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revision 2284 by gross, Fri Feb 20 02:10:59 2009 UTC revision 5250 by caltinay, Mon Nov 10 04:05:11 2014 UTC
# Line 1  Line 1 
1    ##############################################################################
 ########################################################  
2  #  #
3  # Copyright (c) 2003-2008 by University of Queensland  # Copyright (c) 2003-2014 by University of Queensland
4  # Earth Systems Science Computational Center (ESSCC)  # http://www.uq.edu.au
 # http://www.uq.edu.au/esscc  
5  #  #
6  # Primary Business: Queensland, Australia  # Primary Business: Queensland, Australia
7  # Licensed under the Open Software License version 3.0  # Licensed under the Open Software License version 3.0
8  # http://www.opensource.org/licenses/osl-3.0.php  # http://www.opensource.org/licenses/osl-3.0.php
9  #  #
10  ########################################################  # Development until 2012 by Earth Systems Science Computational Center (ESSCC)
11    # Development 2012-2013 by School of Earth Sciences
12    # Development from 2014 by Centre for Geoscience Computing (GeoComp)
13  EnsureSConsVersion(0,96,91)  #
14  EnsurePythonVersion(2,3)  ##############################################################################
   
 import sys, os, re, socket, platform  
   
 # Add our extensions  
 if os.path.isdir('scons'): sys.path.append('scons')  
 import scons_extensions  
15    
16  # Use /usr/lib64 if available, else /usr/lib  EnsureSConsVersion(0,98,1)
17  usr_lib = '/usr/lib'  EnsurePythonVersion(2,5)
 if os.path.isfile('/usr/lib64/libc.so'): usr_lib = '/usr/lib64'  
18    
19  # The string python2.4 or python2.5  import atexit, sys, os, platform, re
20  python_version = 'python%s.%s' % (sys.version_info[0], sys.version_info[1])  from distutils import sysconfig
21    from dependencies import *
22    from site_init import *
23    
24    # Version number to check for in options file. Increment when new features are
25    # added or existing options changed.
26    REQUIRED_OPTS_VERSION=202
27    
28  # MS Windows support, many thanks to PH  # MS Windows support, many thanks to PH
29  IS_WINDOWS_PLATFORM = (os.name== "nt")  IS_WINDOWS = (os.name == 'nt')
30    
31  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)  IS_OSX = (os.uname()[0] == 'Darwin')
32    
33  # Read configuration options from file scons/<hostname>_options.py  ########################## Determine options file ############################
34  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  # 1. command line
35  tmp = os.path.join("scons",hostname+"_options.py")  # 2. scons/<hostname>_options.py
36  options_file = ARGUMENTS.get('options_file', tmp)  # 3. name as part of a cluster
37  if not os.path.isfile(options_file):  options_file=ARGUMENTS.get('options_file', None)
38    options_file = False  if not options_file:
39    print "Options file not found (expected '%s')" % tmp      ext_dir = os.path.join(os.getcwd(), 'scons')
40  else:      hostname = platform.node().split('.')[0]
41    print "Options file is", options_file      for name in hostname, effectiveName(hostname):
42            mangledhostname = re.sub('[^0-9a-zA-Z]', '_', hostname)
43  # Load options file and command-line arguments          options_file = os.path.join(ext_dir, mangledhostname+'_options.py')
44  opts = Options(options_file, ARGUMENTS)          if os.path.isfile(options_file): break
45    
46  ############ Load build options ################################  if not os.path.isfile(options_file):
47        print("\nWARNING:\nOptions file %s" % options_file)
48  opts.AddOptions(      print("not found! Default options will be used which is most likely suboptimal.")
49  # Where to install esys stuff      print("We recommend that you copy the most relavent options file in the scons/os/")
50    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),      print("subdirectory and customize it to your needs.\n")
51    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),      options_file = None
52    ('bininstall', 'where the esys binaries will be installed',            os.path.join(prefix,'bin')),  
53    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),  ############################### Build options ################################
54    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),  
55  # Compilation options  default_prefix='/usr'
56    BoolOption('dodebug', 'For backwards compatibility', 'no'),  mpi_flavours=('no', 'none', 'MPT', 'MPICH', 'MPICH2', 'OPENMPI', 'INTELMPI')
57    BoolOption('usedebug', 'Do you want a debug build?', 'no'),  lapack_flavours=('none', 'clapack', 'mkl')
58    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),  
59    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),  vars = Variables(options_file, ARGUMENTS)
60    ('win_cc_name', 'windows C compiler name if needed', 'msvc'),  vars.AddVariables(
61    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below    PathVariable('options_file', 'Path to options file', options_file, PathVariable.PathIsFile),
62    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),    PathVariable('prefix', 'Installation prefix', Dir('#.').abspath, PathVariable.PathIsDirCreate),
63    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),    PathVariable('build_dir', 'Top-level build directory', Dir('#/build').abspath, PathVariable.PathIsDirCreate),
64    ('cc_debug', 'C compiler debug flags to use', '-DEFAULT_3'),    BoolVariable('verbose', 'Output full compile/link lines', False),
65    ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),  # Compiler/Linker options
66    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),    ('cxx', 'Path to C++ compiler', 'default'),
67    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),    ('cc_flags', 'Base C++ compiler flags', 'default'),
68    ('cc_extra', 'Extra C/C++ flags', ''),    ('cc_optim', 'Additional C++ flags for a non-debug build', 'default'),
69      ('cc_debug', 'Additional C++ flags for a debug build', 'default'),
70      ('cxx_extra', 'Extra C++ compiler flags', ''),
71    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
72    ('sys_libs', 'System libraries to link with', []),    ('nvcc', 'Path to CUDA compiler', 'default'),
73    ('ar_flags', 'Static library archiver flags to use', ''),    ('nvccflags', 'Base CUDA compiler flags', 'default'),
74    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'yes'),    BoolVariable('werror','Treat compiler warnings as errors', True),
75    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),    BoolVariable('debug', 'Compile with debug flags', False),
76    BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),    BoolVariable('openmp', 'Compile parallel version using OpenMP', False),
77    ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),    ('omp_flags', 'OpenMP compiler flags', 'default'),
78  # Python    ('omp_ldflags', 'OpenMP linker flags', 'default'),
79    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),  # Mandatory libraries
80    ('python_lib_path', 'Path to Python libs', usr_lib),    ('boost_prefix', 'Prefix/Paths of boost installation', default_prefix),
81    ('python_libs', 'Python libraries to link with', [python_version]),    ('boost_libs', 'Boost libraries to link with', ['boost_python-mt']),
82    ('python_cmd', 'Python command', 'python'),  # Mandatory for tests
83  # Boost    ('cppunit_prefix', 'Prefix/Paths of CppUnit installation', default_prefix),
84    ('boost_path', 'Path to Boost includes', '/usr/include'),    ('cppunit_libs', 'CppUnit libraries to link with', ['cppunit']),
85    ('boost_lib_path', 'Path to Boost libs', usr_lib),  # Optional libraries and options
86    ('boost_libs', 'Boost libraries to link with', ['boost_python']),    EnumVariable('mpi', 'Compile parallel version using MPI flavour', 'none', allowed_values=mpi_flavours),
87  # NetCDF    ('mpi_prefix', 'Prefix/Paths of MPI installation', default_prefix),
88    BoolOption('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),    ('mpi_libs', 'MPI shared libraries to link with', ['mpi']),
89    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),    BoolVariable('cuda', 'Enable GPU code with CUDA (requires thrust)', False),
90    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),    ('thrust_prefix', 'Prefix/Paths to NVidia thrust installation', default_prefix),
91    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),    BoolVariable('netcdf', 'Enable netCDF file support', False),
92  # MPI    ('netcdf_prefix', 'Prefix/Paths of netCDF installation', default_prefix),
93    BoolOption('useMPI', 'For backwards compatibility', 'no'),    ('netcdf_libs', 'netCDF libraries to link with', ['netcdf_c++', 'netcdf']),
94    BoolOption('usempi', 'Compile parallel version using MPI', 'no'),    BoolVariable('parmetis', 'Enable ParMETIS (requires MPI)', False),
95    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),    ('parmetis_prefix', 'Prefix/Paths of ParMETIS installation', default_prefix),
96    ('mpi_path', 'Path to MPI includes', '/usr/include'),    ('parmetis_libs', 'ParMETIS libraries to link with', ['parmetis', 'metis']),
97    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),    BoolVariable('mkl', 'Enable the Math Kernel Library', False),
98    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),    ('mkl_prefix', 'Prefix/Paths to MKL installation', default_prefix),
