/[escript]/branches/domexper/dudley/src/CPPAdapter/dudleycpp.cpp
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revision 471 by jgs, Fri Jan 27 01:33:02 2006 UTC revision 1807 by ksteube, Thu Sep 25 01:04:51 2008 UTC
# Line 1  Line 1 
 // $Id$  
 /*  
  ******************************************************************************  
  *                                                                            *  
  *       COPYRIGHT ACcESS 2004 -  All Rights Reserved                         *  
  *                                                                            *  
  * This software is the property of ACcESS.  No part of this code             *  
  * may be copied in any form or by any means without the expressed written    *  
  * consent of ACcESS.  Copying, use or modification of this software          *  
  * by any unauthorised person is illegal unless that                          *  
  * person has a software license agreement with ACcESS.                       *  
  *                                                                            *  
  ******************************************************************************  
   
 ******************************************************************************/  
1    
2    /* $Id$ */
3    
4    /*******************************************************
5     *
6     *           Copyright 2003-2007 by ACceSS MNRF
7     *       Copyright 2007 by University of Queensland
8     *
9     *                http://esscc.uq.edu.au
10     *        Primary Business: Queensland, Australia
11     *  Licensed under the Open Software License version 3.0
12     *     http://www.opensource.org/licenses/osl-3.0.php
13     *
14     *******************************************************/
15    
16    #ifdef PASO_MPI
17    #include <mpi.h>
18    #include "paso/Paso_MPI.h"
19    #endif
20  extern "C" {  extern "C" {
21  #include "Finley.h"  #include "../Finley.h"
22  }  }
23    
24  #include "MeshAdapter.h"  #include "MeshAdapter.h"
25  #include "MeshAdapterFactory.h"  #include "MeshAdapterFactory.h"
26  #include "SystemMatrixAdapter.h"  #include "SystemMatrixAdapter.h"
27    #include "TransportProblemAdapter.h"
28    
29  #include "EsysException.h"  #include "FinleyAdapterException.h"
30  #include "esysExceptionTranslator.h"  // #include "esysUtils/EsysException.h"
31    #include "esysUtils/esysExceptionTranslator.h"
32    
33  #include "escript/Data/AbstractContinuousDomain.h"  #include "escript/AbstractContinuousDomain.h"
34    
35  #include <boost/python.hpp>  #include <boost/python.hpp>
36  #include <boost/python/module.hpp>  #include <boost/python/module.hpp>
# Line 74  using namespace boost::python; Line 80  using namespace boost::python;
80  BOOST_PYTHON_MODULE(finleycpp)  BOOST_PYTHON_MODULE(finleycpp)
81  {  {
82    
   // def("ReadMesh",finley::readMesh,readMesh_overloads());  
   // def("Brick",finley::brick,brick_overloads());  
   // def("Rectangle",finley::rectangle,rectangle_overloads());  
   // def("Interval",finley::interval,interval_overloads());  
   // def("GlueFaces",finley::glueFaces,glueFaces_overloads());  
   // def("JoinFaces",finley::joinFaces,joinFaces_overloads());  
83    //    //
84    // NOTE: The return_value_policy is necessary for functions that    // NOTE: The return_value_policy is necessary for functions that
85    // return pointers.    // return pointers.
