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Revision 3086 - (view) (annotate) - [select for diffs]
Modified Thu Aug 5 05:07:58 2010 UTC (8 years, 8 months ago) by jfenwick
File length: 15888 byte(s)
Diff to previous 3082 , to selected 934
Another pass at removing finley


Revision 3082 - (view) (annotate) - [select for diffs]
Modified Tue Aug 3 06:04:05 2010 UTC (8 years, 8 months ago) by jfenwick
File length: 15888 byte(s)
Copied from: branches/domexper/dudley/src/CPPAdapter/finleycpp.cpp revision 3080
Diff to previous 3080 , to selected 934
Builds but does not import properly

Revision 3080 - (view) (annotate) - [select for diffs]
Modified Tue Aug 3 04:28:03 2010 UTC (8 years, 8 months ago) by jfenwick
Original Path: branches/domexper/dudley/src/CPPAdapter/finleycpp.cpp
File length: 16784 byte(s)
Diff to previous 3079 , to selected 934
inital rename

Revision 3079 - (view) (annotate) - [select for diffs]
Modified Tue Aug 3 04:04:51 2010 UTC (8 years, 8 months ago) by jfenwick
Original Path: branches/domexper/finley/src/CPPAdapter/finleycpp.cpp
File length: 16784 byte(s)
Diff to previous 2881 , to selected 934
Some experiments on finley


Revision 2881 - (view) (annotate) - [select for diffs]
Modified Thu Jan 28 02:03:15 2010 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 16784 byte(s)
Diff to previous 2722 , to selected 934
Don't panic.
Updating copyright stamps


Revision 2722 - (view) (annotate) - [select for diffs]
Modified Fri Oct 16 06:45:01 2009 UTC (9 years, 6 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 16784 byte(s)
Diff to previous 2625 , to selected 934
First steps towards macro elements. at the monent a  macro element is identical to its counterpart of 2nd order.





Revision 2625 - (view) (annotate) - [select for diffs]
Modified Fri Aug 21 06:30:25 2009 UTC (9 years, 8 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 16204 byte(s)
Diff to previous 2548 , to selected 934
Merging changes from new doco branch.
All docstrings are now in reStructured text.
A few email addresses have been fixes as well.

Revision 2548 - (view) (annotate) - [select for diffs]
Modified Mon Jul 20 06:20:06 2009 UTC (9 years, 9 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7709 byte(s)
Diff to previous 2076 , to selected 934
Updating copyright notices

Revision 2076 - (view) (annotate) - [select for diffs]
Modified Thu Nov 20 12:34:17 2008 UTC (10 years, 5 months ago) by phornby
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7709 byte(s)
Diff to previous 2064 , to selected 934

I may get into trouble for this.
boost-python 1.34 does have a docstring_options class,
but does not have a 3 argument constructor for
it. So the test has been modified to 


#if ((BOOST_VERSION/100)%1000 > 34) || (BOOST_VERSION/100000 >1)

If you wish to make things more delicate, one can define a 2 argument construction
of docopt just for 1.34 (with an #elif). Probably not worth the effort frankly.

Hope that this has not broken anything for anyone else. The SVN logs suggest this is a
little fragile.....

Also, please be aware that much of our chemistry interface code, that we wish to use with
escript, makes extensive use of boost python.
Having two different boost versions mucking with the python interpreter sounds
like a really bad idea, I'm sure you'll agree.
The problem is that it is not a simple task for us to build new versions of boost-python
on all our platforms. Consequently, it would be nice to be informed when you guys
intend to upgrade a support library of this nature so that we can plan and allocate
resources to keep up.

Cheers.



Revision 2064 - (view) (annotate) - [select for diffs]
Modified Thu Nov 20 04:06:34 2008 UTC (10 years, 5 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7709 byte(s)
Diff to previous 2061 , to selected 934
docstring_options was added in boost 1.34 - macro'd it out if you are 
compiling earlier than that.


Revision 2061 - (view) (annotate) - [select for diffs]
Modified Wed Nov 19 03:40:21 2008 UTC (10 years, 5 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7567 byte(s)
Diff to previous 1877 , to selected 934
Fixing some warnings from epydoc.
Disabled c++ signatures in python docstrings.
Removed references to Bruce in epydoc and the users guide.

Revision 1877 - (view) (annotate) - [select for diffs]
Modified Tue Oct 14 02:58:39 2008 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7230 byte(s)
Diff to previous 1872 , to selected 934
convection.py checkpointing uses mkdir/rmdir, and under MPI there
was a race condition.

mkdir needs to be run on only one CPU and then a barrier to prevent
working processors from using the directory before it exists.

