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revision 3024 by jfenwick, Wed May 5 01:12:32 2010 UTC revision 4726 by sshaw, Fri Mar 7 00:23:44 2014 UTC
# Line 1  Line 1 
1    ##############################################################################
 ########################################################  
2  #  #
3  # Copyright (c) 2003-2010 by University of Queensland  # Copyright (c) 2003-2014 by University of Queensland
4  # Earth Systems Science Computational Center (ESSCC)  # http://www.uq.edu.au
 # http://www.uq.edu.au/esscc  
5  #  #
6  # Primary Business: Queensland, Australia  # Primary Business: Queensland, Australia
7  # Licensed under the Open Software License version 3.0  # Licensed under the Open Software License version 3.0
8  # http://www.opensource.org/licenses/osl-3.0.php  # http://www.opensource.org/licenses/osl-3.0.php
9  #  #
10  ########################################################  # Development until 2012 by Earth Systems Science Computational Center (ESSCC)
11    # Development 2012-2013 by School of Earth Sciences
12    # Development from 2014 by Centre for Geoscience Computing (GeoComp)
13  EnsureSConsVersion(0,96,91)  #
14  EnsurePythonVersion(2,3)  ##############################################################################
   
 import sys, os, re, socket, platform, stat  
 # For copy()  
 import shutil  
   
 # Add our extensions  
 if os.path.isdir('scons'): sys.path.append('scons')  
 import scons_extensions  
15    
16  # Use /usr/lib64 if available, else /usr/lib  EnsureSConsVersion(0,98,1)
17  usr_lib = '/usr/lib'  EnsurePythonVersion(2,5)
 if os.path.isfile('/usr/lib64/libc.so'): usr_lib = '/usr/lib64'  
18    
19  # The string python2.4 or python2.5  import atexit, sys, os, platform, re
20  python_version = 'python%s.%s' % (sys.version_info[0], sys.version_info[1])  from distutils import sysconfig
21    from dependencies import *
22    from site_init import *
23    
24    # Version number to check for in options file. Increment when new features are
25    # added or existing options changed.
26    REQUIRED_OPTS_VERSION=201
27    
28  # MS Windows support, many thanks to PH  # MS Windows support, many thanks to PH
29  IS_WINDOWS_PLATFORM = (os.name== "nt")  IS_WINDOWS = (os.name == 'nt')
30    
31  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)  IS_OSX = (os.uname()[0] == 'Darwin')
32    
33  #Holds names of variables from the calling environment which need to be passed  ########################## Determine options file ############################
34  #to tools  # 1. command line
35  env_export=[]  # 2. scons/<hostname>_options.py
36    # 3. name as part of a cluster
 #Determine where to read options from use:  
 #1. command line  
 #2. scons/<hostname>_options.py  
 #3. name as part of a cluster  
37  options_file=ARGUMENTS.get('options_file', None)  options_file=ARGUMENTS.get('options_file', None)
 effective_hostname=socket.gethostname().split('.')[0]  
38  if not options_file:  if not options_file:
39    mangledhostname = re.sub("[^0-9a-zA-Z]", "_", effective_hostname)      ext_dir = os.path.join(os.getcwd(), 'scons')
40    options_file = os.path.join("scons",mangledhostname+"_options.py")      hostname = platform.node().split('.')[0]
41    #If there is no options file with that name see if there is a substitute      for name in hostname, effectiveName(hostname):
42    if not os.path.isfile(options_file):          mangledhostname = re.sub('[^0-9a-zA-Z]', '_', hostname)
43      effective_hostname = scons_extensions.effectiveName(effective_hostname)          options_file = os.path.join(ext_dir, mangledhostname+'_options.py')
44      mangledhostname = re.sub("[^0-9a-zA-Z]", "_", effective_hostname)          if os.path.isfile(options_file): break
     options_file = os.path.join("scons",mangledhostname+"_options.py")  
45    
46  if not os.path.isfile(options_file):  if not os.path.isfile(options_file):
47    print "Options file not found (expected '%s')" % options_file      print("\nWARNING:\nOptions file %s" % options_file)
48    options_file = False      print("not found! Default options will be used which is most likely suboptimal.")
49  else:      print("We recommend that you copy one of the TEMPLATE files in the scons/")
50    print "Options file is", options_file      print("subdirectory and customize it to your needs.\n")
51        options_file = None
52  #Does our scons support the newer Variables class or do we need to use Options?  
53    ############################### Build options ################################
54  try:  
55     dummyvar=Variables  default_prefix='/usr'
56     opts = Variables(options_file, ARGUMENTS)  mpi_flavours=('no', 'none', 'MPT', 'MPICH', 'MPICH2', 'OPENMPI', 'INTELMPI')
57     adder = opts.AddVariables  lapack_flavours=('none', 'clapack', 'mkl')
58  except:  
59     opts = Options(options_file, ARGUMENTS)  vars = Variables(options_file, ARGUMENTS)
60     adder = opts.AddOptions  vars.AddVariables(
61     BoolVariable = BoolOption    PathVariable('options_file', 'Path to options file', options_file, PathVariable.PathIsFile),
62      PathVariable('prefix', 'Installation prefix', Dir('#.').abspath, PathVariable.PathIsDirCreate),
63  ############ Load build options ################################    PathVariable('build_dir', 'Top-level build directory', Dir('#/build').abspath, PathVariable.PathIsDirCreate),
64      BoolVariable('verbose', 'Output full compile/link lines', False),
65  adder(  # Compiler/Linker options
66  #opts.AddOptions(    ('cxx', 'Path to C++ compiler', 'default'),
67  # Where to install esys stuff    ('cc_flags', 'Base C++ compiler flags', 'default'),
68    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),    ('cc_optim', 'Additional C++ flags for a non-debug build', 'default'),
69    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),    ('cc_debug', 'Additional C++ flags for a debug build', 'default'),
   ('bininstall', 'where the esys binaries will be installed',            os.path.join(prefix,'bin')),  
   ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),  
   ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),  
 # Compilation options  
   BoolVariable('dodebug', 'For backwards compatibility', 'no'),  
   BoolVariable('usedebug', 'Do you want a debug build?', 'no'),  
   BoolVariable('usevtk', 'Do you want to use VTK?', 'yes'),  
   ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),  
   ('cc', 'path to C compiler', 'DEFAULT'),  
   ('cxx', 'path to C++ compiler', 'DEFAULT'),  
   ('win_cc_name', 'windows C compiler name if needed', 'msvc'),  
   # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below  
   ('cc_flags', 'C/C++ compiler flags to use', '-DEFAULT_1'),  
   ('cc_optim', 'C/C++ optimization flags to use', '-DEFAULT_2'),  
   ('cc_debug', 'C/C++ debug flags to use', '-DEFAULT_3'),  
   ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),  
   ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),  
   ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),  
   ('cc_extra', 'Extra C compiler flags', ''),  
70    ('cxx_extra', 'Extra C++ compiler flags', ''),    ('cxx_extra', 'Extra C++ compiler flags', ''),
71    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
72    ('sys_libs', 'System libraries to link with', []),    BoolVariable('werror','Treat compiler warnings as errors', True),
73    ('ar_flags', 'Static library archiver flags to use', ''),    BoolVariable('debug', 'Compile with debug flags', False),
74    BoolVariable('useopenmp', 'Compile parallel version using OpenMP', 'no'),    BoolVariable('openmp', 'Compile parallel version using OpenMP', False),
75    BoolVariable('usepedantic', 'Compile with -pedantic if using gcc', 'no'),    ('omp_flags', 'OpenMP compiler flags', 'default'),
76    BoolVariable('usewarnings','Compile with warnings as errors if using gcc','yes'),    ('omp_ldflags', 'OpenMP linker flags', 'default'),
77    ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),  # Mandatory libraries
78    ('forcecollres','for testing use only - set the default value for force resolving collective ops','leave_alone'),    ('boost_prefix', 'Prefix/Paths of boost installation', default_prefix),
79  # Python    ('boost_libs', 'Boost libraries to link with', ['boost_python-mt']),
80    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),  # Mandatory for tests
81    ('python_lib_path', 'Path to Python libs', usr_lib),    ('cppunit_prefix', 'Prefix/Paths of CppUnit installation', default_prefix),
82    ('python_libs', 'Python libraries to link with', [python_version]),    ('cppunit_libs', 'CppUnit libraries to link with', ['cppunit']),
83    ('python_cmd', 'Python command', 'python'),  # Optional libraries and options
84  # Boost    EnumVariable('mpi', 'Compile parallel version using MPI flavour', 'none', allowed_values=mpi_flavours),
85    ('boost_path', 'Path to Boost includes', '/usr/include'),    ('mpi_prefix', 'Prefix/Paths of MPI installation', default_prefix),
86    ('boost_lib_path', 'Path to Boost libs', usr_lib),    ('mpi_libs', 'MPI shared libraries to link with', ['mpi']),
87    ('boost_libs', 'Boost libraries to link with', ['boost_python']),    BoolVariable('netcdf', 'Enable netCDF file support', False),
88  # NetCDF    ('netcdf_prefix', 'Prefix/Paths of netCDF installation', default_prefix),
89    BoolVariable('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),    ('netcdf_libs', 'netCDF libraries to link with', ['netcdf_c++', 'netcdf']),
90    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),    BoolVariable('parmetis', 'Enable ParMETIS (requires MPI)', False),
91    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),    ('parmetis_prefix', 'Prefix/Paths of ParMETIS installation', default_prefix),
92    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),    ('parmetis_libs', 'ParMETIS libraries to link with', ['parmetis', 'metis']),
93  # MPI    BoolVariable('papi', 'Enable PAPI', False),
94    BoolVariable('useMPI', 'For backwards compatibility', 'no'),    ('papi_prefix', 'Prefix/Paths to PAPI installation', default_prefix),
   BoolVariable('usempi', 'Compile parallel version using MPI', 'no'),  
   ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),  
   ('mpi_path', 'Path to MPI includes', '/usr/include'),  
   ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),  
   ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),  
   ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', []),  
   ('mpi_flavour','Type of MPI execution environment','none'),  
 # ParMETIS  
   BoolVariable('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),  
   ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),  
   ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),  
   ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),  
 # PAPI  
   BoolVariable('usepapi', 'switch on/off the usage of PAPI', 'no'),  
   ('papi_path', 'Path to PAPI includes', '/usr/include'),  
   ('papi_lib_path', 'Path to PAPI libs', usr_lib),  
95    ('papi_libs', 'PAPI libraries to link with', ['papi']),    ('papi_libs', 'PAPI libraries to link with', ['papi']),
96    BoolVariable('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),    BoolVariable('papi_instrument_solver', 'Use PAPI to instrument each iteration of the solver', False),
97  # MKL    BoolVariable('mkl', 'Enable the Math Kernel Library', False),
98    BoolVariable('usemkl', 'switch on/off the usage of MKL', 'no'),    ('mkl_prefix', 'Prefix/Paths to MKL installation', default_prefix),
99    ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver','mkl_em64t','guide','pthread']),
100    ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),    BoolVariable('umfpack', 'Enable UMFPACK', False),
101    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),    ('umfpack_prefix', 'Prefix/Paths to UMFPACK installation', default_prefix),
102  # UMFPACK    ('umfpack_libs', 'UMFPACK libraries to link with', ['umfpack']),
103    BoolVariable('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),    BoolVariable('boomeramg', 'Enable BoomerAMG', False),
104    ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),    ('boomeramg_prefix', 'Prefix/Paths to BoomerAMG installation', default_prefix),
105    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('boomeramg_libs', 'BoomerAMG libraries to link with', ['boomeramg']),
106    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    EnumVariable('lapack', 'Set LAPACK flavour', 'none', allowed_values=lapack_flavours),
107    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('lapack_prefix', 'Prefix/Paths to LAPACK installation', default_prefix),
108  # Silo    ('lapack_libs', 'LAPACK libraries to link with', []),
109    BoolVariable('usesilo', 'switch on/off the usage of Silo', 'yes'),    BoolVariable('silo', 'Enable the Silo file format in weipa', False),
110    ('silo_path', 'Path to Silo includes', '/usr/include'),    ('silo_prefix', 'Prefix/Paths to Silo installation', default_prefix),
   ('silo_lib_path', 'Path to Silo libs', usr_lib),  
111    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
112  # AMD (used by UMFPACK)    BoolVariable('visit', 'Enable the VisIt simulation interface', False),
113    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    ('visit_prefix', 'Prefix/Paths to VisIt installation', default_prefix),
114    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('visit_libs', 'VisIt libraries to link with', ['simV2']),
115    ('amd_libs', 'AMD libraries to link with', ['amd']),    BoolVariable('vsl_random', 'Use VSL from intel for random data', False),
116  # BLAS (used by UMFPACK)  # Advanced settings
117    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),    #dudley_assemble_flags = -funroll-loops      to actually do something
118    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    ('dudley_assemble_flags', 'compiler flags for some dudley optimisations', ''),
119    ('blas_libs', 'BLAS libraries to link with', ['blas']),    # To enable passing function pointers through python
120  #Lapack options    BoolVariable('iknowwhatimdoing', 'Allow non-standard C', False),
121    BoolVariable('uselapack','switch on/off use of Lapack','no'),    # An option for specifying the compiler tools (see windows branch)
122    ('lapack_path', 'Path to Lapack includes','/usr/include'),    ('tools_names', 'Compiler tools to use', ['default']),
123    ('lapack_lib_path', 'Path to Lapack libs', usr_lib),    ('env_export', 'Environment variables to be passed to tools',[]),
124    ('lapack_libs', 'Lapack libraries to link with', []),    EnumVariable('forcelazy', 'For testing use only - set the default value for autolazy', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
125    ('lapack_type', '{clapack,mkl}','clapack'),    EnumVariable('forcecollres', 'For testing use only - set the default value for force resolving collective ops', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
126  # An option for specifying the compiler tools set (see windows branch).    # finer control over library building, intel aggressive global optimisation
127    ('tools_names', 'allow control over the tools in the env setup', ['intelc']),    # works with dynamic libraries on windows.
128  # finer control over library building, intel aggressive global optimisation    ('build_shared', 'Build dynamic libraries only', False),
129  # works with dynamic libraries on windows.    ('sys_libs', 'Extra libraries to link with', []),
130    ('share_esysUtils', 'control static or dynamic esysUtils lib', False),    ('escript_opts_version', 'Version of options file (do not specify on command line)'),
131    ('share_paso', 'control static or dynamic paso lib', False),    ('SVN_VERSION', 'Do not use from options file', -2),
132    ('env_export','Environment variables to be passed to children',[]),    ('pythoncmd', 'which python to compile with','python'),
133  #To enable passing function pointers through python    ('usepython3', 'Is this a python3 build? (experimental)', False),
134    BoolVariable('iknowwhatimdoing','allow nonstandard C',False)    ('pythonlibname', 'Name of the python library to link. (This is found automatically for python2.X.)', ''),
135      ('pythonlibpath', 'Path to the python library. (You should not need to set this unless your python has moved)',''),
136      ('pythonincpath','Path to python include files. (You should not need to set this unless your python has moved',''),
137      BoolVariable('BADPYTHONMACROS','Extra \#include to get around a python bug.', True),
138  )  )
139    
140    ##################### Create environment and help text #######################
141    
142    # Intel's compiler uses regular expressions improperly and emits a warning
143    # about failing to find the compilers. This warning can be safely ignored.
144    
145  ############ Specify which compilers to use ####################  # PATH is needed so the compiler, linker and tools are found if they are not
146    # in default locations.
147  # intelc uses regular expressions improperly and emits a warning about  env = Environment(tools = ['default'], options = vars,
148  # failing to find the compilers.  This warning can be safely ignored.                    ENV = {'PATH': os.environ['PATH']})
149    
150  if IS_WINDOWS_PLATFORM:  # set the vars for clang
151        env = Environment(options = opts)  def mkclang(env):
152        env = Environment(tools = ['default'] + env['tools_names'],      env['CXX']='clang++'
153                          options = opts)  
154  else:  if env['tools_names'] != 'default':
155     if effective_hostname == 'savanna':      zz=env['tools_names']
156        env = Environment(tools = ['default', 'intelc'], options = opts)      if 'clang' in zz:
157     elif os.uname()[4]=='ia64':          zz.remove('clang')
158        env = Environment(tools = ['default', 'intelc'], options = opts)          zz.insert(0, mkclang)
159        if env['CXX'] == 'icpc':      env = Environment(tools = ['default'] + env['tools_names'], options = vars,
160           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)                        ENV = {'PATH' : os.environ['PATH']})
161     else:  
162        env = Environment(tools = ['default'], options = opts)  if options_file:
163        opts_valid=False
164  # Override compiler choice if provided      if 'escript_opts_version' in env.Dictionary() and \
165  if env['cc'] != 'DEFAULT': env['CC']=env['cc']          int(env['escript_opts_version']) >= REQUIRED_OPTS_VERSION:
166  if env['cxx'] != 'DEFAULT': env['CXX']=env['cxx']              opts_valid=True
167        if opts_valid:
168  Help(opts.GenerateHelpText(env))          print("Using options in %s." % options_file)
169        else:
170  ############ Make sure target directories exist ################          print("\nOptions file %s" % options_file)
171            print("is outdated! Please update the file by examining one of the TEMPLATE")
172            print("files in the scons/ subdirectory and setting escript_opts_version to %d.\n"%REQUIRED_OPTS_VERSION)
173            Exit(1)
174    
175    # Generate help text (scons -h)
176    Help(vars.GenerateHelpText(env))
177    
178    # Check for superfluous options
179    if len(vars.UnknownVariables())>0:
180        for k in vars.UnknownVariables():
181            print("Unknown option '%s'" % k)
182        Exit(1)
183    
184    # create dictionary which will be populated with info for buildvars file
185    env['buildvars']={}
186    # create list which will be populated with warnings if there are any
187    env['warnings']=[]
188    
189    #################### Make sure install directories exist #####################
190    
191    env['BUILD_DIR']=Dir(env['build_dir']).abspath
192    prefix=Dir(env['prefix']).abspath
193    env['buildvars']['prefix']=prefix
194    env['incinstall'] = os.path.join(prefix, 'include')
195    env['bininstall'] = os.path.join(prefix, 'bin')
196    env['libinstall'] = os.path.join(prefix, 'lib')
197    env['pyinstall']  = os.path.join(prefix, 'esys')
198  if not os.path.isdir(env['bininstall']):  if not os.path.isdir(env['bininstall']):
199      os.makedirs(env['bininstall'])      os.makedirs(env['bininstall'])
200  if not os.path.isdir(env['libinstall']):  if not os.path.isdir(env['libinstall']):
# Line 217  if not os.path.isdir(env['libinstall']): Line 202  if not os.path.isdir(env['libinstall']):
202  if not os.path.isdir(env['pyinstall']):  if not os.path.isdir(env['pyinstall']):
203      os.makedirs(env['pyinstall'])      os.makedirs(env['pyinstall'])
204    
205  ########## Copy required environment vars ######################  env.Append(CPPPATH = [env['incinstall']])
206    env.Append(LIBPATH = [env['libinstall']])
 for i in env['env_export']:  
    env.Append(ENV = {i:os.environ[i]})  
   
