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revision 1247 by ksteube, Tue Aug 14 01:29:20 2007 UTC revision 3332 by jfenwick, Mon Nov 1 05:26:55 2010 UTC
# Line 1  Line 1 
1  #         Copyright 2006 by ACcESS MNRF  ########################################################
2  #  #
3  #              http://www.access.edu.au  # Copyright (c) 2003-2010 by University of Queensland
4  #       Primary Business: Queensland, Australia  # Earth Systems Science Computational Center (ESSCC)
5  #  Licensed under the Open Software License version 3.0  # http://www.uq.edu.au/esscc
6  #     http://www.opensource.org/licenses/osl-3.0.php  #
7    # Primary Business: Queensland, Australia
8  # top-level Scons configuration file for all esys13 modules  # Licensed under the Open Software License version 3.0
9  # Begin initialisation Section  # http://www.opensource.org/licenses/osl-3.0.php
10  # all of this section just intialises default environments and helper  #
11  # scripts. You shouldn't need to modify this section.  ########################################################
12  EnsureSConsVersion(0,96,91)  
13  EnsurePythonVersion(2,3)  EnsureSConsVersion(0,98,1)
14    EnsurePythonVersion(2,5)
15  #===============================================================  
16  #   import tools:  import sys, os, platform, re
17  import glob  from distutils import sysconfig
18  import sys, os, re  from site_init import *
19  # Add our extensions  
20  if sys.path.count('scons')==0: sys.path.append('scons')  # Version number to check for in options file. Increment when new features are
21  import scons_extensions  # added or existing options changed.
22    REQUIRED_OPTS_VERSION=200
23  #===============================================================  
24    # MS Windows support, many thanks to PH
25  tools_prefix="/usr"  IS_WINDOWS = (os.name == 'nt')
26    
27  #==============================================================================================      ########################## Determine options file ############################
28  #      # 1. command line
29  #    get the installation prefix  # 2. scons/<hostname>_options.py
30  #  # 3. name as part of a cluster
31  prefix = ARGUMENTS.get('prefix', '/usr')  options_file=ARGUMENTS.get('options_file', None)
32    if not options_file:
33        ext_dir = os.path.join(os.getcwd(), 'scons')
34        hostname = platform.node().split('.')[0]
35        for name in hostname, effectiveName(hostname):
36            mangledhostname = re.sub('[^0-9a-zA-Z]', '_', hostname)
37            options_file = os.path.join(ext_dir, mangledhostname+'_options.py')
38            if os.path.isfile(options_file): break
39    
40    if not os.path.isfile(options_file):
41        print("\nWARNING:\nOptions file %s" % options_file)
42        print("not found! Default options will be used which is most likely suboptimal.")
43        print("It is recommended that you copy one of the TEMPLATE files in the scons/")
44        print("subdirectory and customize it to your needs.\n")
45        options_file = None
46    
47    ############################### Build options ################################
48    
49    default_prefix='/usr'
50    mpi_flavours=('none', 'MPT', 'MPICH', 'MPICH2', 'OPENMPI', 'INTELMPI')
51    lapack_flavours=('none', 'clapack', 'mkl')
52    
53    vars = Variables(options_file, ARGUMENTS)
54    vars.AddVariables(
55      PathVariable('options_file', 'Path to options file', options_file, PathVariable.PathIsFile),
56      PathVariable('prefix', 'Installation prefix', Dir('#.').abspath, PathVariable.PathIsDirCreate),
57      BoolVariable('verbose', 'Output full compile/link lines', False),
58    # Compiler/Linker options
59      ('cc', 'Path to C compiler', 'default'),
60      ('cxx', 'Path to C++ compiler', 'default'),
61      ('cc_flags', 'Base C/C++ compiler flags', 'default'),
62      ('cc_optim', 'Additional C/C++ flags for a non-debug build', 'default'),
63      ('cc_debug', 'Additional C/C++ flags for a debug build', 'default'),
