/[escript]/branches/domexper/dudley/src/CPPAdapter/dudleycpp.cpp
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Revision 2548 - (show annotations)
Mon Jul 20 06:20:06 2009 UTC (9 years, 11 months ago) by jfenwick
Original Path: trunk/finley/src/CPPAdapter/finleycpp.cpp
File size: 7709 byte(s)
Updating copyright notices
1
2 /*******************************************************
3 *
4 * Copyright (c) 2003-2009 by University of Queensland
5 * Earth Systems Science Computational Center (ESSCC)
6 * http://www.uq.edu.au/esscc
7 *
8 * Primary Business: Queensland, Australia
9 * Licensed under the Open Software License version 3.0
10 * http://www.opensource.org/licenses/osl-3.0.php
11 *
12 *******************************************************/
13
14
15 #ifdef PASO_MPI
16 #include <mpi.h>
17 #include "paso/Paso_MPI.h"
18 #endif
19 extern "C" {
20 #include "../Finley.h"
21 }
22
23 #include "MeshAdapter.h"
24 #include "MeshAdapterFactory.h"
25 #include "SystemMatrixAdapter.h"
26 #include "TransportProblemAdapter.h"
27
28 #include "FinleyAdapterException.h"
29 // #include "esysUtils/EsysException.h"
30 #include "esysUtils/esysExceptionTranslator.h"
31
32 #include "escript/AbstractContinuousDomain.h"
33
34 #include <boost/python.hpp>
35 #include <boost/python/module.hpp>
36 #include <boost/python/def.hpp>
37 #include <boost/python/detail/defaults_gen.hpp>
38 #include <boost/version.hpp>
39
40 using namespace boost::python;
41
42 /**
43 \page finley Finley
44 Finley is the python module name that contains the interfaces
45 to the C++ wrapper to finley.
46
47 \version 1.0.0
48
49 \section class_desc Class Description:
50 Data
51
52 \section class_limits Class Limitations:
53 None
54
55 \section class_conds Class Conditions of Use:
56 None
57
58 \section throws Throws:
59 None
60
61 */
62
63 //
64 // The BOOST_PYTHON_FUNCTION_OVERLOADS macro generates function overloads for optional
65 // arguments to the respective finley functions.
66 // !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
67 //
68 // NOTE: If the number of arguments to the finley functions change
69 // the magic numbers in the BOOST_PYTHON_FUNCTION_OVERLOADS call
70 // must change.
71 //
72 // !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
73 // BOOST_PYTHON_FUNCTION_OVERLOADS(readMesh_overloads,finley::readMesh,1,2)
74 // BOOST_PYTHON_FUNCTION_OVERLOADS(brick_overloads,finley::brick,0,12)
75 // BOOST_PYTHON_FUNCTION_OVERLOADS(rectangle_overloads,finley::rectangle,0,9)
76 // BOOST_PYTHON_FUNCTION_OVERLOADS(interval_overloads,finley::interval,0,6)
77 // BOOST_PYTHON_FUNCTION_OVERLOADS(glueFaces_overloads,finley::glueFaces,1,3)
78 // BOOST_PYTHON_FUNCTION_OVERLOADS(joinFaces_overloads,finley::joinFaces,1,3)
79
80 BOOST_PYTHON_MODULE(finleycpp)
81 {
82 // This feature was added in boost v1.34
83 #if ((BOOST_VERSION/100)%1000 > 34) || (BOOST_VERSION/100000 >1)
84 // params are: bool show_user_defined, bool show_py_signatures, bool show_cpp_signatures
85 docstring_options docopt(true, true, false);
86 #endif
87
88 //
89 // NOTE: The return_value_policy is necessary for functions that
90 // return pointers.