99    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver','mkl_em64t','guide','pthread']),
100  # ParMETIS    BoolVariable('umfpack', 'Enable UMFPACK', False),
101    BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),    ('umfpack_prefix', 'Prefix/Paths to UMFPACK installation', default_prefix),
102    ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),    ('umfpack_libs', 'UMFPACK libraries to link with', ['umfpack']),
103    ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),    BoolVariable('boomeramg', 'Enable BoomerAMG', False),
104    ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),    ('boomeramg_prefix', 'Prefix/Paths to BoomerAMG installation', default_prefix),
105  # PAPI    ('boomeramg_libs', 'BoomerAMG libraries to link with', ['boomeramg']),
106    BoolOption('usepapi', 'switch on/off the usage of PAPI', 'no'),    EnumVariable('lapack', 'Set LAPACK flavour', 'none', allowed_values=lapack_flavours),
107    ('papi_path', 'Path to PAPI includes', '/usr/include'),    ('lapack_prefix', 'Prefix/Paths to LAPACK installation', default_prefix),
108    ('papi_lib_path', 'Path to PAPI libs', usr_lib),    ('lapack_libs', 'LAPACK libraries to link with', []),
109    ('papi_libs', 'PAPI libraries to link with', ['papi']),    BoolVariable('silo', 'Enable the Silo file format in weipa', False),
110    BoolOption('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),    ('silo_prefix', 'Prefix/Paths to Silo installation', default_prefix),
 # MKL  
   BoolOption('usemkl', 'switch on/off the usage of MKL', 'no'),  
   ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),  
   ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),  
   ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),  
 # UMFPACK  
   BoolOption('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),  
   ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),  
   ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),  
   ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),  
   ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),  
 # Silo  
   BoolOption('usesilo', 'switch on/off the usage of Silo', 'yes'),  
   ('silo_path', 'Path to Silo includes', '/usr/include'),  
   ('silo_lib_path', 'Path to Silo libs', usr_lib),  
111    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
112  # AMD (used by UMFPACK)    BoolVariable('visit', 'Enable the VisIt simulation interface', False),
113    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    ('visit_prefix', 'Prefix/Paths to VisIt installation', default_prefix),
114    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('visit_libs', 'VisIt libraries to link with', ['simV2']),
115    ('amd_libs', 'AMD libraries to link with', ['amd']),    ListVariable('domains', 'Which domains to build', 'all',\
116  # BLAS (used by UMFPACK)                 ['dudley','finley','ripley','speckley']),
117    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),  # Advanced settings
118    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    #dudley_assemble_flags = -funroll-loops      to actually do something
119    ('blas_libs', 'BLAS libraries to link with', ['blas']),    ('dudley_assemble_flags', 'compiler flags for some dudley optimisations', ''),
120  # An option for specifying the compiler tools set (see windows branch).    # To enable passing function pointers through python
121    ('tools_names', 'allow control over the tools in the env setup', ['intelc']),    BoolVariable('iknowwhatimdoing', 'Allow non-standard C', False),
122  # finer control over library building, intel aggressive global optimisation    # An option for specifying the compiler tools (see windows branch)
123  # works with dynamic libraries on windows.    ('tools_names', 'Compiler tools to use', ['default']),
124    ('share_esysUtils', 'control static or dynamic esysUtils lib', False),    ('env_export', 'Environment variables to be passed to tools',[]),
125    ('share_paso', 'control static or dynamic paso lib', False)    EnumVariable('forcelazy', 'For testing use only - set the default value for autolazy', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
126      EnumVariable('forcecollres', 'For testing use only - set the default value for force resolving collective ops', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
127      ('build_shared', 'Build dynamic libraries only', False),
128      ('sys_libs', 'Extra libraries to link with', []),
129      ('escript_opts_version', 'Version of options file (do not specify on command line)'),
130      ('SVN_VERSION', 'Do not use from options file', -2),
131      ('pythoncmd', 'which python to compile with','python'),
132      ('usepython3', 'Is this a python3 build? (experimental)', False),
133      ('pythonlibname', 'Name of the python library to link. (This is found automatically for python2.X.)', ''),
134      ('pythonlibpath', 'Path to the python library. (You should not need to set this unless your python has moved)',''),
135      ('pythonincpath','Path to python include files. (You should not need to set this unless your python has moved',''),
136      BoolVariable('longindices', 'use long indices (for very large matrices)', False),
137      BoolVariable('BADPYTHONMACROS','Extra \#include to get around a python bug.', True),
138      BoolVariable('compressed_files','Enables reading from compressed binary files', True),
139      ('compression_libs', 'Compression libraries to link with', ['boost_iostreams']),
140      BoolVariable('papi', 'Enable PAPI', False),
141      ('papi_prefix', 'Prefix/Paths to PAPI installation', default_prefix),
142      ('papi_libs', 'PAPI libraries to link with', ['papi']),
143      BoolVariable('papi_instrument_solver', 'Use PAPI to instrument each iteration of the solver', False)
144  )  )
145    
146  ############ Specify which compilers to use ####################  ##################### Create environment and help text #######################
147    
148  # intelc uses regular expressions improperly and emits a warning about  # Intel's compiler uses regular expressions improperly and emits a warning
149  # failing to find the compilers.  This warning can be safely ignored.  # about failing to find the compilers. This warning can be safely ignored.
150    
151  if IS_WINDOWS_PLATFORM:  # PATH is needed so the compiler, linker and tools are found if they are not
152        env = Environment(options = opts)  # in default locations.
153        env = Environment(tools = ['default'] + env['tools_names'],  env = Environment(tools = ['default'], options = vars,
154                          options = opts)                    ENV = {'PATH': os.environ['PATH']})
155    
156    # set the vars for clang
157    def mkclang(env):
158        env['CXX']='clang++'
159    
160    if env['tools_names'] != ['default']:
161        zz=env['tools_names']
162        if 'clang' in zz:
163            zz.remove('clang')
164            zz.insert(0, mkclang)
165        env = Environment(tools = ['default'] + env['tools_names'], options = vars,
166                          ENV = {'PATH' : os.environ['PATH']})
167    
168    if options_file:
169        opts_valid=False
170        if 'escript_opts_version' in env.Dictionary() and \
171            int(env['escript_opts_version']) >= REQUIRED_OPTS_VERSION:
172                opts_valid=True
173        if opts_valid:
174            print("Using options in %s." % options_file)
175        else:
176            print("\nOptions file %s" % options_file)
177            print("is outdated! Please update the file by examining one of the TEMPLATE")
178            print("files in the scons/ subdirectory and setting escript_opts_version to %d.\n"%REQUIRED_OPTS_VERSION)
179            Exit(1)
180    
181    # Generate help text (scons -h)
182    Help(vars.GenerateHelpText(env))
183    
184    # Check for superfluous options
185    if len(vars.UnknownVariables())>0:
186        for k in vars.UnknownVariables():
187            print("Unknown option '%s'" % k)
188        Exit(1)
189    
190    if env['cuda']:
191        if env['nvcc'] != 'default':
192            env['NVCC'] = env['nvcc']
193        env.Tool('nvcc')
194    
195    # create dictionary which will be populated with info for buildvars file
196    env['buildvars']={}
197    # create list which will be populated with warnings if there are any
198    env['warnings']=[]
199    
200    #################### Make sure install directories exist #####################
201    
202    env['BUILD_DIR']=Dir(env['build_dir']).abspath
203    prefix=Dir(env['prefix']).abspath
204    env['buildvars']['prefix']=prefix
205    env['incinstall'] = os.path.join(prefix, 'include')
206    env['bininstall'] = os.path.join(prefix, 'bin')
207    env['libinstall'] = os.path.join(prefix, 'lib')
208    env['pyinstall']  = os.path.join(prefix, 'esys')
209    if not os.path.isdir(env['bininstall']):
210        os.makedirs(env['bininstall'])
211    if not os.path.isdir(env['libinstall']):
212        os.makedirs(env['libinstall'])
213    if not os.path.isdir(env['pyinstall']):
214        os.makedirs(env['pyinstall'])
215    
216    env.Append(CPPPATH = [env['incinstall']])
217    env.Append(LIBPATH = [env['libinstall']])
218    
219    ################# Fill in compiler options if not set above ##################
220    
221    if env['cxx'] != 'default': env['CXX']=env['cxx']
222    
223    # version >=9 of intel C++ compiler requires use of icpc to link in C++