64      ('cc_extra', 'Extra C compiler flags', ''),
65      ('cxx_extra', 'Extra C++ compiler flags', ''),
66      ('ld_extra', 'Extra linker flags', ''),
67      BoolVariable('werror','Treat compiler warnings as errors', True),
68      BoolVariable('debug', 'Compile with debug flags', False),
69      BoolVariable('openmp', 'Compile parallel version using OpenMP', False),
70      ('omp_flags', 'OpenMP compiler flags', 'default'),
71      ('omp_ldflags', 'OpenMP linker flags', 'default'),
72    # Mandatory libraries
73      ('boost_prefix', 'Prefix/Paths of boost installation', default_prefix),
74      ('boost_libs', 'Boost libraries to link with', ['boost_python']),
75    # Optional libraries and options
76      EnumVariable('mpi', 'Compile parallel version using MPI flavour', 'none', allowed_values=mpi_flavours),
77      ('mpi_prefix', 'Prefix/Paths of MPI installation', default_prefix),
78      ('mpi_libs', 'MPI shared libraries to link with', ['mpi']),
79      BoolVariable('netcdf', 'Enable netCDF file support', False),
80      ('netcdf_prefix', 'Prefix/Paths of netCDF installation', default_prefix),
81      ('netcdf_libs', 'netCDF libraries to link with', ['netcdf_c++', 'netcdf']),
82      BoolVariable('parmetis', 'Enable ParMETIS (requires MPI)', False),
83      ('parmetis_prefix', 'Prefix/Paths of ParMETIS installation', default_prefix),
84      ('parmetis_libs', 'ParMETIS libraries to link with', ['parmetis', 'metis']),
85      BoolVariable('papi', 'Enable PAPI', False),
86      ('papi_prefix', 'Prefix/Paths to PAPI installation', default_prefix),
87      ('papi_libs', 'PAPI libraries to link with', ['papi']),
88      BoolVariable('papi_instrument_solver', 'Use PAPI to instrument each iteration of the solver', False),
89      BoolVariable('mkl', 'Enable the Math Kernel Library', False),
90      ('mkl_prefix', 'Prefix/Paths to MKL installation', default_prefix),
91      ('mkl_libs', 'MKL libraries to link with', ['mkl_solver','mkl_em64t','guide','pthread']),
92      BoolVariable('umfpack', 'Enable UMFPACK', False),
93      ('umfpack_prefix', 'Prefix/Paths to UMFPACK installation', default_prefix),
94      ('umfpack_libs', 'UMFPACK libraries to link with', ['umfpack']),
95      EnumVariable('lapack', 'Set LAPACK flavour', 'none', allowed_values=lapack_flavours),
96      ('lapack_prefix', 'Prefix/Paths to LAPACK installation', default_prefix),
97      ('lapack_libs', 'LAPACK libraries to link with', []),
98      BoolVariable('silo', 'Enable the Silo file format in weipa', False),
99      ('silo_prefix', 'Prefix/Paths to Silo installation', default_prefix),
100      ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
101      BoolVariable('visit', 'Enable the VisIt simulation interface', False),
102      ('visit_prefix', 'Prefix/Paths to VisIt installation', default_prefix),
103      ('visit_libs', 'VisIt libraries to link with', ['simV2']),
104      BoolVariable('pyvisi', 'Enable pyvisi (deprecated, requires VTK module)', False),
105    # Advanced settings
106      #dudley_assemble_flags = -funroll-loops      to actually do something
107      ('dudley_assemble_flags', 'compiler flags for some dudley optimisations', ''),
108      # To enable passing function pointers through python
109      BoolVariable('iknowwhatimdoing', 'Allow non-standard C', False),
110      # An option for specifying the compiler tools (see windows branch)
111      ('tools_names', 'Compiler tools to use', ['default']),
112      ('env_export', 'Environment variables to be passed to tools',[]),
113      EnumVariable('forcelazy', 'For testing use only - set the default value for autolazy', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
114      EnumVariable('forcecollres', 'For testing use only - set the default value for force resolving collective ops', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
115      # finer control over library building, intel aggressive global optimisation
116      # works with dynamic libraries on windows.