91 //
92 register_exception_translator<finley::FinleyAdapterException>(&(esysUtils::esysExceptionTranslator));
93
94 def("LoadMesh",finley::loadMesh,
95 (arg("fileName")="file.nc")
96 /* ,return_value_policy<manage_new_object>());*/
97 );
98
99 def("ReadMesh",finley::readMesh,
100 (arg("fileName")="file.fly",arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1, arg("optimize")=true)
101 /* ,return_value_policy<manage_new_object>());*/
102 );
103
104 def("ReadGmsh",finley::readGmsh,
105 (arg("fileName")="file.msh",arg("numDim"), arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1, arg("optimize")=true)
106 // ,return_value_policy<manage_new_object>());
107 );
108
109 def ("Brick",finley::brick,
110 (arg("n0")=1,arg("n1")=1,arg("n2")=1,
111 arg("order")=1,
112 arg("l0")=1.0,arg("l1")=1.0,arg("l2")=1.0,
113 arg("periodic0")=false,arg("periodic1")=false,arg("periodic2")=false,
114 arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1,
115 arg("useElementsOnFace")=false,
116 arg("useFullElementOrder")=false,
117 arg("optimize")=false)
118 // ,return_value_policy<manage_new_object>());
119 );
120
121 def ("Rectangle",finley::rectangle,
122 (arg("n0")=1,arg("n1")=1,arg("order")=1,
123 arg("l0")=1.0,arg("l1")=1.0,
124 arg("periodic0")=false,arg("periodic1")=false,
125 arg("integrationOrder")=-1, arg("reducedIntegrationOrder")=-1,
126 arg("useElementsOnFace")=false,
127 arg("useFullElementOrder")=false,
128 arg("optimize")=false)
129 // ,return_value_policy<manage_new_object>());
130 );
131
132 def("Merge",finley::meshMerge
133 // ,return_value_policy<manage_new_object>());
134 );
135
136 def("GlueFaces",finley::glueFaces,
137 (arg("safetyFactor")=0.2,
138 arg("tolerance")=1.e-8,
139 arg("optimize")=true)
140 // ,return_value_policy<manage_new_object>());
141 );
142
143 def("JoinFaces",finley::joinFaces,
144 (arg("safetyFactor")=0.2,
145 arg("tolerance")=1.e-8,
146 arg("optimize")=true)
147 // ,return_value_policy<manage_new_object>());
148 );
149
150
151 class_<finley::MeshAdapter, bases<escript::AbstractContinuousDomain> >
152 ("MeshAdapter","A concrete class representing a domain. For more details, please consult the c++ documentation.",init<optional <Finley_Mesh*> >())
153 .def(init<const finley::MeshAdapter&>())
154 .def("write",&finley::MeshAdapter::write)
155 .def("print_mesh_info",&finley::MeshAdapter::Print_Mesh_Info,(arg("full")=false))
156 .def("dump",&finley::MeshAdapter::dump)
157 .def("getDescription",&finley::MeshAdapter::getDescription)
158 .def("getDim",&finley::MeshAdapter::getDim)
159 .def("getDataShape",&finley::MeshAdapter::getDataShape)
160 .def("getNumDataPointsGlobal",&finley::MeshAdapter::getNumDataPointsGlobal)
161 .def("addPDEToSystem",&finley::MeshAdapter::addPDEToSystem)
162 .def("addPDEToLumpedSystem",&finley::MeshAdapter::addPDEToLumpedSystem)
163 .def("addPDEToRHS",&finley::MeshAdapter::addPDEToRHS)
164 .def("addPDEToTransportProblem",&finley::MeshAdapter::addPDEToTransportProblem)
165 .def("newOperator",&finley::MeshAdapter::newSystemMatrix)
166 .def("newTransportProblem",&finley::MeshAdapter::newTransportProblem)
167 .def("getSystemMatrixTypeId",&finley::MeshAdapter::getSystemMatrixTypeId)
168 .def("getTransportTypeId",&finley::MeshAdapter::getTransportTypeId)
169 .def("setX",&finley::MeshAdapter::setNewX)
170 .def("getX",&finley::MeshAdapter::getX)
171 .def("getNormal",&finley::MeshAdapter::getNormal)
172 .def("getSize",&finley::MeshAdapter::getSize)
173 .def("saveDX",&finley::MeshAdapter::saveDX)
174 .def("saveVTK",&finley::MeshAdapter::saveVTK)
175 .def("setTagMap",&finley::MeshAdapter::setTagMap)
176 .def("getTag",&finley::MeshAdapter::getTag)
177 .def("isValidTagName",&finley::MeshAdapter::isValidTagName)
178 .def("showTagNames",&finley::MeshAdapter::showTagNames)
179 .def("getMPISize",&finley::MeshAdapter::getMPISize)
180 .def("getMPIRank",&finley::MeshAdapter::getMPIRank)
181 .def("MPIBarrier",&finley::MeshAdapter::MPIBarrier)
182 .def("onMasterProcessor",&finley::MeshAdapter::onMasterProcessor);
183
184 class_<finley::SystemMatrixAdapter, bases<escript::AbstractSystemMatrix> >
185 ("OperatorAdapter","A concrete class representing an operator. For more details, please see the c++ documentation.", no_init)
186 .def("print_matrix_info",&finley::SystemMatrixAdapter::Print_Matrix_Info,(arg("full")=false))
187 .def("nullifyRowsAndCols",&finley::SystemMatrixAdapter::nullifyRowsAndCols)
188 .def("resetValues",&finley::SystemMatrixAdapter::resetValues)
189 .def("saveMM",&finley::SystemMatrixAdapter::saveMM)
190 .def("saveHB",&finley::SystemMatrixAdapter::saveHB);
191
192 class_<finley::TransportProblemAdapter, bases<escript::AbstractTransportProblem> >
193 ("TransportProblemAdapter","",no_init)
194 .def("getSafeTimeStepSize",&finley::TransportProblemAdapter::getSafeTimeStepSize)
195 .def("getUnlimitedTimeStepSize",&finley::TransportProblemAdapter::getUnlimitedTimeStepSize)
196 .def("resetTransport",&finley::TransportProblemAdapter::resetTransport);
197 }

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