Added methods domain.MPIBarrier and domain.onMasterProcessor() to
implement this technique.

A more general solution might be possible in the future.


Revision 1872 - (view) (annotate) - [select for diffs]
Modified Mon Oct 13 00:18:55 2008 UTC (10 years, 6 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7100 byte(s)
Diff to previous 1859 , to selected 934
Closing the moreshared branch


Revision 1859 - (view) (annotate) - [select for diffs]
Modified Wed Oct 8 03:03:37 2008 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7036 byte(s)
Diff to previous 1811 , to selected 934
first version of testing for transport solver.

Revision 1811 - (view) (annotate) - [select for diffs]
Modified Thu Sep 25 23:11:13 2008 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6864 byte(s)
Diff to previous 1807 , to selected 934
Copyright updated in all files


Revision 1807 - (view) (annotate) - [select for diffs]
Modified Thu Sep 25 01:04:51 2008 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6899 byte(s)
Diff to previous 1801 , to selected 934
The new MPI parallel ReadMesh is now the default after having passed
all tests both with and without MPI.
If you have been using ReadMesh you should notice no difference.
If you were using ReadMeshMPI then change to ReadMesh.


Revision 1801 - (view) (annotate) - [select for diffs]
Modified Fri Sep 19 01:37:09 2008 UTC (10 years, 7 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7111 byte(s)
Diff to previous 1800 , to selected 934
Fixed serialization of I/O for MPI...code didn't compile without MPI


Revision 1800 - (view) (annotate) - [select for diffs]
Modified Thu Sep 18 05:28:20 2008 UTC (10 years, 7 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7169 byte(s)
Diff to previous 1754 , to selected 934
Serialized parallel I/O when writing mesh or data to NetCDF file on multiple MPI processors.
Added domain method getMPIComm() to complement getMPISize() and getMPIRank().


Revision 1754 - (view) (annotate) - [select for diffs]
Modified Sun Sep 7 22:07:26 2008 UTC (10 years, 7 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7084 byte(s)
Diff to previous 1417 , to selected 934
Added new test suite run_inputOutput.py to systematically test I/O.
Can determine if two domains are same with Fourier analysis.
Added new method getNumDataPointsGlobal to return number of DPs of a distributed mesh.
Reading of tags in ReadMeshMPI failed occasionally, should be more robust now.


Revision 1417 - (view) (annotate) - [select for diffs]
Modified Mon Feb 25 04:45:48 2008 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7002 byte(s)
Diff to previous 1407 , to selected 934
some more work on the transport solver.

Revision 1407 - (view) (annotate) - [select for diffs]
Modified Mon Feb 4 06:45:48 2008 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6998 byte(s)
Diff to previous 1388 , to selected 934
new upwinding algorithm (still fails)

Revision 1388 - (view) (annotate) - [select for diffs]
Modified Fri Jan 11 07:45:58 2008 UTC (11 years, 3 months ago) by trankine
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6910 byte(s)
Diff to previous 1387 , to selected 934
And get the *(&(*&(* name right

Revision 1387 - (view) (annotate) - [select for diffs]
Modified Fri Jan 11 07:45:26 2008 UTC (11 years, 3 months ago) by trankine
Original Path: temp/finley/src/CPPAdapter/finleycpp.cpp
File length: 6910 byte(s)
Diff to previous 1384 , to selected 934
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

Revision 1384 - (view) (annotate) - [select for diffs]
Modified Fri Jan 11 02:29:38 2008 UTC (11 years, 3 months ago) by phornby
Original Path: temp_trunk_copy/finley/src/CPPAdapter/finleycpp.cpp
File length: 6910 byte(s)
Diff to previous 1382 , to selected 934
Make a temp copy of the trunk before checking in the windows changes



Revision 1382 - (view) (annotate) - [select for diffs]
Modified Thu Jan 10 00:21:22 2008 UTC (11 years, 3 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6910 byte(s)
Diff to previous 1370 , to selected 934
some tests got deactivated. they are back now.

Revision 1370 - (view) (annotate) - [select for diffs]
Modified Wed Jan 2 09:21:43 2008 UTC (11 years, 3 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7265 byte(s)
Diff to previous 1364 , to selected 934
explicit upwinding scheme added.

Revision 1364 - (view) (annotate) - [select for diffs]
Modified Mon Dec 17 07:22:45 2007 UTC (11 years, 4 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 7103 byte(s)
Diff to previous 1361 , to selected 934
finley interface to paso's transport solver added.