117      ('share_esysutils', 'Build a dynamic esysUtils library', False),
118      ('share_paso', 'Build a dynamic paso library', False),
119      ('sys_libs', 'Extra libraries to link with', []),
120      ('escript_opts_version', 'Version of options file (do not specify on command line)'),
121    )
122    
123  # We may also need to know where python's site-packages subdirectory lives  ##################### Create environment and help text #######################
 python_version = 'python%s.%s'%(sys.version_info[0],sys.version_info[1])  
124    
125  # Install as a standard python package in /usr/lib64 if available, else in /usr/lib  # Intel's compiler uses regular expressions improperly and emits a warning
126  if os.path.isdir(  prefix+"/lib64/"+python_version+"/site-packages"):  # about failing to find the compilers. This warning can be safely ignored.
    sys_dir_packages =  prefix+"/lib64/"+python_version+"/site-packages/esys"  
    sys_dir_libraries = prefix+"/lib64"  
 else:  
    sys_dir_packages =  prefix+"/lib/"+python_version+"/site-packages/esys"  
    sys_dir_libraries = prefix+"/lib"  
   
 sys_dir_examples = prefix+"/share/doc/esys"  
   
 source_root = Dir('#.').abspath  
   
 dir_packages = os.path.join(source_root,"esys")  
 dir_examples = os.path.join(source_root,"examples")  
 dir_libraries = os.path.join(source_root,"lib")  
   
 print " Default packages local installation:    ", dir_packages  
 print " Default library local installation  ", dir_libraries  
 print " Default example local  installation:    ", dir_examples  
 print "Install prefix is: ", prefix  
 print " Default packages system installation:   ", sys_dir_packages  
 print " Default library system installation     ", sys_dir_libraries  
 print " Default example system installation:    ", sys_dir_examples  
   
 #==============================================================================================      
   
 # Default options and options help text  
 # These are defaults and can be overridden using command line arguments or an options file.  
 # if the options_file or ARGUMENTS do not exist then the ones listed as default here are used  
 # DO NOT CHANGE THEM HERE  
 # Where to install?  
 #==============================================================================================      
 #      
 #    get the options file if present:  
 #  
 options_file = ARGUMENTS.get('options_file','')  
127    
128  if not os.path.isfile(options_file) :  # PATH is needed so the compiler, linker and tools are found if they are not
129      options_file = False  # in default locations.
130    env = Environment(tools = ['default'], options = vars,
131                      ENV = {'PATH': os.environ['PATH']})
132    if env['tools_names'] != 'default':
133        env = Environment(tools = ['default'] + env['tools_names'], options = vars,
134                          ENV = {'PATH' : os.environ['PATH']})
135    
136    if options_file:
137        opts_valid=False
138        if 'escript_opts_version' in env.Dictionary() and \
139            int(env['escript_opts_version']) >= REQUIRED_OPTS_VERSION:
140                opts_valid=True
141        if opts_valid:
142            print("Using options in %s." % options_file)
143        else:
144            print("\nOptions file %s" % options_file)
145            print("is outdated! Please update the file by examining one of the TEMPLATE")
146            print("files in the scons/ subdirectory and setting escript_opts_version to %d.\n"%REQUIRED_OPTS_VERSION)
147            Exit(1)
148    
149    # Generate help text (scons -h)
150    Help(vars.GenerateHelpText(env))
151    
152    # Check for superfluous options
153    if len(vars.UnknownVariables())>0:
154        for k in vars.UnknownVariables():
155            print("Unknown option '%s'" % k)
156        Exit(1)
157    
158    #################### Make sure install directories exist #####################
159    
160    prefix=Dir(env['prefix']).abspath
161    env['incinstall'] = os.path.join(prefix, 'include')
162    env['bininstall'] = os.path.join(prefix, 'bin')
163    env['libinstall'] = os.path.join(prefix, 'lib')
164    env['pyinstall']  = os.path.join(prefix, 'esys')