224    # runtimes (icc does not)
225    if not IS_WINDOWS and os.uname()[4]=='ia64' and env['CXX']=='icpc':
226        env['LINK'] = env['CXX']
227    
228    # default compiler/linker options
229    cc_flags = ''
230    cc_optim = ''
231    cc_debug = ''
232    omp_flags = ''
233    omp_ldflags = ''
234    fatalwarning = '' # switch to turn warnings into errors
235    sysheaderopt = '' # how to indicate that a header is a system header
236    
237    # env['CC'] might be a full path
238    cc_name=os.path.basename(env['CXX'])
239    
240    if cc_name == 'icpc':
241        # Intel compiler
242        # #1875: offsetof applied to non-POD types is nonstandard (in boost)
243        # removed -std=c99 because icpc doesn't like it and we aren't using c anymore
244        cc_flags    = "-fPIC -w2 -wd1875 -Wno-unknown-pragmas"
245        cc_optim    = "-O3 -ftz -fno-alias -inline-level=2 -ipo -xHost"
246        cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
247        omp_flags   = "-openmp"
248        omp_ldflags = "-openmp -openmp_report=1"
249        fatalwarning = "-Werror"
250    elif cc_name[:3] == 'g++':
251        # GNU C++ on any system
252        # note that -ffast-math is not used because it breaks isnan(),
253        # see mantis #691
254        cc_flags     = "-pedantic -Wall -fPIC -Wno-unknown-pragmas -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"
255        cc_optim     = "-O3"
256        #max-vartrack-size: avoid vartrack limit being exceeded with escriptcpp.cpp
257        cc_debug     = "-g3 -O0 -D_GLIBCXX_DEBUG -DDOASSERT -DDOPROF -DBOUNDS_CHECK --param=max-vartrack-size=100000000"
258        omp_flags    = "-fopenmp"
259        omp_ldflags  = "-fopenmp"
260        fatalwarning = "-Werror"
261        sysheaderopt = "-isystem"
262    elif cc_name == 'cl':
263        # Microsoft Visual C on Windows
264        cc_flags     = "/EHsc /MD /GR /wd4068 /D_USE_MATH_DEFINES /DDLL_NETCDF"
265        cc_optim     = "/O2 /Op /W3"
266        cc_debug     = "/Od /RTCcsu /ZI /DBOUNDS_CHECK"
267        fatalwarning = "/WX"
268    elif cc_name == 'icl':
269        # Intel C on Windows
270        cc_flags     = '/EHsc /GR /MD'
271        cc_optim     = '/fast /Oi /W3 /Qssp /Qinline-factor- /Qinline-min-size=0 /Qunroll'
272        cc_debug     = '/Od /RTCcsu /Zi /Y- /debug:all /Qtrapuv'
273        omp_flags    = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
274        omp_ldflags  = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
275    
276    env['sysheaderopt']=sysheaderopt
277    
278    # set defaults if not otherwise specified
279    if env['cc_flags']    == 'default': env['cc_flags'] = cc_flags
280    if env['cc_optim']    == 'default': env['cc_optim'] = cc_optim
281    if env['cc_debug']    == 'default': env['cc_debug'] = cc_debug
282    if env['omp_flags']   == 'default': env['omp_flags'] = omp_flags
283    if env['omp_ldflags'] == 'default': env['omp_ldflags'] = omp_ldflags
284    if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
285    if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])
286    
287    if env['nvccflags'] != 'default':
288        env['NVCCFLAGS'] = env['nvccflags']
289        env['SHNVCCFLAGS'] = env['nvccflags'] + ' -shared'
290    
291    if env['BADPYTHONMACROS']:
292        env.Append(CPPDEFINES = ['BADPYTHONMACROS'])
293    
294    if env['longindices']:
295        env.Append(CPPDEFINES = ['ESYS_INDEXTYPE_LONG'])
296    
297    if env['usepython3']:
298        env.Append(CPPDEFINES=['ESPYTHON3'])
299    
300    # set up the autolazy values
301    if env['forcelazy'] == 'on':
302        env.Append(CPPDEFINES=['FAUTOLAZYON'])
303    elif env['forcelazy'] == 'off':
304        env.Append(CPPDEFINES=['FAUTOLAZYOFF'])
305    
306    # set up the collective resolve values
307    if env['forcecollres'] == 'on':
308        env.Append(CPPDEFINES=['FRESCOLLECTON'])
309    elif env['forcecollres'] == 'off':
310        env.Append(CPPDEFINES=['FRESCOLLECTOFF'])
311    
312    # allow non-standard C if requested
313    if env['iknowwhatimdoing']:
314        env.Append(CPPDEFINES=['IKNOWWHATIMDOING'])
315    
316    # Disable OpenMP if no flags provided
317    if env['openmp'] and env['omp_flags'] == '':
318       env['warnings'].append("OpenMP requested but no flags provided - disabling OpenMP!")
319       env['openmp'] = False
320    
321    if env['openmp']:
322        env.Append(CCFLAGS = env['omp_flags'])
323        if env['omp_ldflags'] != '': env.Append(LINKFLAGS = env['omp_ldflags'])
324    else:
325        env['omp_flags']=''
326        env['omp_ldflags']=''
327    
328    env['buildvars']['openmp']=int(env['openmp'])
329    
330    # add debug/non-debug compiler flags
331    env['buildvars']['debug']=int(env['debug'])
332    if env['debug']:
333        env.Append(CCFLAGS = env['cc_debug'])
334    else:
335        env.Append(CCFLAGS = env['cc_optim'])
336    
337    # always add cc_flags
338    env.Append(CCFLAGS = env['cc_flags'])
339    
340    # add system libraries
341    env.AppendUnique(LIBS = env['sys_libs'])
342    
343    # determine svn revision
344    global_revision=ARGUMENTS.get('SVN_VERSION', None)
345    if global_revision:
346        global_revision = re.sub(':.*', '', global_revision)
347        global_revision = re.sub('[^0-9]', '', global_revision)
348        if global_revision == '': global_revision='-2'
349  else:  else:
350     if socket.gethostname().split('.')[0] == 'service0':    # Get the global Subversion revision number for the getVersion() method
351        env = Environment(tools = ['default', 'intelc'], options = opts)    try:
352     elif os.uname()[4]=='ia64':      global_revision = os.popen('svnversion -n .').read()
353        env = Environment(tools = ['default', 'intelc'], options = opts)      global_revision = re.sub(':.*', '', global_revision)
354        if env['CXX'] == 'icpc':      global_revision = re.sub('[^0-9]', '', global_revision)
355           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)      if global_revision == '': global_revision='-2'
356     else:    except:
357        env = Environment(tools = ['default'], options = opts)      global_revision = '-1'
358  Help(opts.GenerateHelpText(env))  env['svn_revision']=global_revision
359    env['buildvars']['svn_revision']=global_revision
360  ############ Fill in compiler options if not set above #########  env.Append(CPPDEFINES=['SVN_VERSION='+global_revision])
361    
362  # Backwards compatibility: allow dodebug=yes and useMPI=yes  if IS_WINDOWS:
363  if env['dodebug']: env['usedebug'] = 1      if not env['build_shared']:
364  if env['useMPI']: env['usempi'] = 1          env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
365            env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
366  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  
367  # For both C and C++ you get: cc_flags and either the optim flags or debug flags  env['IS_WINDOWS']=IS_WINDOWS
368    
369  sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.  ###################### Copy required environment vars ########################
370    
371  if env["CC"] == "icc":  # Windows doesn't use LD_LIBRARY_PATH but PATH instead
372    # Intel compilers  if IS_WINDOWS:
373    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"      LD_LIBRARY_PATH_KEY='PATH'
374    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"      env['ENV']['LD_LIBRARY_PATH']=''
375    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  else:
376    omp_optim     = "-openmp -openmp_report0"      LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'
377    omp_debug     = "-openmp -openmp_report0"  
378    omp_libs      = ['guide', 'pthread']  env['LD_LIBRARY_PATH_KEY']=LD_LIBRARY_PATH_KEY
379    pedantic      = ""  
380    fatalwarning      = ""        # Switch to turn warnings into errors  # the following env variables are exported for the unit tests
381    sysheaderopt      = ""  
382  elif env["CC"] == "gcc":  for key in 'OMP_NUM_THREADS', 'ESCRIPT_NUM_PROCS', 'ESCRIPT_NUM_NODES':
383    # GNU C on any system      try:
384    cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"          env['ENV'][key] = os.environ[key]
385  #the long long warning occurs on the Mac      except KeyError:
386    cc_optim      = "-O3"          env['ENV'][key] = '1'
387    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  
388    omp_optim     = ""  env_export=env['env_export']
389    omp_debug     = ""  env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME','KMP_MONITOR_STACKSIZE','TMPDIR','TEMP','TMP','LD_PRELOAD'])
390    omp_libs      = []  
391    pedantic      = "-pedantic-errors -Wno-long-long"  for key in set(env_export):
392    fatalwarning      = "-Werror"      try:
393    sysheaderopt      = "-isystem "          env['ENV'][key] = os.environ[key]
394  elif env["CC"] == "cl":      except KeyError:
395    # Microsoft Visual C on Windows          pass
   cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"  
   cc_optim      = "/O2 /Op /MT /W3"  
   cc_debug      = "/Od /RTC1 /MTd /ZI -DBOUNDS_CHECK"  
   omp_optim     = ""  
   omp_debug     = ""  
   omp_libs      = []  
   pedantic      = ""  
   fatalwarning      = ""  
   sysheaderopt      = ""  
 elif env["CC"] == "icl":  
   # intel C on Windows, see windows_intelc_options.py for a start  
   pedantic      = ""  
   fatalwarning      = ""  
   sysheaderopt      = ""  
   
