/[escript]/branches/domexper/dudley/src/CPPAdapter/dudleycpp.cpp
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trunk/finley/src/finley/CPPAdapter/finleycpp.cpp revision 203 by jgs, Wed Nov 23 04:36:15 2005 UTC trunk/finley/src/CPPAdapter/finleycpp.cpp revision 1754 by ksteube, Sun Sep 7 22:07:26 2008 UTC
# Line 1  Line 1 
 // $Id$  
 /*  
  ******************************************************************************  
  *                                                                            *  
  *       COPYRIGHT ACcESS 2004 -  All Rights Reserved                         *  
  *                                                                            *  
  * This software is the property of ACcESS.  No part of this code             *  
  * may be copied in any form or by any means without the expressed written    *  
  * consent of ACcESS.  Copying, use or modification of this software          *  
  * by any unauthorised person is illegal unless that                          *  
  * person has a software license agreement with ACcESS.                       *  
  *                                                                            *  
  ******************************************************************************  
   
 ******************************************************************************/  
1    
2    /* $Id$ */
3    
4    /*******************************************************
5     *
6     *           Copyright 2003-2007 by ACceSS MNRF
7     *       Copyright 2007 by University of Queensland
8     *
9     *                http://esscc.uq.edu.au
10     *        Primary Business: Queensland, Australia
11     *  Licensed under the Open Software License version 3.0
12     *     http://www.opensource.org/licenses/osl-3.0.php
13     *
14     *******************************************************/
15    
16    #ifdef PASO_MPI
17    #include <mpi.h>
18    #endif
19  extern "C" {  extern "C" {
20  #include "Finley.h"  #include "../Finley.h"
21  }  }
22    
23  #include "MeshAdapter.h"  #include "MeshAdapter.h"
24  #include "MeshAdapterFactory.h"  #include "MeshAdapterFactory.h"
25  #include "SystemMatrixAdapter.h"  #include "SystemMatrixAdapter.h"
26    #include "TransportProblemAdapter.h"
27    
28  #include "esysUtils/EsysException.h"  #include "FinleyAdapterException.h"
29    // #include "esysUtils/EsysException.h"
30  #include "esysUtils/esysExceptionTranslator.h"  #include "esysUtils/esysExceptionTranslator.h"
31    
32  #include "escript/Data/AbstractContinuousDomain.h"  #include "escript/AbstractContinuousDomain.h"
33    
34  #include <boost/python.hpp>  #include <boost/python.hpp>
35  #include <boost/python/module.hpp>  #include <boost/python/module.hpp>
# Line 74  using namespace boost::python; Line 79  using namespace boost::python;
79  BOOST_PYTHON_MODULE(finleycpp)  BOOST_PYTHON_MODULE(finleycpp)
80  {  {
81    
   // def("ReadMesh",finley::readMesh,readMesh_overloads());  
   // def("Brick",finley::brick,brick_overloads());  
   // def("Rectangle",finley::rectangle,rectangle_overloads());  
   // def("Interval",finley::interval,interval_overloads());  
   // def("GlueFaces",finley::glueFaces,glueFaces_overloads());  
   // def("JoinFaces",finley::joinFaces,joinFaces_overloads());  
82    //    //
83    // NOTE: The return_value_policy is necessary for functions that    // NOTE: The return_value_policy is necessary for functions that
84    // return pointers.    // return pointers.