 ############ Fill in compiler options if not set above #########  
   
 # Backwards compatibility: allow dodebug=yes and useMPI=yes  
 if env['dodebug']: env['usedebug'] = 1  
 if env['useMPI']: env['usempi'] = 1  
   
 # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  
 # For both C and C++ you get: cc_flags and either the optim flags or debug flags  
   
 sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.  
   
 cc_flags = ""  
 cc_optim = ""  
 cc_debug = ""  
 omp_optim = ""  
 omp_debug = ""  
 omp_libs = []  
   
 if env["CC"] == "icc":  
   # Intel compilers  
   cc_flags      = "-std=c99 -fPIC -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"  
   cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"  
   cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  
   omp_optim     = "-openmp -openmp_report0"  
   omp_debug     = "-openmp -openmp_report0"  
   omp_libs      = ['guide', 'pthread']  
   pedantic      = ""  
   fatalwarning      = ""        # Switch to turn warnings into errors  
   sysheaderopt      = ""  
 elif env["CC"][:3] == "gcc":  
   # GNU C on any system  
   cc_flags      = "-pedantic -Wall -fPIC -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"  
 #the long long warning occurs on the Mac  
   cc_optim      = "-O3"  
   cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  
   omp_optim     = "-fopenmp"  
   omp_debug     = "-fopenmp"  
   omp_libs      = []  
   pedantic      = "-pedantic-errors -Wno-long-long"  
   fatalwarning      = "-Werror"  
   sysheaderopt      = "-isystem "  
 elif env["CC"] == "cl":  
   # Microsoft Visual C on Windows  
   cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"  
   cc_optim      = "/O2 /Op /MT /W3"  
   cc_debug      = "/Od /RTC1 /MTd /ZI -DBOUNDS_CHECK"  
   omp_optim     = ""  
   omp_debug     = ""  
   omp_libs      = []  
   pedantic      = ""  
   fatalwarning      = ""  
   sysheaderopt      = ""  
 elif env["CC"] == "icl":  
   # intel C on Windows, see windows_intelc_options.py for a start  
   pedantic      = ""  
   fatalwarning      = ""  
   sysheaderopt      = ""  
   
   
 # If not specified in hostname_options.py then set them here  
 if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  
 if env["cc_optim"]  == "-DEFAULT_2": env['cc_optim'] = cc_optim  
 if env["cc_debug"]  == "-DEFAULT_3": env['cc_debug'] = cc_debug  
 if env["omp_optim"] == "-DEFAULT_4": env['omp_optim'] = omp_optim  
 if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  
 if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  
   
 #set up the autolazy values  
 if env['forcelazy']    != "leave_alone":  
   if env['forcelazy'] == 'on':  
     env.Append(CPPDEFINES=['FAUTOLAZYON'])  
   else:  
      if env['forcelazy'] == 'off':  
     env.Append(CPPDEFINES=['FAUTOLAZYOFF'])  
   
 #set up the colective resolve values  
 if env['forcecollres']    != "leave_alone":  
   print env['forcecollres']  
   if env['forcecollres'] == 'on':  
     env.Append(CPPDEFINES=['FRESCOLLECTON'])  
   else:  
      if env['forcecollres'] == 'off':  
     env.Append(CPPDEFINES=['FRESCOLLECTOFF'])  
   
   
 if env['iknowwhatimdoing']:  
     env.Append(CPPDEFINES=['IKNOWWHATIMDOING'])  
   
 # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  
 if not env["useopenmp"]:  
   env['omp_optim'] = ""  
   env['omp_debug'] = ""  
   env['omp_libs'] = []  
   
 if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0  
   
 # Windows doesn't use LD_LIBRARY_PATH but PATH instead  
 if IS_WINDOWS_PLATFORM:  
     LD_LIBRARY_PATH_KEY='PATH'  
     env['ENV']['LD_LIBRARY_PATH']=''  
 else:  
     LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'  
 ############ Copy environment variables into scons env #########  
   
 try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']  
 except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1  
   
 try: env['ENV']['ESCRIPT_NUM_THREADS'] = os.environ['ESCRIPT_NUM_THREADS']  
 except KeyError: pass  
   
 try: env['ENV']['ESCRIPT_NUM_PROCS'] = os.environ['ESCRIPT_NUM_PROCS']  
 except KeyError: env['ENV']['ESCRIPT_NUM_PROCS']=1  
   