   
 # If not specified in hostname_options.py then set them here  
 if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  
 if env["cc_optim"]  == "-DEFAULT_2": env['cc_optim'] = cc_optim  
 if env["cc_debug"]  == "-DEFAULT_3": env['cc_debug'] = cc_debug  
 if env["omp_optim"] == "-DEFAULT_4": env['omp_optim'] = omp_optim  
 if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  
 if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  
   
 #set up the autolazy values  
 if env['forcelazy']    != "leave_alone":  
   if env['forcelazy'] == 'on':  
     env.Append(CPPDEFINES='FAUTOLAZYON')  
   else:  
      if env['forcelazy'] == 'off':  
     env.Append(CPPDEFINES='FAUTOLAZYOFF')  
   
 # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  
 if not env["useopenmp"]:  
   env['omp_optim'] = ""  
   env['omp_debug'] = ""  
   env['omp_libs'] = []  
   
 if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0  
   
 ############ Copy environment variables into scons env #########  
   
 try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']  
 except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1  
   
 try: env['ENV']['PATH'] = os.environ['PATH']  
 except KeyError: pass  
   
 try: env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']  
 except KeyError: pass  
   
 try: env['ENV']['C_INCLUDE_PATH'] = os.environ['C_INCLUDE_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['LD_LIBRARY_PATH'] = os.environ['LD_LIBRARY_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['DISPLAY'] = os.environ['DISPLAY']  
 except KeyError: pass  
   
 try: env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']  
 except KeyError: pass  
   
 try: env['ENV']['HOME'] = os.environ['HOME']  
 except KeyError: pass  
   
 # Configure for test suite  
 env.PrependENVPath('PYTHONPATH', prefix)  
 env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
   
 env['ENV']['ESCRIPT_ROOT'] = prefix  
   
 ############ Set up paths for Configure() ######################  
   
 # Make a copy of an environment  
 # Use env.Clone if available, but fall back on env.Copy for older version of scons  
 def clone_env(env):  
   if 'Clone' in dir(env): return env.Clone()    # scons-0.98  
   else:                   return env.Copy() # scons-0.96  
   