85      //
86      register_exception_translator<finley::FinleyAdapterException>(&(esysUtils::esysExceptionTranslator));
87    
88      def("LoadMesh",finley::loadMesh,
89          (arg("fileName")="file.nc"),
90          return_value_policy<manage_new_object>());
91    def("ReadMesh",finley::readMesh,    def("ReadMesh",finley::readMesh,
92        (arg("fileName"),arg("integrationOrder")=-1),        (arg("fileName")="file.fly",arg("integrationOrder")=-1,  arg("reducedIntegrationOrder")=-1,  arg("optimize")=true),
93          return_value_policy<manage_new_object>());
94      def("ReadMeshMPI",finley::readMeshMPI,
95          (arg("fileName")="file.fly",arg("integrationOrder")=-1,  arg("reducedIntegrationOrder")=-1,  arg("optimize")=true),
96          return_value_policy<manage_new_object>());
97    
98      def("ReadGmsh",finley::readGmsh,
99          (arg("fileName")="file.msh",arg("numDim"), arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1, arg("optimize")=true),
100        return_value_policy<manage_new_object>());        return_value_policy<manage_new_object>());
101    
102    def ("Brick",finley::brick,    def ("Brick",finley::brick,
# Line 93  BOOST_PYTHON_MODULE(finleycpp) Line 104  BOOST_PYTHON_MODULE(finleycpp)
104        arg("order")=1,        arg("order")=1,
105        arg("l0")=1.0,arg("l1")=1.0,arg("l2")=1.0,        arg("l0")=1.0,arg("l1")=1.0,arg("l2")=1.0,
106        arg("periodic0")=false,arg("periodic1")=false,arg("periodic2")=false,        arg("periodic0")=false,arg("periodic1")=false,arg("periodic2")=false,
107        arg("integrationOrder")=-1,        arg("integrationOrder")=-1,  arg("reducedIntegrationOrder")=-1,
108        arg("useElementsOnFace")=false),        arg("useElementsOnFace")=false,
109          arg("useFullElementOrder")=false,
110          arg("optimize")=false),
111        return_value_policy<manage_new_object>());        return_value_policy<manage_new_object>());
112    
113    def ("Rectangle",finley::rectangle,    def ("Rectangle",finley::rectangle,
114        (arg("n0")=1,arg("n1")=1,arg("order")=1,        (arg("n0")=1,arg("n1")=1,arg("order")=1,
115        arg("l0")=1.0,arg("l1")=1.0,        arg("l0")=1.0,arg("l1")=1.0,
116        arg("periodic0")=false,arg("periodic1")=false,        arg("periodic0")=false,arg("periodic1")=false,
117        arg("integrationOrder")=-1,        arg("integrationOrder")=-1,  arg("reducedIntegrationOrder")=-1,
118        arg("useElementsOnFace")=false),        arg("useElementsOnFace")=false,
119        return_value_policy<manage_new_object>());        arg("useFullElementOrder")=false,
120          arg("optimize")=false),
   def("Interval",finley::interval,  
       (arg("n1")=1,arg("order")=1,  
       arg("l1")=1.0,arg("periodic0")=false,  
       arg("integrationOrder")=-1,  
       arg("useElementsOnFace")=false),  
121        return_value_policy<manage_new_object>());        return_value_policy<manage_new_object>());
122    
123    def("Merge",finley::meshMerge,    def("Merge",finley::meshMerge,
# Line 117  BOOST_PYTHON_MODULE(finleycpp) Line 125  BOOST_PYTHON_MODULE(finleycpp)
125    
126    def("GlueFaces",finley::glueFaces,    def("GlueFaces",finley::glueFaces,
127        (arg("safetyFactor")=0.2,        (arg("safetyFactor")=0.2,
128        arg("tolerance")=std::numeric_limits<double>::epsilon()),        arg("tolerance")=1.e-8,
129          arg("optimize")=true),
130        return_value_policy<manage_new_object>());        return_value_policy<manage_new_object>());
131    
132    def("JoinFaces",finley::joinFaces,    def("JoinFaces",finley::joinFaces,
133        (arg("safetyFactor")=0.2,        (arg("safetyFactor")=0.2,
134        arg("tolerance")=std::numeric_limits<double>::epsilon()),        arg("tolerance")=1.e-8,
135          arg("optimize")=true),
136        return_value_policy<manage_new_object>());        return_value_policy<manage_new_object>());
137    
138    register_exception_translator<esysUtils::EsysException>(&esysUtils::esysExceptionTranslator);  
139    
140    class_<finley::MeshAdapter, bases<escript::AbstractContinuousDomain> >    class_<finley::MeshAdapter, bases<escript::AbstractContinuousDomain> >