165    if not os.path.isdir(env['bininstall']):
166        os.makedirs(env['bininstall'])
167    if not os.path.isdir(env['libinstall']):
168        os.makedirs(env['libinstall'])
169    if not os.path.isdir(env['pyinstall']):
170        os.makedirs(env['pyinstall'])
171    
172    env.Append(CPPPATH = [env['incinstall']])
173    env.Append(LIBPATH = [env['libinstall']])
174    
175    ################# Fill in compiler options if not set above ##################
176    
177    if env['cc'] != 'default': env['CC']=env['cc']
178    if env['cxx'] != 'default': env['CXX']=env['cxx']
179    
180    # version >=9 of intel C++ compiler requires use of icpc to link in C++
181    # runtimes (icc does not)
182    if not IS_WINDOWS and os.uname()[4]=='ia64' and env['CXX']=='icpc':
183        env['LINK'] = env['CXX']
184    
185    # default compiler/linker options
186    cc_flags = ''
187    cc_optim = ''
188    cc_debug = ''
189    omp_flags = ''
190    omp_ldflags = ''
191    fatalwarning = '' # switch to turn warnings into errors
192    sysheaderopt = '' # how to indicate that a header is a system header
193    
194    # env['CC'] might be a full path
195    cc_name=os.path.basename(env['CC'])
196    
197    if cc_name == 'icc':
198        # Intel compiler
199        cc_flags    = "-std=c99 -fPIC -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
200        cc_optim    = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias -ip"
201        cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
202        omp_flags   = "-openmp -openmp_report0"
203        omp_ldflags = "-openmp -openmp_report0 -lguide -lpthread"
204        fatalwarning = "-Werror"
205    elif cc_name[:3] == 'gcc':
206        # GNU C on any system
207        cc_flags     = "-pedantic -Wall -fPIC -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"
208        cc_optim     = "-O3"
209        cc_debug     = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
210        omp_flags    = "-fopenmp"
211        omp_ldflags  = "-fopenmp"
212        fatalwarning = "-Werror"
213        sysheaderopt = "-isystem"
214    elif cc_name == 'cl':
215        # Microsoft Visual C on Windows
216        cc_flags     = "/EHsc /MD /GR /wd4068 /D_USE_MATH_DEFINES /DDLL_NETCDF"
217        cc_optim     = "/O2 /Op /W3"
218        cc_debug     = "/Od /RTCcsu /ZI /DBOUNDS_CHECK"
219        fatalwarning = "/WX"
220    elif cc_name == 'icl':
221        # Intel C on Windows
222        cc_flags     = '/EHsc /GR /MD'
223        cc_optim     = '/fast /Oi /W3 /Qssp /Qinline-factor- /Qinline-min-size=0 /Qunroll'
224        cc_debug     = '/Od /RTCcsu /Zi /Y- /debug:all /Qtrapuv'
225        omp_flags    = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
226        omp_ldflags  = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
227    
228    # set defaults if not otherwise specified
229    if env['cc_flags']    == 'default': env['cc_flags'] = cc_flags
230    if env['cc_optim']    == 'default': env['cc_optim'] = cc_optim
231    if env['cc_debug']    == 'default': env['cc_debug'] = cc_debug
232    if env['omp_flags']   == 'default': env['omp_flags'] = omp_flags
233    if env['omp_ldflags'] == 'default': env['omp_ldflags'] = omp_ldflags
234    if env['cc_extra']  != '': env.Append(CFLAGS = env['cc_extra'])
235    if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
236    if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])
237    
238    # set up the autolazy values
239    if env['forcelazy'] == 'on':
240        env.Append(CPPDEFINES=['FAUTOLAZYON'])
241    elif env['forcelazy'] == 'off':
242        env.Append(CPPDEFINES=['FAUTOLAZYOFF'])
243    
244    # set up the collective resolve values
245    if env['forcecollres'] == 'on':
246        env.Append(CPPDEFINES=['FRESCOLLECTON'])
247    elif env['forcecollres'] == 'off':
248        env.Append(CPPDEFINES=['FRESCOLLECTOFF'])
249    
250    # allow non-standard C if requested
251    if env['iknowwhatimdoing']:
252        env.Append(CPPDEFINES=['IKNOWWHATIMDOING'])
253    
254    # Disable OpenMP if no flags provided
255    if env['openmp'] and env['omp_flags'] == '':
256       print("OpenMP requested but no flags provided - disabling OpenMP!")