 # Add cc option -I<Escript>/trunk/include  
 env.Append(CPPPATH      = [Dir('include')])  
   
 # Add cc option -L<Escript>/trunk/lib  
 env.Append(LIBPATH      = [Dir(env['libinstall'])])  
   
 if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])  
 if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])  
   
 if env['usepedantic']: env.Append(CCFLAGS = pedantic)  
   
 # MS Windows  
 if IS_WINDOWS_PLATFORM:  
   env.PrependENVPath('PATH',    [env['boost_lib_path']])  
   env.PrependENVPath('PATH',    [env['libinstall']])  
   if not env['share_esysUtils'] :  
     env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])  
   if not env['share_paso'] :  
     env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])  
   
   if env['usenetcdf']:  
     env.PrependENVPath('PATH',  [env['netCDF_lib_path']])  
   
 env.Append(ARFLAGS = env['ar_flags'])  
   
 # Get the global Subversion revision number for getVersion() method  
 try:  
    global_revision = os.popen("svnversion -n .").read()  
    global_revision = re.sub(":.*", "", global_revision)  
    global_revision = re.sub("[^0-9]", "", global_revision)  
 except:  
    global_revision="-1"  
 if global_revision == "": global_revision="-2"  
 env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])  
   
 ############ numarray (required) ###############################  
396    
397  try:  try:
398    from numarray import identity      env.PrependENVPath(LD_LIBRARY_PATH_KEY, os.environ[LD_LIBRARY_PATH_KEY])
399  except ImportError:  except KeyError:
400    print "Cannot import numarray, you need to set your PYTHONPATH"      pass
   sys.exit(1)  
   
 ############ C compiler (required) #############################  
   
 # Create a Configure() environment for checking existence of required libraries and headers  
 conf = Configure(clone_env(env))  
   
 # Test that the compiler is working  
 if not conf.CheckFunc('printf'):  
    print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])  
    sys.exit(1)  
   
 if conf.CheckFunc('gethostname'):  
   conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])  
   
 ############ python libraries (required) #######################  
   
   
 if not sysheaderopt =="":  
   conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])  
 else:  
   conf.env.AppendUnique(CPPPATH     = [env['python_path']])  
   
 conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  
 conf.env.AppendUnique(LIBS      = [env['python_libs']])  
401    
402  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs  if IS_OSX:
   
 if not conf.CheckCHeader('Python.h'):  
   print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])  
   sys.exit(1)  
 if not conf.CheckFunc('Py_Exit'):  
   print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])  
   sys.exit(1)  
   
 ############ boost (required) ##################################  
   
 if not sysheaderopt =="":  
   conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))  
 else:  
   conf.env.AppendUnique(CPPPATH     = [env['boost_path']])  
   
 conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  
 conf.env.AppendUnique(LIBS      = [env['boost_libs']])  
   
 conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs  
   
 if not conf.CheckCXXHeader('boost/python.hpp'):  
   print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])  
   sys.exit(1)  
   
 if not conf.CheckFunc('PyObject_SetAttr'):  
   print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])  
   sys.exit(1)  
   
 # Commit changes to environment  
 env = conf.Finish()  
   
 ############ VTK (optional) ####################################  
   
 if env['usevtk']:  
403    try:    try:
404      import vtk      env.PrependENVPath('DYLD_LIBRARY_PATH', os.environ['DYLD_LIBRARY_PATH'])
405      env['usevtk'] = 1    except KeyError:
406    except ImportError:      pass
     env['usevtk'] = 0  
   
 # Add VTK to environment env if it was found  
 if env['usevtk']:  
   env.Append(CPPDEFINES = ['USE_VTK'])  
   
 ############ NetCDF (optional) #################################  
   
 conf = Configure(clone_env(env))  
   
 if env['usenetcdf']:  
   conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])  
   conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs  
   
 if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  
 if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  
   
 # Add NetCDF to environment env if it was found  
 if env['usenetcdf']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['USE_NETCDF'])  
 else:  
   conf.Finish()  
   
 ############ PAPI (optional) ###################################  
   
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env))  
   
 if env['usepapi']:  
   conf.env.AppendUnique(CPPPATH = [env['papi_path']])  
   conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['papi_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs  
   
 if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  
 if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  
   
 # Add PAPI to environment env if it was found  
 if env['usepapi']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['BLOCKPAPI'])  
 else:  
   conf.Finish()  
   
 ############ MKL (optional) ####################################  
407    
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env))  
408    
409  if env['usemkl']:  # these shouldn't be needed
410    conf.env.AppendUnique(CPPPATH = [env['mkl_path']])  #for key in 'C_INCLUDE_PATH','CPLUS_INCLUDE_PATH','LIBRARY_PATH':
411    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])  #    try:
412    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])  #        env['ENV'][key] = os.environ[key]
413    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs  #    except KeyError:
414    #        pass
 if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  
 if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0  
   
 # Add MKL to environment env if it was found  
 if env['usemkl']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['MKL'])  
 else:  
   conf.Finish()  
415    
416  ############ UMFPACK (optional) ################################  try:
417        env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
418    except KeyError:
419        pass
420    
421  # Start a new configure environment that reflects what we've already found  ######################## Add some custom builders ############################
 conf = Configure(clone_env(env))  
422    
423  if env['useumfpack']:  if env['pythoncmd']=='python':
424    conf.env.AppendUnique(CPPPATH = [env['ufc_path']])      py_builder = Builder(action = build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
   conf.env.AppendUnique(CPPPATH = [env['umf_path']])  
   conf.env.AppendUnique(LIBPATH = [env['umf_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['umf_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['amd_path']])  
   conf.env.AppendUnique(LIBPATH = [env['amd_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['amd_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['blas_path']])  
   conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['blas_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs  
   
 if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
 # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?  
   
 # Add UMFPACK to environment env if it was found  
 if env['useumfpack']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['UMFPACK'])  
425  else:  else:
426    conf.Finish()      py_builder = Builder(action = env['pythoncmd']+" scripts/py_comp.py $SOURCE $TARGET", suffix = '.pyc', src_suffix = '.py', single_source=True)
427    env.Append(BUILDERS = {'PyCompile' : py_builder});
428    
429  ############ Silo (optional) ###################################  runUnitTest_builder = Builder(action = runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
430    env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
431    
432  if env['usesilo']:  runPyUnitTest_builder = Builder(action = runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
433    conf = Configure(clone_env(env))  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
   conf.env.AppendUnique(CPPPATH = [env['silo_path']])  
   conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])  
   conf.env.AppendUnique(LIBS = [env['silo_libs']])  
   if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0  
   if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0  
   conf.Finish()  
   
 # Add the path to Silo to environment env if it was found.  
 # Note that we do not add the libs since they are only needed for the  
 # escriptreader library and tools.  
 if env['usesilo']:  
   env.AppendUnique(CPPPATH = [env['silo_path']])  
   env.AppendUnique(LIBPATH = [env['silo_lib_path']])  
   env.Append(CPPDEFINES = ['HAVE_SILO'])  
   