 try: env['ENV']['ESCRIPT_NUM_NODES'] = os.environ['ESCRIPT_NUM_NODES']  
 except KeyError: env['ENV']['ESCRIPT_NUM_NODES']=1  
207    
208  try: env['ENV']['ESCRIPT_HOSTFILE'] = os.environ['ESCRIPT_HOSTFILE']  ################# Fill in compiler options if not set above ##################
 except KeyError: pass  
209    
210  try: env['ENV']['PATH'] = os.environ['PATH']  if env['cxx'] != 'default': env['CXX']=env['cxx']
 except KeyError: pass  
211    
212  try: env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']  # version >=9 of intel C++ compiler requires use of icpc to link in C++
213  except KeyError: pass  # runtimes (icc does not)
214    if not IS_WINDOWS and os.uname()[4]=='ia64' and env['CXX']=='icpc':
215  try: env['ENV']['C_INCLUDE_PATH'] = os.environ['C_INCLUDE_PATH']      env['LINK'] = env['CXX']
216  except KeyError: pass  
217    # default compiler/linker options
218  try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']  cc_flags = ''
219  except KeyError: pass  cc_optim = ''
220    cc_debug = ''
221  try: env.PrependENVPath(LD_LIBRARY_PATH_KEY,os.environ['LD_LIBRARY_PATH'])  omp_flags = ''
222  except KeyError: pass  omp_ldflags = ''
223    fatalwarning = '' # switch to turn warnings into errors
224  try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']  sysheaderopt = '' # how to indicate that a header is a system header
225  except KeyError: pass  
226    # env['CC'] might be a full path
227  try: env['ENV']['DISPLAY'] = os.environ['DISPLAY']  cc_name=os.path.basename(env['CXX'])
228  except KeyError: pass  
229    if cc_name == 'icpc':
230  try: env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']      # Intel compiler
231  except KeyError: pass      # #1875: offsetof applied to non-POD types is nonstandard (in boost)
232        # removed -std=c99 because icpc doesn't like it and we aren't using c anymore
233  try: env['ENV']['HOME'] = os.environ['HOME']      cc_flags    = "-fPIC -w2 -wd1875 -Wno-unknown-pragmas -DBLOCKTIMER -DCORE_ID1"
234  except KeyError: pass      cc_optim    = "-O3 -ftz -fno-alias -ipo -xHost"
235        cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
236  # Configure for test suite      omp_flags   = "-openmp"
237        omp_ldflags = "-openmp -openmp_report=1"
238        fatalwarning = "-Werror"
239  env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  elif cc_name[:3] == 'g++':
240  env.PrependENVPath('PYTHONPATH', prefix)      # GNU C on any system
241  env['ENV']['ESCRIPT_ROOT'] = prefix      # note that -ffast-math is not used because it breaks isnan(),
242        # see mantis #691
243  ############ Set up paths for Configure() ######################      cc_flags     = "-pedantic -Wall -fPIC -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"
244        cc_optim     = "-O3"
245  # Make a copy of an environment      cc_debug     = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
246  # Use env.Clone if available, but fall back on env.Copy for older version of scons      omp_flags    = "-fopenmp"
247  def clone_env(env):      omp_ldflags  = "-fopenmp"
248    if 'Clone' in dir(env): return env.Clone()    # scons-0.98      fatalwarning = "-Werror"
249    else:                   return env.Copy() # scons-0.96      sysheaderopt = "-isystem"
250    elif cc_name == 'cl':
251  # Add cc option -I<Escript>/trunk/include      # Microsoft Visual C on Windows
252  env.Append(CPPPATH      = [Dir('include')])      cc_flags     = "/EHsc /MD /GR /wd4068 /D_USE_MATH_DEFINES /DDLL_NETCDF"
253        cc_optim     = "/O2 /Op /W3"
254  # Add cc option -L<Escript>/trunk/lib      cc_debug     = "/Od /RTCcsu /ZI /DBOUNDS_CHECK"
255  env.Append(LIBPATH      = [Dir(env['libinstall'])])      fatalwarning = "/WX"
256    elif cc_name == 'icl':
257  if env['cc_extra'] != '': env.Append(CFLAGS = env['cc_extra'])      # Intel C on Windows
258        cc_flags     = '/EHsc /GR /MD'
259        cc_optim     = '/fast /Oi /W3 /Qssp /Qinline-factor- /Qinline-min-size=0 /Qunroll'
260        cc_debug     = '/Od /RTCcsu /Zi /Y- /debug:all /Qtrapuv'
261        omp_flags    = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
262        omp_ldflags  = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
263    
264    env['sysheaderopt']=sysheaderopt
265    
266    # set defaults if not otherwise specified
267    if env['cc_flags']    == 'default': env['cc_flags'] = cc_flags
268    if env['cc_optim']    == 'default': env['cc_optim'] = cc_optim
269    if env['cc_debug']    == 'default': env['cc_debug'] = cc_debug
270    if env['omp_flags']   == 'default': env['omp_flags'] = omp_flags
271    if env['omp_ldflags'] == 'default': env['omp_ldflags'] = omp_ldflags
272  if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])  if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
273  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])  if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])
   
 if env['usepedantic']: env.Append(CCFLAGS = pedantic)  
   
 # MS Windows  
 if IS_WINDOWS_PLATFORM:  
   env.AppendENVPath('PATH', [env['boost_lib_path']])  
   env.AppendENVPath('PATH', [env['libinstall']])  
   if not env['share_esysUtils'] :  
     env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])  
   if not env['share_paso'] :  
     env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])  
274    
275    if env['usenetcdf']:  if env['BADPYTHONMACROS']: env.Append(CXXFLAGS = ' -DBADPYTHONMACROS')
     env.AppendENVPath('PATH',   [env['netCDF_lib_path']])  
276    
277  env.Append(ARFLAGS = env['ar_flags'])  if env['usepython3']:
278        env.Append(CPPDEFINES=['ESPYTHON3'])
279    
280  # Get the global Subversion revision number for getVersion() method  # set up the autolazy values
281  try:  if env['forcelazy'] == 'on':
282     global_revision = os.popen("svnversion -n .").read()      env.Append(CPPDEFINES=['FAUTOLAZYON'])
283     global_revision = re.sub(":.*", "", global_revision)  elif env['forcelazy'] == 'off':
284     global_revision = re.sub("[^0-9]", "", global_revision)      env.Append(CPPDEFINES=['FAUTOLAZYOFF'])
285  except:  
286     global_revision="-1"  # set up the collective resolve values
287  if global_revision == "": global_revision="-2"  if env['forcecollres'] == 'on':
288  env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])      env.Append(CPPDEFINES=['FRESCOLLECTON'])
289    elif env['forcecollres'] == 'off':
290  ############ numpy (required) ###############################      env.Append(CPPDEFINES=['FRESCOLLECTOFF'])
   
 try:  
   from numpy import identity  
 except ImportError:  
   print "Cannot import numpy, you need to set your PYTHONPATH"  
   sys.exit(1)  
291    
292  ############ C compiler (required) #############################  # allow non-standard C if requested
293    if env['iknowwhatimdoing']:
294  # Create a Configure() environment for checking existence of required libraries and headers      env.Append(CPPDEFINES=['IKNOWWHATIMDOING'])
 conf = Configure(clone_env(env))  
   
 # Test that the compiler is working  
 if not conf.CheckFunc('printf'):  
    print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])  
    sys.exit(1)  
   
 if conf.CheckFunc('gethostname'):  
   conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])  
   
 ############ python libraries (required) #######################  
295    
296    # Disable OpenMP if no flags provided
297    if env['openmp'] and env['omp_flags'] == '':
298       env['warnings'].append("OpenMP requested but no flags provided - disabling OpenMP!")
299       env['openmp'] = False
300    
301  if not sysheaderopt =="":  if env['openmp']:
302    conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])      env.Append(CCFLAGS = env['omp_flags'])
303        if env['omp_ldflags'] != '': env.Append(LINKFLAGS = env['omp_ldflags'])
304  else:  else:
305    conf.env.AppendUnique(CPPPATH     = [env['python_path']])      env['omp_flags']=''
306        env['omp_ldflags']=''
307    
308  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  env['buildvars']['openmp']=int(env['openmp'])
 conf.env.AppendUnique(LIBS      = [env['python_libs']])  
309    
310  conf.env.PrependENVPath('PYTHONPATH', prefix)  # add debug/non-debug compiler flags
311  conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['python_lib_path'])    # The wrapper script needs to find these libs  env['buildvars']['debug']=int(env['debug'])
312  conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  if env['debug']:
313        env.Append(CCFLAGS = env['cc_debug'])
 if not conf.CheckCHeader('Python.h'):  
   print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])  
   sys.exit(1)  
 if not conf.CheckFunc('Py_Exit'):  
   print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])  
   sys.exit(1)  
   