257       env['openmp'] = False
258    
259    if env['openmp']:
260        env.Append(CCFLAGS = env['omp_flags'])
261        if env['omp_ldflags'] != '': env.Append(LINKFLAGS = env['omp_ldflags'])
262    else:
263        env['omp_flags']=''
264        env['omp_ldflags']=''
265    
266    # add debug/non-debug compiler flags
267    if env['debug']:
268        env.Append(CCFLAGS = env['cc_debug'])
269    else:
270        env.Append(CCFLAGS = env['cc_optim'])
271    
272    # always add cc_flags
273    env.Append(CCFLAGS = env['cc_flags'])
274    
275    # add system libraries
276    env.AppendUnique(LIBS = env['sys_libs'])
277    
278    # Get the global Subversion revision number for the getVersion() method
279    try:
280        global_revision = os.popen('svnversion -n .').read()
281        global_revision = re.sub(':.*', '', global_revision)
282        global_revision = re.sub('[^0-9]', '', global_revision)
283        if global_revision == '': global_revision='-2'
284    except:
285        global_revision = '-1'
286    env['svn_revision']=global_revision
287    env.Append(CPPDEFINES=['SVN_VERSION='+global_revision])
288    
289  if not options_file :  if IS_WINDOWS:
290     import socket      if not env['share_esysutils']:
291     from string import ascii_letters,digits          env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
292     hostname=""      if not env['share_paso']:
293     for s in socket.gethostname().split('.')[0]:          env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
       if s in ascii_letters+digits:  
          hostname+=s  
       else:  
          hostname+="_"  
    tmp = os.path.join("scons",hostname+"_options.py")  
   
    if os.path.isfile(tmp) :  
       options_file = tmp  
   
 IS_WINDOWS_PLATFORM = (os.name== "nt")  
   
 # If you're not going to tell me then......  
 # FIXME: add one for the altix too.  
 if not options_file :  
    if IS_WINDOWS_PLATFORM :  
       options_file = "scons/windows_mscv71_options.py"  
    else:  
       options_file = "scons/linux_gcc_eg_options.py"  
   
 # and load it  
 opts = Options(options_file, ARGUMENTS)  
 #================================================================  
 #  
 #   check if UMFPACK is installed on the system:  
 #  
 uf_root=None  
 for i in [ 'UMFPACK', 'umfpack', 'ufsparse', 'UFSPARSE']:  
    if os.path.isdir(os.path.join(tools_prefix,'include',i)):  
        uf_root=i  
        print i," is used form ",tools_prefix  
        break  
 if not uf_root==None:  
    umf_path_default=os.path.join(tools_prefix,'include',uf_root)  
    umf_lib_path_default=os.path.join(tools_prefix,'lib')  
    umf_libs_default=['umfpack']  
    amd_path_default=os.path.join(tools_prefix,'include',uf_root)  
    amd_lib_path_default=os.path.join(tools_prefix,'lib')  
    amd_libs_default=['amd']  
    ufc_path_default=os.path.join(tools_prefix,'include',uf_root)  
 else:  
    umf_path_default=None  
    umf_lib_path_default=None  
    umf_libs_default=None  
    amd_path_default=None  
    amd_lib_path_default=None  
    amd_libs_default=None  
    ufc_path_default=None  
 #  
 #==========================================================================  
 #  
 #    python installation:  
 #  
 python_path_default=os.path.join(tools_prefix,'include','python%s.%s'%(sys.version_info[0],sys.version_info[1]))  
 python_lib_path_default=os.path.join(tools_prefix,'lib')  
 python_lib_default="python%s.%s"%(sys.version_info[0],sys.version_info[1])  
294    
295  #==========================================================================  ###################### Copy required environment vars ########################
 #  
 #    boost installation:  
 #  
 boost_path_default=os.path.join(tools_prefix,'include')  
 boost_lib_path_default=os.path.join(tools_prefix,'lib')  
 boost_lib_default=['boost_python']  
 #==========================================================================  
 #  
 #    check if netCDF is installed on the system:  
 #  
 netCDF_path_default=os.path.join(tools_prefix,'include','netcdf-3')  
 netCDF_lib_path_default=os.path.join(tools_prefix,'lib','netcdf-3')  
296    
297  if os.path.isdir(netCDF_path_default) and os.path.isdir(netCDF_lib_path_default):  # Windows doesn't use LD_LIBRARY_PATH but PATH instead
298       useNetCDF_default='yes'  if IS_WINDOWS:
299       netCDF_libs_default=[ 'netcdf_c++', 'netcdf' ]      LD_LIBRARY_PATH_KEY='PATH'
300  else:      env['ENV']['LD_LIBRARY_PATH']=''
301       useNetCDF_default='no'  else:
302       netCDF_path_default=None      LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'
      netCDF_lib_path_default=None  
      netCDF_libs_default=None  
303    
304  #==========================================================================  # the following env variables are exported for the unit tests
 #  
 #    compile:  
 #  
 cc_flags_default='-O3 -std=c99 -ffast-math -fpic -Wno-unknown-pragmas -ansi -pedantic-errors'  
 cc_flags_debug_default='-g -O0 -ffast-math -std=c99 -fpic -Wno-unknown-pragmas -ansi -pedantic-errors'  
 cxx_flags_default='--no-warn -ansi'  
 cxx_flags_debug_default='--no-warn -ansi -DDOASSERT'  
 #==============================================================================================      