 ############ Add the compiler flags ############################  
   
 # Enable debug by choosing either cc_debug or cc_optim  
 if env['usedebug']:  
   env.Append(CCFLAGS        = env['cc_debug'])  
   env.Append(CCFLAGS        = env['omp_debug'])  
 else:  
   env.Append(CCFLAGS        = env['cc_optim'])  
   env.Append(CCFLAGS        = env['omp_optim'])  
434    
435  # Always use cc_flags  runPyExample_builder = Builder(action = runPyExample, suffix = '.passed', src_suffic='.py', single_source=True)
436  env.Append(CCFLAGS      = env['cc_flags'])  env.Append(BUILDERS = {'RunPyExample' : runPyExample_builder});
 env.Append(LIBS         = [env['omp_libs']])  
437    
438    epstopdfbuilder = Builder(action = eps2pdf, suffix='.pdf', src_suffix='.eps', single_source=True)
439    env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
440    
441  ############ Add some custom builders ##########################  ############################ Dependency checks ###############################
442    
443  py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  ######## Compiler
444  env.Append(BUILDERS = {'PyCompile' : py_builder});  env=checkCompiler(env)
445    
446  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  ######## Python headers & library (required)
447  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  env=checkPython(env)
448    
449  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  ######## boost & boost-python (required)
450  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  env=checkBoost(env)
451    
452  ############ MPI (optional) ####################################  ######## NVCC version (optional)
453    if env['cuda']:
454        env=checkCudaVersion(env)
455    
456  # Create a modified environment for MPI programs (identical to env if usempi=no)  ######## numpy (required) and numpy headers (optional)
457  env_mpi = clone_env(env)  env=checkNumpy(env)
458    
459  # Start a new configure environment that reflects what we've already found  ######## CppUnit (required for tests)
460  conf = Configure(clone_env(env_mpi))  env=checkCppUnit(env)
461    
462  if env_mpi['usempi']:  ######## optional python modules (sympy, pyproj)
463    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])  env=checkOptionalModules(env)
   conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs  
   
 if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  
 if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  
   
 # Add MPI to environment env_mpi if it was found  
 if env_mpi['usempi']:  
   env_mpi = conf.Finish()  
   env_mpi.Append(CPPDEFINES = ['PASO_MPI', 'MPI_NO_CPPBIND', env_mpi['MPICH_IGNORE_CXX_SEEK']])  
 else:  
   conf.Finish()  
464    
465  env['usempi'] = env_mpi['usempi']  ######## optional dependencies (netCDF, PAPI, MKL, UMFPACK, Lapack, Silo, ...)
466    env=checkOptionalLibraries(env)
467    
468  ############ ParMETIS (optional) ###############################  ######## PDFLaTeX (for documentation)
469    env=checkPDFLatex(env)
470    
471  # Start a new configure environment that reflects what we've already found  # keep some of our install paths first in the list for the unit tests
472  conf = Configure(clone_env(env_mpi))  env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
473    env.PrependENVPath('PYTHONPATH', prefix)
474    env['ENV']['ESCRIPT_ROOT'] = prefix
475    
476  if not env_mpi['usempi']: env_mpi['useparmetis'] = 0  if not env['verbose']:
477        env['CXXCOMSTR'] = "Compiling $TARGET"
478        env['SHCXXCOMSTR'] = "Compiling $TARGET"
479        env['ARCOMSTR'] = "Linking $TARGET"
480        env['LINKCOMSTR'] = "Linking $TARGET"
481        env['SHLINKCOMSTR'] = "Linking $TARGET"
482        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
483        env['BIBTEXCOMSTR'] = "Generating bibliography $TARGET"
484        env['MAKEINDEXCOMSTR'] = "Generating index $TARGET"
485        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
486        #Progress(['Checking -\r', 'Checking \\\r', 'Checking |\r', 'Checking /\r'], interval=17)
487    
488    ####################### Configure the subdirectories #########################
489    
490    # remove obsolete files
491    if not env['usempi']:
492        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPI')))
493        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPIredirect')))
494    
495  if env_mpi['useparmetis']:  from grouptest import *
496    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])  TestGroups=[]
   conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs  
497    
498  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  # keep an environment without warnings-as-errors
499  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  dodgy_env=env.Clone()
500    
501  # Add ParMETIS to environment env_mpi if it was found  # now add warnings-as-errors flags. This needs to be done after configuration
502  if env_mpi['useparmetis']:  # because the scons test files have warnings in them
503    env_mpi = conf.Finish()  if ((fatalwarning != '') and (env['werror'])):
504    env_mpi.Append(CPPDEFINES = ['USE_PARMETIS'])      env.Append(CCFLAGS = fatalwarning)
 else:  
   conf.Finish()  
505    
506  env['useparmetis'] = env_mpi['useparmetis']  Export(
507      ['env',
508       'dodgy_env',
509       'IS_WINDOWS',
510       'TestGroups'
511      ]
512    )
513    
514  ############ Now we switch on Warnings as errors ###############  #do not auto build
515    env.SConscript(dirs = ['tools/escriptconvert'], variant_dir='$BUILD_DIR/$PLATFORM/tools/escriptconvert', duplicate=0)
516    env.SConscript(dirs = ['paso/src'], variant_dir='$BUILD_DIR/$PLATFORM/paso', duplicate=0)
517    env.SConscript(dirs = ['weipa/src'], variant_dir='$BUILD_DIR/$PLATFORM/weipa', duplicate=0)
518    env.SConscript(dirs = ['escript/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/escript', duplicate=0)
519    
520    env.SConscript(dirs = ['cusplibrary'])
521    
522    #This will pull in the escriptcore/py_src and escriptcore/test
523    env.SConscript(dirs = ['escriptcore/src'], variant_dir='$BUILD_DIR/$PLATFORM/escriptcore', duplicate=0)
524    env.SConscript(dirs = ['esysUtils/src'], variant_dir='$BUILD_DIR/$PLATFORM/esysUtils', duplicate=0)
525    env.SConscript(dirs = ['pasowrap/src'], variant_dir='$BUILD_DIR/$PLATFORM/pasowrap', duplicate=0)
526    if 'dudley' in env['domains']:
527        env.SConscript(dirs = ['dudley/src'], variant_dir='$BUILD_DIR/$PLATFORM/dudley', duplicate=0)
528    if 'finley' in env['domains']:
529        env.SConscript(dirs = ['finley/src'], variant_dir='$BUILD_DIR/$PLATFORM/finley', duplicate=0)
530    if 'ripley' in env['domains']:
531        env.SConscript(dirs = ['ripley/src'], variant_dir='$BUILD_DIR/$PLATFORM/ripley', duplicate=0)
532    if 'speckley' in env['domains']:
533        env.SConscript(dirs = ['speckley/src'], variant_dir='$BUILD_DIR/$PLATFORM/speckley', duplicate=0)
534    env.SConscript(dirs = ['downunder/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/downunder', duplicate=0)
535    env.SConscript(dirs = ['modellib/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/modellib', duplicate=0)
536    env.SConscript(dirs = ['pycad/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pycad', duplicate=0)
537    env.SConscript(dirs = ['pythonMPI/src'], variant_dir='$BUILD_DIR/$PLATFORM/pythonMPI', duplicate=0)
538    env.SConscript(dirs = ['doc'], variant_dir='$BUILD_DIR/$PLATFORM/doc', duplicate=0)
539    env.SConscript(dirs = ['paso/profiling'], variant_dir='$BUILD_DIR/$PLATFORM/paso/profiling', duplicate=0)
540    
 #this needs to be done after configuration because the scons test files have warnings in them  
541    
542  if ((fatalwarning != "") and (env['usewarnings'])):  ######################## Populate the buildvars file #########################
   env.Append(CCFLAGS        = fatalwarning)  
   env_mpi.Append(CCFLAGS        = fatalwarning)  
   