 ############ boost (required) ##################################  
   
 if not sysheaderopt =="":  
 # This is required because we can't -isystem /usr/system because it breaks std includes  
   if os.path.normpath(env['boost_path']) =="/usr/include":  
     conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))  
   else:  
     conf.env.Append(CCFLAGS=sysheaderopt+env['boost_path'])  
314  else:  else:
315    conf.env.AppendUnique(CPPPATH     = [env['boost_path']])      env.Append(CCFLAGS = env['cc_optim'])
   
 conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  
 conf.env.AppendUnique(LIBS      = [env['boost_libs']])  
   
 conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['boost_lib_path']) # The wrapper script needs to find these libs  
 #ensure that our path entries remain at the front  
 conf.env.PrependENVPath('PYTHONPATH', prefix)  
 conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
316    
317    # always add cc_flags
318    env.Append(CCFLAGS = env['cc_flags'])
319    
320  #Yep we still cant figure this one out. - working on it.  # add system libraries
321  if not IS_WINDOWS_PLATFORM:  env.AppendUnique(LIBS = env['sys_libs'])
   if not conf.CheckCXXHeader('boost/python.hpp'):  
     print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])  
     sys.exit(1)  
322    
323    if not conf.CheckFunc('PyObject_SetAttr'):  # determine svn revision
324      print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])  global_revision=ARGUMENTS.get('SVN_VERSION', None)
325      sys.exit(1)  if global_revision:
326        global_revision = re.sub(':.*', '', global_revision)
327        global_revision = re.sub('[^0-9]', '', global_revision)
328  # Commit changes to environment      if global_revision == '': global_revision='-2'
 env = conf.Finish()  
   
 ############ VTK (optional) ####################################  
   
 if env['usevtk']:  
   try:  
     import vtk  
     env['usevtk'] = 1  
   except ImportError:  
     env['usevtk'] = 0  
   
 # Add VTK to environment env if it was found  
 if env['usevtk']:  
   env.Append(CPPDEFINES = ['USE_VTK'])  
   
 ############ NetCDF (optional) #################################  
   
 conf = Configure(clone_env(env))  
   
 if env['usenetcdf']:  
   conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])  
   conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['netCDF_lib_path'])  # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
   
 if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  
 if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  
   
 # Add NetCDF to environment env if it was found  
 if env['usenetcdf']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['USE_NETCDF'])  
329  else:  else:
330    conf.Finish()    # Get the global Subversion revision number for the getVersion() method
331      try:
332        global_revision = os.popen('svnversion -n .').read()
333        global_revision = re.sub(':.*', '', global_revision)
334        global_revision = re.sub('[^0-9]', '', global_revision)
335        if global_revision == '': global_revision='-2'
336      except:
337        global_revision = '-1'
338    env['svn_revision']=global_revision
339    env['buildvars']['svn_revision']=global_revision
340    env.Append(CPPDEFINES=['SVN_VERSION='+global_revision])
341    
342    if IS_WINDOWS:
343        if not env['build_shared']:
344            env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
345            env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
346    
347    # VSL random numbers
348    env['buildvars']['vsl_random']=int(env['vsl_random'])
349    if env['vsl_random']:
350        env.Append(CPPDEFINES = ['MKLRANDOM'])
351    
352  ############ PAPI (optional) ###################################  env['IS_WINDOWS']=IS_WINDOWS
353    
354  # Start a new configure environment that reflects what we've already found  ###################### Copy required environment vars ########################
 conf = Configure(clone_env(env))  
355    
356  if env['usepapi']:  # Windows doesn't use LD_LIBRARY_PATH but PATH instead
357    conf.env.AppendUnique(CPPPATH = [env['papi_path']])  if IS_WINDOWS:
358    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])      LD_LIBRARY_PATH_KEY='PATH'
359    conf.env.AppendUnique(LIBS    = [env['papi_libs']])      env['ENV']['LD_LIBRARY_PATH']=''
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['papi_lib_path'])    # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
   
 if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  
 if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  
   
 # Add PAPI to environment env if it was found  
 if env['usepapi']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['BLOCKPAPI'])  
360  else:  else:
361    conf.Finish()      LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'
   
 ############ MKL (optional) ####################################  
362    
363  # Start a new configure environment that reflects what we've already found  env['LD_LIBRARY_PATH_KEY']=LD_LIBRARY_PATH_KEY
 conf = Configure(clone_env(env))  
364    
365  if env['usemkl']:  # the following env variables are exported for the unit tests
   conf.env.AppendUnique(CPPPATH = [env['mkl_path']])  
   conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['mkl_libs']])  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['mkl_lib_path']) # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
   
 if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  
 if env['usemkl'] and not conf.CheckFunc('pardiso'): env['usemkl'] = 0  
   
   
 # Add MKL to environment env if it was found  
 if env['usemkl']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['MKL'])  
 else:  
   conf.Finish()  
366    
367  ############ UMFPACK (optional) ################################  for key in 'OMP_NUM_THREADS', 'ESCRIPT_NUM_PROCS', 'ESCRIPT_NUM_NODES':
368        try:
369            env['ENV'][key] = os.environ[key]
370        except KeyError:
371            env['ENV'][key] = 1
372    
373    env_export=env['env_export']
374    env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME','KMP_MONITOR_STACKSIZE','TMPDIR','TEMP','TMP'])
375    
376    for key in set(env_export):
377        try:
378            env['ENV'][key] = os.environ[key]
379        except KeyError:
380            pass
381    
382  # Start a new configure environment that reflects what we've already found  try:
383  conf = Configure(clone_env(env))      env.PrependENVPath(LD_LIBRARY_PATH_KEY, os.environ[LD_LIBRARY_PATH_KEY])
384    except KeyError:
385        pass
386    
387  if env['useumfpack']:  if IS_OSX:
388    conf.env.AppendUnique(CPPPATH = [env['ufc_path']])    try:
389    conf.env.AppendUnique(CPPPATH = [env['umf_path']])      env.PrependENVPath('DYLD_LIBRARY_PATH', os.environ['DYLD_LIBRARY_PATH'])
390    conf.env.AppendUnique(LIBPATH = [env['umf_lib_path']])    except KeyError:
391    conf.env.AppendUnique(LIBS    = [env['umf_libs']])      pass
   conf.env.AppendUnique(CPPPATH = [env['amd_path']])  
   conf.env.AppendUnique(LIBPATH = [env['amd_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['amd_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['blas_path']])  
   conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['blas_libs']])  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['umf_lib_path']) # The wrapper script needs to find these libs  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['amd_lib_path']) # The wrapper script needs to find these libs  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['blas_lib_path'])    # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
   
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
 if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  
 # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?  
   
 # Add UMFPACK to environment env if it was found  
 if env['useumfpack']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['UMFPACK'])  
 else:  
   conf.Finish()  
392    
 ############ Silo (optional) ###################################  
393    
394  if env['usesilo']:  # these shouldn't be needed
395    conf = Configure(clone_env(env))  #for key in 'C_INCLUDE_PATH','CPLUS_INCLUDE_PATH','LIBRARY_PATH':
396    conf.env.AppendUnique(CPPPATH = [env['silo_path']])  #    try:
397    conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])  #        env['ENV'][key] = os.environ[key]
398    conf.env.AppendUnique(LIBS = [env['silo_libs']])  #    except KeyError:
399    if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0  #        pass
   if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0  
   conf.Finish()  
   
 # Add the path to Silo to environment env if it was found.  
 # Note that we do not add the libs since they are only needed for the  
 # escriptexport library and tools.  
 if env['usesilo']:  
   env.AppendUnique(CPPPATH = [env['silo_path']])  
   env.AppendUnique(LIBPATH = [env['silo_lib_path']])  
   
 ########### Lapack (optional) ##################################  
   
 if env['uselapack']:  
     env.AppendUnique(CPPDEFINES='USE_LAPACK')  
     env.AppendUnique(CPPPATH = [env['lapack_path']])  
     env.AppendUnique(LIBPATH =[env['lapack_lib_path']])  
   
     env.Append(LIBPATH = '/usr/lib/atlas')  
     env.Append(LIBS = [env['lapack_libs']])  
     if env['lapack_type']=='mkl':  
        if not env['usemkl']:  
         env['uselapack']=0  
         print "mkl_lapack requires mkl"  
        else:  
         env.AppendUnique(CPPDEFINES='MKL_LAPACK')  
         