141        ("MeshAdapter",init<optional <Finley_Mesh*> >())        ("MeshAdapter",init<optional <Finley_Mesh*> >())
142        .def(init<const finley::MeshAdapter&>())        .def(init<const finley::MeshAdapter&>())
143        .def("write",&finley::MeshAdapter::write)        .def("write",&finley::MeshAdapter::write)
144          .def("print_mesh_info",&finley::MeshAdapter::Print_Mesh_Info,(arg("full")=false))
145          .def("dump",&finley::MeshAdapter::dump)
146        .def("getDescription",&finley::MeshAdapter::getDescription)        .def("getDescription",&finley::MeshAdapter::getDescription)
147        .def("getDim",&finley::MeshAdapter::getDim)        .def("getDim",&finley::MeshAdapter::getDim)
148        .def("getDataShape",&finley::MeshAdapter::getDataShape)        .def("getDataShape",&finley::MeshAdapter::getDataShape)
149          .def("getNumDataPointsGlobal",&finley::MeshAdapter::getNumDataPointsGlobal)
150        .def("addPDEToSystem",&finley::MeshAdapter::addPDEToSystem)        .def("addPDEToSystem",&finley::MeshAdapter::addPDEToSystem)
151          .def("addPDEToLumpedSystem",&finley::MeshAdapter::addPDEToLumpedSystem)
152        .def("addPDEToRHS",&finley::MeshAdapter::addPDEToRHS)        .def("addPDEToRHS",&finley::MeshAdapter::addPDEToRHS)
153          .def("addPDEToTransportProblem",&finley::MeshAdapter::addPDEToTransportProblem)
154        .def("newOperator",&finley::MeshAdapter::newSystemMatrix)        .def("newOperator",&finley::MeshAdapter::newSystemMatrix)
155          .def("newTransportProblem",&finley::MeshAdapter::newTransportProblem)
156        .def("getSystemMatrixTypeId",&finley::MeshAdapter::getSystemMatrixTypeId)        .def("getSystemMatrixTypeId",&finley::MeshAdapter::getSystemMatrixTypeId)
157        .def("setX",&finley::MeshAdapter::setNewX)        .def("setX",&finley::MeshAdapter::setNewX)
158        .def("getX",&finley::MeshAdapter::getX)        .def("getX",&finley::MeshAdapter::getX)
159        .def("getNormal",&finley::MeshAdapter::getNormal)        .def("getNormal",&finley::MeshAdapter::getNormal)
160        .def("getSize",&finley::MeshAdapter::getSize)        .def("getSize",&finley::MeshAdapter::getSize)
161        .def("saveDX",&finley::MeshAdapter::saveDX)        .def("saveDX",&finley::MeshAdapter::saveDX)
162        .def("saveVTK",&finley::MeshAdapter::saveVTK);        .def("saveVTK",&finley::MeshAdapter::saveVTK)
163          .def("setTagMap",&finley::MeshAdapter::setTagMap)
164          .def("getTag",&finley::MeshAdapter::getTag)
165          .def("isValidTagName",&finley::MeshAdapter::isValidTagName)
166          .def("showTagNames",&finley::MeshAdapter::showTagNames)
167          .def("getMPISize",&finley::MeshAdapter::getMPISize)
168          .def("getMPIRank",&finley::MeshAdapter::getMPIRank);
169    
170    class_<finley::SystemMatrixAdapter, bases<escript::AbstractSystemMatrix> >    class_<finley::SystemMatrixAdapter, bases<escript::AbstractSystemMatrix> >
171        ("OperatorAdapter",no_init)        ("OperatorAdapter",no_init)
172          .def("print_matrix_info",&finley::SystemMatrixAdapter::Print_Matrix_Info,(arg("full")=false))
173        .def("nullifyRowsAndCols",&finley::SystemMatrixAdapter::nullifyRowsAndCols)        .def("nullifyRowsAndCols",&finley::SystemMatrixAdapter::nullifyRowsAndCols)
174        .def("resetValues",&finley::SystemMatrixAdapter::resetValues)        .def("resetValues",&finley::SystemMatrixAdapter::resetValues)
175        .def("saveMM",&finley::SystemMatrixAdapter::saveMM)        .def("saveMM",&finley::SystemMatrixAdapter::saveMM)
176        .def("saveHB",&finley::SystemMatrixAdapter::saveHB);        .def("saveHB",&finley::SystemMatrixAdapter::saveHB);
177    
178      class_<finley::TransportProblemAdapter, bases<escript::AbstractTransportProblem> >
179          ("TransportProblemAdapter",no_init)
180          .def("getSafeTimeStepSize",&finley::TransportProblemAdapter::getSafeTimeStepSize)
181          .def("resetTransport",&finley::TransportProblemAdapter::resetTransport);
182  }  }

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