 ############ Summarize our environment #########################  
   
 print ""  
 print "Summary of configuration (see ./config.log for information)"  
 print " Using python libraries"  
 print " Using numarray"  
 print " Using boost"  
 if env['usenetcdf']: print "    Using NetCDF"  
 else: print "   Not using NetCDF"  
 if env['usevtk']: print "   Using VTK"  
 else: print "   Not using VTK"  
 if env['usemkl']: print "   Using MKL"  
 else: print "   Not using MKL"  
 if env['useumfpack']: print "   Using UMFPACK"  
 else: print "   Not using UMFPACK"  
 if env['usesilo']: print "  Using Silo"  
 else: print "   Not using Silo"  
 if env['useopenmp']: print "    Using OpenMP"  
 else: print "   Not using OpenMP"  
 if env['usempi']: print "   Using MPI"  
 else: print "   Not using MPI"  
 if env['useparmetis']: print "  Using ParMETIS"  
 else: print "   Not using ParMETIS (requires MPI)"  
 if env['usepapi']: print "  Using PAPI"  
 else: print "   Not using PAPI"  
 if env['usedebug']: print " Compiling for debug"  
 else: print "   Not compiling for debug"  
 print " Installing in", prefix  
 if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"  
 else: print "   Not treating warnings as errors"  
 print ""  
   
 ############ Delete option-dependent files #####################  
   
 Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))  
 Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))  
 Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))  
 if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))  
543    
544    write_buildvars(env)
545    
546  ############ Build the subdirectories ##########################  ################### Targets to build and install libraries ###################
547    
548  from grouptest import *  target_init = env.Command(os.path.join(env['pyinstall'],'__init__.py'), None, Touch('$TARGET'))
549    env.Alias('target_init', [target_init])
550    # delete buildvars upon cleanup
551    env.Clean('target_init', os.path.join(env['libinstall'], 'buildvars'))
552    
553  TestGroups=[]  # The headers have to be installed prior to build in order to satisfy
554    # #include <paso/Common.h>
555    env.Alias('build_esysUtils', ['install_esysUtils_headers', 'build_esysUtils_lib'])
556    env.Alias('install_esysUtils', ['build_esysUtils', 'install_esysUtils_lib'])
557    
558  Export(  env.Alias('build_paso', ['install_paso_headers', 'build_paso_lib'])
559    ["env",  env.Alias('install_paso', ['build_paso', 'install_paso_lib'])
    "env_mpi",  
    "clone_env",  
    "IS_WINDOWS_PLATFORM",  
    "TestGroups"  
    ]  
   )  
   
 env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  
 env.SConscript(dirs = ['tools/libescriptreader/src'], build_dir='build/$PLATFORM/tools/libescriptreader', duplicate=0)  
 env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  
 env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  
 env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  
 env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  
 env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)  
 env.SConscript(dirs = ['doc'], build_dir='build/$PLATFORM/doc', duplicate=0)  
 env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  
 env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  
 env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  
 env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)  
 env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)  
   
   
 ############ Remember what optimizations we used ###############  
   
 remember_list = []  
   
 if env['usedebug']:  
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))  
   