   
 ############ Add the compiler flags ############################  
   
 # Enable debug by choosing either cc_debug or cc_optim  
 if env['usedebug']:  
   env.Append(CCFLAGS        = env['cc_debug'])  
   env.Append(CCFLAGS        = env['omp_debug'])  
 else:  
   env.Append(CCFLAGS        = env['cc_optim'])  
   env.Append(CCFLAGS        = env['omp_optim'])  
400    
401  # Always use cc_flags  try:
402  env.Append(CCFLAGS      = env['cc_flags'])      env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
403  env.Append(LIBS         = [env['omp_libs']])  except KeyError:
404        pass
405    
406  ############ Add some custom builders ##########################  ######################## Add some custom builders ############################
407    
408  py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  if env['pythoncmd']=='python':
409        py_builder = Builder(action = build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
410    else:
411        py_builder = Builder(action = env['pythoncmd']+" scripts/py_comp.py $SOURCE $TARGET", suffix = '.pyc', src_suffix = '.py', single_source=True)
412  env.Append(BUILDERS = {'PyCompile' : py_builder});  env.Append(BUILDERS = {'PyCompile' : py_builder});
413    
414  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  runUnitTest_builder = Builder(action = runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
415  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
416    
417  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  runPyUnitTest_builder = Builder(action = runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
418  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
419    
420  epstopdfbuilder = Builder(action = scons_extensions.eps2pdf, suffix=".pdf", src_suffix=".eps", single_source=True)  epstopdfbuilder = Builder(action = eps2pdf, suffix='.pdf', src_suffix='.eps', single_source=True)
421  env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});  env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
422    
423  ############ MPI (optional) ####################################  ############################ Dependency checks ###############################
 if not env['usempi']: env['mpi_flavour']='none'  
   
 # Create a modified environment for MPI programs (identical to env if usempi=no)  
 env_mpi = clone_env(env)  
424    
425  # Start a new configure environment that reflects what we've already found  ######## Compiler
426  conf = Configure(clone_env(env_mpi))  env=checkCompiler(env)
427    
428  if env_mpi['usempi']:  ######## Python headers & library (required)
429    VALID_MPIs=[ "MPT", "MPICH", "MPICH2", "OPENMPI", "INTELMPI" ]  env=checkPython(env)
   if not env_mpi['mpi_flavour'] in VALID_MPIs:  
       raise ValueError,"MPI is enabled but mpi_flavour = %s is not a valid key from %s."%( env_mpi['mpi_flavour'],VALID_MPIs)  
   conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])  
   conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['mpi_lib_path']) # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
   
 if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  
 # if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  
   
 # Add MPI to environment env_mpi if it was found  
 if env_mpi['usempi']:  
   env_mpi = conf.Finish()  
   env_mpi.Append(CPPDEFINES = ['PASO_MPI', 'MPI_NO_CPPBIND', env_mpi['MPICH_IGNORE_CXX_SEEK']])  
 else:  
   conf.Finish()  
430    
431  env['usempi'] = env_mpi['usempi']  ######## boost & boost-python (required)
432    env=checkBoost(env)
433    
434  ############ ParMETIS (optional) ###############################  ######## numpy (required) and numpy headers (optional)
435    env=checkNumpy(env)
436    
437  # Start a new configure environment that reflects what we've already found  ######## CppUnit (required for tests)
438  conf = Configure(clone_env(env_mpi))  env=checkCppUnit(env)
439    
440  if not env_mpi['usempi']: env_mpi['useparmetis'] = 0  ######## optional python modules (sympy, pyproj)
441    env=checkOptionalModules(env)
442    
443  if env_mpi['useparmetis']:  ######## optional dependencies (netCDF, PAPI, MKL, UMFPACK, Lapack, Silo, ...)
444    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])  env=checkOptionalLibraries(env)
   conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['parmetis_lib_path'])    # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
445    
446  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  ######## PDFLaTeX (for documentation)
447  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  env=checkPDFLatex(env)
448    
449  # Add ParMETIS to environment env_mpi if it was found  # keep some of our install paths first in the list for the unit tests
450  if env_mpi['useparmetis']:  env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
451    env_mpi = conf.Finish()  env.PrependENVPath('PYTHONPATH', prefix)
452    env_mpi.Append(CPPDEFINES = ['USE_PARMETIS'])  env['ENV']['ESCRIPT_ROOT'] = prefix
 else:  
   conf.Finish()  
   
 env['useparmetis'] = env_mpi['useparmetis']  
   
 ############ Summarize our environment #########################  
   
 print ""  
 print "Summary of configuration (see ./config.log for information)"  
 print " Using python libraries"  
 print " Using numpy"  
 print " Using boost"  
 if env['usenetcdf']: print "    Using NetCDF"  
 else: print "   Not using NetCDF"  
 if env['usevtk']: print "   Using VTK"  
 else: print "   Not using VTK"  
 if env['usemkl']: print "   Using MKL"  
 else: print "   Not using MKL"  
 if env['useumfpack']: print "   Using UMFPACK"  
 else: print "   Not using UMFPACK"  
 if env['usesilo']: print "  Using Silo"  
 else: print "   Not using Silo"  
 if env['useopenmp']: print "    Using OpenMP"  
 else: print "   Not using OpenMP"  
 if env['usempi']: print "   Using MPI (flavour = %s)"%env['mpi_flavour']  
 else: print "   Not using MPI"  
 if env['useparmetis']: print "  Using ParMETIS"  
 else: print "   Not using ParMETIS (requires MPI)"  
 if env['usepapi']: print "  Using PAPI"  
 else: print "   Not using PAPI"  
 if env['uselapack']: print "    Using Lapack"  
 else: print "   Not using Lapack"  
 if env['usedebug']: print " Compiling for debug"  
 else: print "   Not compiling for debug"  
 print " Installing in", prefix  
 if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"  
 else: print "   Not treating warnings as errors"  
 print ""  
   
 ############ Delete option-dependent files #####################  
   
 Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.debug")))  
 Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.mpi")))  
 Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.openmp")))  
 Execute(Delete(os.path.join(env['libinstall'],"pyversion")))  
 Execute(Delete(os.path.join(env['libinstall'],"buildvars")))  
 if not env['usempi']: Execute(Delete(os.path.join(env['libinstall'],"pythonMPI")))  
   
   
 ############ Build the subdirectories ##########################  
   
 if env['usepedantic']: env_mpi.Append(CCFLAGS = pedantic)  
453    
454    if not env['verbose']:
455        env['CXXCOMSTR'] = "Compiling $TARGET"
456        env['SHCXXCOMSTR'] = "Compiling $TARGET"
457        env['ARCOMSTR'] = "Linking $TARGET"
458        env['LINKCOMSTR'] = "Linking $TARGET"
459        env['SHLINKCOMSTR'] = "Linking $TARGET"
460        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
461        env['BIBTEXCOMSTR'] = "Generating bibliography $TARGET"
462        env['MAKEINDEXCOMSTR'] = "Generating index $TARGET"
463        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
464        #Progress(['Checking -\r', 'Checking \\\r', 'Checking |\r', 'Checking /\r'], interval=17)
465    
466    ####################### Configure the subdirectories #########################
467    
468    # remove obsolete files
469    if not env['usempi']:
470        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPI')))
471        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPIredirect')))
472    
473  from grouptest import *  from grouptest import *
   
474  TestGroups=[]  TestGroups=[]
475    
476  dodgy_env=clone_env(env_mpi)    # Environment without pedantic options  # keep an environment without warnings-as-errors
477    dodgy_env=env.Clone()
 ############ Now we switch on Warnings as errors ###############  
   
 #this needs to be done after configuration because the scons test files have warnings in them  
   
 if ((fatalwarning != "") and (env['usewarnings'])):  
   env.Append(CCFLAGS        = fatalwarning)  
   env_mpi.Append(CCFLAGS        = fatalwarning)  
478    
479    # now add warnings-as-errors flags. This needs to be done after configuration
480    # because the scons test files have warnings in them
481    if ((fatalwarning != '') and (env['werror'])):
482        env.Append(CCFLAGS = fatalwarning)
483    
484  Export(  Export(
485    ["env",    ['env',
486     "env_mpi",     'dodgy_env',
487     "clone_env",     'IS_WINDOWS',
488     "dodgy_env",     'TestGroups'
489     "IS_WINDOWS_PLATFORM",    ]
490     "TestGroups"  )
    ]  
   )  
   
 env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  
 env.SConscript(dirs = ['tools/escriptconvert'], build_dir='build/$PLATFORM/tools/escriptconvert', duplicate=0)  
 env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  
 env.SConscript(dirs = ['dataexporter/src'], build_dir='build/$PLATFORM/dataexporter', duplicate=0)  
 env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  
 env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  
 env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  
 env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)  
 env.SConscript(dirs = ['doc'], build_dir='build/$PLATFORM/doc', duplicate=0)  
 env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  
 env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  
 env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  
 env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)  
 env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)  
   