Revision 1361 - (view) (annotate) - [select for diffs]
Modified Fri Dec 14 09:26:51 2007 UTC (11 years, 4 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6865 byte(s)
Diff to previous 1360 , to selected 934
first steps towards a flux controlled transport solver.

Revision 1360 - (view) (annotate) - [select for diffs]
Modified Thu Dec 13 05:05:00 2007 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6863 byte(s)
Diff to previous 1345 , to selected 934
Partial implementation of ReadMeshMPI.
Will eventually replace ReadMesh but for now has a different name.


Revision 1345 - (view) (annotate) - [select for diffs]
Modified Wed Nov 14 07:53:34 2007 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6651 byte(s)
Diff to previous 1343 , to selected 934
Created LoadMesh to read a mesh from a distributed NetCDF file.
Can read nodes but not elements yet.


Revision 1343 - (view) (annotate) - [select for diffs]
Modified Wed Nov 14 02:48:02 2007 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6647 byte(s)
Diff to previous 1339 , to selected 934
First cut implementation of mesh.dump() using NetCDF.  TagMap not
saved yet.  The code for Points probably works but has not been tested.


Revision 1339 - (view) (annotate) - [select for diffs]
Modified Wed Nov 7 01:53:12 2007 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6648 byte(s)
Diff to previous 1326 , to selected 934
Modified scons target release_src to include lib/ and include/ since
their presence is required for a build.  Modified
mydomain.print_mesh_info(True) to include more useful info about a
distributed domain.  Added mypde.getOperator().print_matrix_info(True)
to tell about a distributed matrix.



Revision 1326 - (view) (annotate) - [select for diffs]
Modified Mon Oct 1 08:10:41 2007 UTC (11 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6528 byte(s)
Diff to previous 1312 , to selected 934
Implemented domain.print_mesh_info() so we can see the distribution of elements & nodes.
Implemented -DBOUNDS_CHECK to catch an error with periodicN=True.


Revision 1312 - (view) (annotate) - [select for diffs]
Modified Mon Sep 24 06:18:44 2007 UTC (11 years, 6 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6460 byte(s)
Diff to previous 1204 , to selected 934
The MPI branch is hereby closed. All future work should be in trunk.

Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.


Revision 1204 - (view) (annotate) - [select for diffs]
Modified Sat Jun 23 11:43:12 2007 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6884 byte(s)
Diff to previous 1107 , to selected 934
a frame for an improved lumping procedure added.

Revision 1107 - (view) (annotate) - [select for diffs]
Modified Thu Apr 19 02:14:18 2007 UTC (12 years ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6806 byte(s)
Diff to previous 1062 , to selected 934
Small bug in ReadMeh call fixed.
Test for typ of verbose argument in pdetools.SaddlePointSolver added.



Revision 1062 - (view) (annotate) - [select for diffs]
Modified Mon Mar 26 06:17:53 2007 UTC (12 years ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6784 byte(s)
Diff to previous 1059 , to selected 934
reduced integration schemes are implemented now for grad, integrate, etc. Tests still to be added.

Revision 1059 - (view) (annotate) - [select for diffs]
Modified Fri Mar 23 11:01:53 2007 UTC (12 years, 1 month ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6681 byte(s)
Diff to previous 1044 , to selected 934
first steps toward reduced element integration order. The escript bit is done but the finley part still needs work.

Revision 1044 - (view) (annotate) - [select for diffs]
Modified Mon Mar 19 07:29:31 2007 UTC (12 years, 1 month ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6537 byte(s)
Diff to previous 934
clear name tagging is supported now.

Revision 934 - (view) (annotate) - [selected]
Modified Tue Jan 23 09:52:45 2007 UTC (12 years, 2 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6303 byte(s)
Diff to previous 888
gmsh file reader for finley

Revision 888 - (view) (annotate) - [select for diffs]
Modified Tue Nov 7 08:31:26 2006 UTC (12 years, 5 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6086 byte(s)
Diff to previous 817 , to selected 934
Problem in Mesh_findMatchingFaces.c fixed:
default tolerance in python interface was set too tight.




Revision 817 - (view) (annotate) - [select for diffs]
Modified Sat Aug 26 03:08:52 2006 UTC (12 years, 7 months ago) by ksteube
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6152 byte(s)
Diff to previous 727 , to selected 934
Can now compile and run with MPI on shake71



Revision 727 - (view) (annotate) - [select for diffs]
Modified Fri May 12 06:31:06 2006 UTC (12 years, 11 months ago) by gross
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6112 byte(s)
Diff to previous 682 , to selected 934
In case of an error in paso a seg fault occured. this was caused by
inproper deallocation of memory in this case. this problem is fixed now.