 if env['usempi']:  
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))  
560    
561  if env['omp_optim'] != '':  env.Alias('build_escript', ['install_escript_headers', 'build_escript_lib', 'build_escriptcpp_lib'])
562    remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))  env.Alias('install_escript', ['build_escript', 'install_escript_lib', 'install_escriptcpp_lib', 'install_escriptcore_py', 'install_escript_py'])
563    
564  env.Alias('remember_options', remember_list)  env.Alias('build_pasowrap', ['install_pasowrap_headers', 'build_pasowrap_lib', 'build_pasowrapcpp_lib'])
565    env.Alias('install_pasowrap', ['build_pasowrap', 'install_pasowrap_lib', 'install_pasowrapcpp_lib', 'install_pasowrap_py'])
566    
567  ############ Targets to build and install libraries ############  if 'dudley' in env['domains']:
568        env.Alias('build_dudley', ['install_dudley_headers', 'build_dudley_lib', 'build_dudleycpp_lib'])
569        env.Alias('install_dudley', ['build_dudley', 'install_dudley_lib', 'install_dudleycpp_lib', 'install_dudley_py'])
570    
571  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  if 'finley' in env['domains']:
572  env.Alias('target_init', [target_init])      env.Alias('build_finley', ['install_finley_headers', 'build_finley_lib', 'build_finleycpp_lib'])
573        env.Alias('install_finley', ['build_finley', 'install_finley_lib', 'install_finleycpp_lib', 'install_finley_py'])
574    
575  # The headers have to be installed prior to build in order to satisfy #include <paso/Common.h>  if 'ripley' in env['domains']:
576  env.Alias('build_esysUtils', ['target_install_esysUtils_headers', 'target_esysUtils_a'])      env.Alias('build_ripley', ['install_cusp_headers', 'install_ripley_headers', 'build_ripley_lib', 'build_ripleycpp_lib'])
577  env.Alias('install_esysUtils', ['build_esysUtils', 'target_install_esysUtils_a'])      env.Alias('install_ripley', ['build_ripley', 'install_ripley_lib', 'install_ripleycpp_lib', 'install_ripley_py'])
578    
579  env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])  if 'speckley' in env['domains']:
580  env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])      env.Alias('build_speckley', ['install_speckley_headers', 'build_speckley_lib', 'build_speckleycpp_lib'])
581        env.Alias('install_speckley', ['build_speckley', 'install_speckley_lib', 'install_speckleycpp_lib', 'install_speckley_py'])
582    
583  env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])  env.Alias('build_weipa', ['install_weipa_headers', 'build_weipa_lib', 'build_weipacpp_lib'])
584  env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])  env.Alias('install_weipa', ['build_weipa', 'install_weipa_lib', 'install_weipacpp_lib', 'install_weipa_py'])
585    
586  env.Alias('build_finley', ['target_install_finley_headers', 'target_finley_so', 'target_finleycpp_so'])  env.Alias('build_escriptreader', ['install_weipa_headers', 'build_escriptreader_lib'])
587  env.Alias('install_finley', ['build_finley', 'target_install_finley_so', 'target_install_finleycpp_so', 'target_install_finley_py'])  env.Alias('install_escriptreader', ['build_escriptreader', 'install_escriptreader_lib'])
588    
589  # Now gather all the above into a couple easy targets: build_all and install_all  # Now gather all the above into some easy targets: build_all and install_all
590  build_all_list = []  build_all_list = []
591  build_all_list += ['build_esysUtils']  build_all_list += ['build_esysUtils']
592  build_all_list += ['build_paso']  build_all_list += ['build_paso']
593  build_all_list += ['build_escript']  build_all_list += ['build_escript']
594  build_all_list += ['build_finley']  build_all_list += ['build_pasowrap']
595  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  if 'dudley' in env['domains']: build_all_list += ['build_dudley']
596  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_finley_wrapper']  if 'finley' in env['domains']: build_all_list += ['build_finley']
597  if env['usesilo']:  build_all_list += ['target_escript2silo']  if 'ripley' in env['domains']: build_all_list += ['build_ripley']
598    if 'speckley' in env['domains']: build_all_list += ['build_speckley']
599    build_all_list += ['build_weipa']
600    if not IS_WINDOWS and 'finley' in env['domains']:
601        build_all_list += ['build_escriptreader']
602    if env['usempi']:   build_all_list += ['build_pythonMPI']
603  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
604    
605  install_all_list = []  install_all_list = []
# Line 711  install_all_list += ['target_init'] Line 607  install_all_list += ['target_init']
607  install_all_list += ['install_esysUtils']  install_all_list += ['install_esysUtils']
608  install_all_list += ['install_paso']  install_all_list += ['install_paso']
609  install_all_list += ['install_escript']  install_all_list += ['install_escript']
610  install_all_list += ['install_finley']  install_all_list += ['install_pasowrap']
611  install_all_list += ['target_install_pyvisi_py']  if 'dudley' in env['domains']: install_all_list += ['install_dudley']
612  install_all_list += ['target_install_modellib_py']  if 'finley' in env['domains']: install_all_list += ['install_finley']
613  install_all_list += ['target_install_pycad_py']  if 'ripley' in env['domains']: install_all_list += ['install_ripley']
614  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  if 'speckley' in env['domains']: install_all_list += ['install_speckley']
615  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_finley_wrapper']  install_all_list += ['install_weipa']
616  if env['usesilo']:  install_all_list += ['target_install_escript2silo']  if not IS_WINDOWS and 'finley' in env['domains']:
617  install_all_list += ['remember_options']      install_all_list += ['install_escriptreader']
618    install_all_list += ['install_downunder_py']
619    install_all_list += ['install_modellib_py']
620    install_all_list += ['install_pycad_py']
621    if env['usempi']:   install_all_list += ['install_pythonMPI']
622  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
623    
624  # Default target is install  # Default target is install
625  env.Default('install_all')  env.Default('install_all')
626    
627  ############ Targets to build and run the test suite ###########  ################## Targets to build and run the test suite ###################
628    
629    if not env['cppunit']:
630        test_msg = env.Command('.dummy.', None, '@echo "Cannot run C++ unit tests, CppUnit not found!";exit 1')
631        env.Alias('run_tests', test_msg)
632        env.Alias('build_tests', '')
633    env.Alias('run_tests', ['install_all'])
634    env.Alias('all_tests', ['install_all', 'run_tests', 'py_tests'])
635    env.Alias('build_full',['install_all','build_tests','build_py_tests'])
636    env.Alias('build_PasoTests','$BUILD_DIR/$PLATFORM/paso/profiling/PasoTests')
637    
638    ##################### Targets to build the documentation #####################
639    
640    env.Alias('pdfdocs',['user_pdf', 'install_pdf', 'cookbook_pdf', 'inversion_pdf'])
641    env.Alias('basedocs', ['pdfdocs','examples_tarfile', 'examples_zipfile', 'api_doxygen'])
642    env.Alias('docs', ['basedocs', 'sphinxdoc'])
643    env.Alias('release_prep', ['docs', 'install_all'])
644    env.Alias('release_prep_old', ['basedocs', 'api_epydoc', 'install_all'])
645    
646    # The test scripts are always generated, this target allows us to
647    # generate the testscripts without doing a full build
648    env.Alias('testscripts',[])
649    
650    if not IS_WINDOWS:
651        generateTestScripts(env, TestGroups)
652    
653    
654    ######################## Summarize our environment ###########################
655    def print_summary():
656        print("")
657        print("*** Config Summary (see config.log and <prefix>/lib/buildvars for details) ***")
658        print("Escript/Finley revision %s"%global_revision)
659        print("  Install prefix:  %s"%env['prefix'])
660        print("          Python:  %s"%sysconfig.PREFIX)
661        print("           boost:  %s"%env['boost_prefix'])
662        if env['numpy_h']:
663            print("           numpy:  YES (with headers)")
664        else:
665            print("           numpy:  YES (without headers)")
666        if env['usempi']:
667            print("             MPI:  YES (flavour: %s)"%env['mpi'])
668        else:
669            print("             MPI:  NO")
670        if env['uselapack']:
671            print("          LAPACK:  YES (flavour: %s)"%env['lapack'])
672        else:
673            print("          LAPACK:  NO")
674        if env['cuda']:
675            print("            CUDA:  YES (nvcc: %s)"%env['nvcc_version'])
676        else:
677            print("            CUDA:  NO")
678        d_list=[]
679        e_list=[]
680        for i in 'debug','openmp','boomeramg','gdal','mkl','netcdf','papi','parmetis','pyproj','scipy','silo','sympy','umfpack','visit':
681            if env[i]: e_list.append(i)
682            else: d_list.append(i)
683        for i in e_list:
684            print("%16s:  YES"%i)
685        for i in d_list:
686            print("%16s:  NO"%i)
687        if env['cppunit']:
688            print("         CppUnit:  YES")
689        else:
690            print("         CppUnit:  NO")
691        if env['gmsh']=='m':
692            print("            gmsh:  YES, MPI-ENABLED")
693        elif env['gmsh']=='s':
694            print("            gmsh:  YES")
695        else:
696            print("            gmsh:  NO")
697        print(    "            gzip:  " + ("YES" if env['compressed_files'] else "NO"))
698    
699        if ((fatalwarning != '') and (env['werror'])):
700            print("  Treating warnings as errors")
701        else:
702            print("  NOT treating warnings as errors")
703        print("")
704        for w in env['warnings']:
705            print("WARNING: %s"%w)
706        if len(GetBuildFailures()):
707            print("\nERROR: build stopped due to errors\n")
708        else:
709            print("\nSUCCESS: build complete\n")
710    
711  env.Alias('build_cppunittest', ['target_install_cppunittest_headers', 'target_cppunittest_a'])  atexit.register(print_summary)
 env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])  
 env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])  
 env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])  
   
 ############ Targets to build the documentation ################  
   
 env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])  
   
 if not IS_WINDOWS_PLATFORM:  
    try:  
     utest=open("utest.sh","w")  
     build_platform=os.name      #Sometimes Mac python says it is posix  
     if (build_platform=='posix') and platform.system()=="Darwin":  
         build_platform='darwin'  
     utest.write(GroupTest.makeHeader(build_platform))  
     for tests in TestGroups:  
         utest.write(tests.makeString())  
     utest.close()  
     print "utest.sh written"  
    except IOError:  
     print "Error attempting to write unittests file."  
     sys.exit(1)  
712    

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