 # Default options and options help text  
 # These are defaults and can be overridden using command line arguments or an options file.  
 # if the options_file or ARGUMENTS do not exist then the ones listed as default here are used  
 # DO NOT CHANGE THEM HERE  
 opts.AddOptions(  
 # Where to install esys stuff  
   ('incinstall', 'where the esys headers will be installed',             Dir('#.').abspath+'/include'),  
   ('libinstall', 'where the esys libraries will be installed',           dir_libraries),  
   ('pyinstall', 'where the esys python modules will be installed',       dir_packages),  
   ('exinstall', 'where the esys examples will be installed',             dir_examples),  
   ('sys_libinstall', 'where the system esys libraries will be installed',       sys_dir_libraries),  
   ('sys_pyinstall', 'where the system esys python modules will be installed',   sys_dir_packages),  
   ('sys_exinstall', 'where the system esys examples will be installed',         sys_dir_examples),  
   ('src_zipfile', 'the source zip file will be installed.',              Dir('#.').abspath+"/release/escript_src.zip"),  
   ('test_zipfile', 'the test zip file will be installed.',               Dir('#.').abspath+"/release/escript_tests.zip"),  
   ('src_tarfile', 'the source tar file will be installed.',              Dir('#.').abspath+"/release/escript_src.tar.gz"),  
   ('test_tarfile', 'the test tar file will be installed.',               Dir('#.').abspath+"/release/escript_tests.tar.gz"),  
   ('examples_tarfile', 'the examples tar file will be installed.',       Dir('#.').abspath+"/release/doc/escript_examples.tar.gz"),  
   ('examples_zipfile', 'the examples zip file will be installed.',       Dir('#.').abspath+"/release/doc/escript_examples.zip"),  
   ('guide_pdf', 'name of the user guide in pdf format',                  Dir('#.').abspath+"/release/doc/user/guide.pdf"),  
   ('api_epydoc', 'name of the epydoc api docs directory',                Dir('#.').abspath+"/release/doc/epydoc"),  
   ('guide_html', 'name of the directory for user guide in html format',  Dir('#.').abspath+"/release/doc/user/html"),  
   ('api_doxygen', 'name of the doxygen api docs directory',prefix+"/release/doc/doxygen"),  
 # Compilation options  
   BoolOption('dodebug', 'Do you want a debug build?', 'no'),  
   ('options_file', "Optional file containing preferred options. Ignored if it doesn't exist (default: scons/<hostname>_options.py)", options_file),  
   ('cc_defines','C/C++ defines to use', None),  
   ('cc_flags','C compiler flags to use (Release build)', cc_flags_default),  
   ('cc_flags_debug', 'C compiler flags to use (Debug build)', cc_flags_debug_default),  
   ('cxx_flags', 'C++ compiler flags to use (Release build)', cxx_flags_default),  
   ('cxx_flags_debug', 'C++ compiler flags to use (Debug build)', cxx_flags_debug_default),  
   ('ar_flags', 'Static library archiver flags to use', None),  
   ('sys_libs', 'System libraries to link with', None),  
   ('tar_flags','flags for zip files','-c -z'),  
 # MKL  
   PathOption('mkl_path', 'Path to MKL includes', None),  
   PathOption('mkl_lib_path', 'Path to MKL libs', None),  
   ('mkl_libs', 'MKL libraries to link with', None),  
 # SCSL  
   PathOption('scsl_path', 'Path to SCSL includes', None),  
   PathOption('scsl_lib_path', 'Path to SCSL libs', None),  
   ('scsl_libs', 'SCSL libraries to link with', None),  
   ('scsl_libs_MPI', 'SCSL libraries to link with for MPI build', None),  
 # UMFPACK  
   PathOption('ufc_path', 'Path to UFconfig includes', ufc_path_default),  
   PathOption('umf_path', 'Path to UMFPACK includes', umf_path_default),  