Revision 682 - (view) (annotate) - [select for diffs]
Modified Mon Mar 27 02:43:09 2006 UTC (13 years ago) by robwdcock
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6065 byte(s)
Diff to previous 474 , to selected 934
+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3



Revision 474 - (view) (annotate) - [select for diffs]
Modified Mon Jan 30 04:23:44 2006 UTC (13 years, 2 months ago) by jgs
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6034 byte(s)
Diff to previous 472 , to selected 934
restructure escript source tree
move src/Data/* -> src
remove inc
modify #includes and cpppath settings accordingly


Revision 472 - (view) (annotate) - [select for diffs]
Modified Fri Jan 27 01:50:59 2006 UTC (13 years, 2 months ago) by jgs
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6047 byte(s)
Diff to previous 471 , to selected 934
rationalise all #includes


Revision 471 - (view) (annotate) - [select for diffs]
Modified Fri Jan 27 01:33:02 2006 UTC (13 years, 2 months ago) by jgs
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6046 byte(s)
Diff to previous 468 , to selected 934
reorganise finley src tree to remove inc dir and src/finley directory


Revision 468 - (view) (annotate) - [select for diffs]
Modified Wed Jan 25 06:50:39 2006 UTC (13 years, 2 months ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter/finleycpp.cpp
File length: 6046 byte(s)
Diff to previous 203 , to selected 934
reorganised esysUtils to remove inc directory

Revision 203 - (view) (annotate) - [select for diffs]
Modified Wed Nov 23 04:36:15 2005 UTC (13 years, 4 months ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter/finleycpp.cpp
File length: 6066 byte(s)
Diff to previous 201 , to selected 934
adjust include file names to allow for new finley source tree structure


Revision 201 - (view) (annotate) - [select for diffs]
Modified Wed Nov 23 04:10:21 2005 UTC (13 years, 4 months ago) by jgs
Original Path: trunk/finley/src/finley/CPPAdapter/finleycpp.cpp
File length: 6135 byte(s)
Diff to previous 155 , to selected 934
copy finleyC and CPPAdapter to finley and finley/CPPAdapter to
facilitate scons builds


Revision 155 - (view) (annotate) - [select for diffs]
Modified Wed Nov 9 02:02:19 2005 UTC (13 years, 5 months ago) by jgs
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File length: 6135 byte(s)
Diff to previous 153 , to selected 934
move all directories from trunk/esys2 into trunk and remove esys2


Revision 153 - (view) (annotate) - [select for diffs]
Modified Tue Oct 25 01:51:20 2005 UTC (13 years, 5 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 6135 byte(s)
Diff to previous 149 , to selected 934
Merge of development branch dev-02 back to main trunk on 2005-10-25


Revision 149 - (view) (annotate) - [select for diffs]
Modified Thu Sep 1 03:31:39 2005 UTC (13 years, 7 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 6032 byte(s)
Diff to previous 123 , to selected 934
Merge of development branch dev-02 back to main trunk on 2005-09-01


Revision 123 - (view) (annotate) - [select for diffs]
Modified Fri Jul 8 04:08:13 2005 UTC (13 years, 9 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 6094 byte(s)
Diff to previous 121 , to selected 934
Merge of development branch back to main trunk on 2005-07-08


Revision 121 - (view) (annotate) - [select for diffs]
Modified Fri May 6 04:26:16 2005 UTC (13 years, 11 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 6037 byte(s)
Diff to previous 110 , to selected 934
Merge of development branch back to main trunk on 2005-05-06


Revision 110 - (view) (annotate) - [select for diffs]
Modified Mon Feb 14 04:14:42 2005 UTC (14 years, 2 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 5953 byte(s)
Diff to previous 108 , to selected 934
*** empty log message ***


Revision 108 - (view) (annotate) - [select for diffs]
Modified Thu Jan 27 06:21:59 2005 UTC (14 years, 2 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 5821 byte(s)
Diff to previous 102 , to selected 934
*** empty log message ***


Revision 102 - (view) (annotate) - [select for diffs]
Added Wed Dec 15 07:08:39 2004 UTC (14 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley/src/CPPAdapter/finleycpp.cpp
File length: 5753 byte(s)
Diff to selected 934
*** empty log message ***


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