(s)
Diff to previous 480
first steps towards the reuse of the element jacobians

Revision 480 - (view) (annotate) - [select for diffs]
Modified Wed Feb 1 05:15:12 2006 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 40318 byte(s)
Diff to previous 472
rationalise #includes and forward declarations


Revision 472 - (view) (annotate) - [select for diffs]
Modified Fri Jan 27 01:50:59 2006 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 39959 byte(s)
Diff to previous 471
rationalise all #includes


Revision 471 - (view) (annotate) - [select for diffs]
Modified Fri Jan 27 01:33:02 2006 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 40445 byte(s)
Diff to previous 467
reorganise finley src tree to remove inc dir and src/finley directory


Revision 467 - (view) (annotate) - [select for diffs]
Modified Wed Jan 25 05:43:46 2006 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter/MeshAdapter.cpp
File length: 40445 byte(s)
Diff to previous 203
adjustments to includes to allow for new paso src tree structure

Revision 203 - (view) (annotate) - [select for diffs]
Modified Wed Nov 23 04:36:15 2005 UTC (13 years, 3 months ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter/MeshAdapter.cpp
File length: 40450 byte(s)
Diff to previous 201
adjust include file names to allow for new finley source tree structure


Revision 201 - (view) (annotate) - [select for diffs]
Modified Wed Nov 23 04:10:21 2005 UTC (13 years, 3 months ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter/MeshAdapter.cpp
File length: 40582 byte(s)
Diff to previous 155
copy finleyC and CPPAdapter to finley and finley/CPPAdapter to
facilitate scons builds


Revision 155 - (view) (annotate) - [select for diffs]
Modified Wed Nov 9 02:02:19 2005 UTC (13 years, 4 months ago) by jgs
Original Path: trunk/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 40582 byte(s)
Diff to previous 153
move all directories from trunk/esys2 into trunk and remove esys2


Revision 153 - (view) (annotate) - [select for diffs]
Modified Tue Oct 25 01:51:20 2005 UTC (13 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 40582 byte(s)
Diff to previous 150
Merge of development branch dev-02 back to main trunk on 2005-10-25


Revision 150 - (view) (annotate) - [select for diffs]
Modified Thu Sep 15 03:44:45 2005 UTC (13 years, 6 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 38207 byte(s)
Diff to previous 149
Merge of development branch dev-02 back to main trunk on 2005-09-15


Revision 149 - (view) (annotate) - [select for diffs]
Modified Thu Sep 1 03:31:39 2005 UTC (13 years, 6 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 38304 byte(s)
Diff to previous 148
Merge of development branch dev-02 back to main trunk on 2005-09-01


Revision 148 - (view) (annotate) - [select for diffs]
Modified Tue Aug 23 01:24:31 2005 UTC (13 years, 6 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 38264 byte(s)
Diff to previous 147
Merge of development branch dev-02 back to main trunk on 2005-08-23


Revision 147 - (view) (annotate) - [select for diffs]
Modified Fri Aug 12 01:45:47 2005 UTC (13 years, 7 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 38202 byte(s)
Diff to previous 123
erge of development branch dev-02 back to main trunk on 2005-08-12


Revision 123 - (view) (annotate) - [select for diffs]
Modified Fri Jul 8 04:08:13 2005 UTC (13 years, 8 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 37731 byte(s)
Diff to previous 121
Merge of development branch back to main trunk on 2005-07-08


Revision 121 - (view) (annotate) - [select for diffs]
Modified Fri May 6 04:26:16 2005 UTC (13 years, 10 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 37807 byte(s)
Diff to previous 110
Merge of development branch back to main trunk on 2005-05-06


Revision 110 - (view) (annotate) - [select for diffs]
Modified Mon Feb 14 04:14:42 2005 UTC (14 years, 1 month ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 37679 byte(s)
Diff to previous 104
*** empty log message ***


Revision 104 - (view) (annotate) - [select for diffs]
Modified Fri Dec 17 07:43:12 2004 UTC (14 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 35046 byte(s)
Diff to previous 102
*** empty log message ***


Revision 102 - (view) (annotate) - [select for diffs]
Modified Wed Dec 15 07:08:39 2004 UTC (14 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 35297 byte(s)
Diff to previous 100
*** empty log message ***


Revision 100 - (view) (annotate) - [select for diffs]
Modified Wed Dec 15 03:48:48 2004 UTC (14 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 34463 byte(s)
Diff to previous 97
*** empty log message ***


Revision 97 - (view) (annotate) - [select for diffs]
Modified Tue Dec 14 05:39:33 2004 UTC (14 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 35297 byte(s)
Diff to previous 82
*** empty log message ***


Revision 82 - (view) (annotate) - [select for diffs]
Added Tue Oct 26 06:53:54 2004 UTC (14 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/MeshAdapter.cpp
File length: 34463 byte(s)
Initial revision


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