86      //
87      register_exception_translator<finley::FinleyAdapterException>(&(esysUtils::esysExceptionTranslator));
88    
89      def("LoadMesh",finley::loadMesh,
90          (arg("fileName")="file.nc"),
91          return_value_policy<manage_new_object>());
92    def("ReadMesh",finley::readMesh,    def("ReadMesh",finley::readMesh,
93        (arg("fileName"),arg("integrationOrder")=-1),        (arg("fileName")="file.fly",arg("integrationOrder")=-1,  arg("reducedIntegrationOrder")=-1,  arg("optimize")=true),
94          return_value_policy<manage_new_object>());
95    
96      def("ReadGmsh",finley::readGmsh,
97          (arg("fileName")="file.msh",arg("numDim"), arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1, arg("optimize")=true),
98        return_value_policy<manage_new_object>());        return_value_policy<manage_new_object>());
99    
100    def ("Brick",finley::brick,    def ("Brick",finley::brick,
# Line 93  BOOST_PYTHON_MODULE(finleycpp) Line 102  BOOST_PYTHON_MODULE(finleycpp)
102        arg("order")=1,        arg("order")=1,
103        arg("l0")=1.0,arg("l1")=1.0,arg("l2")=1.0,        arg("l0")=1.0,arg("l1")=1.0,arg("l2")=1.0,
104        arg("periodic0")=false,arg("periodic1")=false,arg("periodic2")=false,        arg("periodic0")=false,arg("periodic1")=false,arg("periodic2")=false,
105        arg("integrationOrder")=-1,        arg("integrationOrder")=-1,  arg("reducedIntegrationOrder")=-1,
106        arg("useElementsOnFace")=false),        arg("useElementsOnFace")=false,
107          arg("useFullElementOrder")=false,
108          arg("optimize")=false),
109        return_value_policy<manage_new_object>());        return_value_policy<manage_new_object>());
110    
111    def ("Rectangle",finley::rectangle,    def ("Rectangle",finley::rectangle,
112        (arg("n0")=1,arg("n1")=1,arg("order")=1,        (arg("n0")=1,arg("n1")=1,arg("order")=1,
113        arg("l0")=1.0,arg("l1")=1.0,        arg("l0")=1.0,arg("l1")=1.0,
114        arg("periodic0")=false,arg("periodic1")=false,        arg("periodic0")=false,arg("periodic1")=false,
115        arg("integrationOrder")=-1,        arg("integrationOrder")=-1,  arg("reducedIntegrationOrder")=-1,
116        arg("useElementsOnFace")=false),        arg("useElementsOnFace")=false,
117        return_value_policy<manage_new_object>());        arg("useFullElementOrder")=false,
118          arg("optimize")=false),
   def("Interval",finley::interval,  
       (arg("n1")=1,arg("order")=1,  
       arg("l1")=1.0,arg("periodic0")=false,  
       arg("integrationOrder")=-1,  
       arg("useElementsOnFace")=false),  
119        return_value_policy<manage_new_object>());        return_value_policy<manage_new_object>());
120    
121    def("Merge",finley::meshMerge,    def("Merge",finley::meshMerge,
# Line 117  BOOST_PYTHON_MODULE(finleycpp) Line 123  BOOST_PYTHON_MODULE(finleycpp)
123    
124    def("GlueFaces",finley::glueFaces,    def("GlueFaces",finley::glueFaces,
125        (arg("safetyFactor")=0.2,        (arg("safetyFactor")=0.2,
126        arg("tolerance")=std::numeric_limits<double>::epsilon()),        arg("tolerance")=1.e-8,
127          arg("optimize")=true),
128        return_value_policy<manage_new_object>());        return_value_policy<manage_new_object>());
129    
130    def("JoinFaces",finley::joinFaces,    def("JoinFaces",finley::joinFaces,
131        (arg("safetyFactor")=0.2,        (arg("safetyFactor")=0.2,
132        arg("tolerance")=std::numeric_limits<double>::epsilon()),        arg("tolerance")=1.e-8,
133          arg("optimize")=true),
134        return_value_policy<manage_new_object>());        return_value_policy<manage_new_object>());
135    
136    register_exception_translator<esysUtils::EsysException>(&esysUtils::esysExceptionTranslator);  
137    
138    class_<finley::MeshAdapter, bases<escript::AbstractContinuousDomain> >    class_<finley::MeshAdapter, bases<escript::AbstractContinuousDomain> >
139        ("MeshAdapter",init<optional <Finley_Mesh*> >())        ("MeshAdapter",init<optional <Finley_Mesh*> >())