   
 ############ Remember what optimizations we used ###############  
   
 remember_list = []  
   
 if env['usedebug']:  
   remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.debug"), None, Touch('$TARGET'))  
   
 if env['usempi']:  
   remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.mpi"), None, Touch('$TARGET'))  
   
 if env['useopenmp']:  
   remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.openmp"), None, Touch('$TARGET'))  
   
 env.Alias('remember_options', remember_list)  
   
491    
492  ############### Record python interpreter version ##############  env.SConscript(dirs = ['tools/escriptconvert'], variant_dir='$BUILD_DIR/$PLATFORM/tools/escriptconvert', duplicate=0)
493    env.SConscript(dirs = ['paso/src'], variant_dir='$BUILD_DIR/$PLATFORM/paso', duplicate=0)
494    env.SConscript(dirs = ['weipa/src'], variant_dir='$BUILD_DIR/$PLATFORM/weipa', duplicate=0)
495    env.SConscript(dirs = ['escript/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/escript', duplicate=0)
496    
497    #This will pull in the escriptcore/py_src and escriptcore/test
498    env.SConscript(dirs = ['escriptcore/src'], variant_dir='$BUILD_DIR/$PLATFORM/escriptcore', duplicate=0)
499    #env.SConscript(dirs = ['escript/test'], variant_dir='$BUILD_DIR/$PLATFORM/escript/test', duplicate=0)
500    env.SConscript(dirs = ['esysUtils/src'], variant_dir='$BUILD_DIR/$PLATFORM/esysUtils', duplicate=0)
501    env.SConscript(dirs = ['pasowrap/src'], variant_dir='$BUILD_DIR/$PLATFORM/pasowrap', duplicate=0)
502    env.SConscript(dirs = ['dudley/src'], variant_dir='$BUILD_DIR/$PLATFORM/dudley', duplicate=0)
503    env.SConscript(dirs = ['finley/src'], variant_dir='$BUILD_DIR/$PLATFORM/finley', duplicate=0)
504    env.SConscript(dirs = ['ripley/src'], variant_dir='$BUILD_DIR/$PLATFORM/ripley', duplicate=0)
505    env.SConscript(dirs = ['downunder/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/downunder', duplicate=0)
506    env.SConscript(dirs = ['modellib/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/modellib', duplicate=0)
507    env.SConscript(dirs = ['pycad/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pycad', duplicate=0)
508    env.SConscript(dirs = ['pythonMPI/src'], variant_dir='$BUILD_DIR/$PLATFORM/pythonMPI', duplicate=0)
509    env.SConscript(dirs = ['doc'], variant_dir='$BUILD_DIR/$PLATFORM/doc', duplicate=0)
510    env.SConscript(dirs = ['paso/profiling'], variant_dir='$BUILD_DIR/$PLATFORM/paso/profiling', duplicate=0)
511    
 if not IS_WINDOWS_PLATFORM:  
512    
513    versionstring="Python "+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])  ######################## Populate the buildvars file #########################
   if sys.version_info[4] >0 : versionstring+="rc%s"%sys.version_info[4]  
   os.system("echo "+versionstring+" > "+os.path.join(env['libinstall'],"pyversion"))  
514    
515  ############## Populate the buildvars file #####################  write_buildvars(env)
516    
517  buildvars=open(os.path.join(env['libinstall'],'buildvars'),'w')  ################### Targets to build and install libraries ###################
 buildvars.write('python='+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+'\n')  
518    
519  # Find the boost version by extracting it from version.hpp  target_init = env.Command(os.path.join(env['pyinstall'],'__init__.py'), None, Touch('$TARGET'))
520  boosthpp=open(os.path.join(env['boost_path'],'boost','version.hpp'))  env.Alias('target_init', [target_init])
521  boostversion='unknown'  # delete buildvars upon cleanup
522  try:  env.Clean('target_init', os.path.join(env['libinstall'], 'buildvars'))
     for line in boosthpp:  
         ver=re.match(r'#define BOOST_VERSION (\d+)',line)  
         if ver:  
             boostversion=ver.group(1)  
 except StopIteration:  
     pass  
 buildvars.write("boost="+boostversion+"\n")  
 buildvars.write("svn_revision="+str(global_revision)+"\n")  
 out="usedebug="  
 if env['usedebug']:  
     out+="y"  
 else:  
     out+="n"  
 out+="\nusempi="  
 if env['usempi']:  
     out+="y"  
 else:  
     out+="n"  
 out+="\nuseopenmp="  
 if env['useopenmp']:  
     out+="y"  
 else:  
     out+="n"  
 buildvars.write(out+"\n")  
 buildvars.write("mpi_flavour="+env['mpi_flavour']+'\n')  
 out="lapack="  
 if env['uselapack']:  
    out+="y"  
 else:  
    out+="n"  
 out+="\nsilo="  
 if env['usesilo']:  
    out+="y"  
 else:  
    out+="n"  
 buildvars.write(out+"\n")  
 buildvars.close()  
523    
524    # The headers have to be installed prior to build in order to satisfy
525    # #include <paso/Common.h>
526    env.Alias('build_esysUtils', ['install_esysUtils_headers', 'build_esysUtils_lib'])
527    env.Alias('install_esysUtils', ['build_esysUtils', 'install_esysUtils_lib'])
528    
529  ############ Targets to build and install libraries ############  env.Alias('build_paso', ['install_paso_headers', 'build_paso_lib'])
530    env.Alias('install_paso', ['build_paso', 'install_paso_lib'])
531    
532  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  env.Alias('build_escript', ['install_escript_headers', 'build_escript_lib', 'build_escriptcpp_lib'])
533  env.Alias('target_init', [target_init])  env.Alias('install_escript', ['build_escript', 'install_escript_lib', 'install_escriptcpp_lib', 'install_escriptcore_py', 'install_escript_py'])
534    
535  # The headers have to be installed prior to build in order to satisfy #include <paso/Common.h>  env.Alias('build_pasowrap', ['install_pasowrap_headers', 'build_pasowrap_lib', 'build_pasowrapcpp_lib'])
536  env.Alias('build_esysUtils', ['target_install_esysUtils_headers', 'target_esysUtils_a'])  env.Alias('install_pasowrap', ['build_pasowrap', 'install_pasowrap_lib', 'install_pasowrapcpp_lib', 'install_pasowrap_py'])
 env.Alias('install_esysUtils', ['build_esysUtils', 'target_install_esysUtils_a'])  
537    
538  env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])  env.Alias('build_dudley', ['install_dudley_headers', 'build_dudley_lib', 'build_dudleycpp_lib'])
539  env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])  env.Alias('install_dudley', ['build_dudley', 'install_dudley_lib', 'install_dudleycpp_lib', 'install_dudley_py'])
540    
541  env.Alias('build_dataexporter', ['target_install_escriptexport_headers', 'target_escriptexport_so', 'target_escriptexportcpp_so'])  env.Alias('build_finley', ['install_finley_headers', 'build_finley_lib', 'build_finleycpp_lib'])
542  env.Alias('install_dataexporter', ['build_dataexporter', 'target_install_escriptexport_so', 'target_install_escriptexportcpp_so', 'target_install_dataexporter_py'])  env.Alias('install_finley', ['build_finley', 'install_finley_lib', 'install_finleycpp_lib', 'install_finley_py'])
543    
544  env.Alias('build_escriptreader', ['target_install_escriptexport_headers', 'target_escriptreader_a'])  env.Alias('build_ripley', ['install_ripley_headers', 'build_ripley_lib', 'build_ripleycpp_lib'])
545  env.Alias('install_escriptreader', ['build_escriptreader', 'target_install_escriptreader_a'])  env.Alias('install_ripley', ['build_ripley', 'install_ripley_lib', 'install_ripleycpp_lib', 'install_ripley_py'])
546    
547  env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])  env.Alias('build_weipa', ['install_weipa_headers', 'build_weipa_lib', 'build_weipacpp_lib'])
548  env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])  env.Alias('install_weipa', ['build_weipa', 'install_weipa_lib', 'install_weipacpp_lib', 'install_weipa_py'])
549    
550  env.Alias('build_finley', ['target_install_finley_headers', 'target_finley_so', 'target_finleycpp_so'])  env.Alias('build_escriptreader', ['install_weipa_headers', 'build_escriptreader_lib'])
551  env.Alias('install_finley', ['build_finley', 'target_install_finley_so', 'target_install_finleycpp_so', 'target_install_finley_py'])  env.Alias('install_escriptreader', ['build_escriptreader', 'install_escriptreader_lib'])
552    
553  # Now gather all the above into a couple easy targets: build_all and install_all  # Now gather all the above into some easy targets: build_all and install_all
554  build_all_list = []  build_all_list = []
555  build_all_list += ['build_esysUtils']  build_all_list += ['build_esysUtils']
556  build_all_list += ['build_paso']  build_all_list += ['build_paso']
 build_all_list += ['build_dataexporter']  
557  build_all_list += ['build_escript']  build_all_list += ['build_escript']
558    build_all_list += ['build_pasowrap']
559    build_all_list += ['build_dudley']
560  build_all_list += ['build_finley']  build_all_list += ['build_finley']
561  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  build_all_list += ['build_ripley']
562  #if not IS_WINDOWS_PLATFORM:    build_all_list += ['target_escript_wrapper']  build_all_list += ['build_weipa']
563  build_all_list += ['target_escriptconvert']  if not IS_WINDOWS: build_all_list += ['build_escriptreader']
564    if env['usempi']:   build_all_list += ['build_pythonMPI']
565    build_all_list += ['build_escriptconvert']
566  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
567    
568  install_all_list = []  install_all_list = []
569  install_all_list += ['target_init']  install_all_list += ['target_init']
570  install_all_list += ['install_esysUtils']  install_all_list += ['install_esysUtils']
571  install_all_list += ['install_paso']  install_all_list += ['install_paso']
 install_all_list += ['install_dataexporter']  
572  install_all_list += ['install_escript']  install_all_list += ['install_escript']
573    install_all_list += ['install_pasowrap']
574    install_all_list += ['install_dudley']
575  install_all_list += ['install_finley']  install_all_list += ['install_finley']
576  install_all_list += ['target_install_pyvisi_py']  install_all_list += ['install_ripley']
577  install_all_list += ['target_install_modellib_py']  install_all_list += ['install_weipa']
578  install_all_list += ['target_install_pycad_py']  if not IS_WINDOWS: install_all_list += ['install_escriptreader']
579  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  install_all_list += ['install_downunder_py']
580  #if not IS_WINDOWS_PLATFORM:    install_all_list += ['target_install_escript_wrapper']  install_all_list += ['install_modellib_py']
581  if env['usesilo']:  install_all_list += ['target_install_escriptconvert']  install_all_list += ['install_pycad_py']
582  install_all_list += ['remember_options']  if env['usempi']:   install_all_list += ['install_pythonMPI']
583    install_all_list += ['install_escriptconvert']
584  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
585    
586  # Default target is install  # Default target is install
587  env.Default('install_all')  env.Default('install_all')
588    
589  ############ Targets to build and run the test suite ###########  ################## Targets to build and run the test suite ###################
590    
591  env.Alias('build_cppunittest', ['target_install_cppunittest_headers', 'target_cppunittest_a'])  if not env['cppunit']:
592  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])      test_msg = env.Command('.dummy.', None, '@echo "Cannot run C++ unit tests, CppUnit not found!";exit 1')
593  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])      env.Alias('run_tests', test_msg)
594  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])      env.Alias('build_tests', '')
595    env.Alias('run_tests', ['install_all'])
596    env.Alias('all_tests', ['install_all', 'run_tests', 'py_tests'])
597  env.Alias('build_full',['install_all','build_tests','build_py_tests'])  env.Alias('build_full',['install_all','build_tests','build_py_tests'])
598    env.Alias('build_PasoTests','$BUILD_DIR/$PLATFORM/paso/profiling/PasoTests')
599    
600    ##################### Targets to build the documentation #####################
601    
602  ############ Targets to build the documentation ################  env.Alias('pdfdocs',['user_pdf', 'install_pdf', 'cookbook_pdf', 'inversion_pdf'])
603    env.Alias('basedocs', ['pdfdocs','examples_tarfile', 'examples_zipfile', 'api_doxygen'])
604  env.Alias('api_epydoc','install_all')  env.Alias('docs', ['basedocs', 'sphinxdoc'])
605    env.Alias('release_prep', ['docs', 'install_all'])
606  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html','install_pdf', 'cookbook_pdf'])  env.Alias('release_prep_old', ['basedocs', 'api_epydoc', 'install_all'])
   