140        .def(init<const finley::MeshAdapter&>())        .def(init<const finley::MeshAdapter&>())
141        .def("write",&finley::MeshAdapter::write)        .def("write",&finley::MeshAdapter::write)
142          .def("print_mesh_info",&finley::MeshAdapter::Print_Mesh_Info,(arg("full")=false))
143          .def("dump",&finley::MeshAdapter::dump)
144        .def("getDescription",&finley::MeshAdapter::getDescription)        .def("getDescription",&finley::MeshAdapter::getDescription)
145        .def("getDim",&finley::MeshAdapter::getDim)        .def("getDim",&finley::MeshAdapter::getDim)
146        .def("getDataShape",&finley::MeshAdapter::getDataShape)        .def("getDataShape",&finley::MeshAdapter::getDataShape)
147          .def("getNumDataPointsGlobal",&finley::MeshAdapter::getNumDataPointsGlobal)
148        .def("addPDEToSystem",&finley::MeshAdapter::addPDEToSystem)        .def("addPDEToSystem",&finley::MeshAdapter::addPDEToSystem)
149          .def("addPDEToLumpedSystem",&finley::MeshAdapter::addPDEToLumpedSystem)
150        .def("addPDEToRHS",&finley::MeshAdapter::addPDEToRHS)        .def("addPDEToRHS",&finley::MeshAdapter::addPDEToRHS)
151          .def("addPDEToTransportProblem",&finley::MeshAdapter::addPDEToTransportProblem)
152        .def("newOperator",&finley::MeshAdapter::newSystemMatrix)        .def("newOperator",&finley::MeshAdapter::newSystemMatrix)
153          .def("newTransportProblem",&finley::MeshAdapter::newTransportProblem)
154        .def("getSystemMatrixTypeId",&finley::MeshAdapter::getSystemMatrixTypeId)        .def("getSystemMatrixTypeId",&finley::MeshAdapter::getSystemMatrixTypeId)
155        .def("setX",&finley::MeshAdapter::setNewX)        .def("setX",&finley::MeshAdapter::setNewX)
156        .def("getX",&finley::MeshAdapter::getX)        .def("getX",&finley::MeshAdapter::getX)
157        .def("getNormal",&finley::MeshAdapter::getNormal)        .def("getNormal",&finley::MeshAdapter::getNormal)
158        .def("getSize",&finley::MeshAdapter::getSize)        .def("getSize",&finley::MeshAdapter::getSize)
159        .def("saveDX",&finley::MeshAdapter::saveDX)        .def("saveDX",&finley::MeshAdapter::saveDX)
160        .def("saveVTK",&finley::MeshAdapter::saveVTK);        .def("saveVTK",&finley::MeshAdapter::saveVTK)
161          .def("setTagMap",&finley::MeshAdapter::setTagMap)
162          .def("getTag",&finley::MeshAdapter::getTag)
163          .def("isValidTagName",&finley::MeshAdapter::isValidTagName)
164          .def("showTagNames",&finley::MeshAdapter::showTagNames)
165          .def("getMPISize",&finley::MeshAdapter::getMPISize)
166          .def("getMPIRank",&finley::MeshAdapter::getMPIRank);
167    
168    class_<finley::SystemMatrixAdapter, bases<escript::AbstractSystemMatrix> >    class_<finley::SystemMatrixAdapter, bases<escript::AbstractSystemMatrix> >
169        ("OperatorAdapter",no_init)        ("OperatorAdapter",no_init)
170          .def("print_matrix_info",&finley::SystemMatrixAdapter::Print_Matrix_Info,(arg("full")=false))
171        .def("nullifyRowsAndCols",&finley::SystemMatrixAdapter::nullifyRowsAndCols)        .def("nullifyRowsAndCols",&finley::SystemMatrixAdapter::nullifyRowsAndCols)
172        .def("resetValues",&finley::SystemMatrixAdapter::resetValues)        .def("resetValues",&finley::SystemMatrixAdapter::resetValues)
173        .def("saveMM",&finley::SystemMatrixAdapter::saveMM)        .def("saveMM",&finley::SystemMatrixAdapter::saveMM)
174        .def("saveHB",&finley::SystemMatrixAdapter::saveHB);        .def("saveHB",&finley::SystemMatrixAdapter::saveHB);
175    
176      class_<finley::TransportProblemAdapter, bases<escript::AbstractTransportProblem> >
177          ("TransportProblemAdapter",no_init)
178          .def("getSafeTimeStepSize",&finley::TransportProblemAdapter::getSafeTimeStepSize)
179          .def("resetTransport",&finley::TransportProblemAdapter::resetTransport);
180  }  }

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