 build_platform=os.name  
   
 if not IS_WINDOWS_PLATFORM:  
    try:  
     utest=open("utest.sh","w")  
     #Sometimes Mac python says it is posix  
     if (build_platform=='posix') and platform.system()=="Darwin":  
         build_platform='darwin'  
     utest.write(GroupTest.makeHeader(build_platform))  
     for tests in TestGroups:  
         utest.write(tests.makeString())  
     utest.close()  
     os.chmod("utest.sh",stat.S_IRWXU|stat.S_IRGRP|stat.S_IXGRP|stat.S_IROTH|stat.S_IXOTH)  
     print "utest.sh written"  
    except IOError:  
     print "Error attempting to write unittests file."  
     sys.exit(1)  
   
    #Make sure that the escript wrapper is in place  
    if not os.path.isfile(os.path.join(env['bininstall'],'escript')):  
        print "Copying escript wrapper"  
        shutil.copy("bin/escript",os.path.join(env['bininstall'],'escript'))  
607    
608  ############ Targets to build PasoTests suite ################  # The test scripts are always generated, this target allows us to
609    # generate the testscripts without doing a full build
610    env.Alias('testscripts',[])
611    
612    if not IS_WINDOWS:
613        generateTestScripts(env, TestGroups)
614    
615    
616    
617    ######################## Summarize our environment ###########################
618    def print_summary():
619        print("")
620        print("*** Config Summary (see config.log and <prefix>/lib/buildvars for details) ***")
621        print("Escript/Finley revision %s"%global_revision)
622        print("  Install prefix:  %s"%env['prefix'])
623        print("          Python:  %s"%sysconfig.PREFIX)
624        print("           boost:  %s"%env['boost_prefix'])
625        if env['numpy_h']:
626            print("           numpy:  YES (with headers)")
627        else:
628            print("           numpy:  YES (without headers)")
629        if env['usempi']:
630            print("             MPI:  YES (flavour: %s)"%env['mpi'])
631        else:
632            print("             MPI:  DISABLED")
633        if env['uselapack']:
634            print("          LAPACK:  YES (flavour: %s)"%env['lapack'])
635        else:
636            print("          LAPACK:  DISABLED")
637        d_list=[]
638        e_list=[]
639        for i in 'debug','openmp','boomeramg','gdal','mkl','netcdf','papi','parmetis','pyproj','scipy','silo','sympy','umfpack','visit','vsl_random':
640            if env[i]: e_list.append(i)
641            else: d_list.append(i)
642        for i in e_list:
643            print("%16s:  YES"%i)
644        for i in d_list:
645            print("%16s:  DISABLED"%i)
646        if env['cppunit']:
647            print("         CppUnit:  FOUND")
648        else:
649            print("         CppUnit:  NOT FOUND")
650        if env['gmsh']=='m':
651            print("            gmsh:  FOUND, MPI-ENABLED")
652        elif env['gmsh']=='s':
653            print("            gmsh:  FOUND")
654        else:
655            print("            gmsh:  NOT FOUND")
656    
657        if ((fatalwarning != '') and (env['werror'])):
658            print("  Treating warnings as errors")
659        else:
660            print("  NOT treating warnings as errors")
661        print("")
662        for w in env['warnings']:
663            print("WARNING: %s"%w)
664        if len(GetBuildFailures()):
665            print("\nERROR: build stopped due to errors\n")
666        else:
667            print("\nSUCCESS: build complete\n")
668    
669  env.Alias('build_PasoTests','build/'+build_platform+'/paso/profiling/PasoTests')  atexit.register(print_summary)
670    
 env.Alias('release_prep', ['docs', 'install_all'])  

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