   PathOption('umf_lib_path', 'Path to UMFPACK libs', umf_lib_path_default),  
   ('umf_libs', 'UMFPACK libraries to link with', umf_libs_default),  
 # AMD (used by UMFPACK)  
   PathOption('amd_path', 'Path to AMD includes', amd_path_default),  
   PathOption('amd_lib_path', 'Path to AMD libs', amd_lib_path_default),  
   ('amd_libs', 'AMD libraries to link with', amd_libs_default),  
 # BLAS  
   PathOption('blas_path', 'Path to BLAS includes', None),  
   PathOption('blas_lib_path', 'Path to BLAS libs', None),  
   ('blas_libs', 'BLAS libraries to link with', None),  
 # netCDF  
   ('useNetCDF', 'switch on/off the usage of netCDF', useNetCDF_default),  
   PathOption('netCDF_path', 'Path to netCDF includes', netCDF_path_default),  
   PathOption('netCDF_lib_path', 'Path to netCDF libs', netCDF_lib_path_default),  
   ('netCDF_libs', 'netCDF C++ libraries to link with', netCDF_libs_default),  
 # Python  
 # locations of include files for python  
 # FIXME: python_path should be python_inc_path and the same for boost etc.  
   PathOption('python_path', 'Path to Python includes', python_path_default),  
   PathOption('python_lib_path', 'Path to Python libs', python_lib_path_default),  
   ('python_lib', 'Python libraries to link with', python_lib_default),  
   ('python_cmd', 'Python command', 'python'),  
 # Boost  
   PathOption('boost_path', 'Path to Boost includes', boost_path_default),  
   PathOption('boost_lib_path', 'Path to Boost libs', boost_lib_path_default),  
   ('boost_lib', 'Boost libraries to link with', boost_lib_default),  
 # Doc building  
 #  PathOption('doxygen_path', 'Path to Doxygen executable', None),  
 #  PathOption('epydoc_path', 'Path to Epydoc executable', None),  
 # PAPI  
   PathOption('papi_path', 'Path to PAPI includes', None),  
   PathOption('papi_lib_path', 'Path to PAPI libs', None),  
   ('papi_libs', 'PAPI libraries to link with', None),  
 # MPI  
   BoolOption('useMPI', 'Compile parallel version using MPI', 'no'),  
 )  
 #=================================================================================================  
 #  
 #   Note: On the Altix the intel compilers are not automatically  
 #   detected by scons intelc.py script. The Altix has a different directory  
 #   path and in some locations the "modules" facility is used to support  
 #   multiple compiler versions. This forces the need to import the users PATH  
 #   environment which isn't the "scons way"  
 #   This doesn't impact linux and windows which will use the default compiler (g++ or msvc, or the intel compiler if it is installed on both platforms)  
 #   FIXME: Perhaps a modification to intelc.py will allow better support for ia64 on altix  
 #  
305    
306  if IS_WINDOWS_PLATFORM:  for key in 'OMP_NUM_THREADS', 'ESCRIPT_NUM_PROCS', 'ESCRIPT_NUM_NODES':
307        env = Environment(tools = ['default', 'msvc'], options = opts)      try:
308  else:          env['ENV'][key] = os.environ[key]
309     if os.uname()[4]=='ia64':      except KeyError:
310        env = Environment(tools = ['default', 'intelc'], options = opts)          env['ENV'][key] = 1
       if env['CXX'] == 'icpc':  
          env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not). FIXME: this behaviour could be directly incorporated into scons intelc.py  
    else:  
       env = Environment(tools = ['default'], options = opts)  
 Help(opts.GenerateHelpText(env))  
311    
312  #=================================================================================================  env_export=env['env_export']
313  #  env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME'])
 #     Initialise Scons Build Environment  
 #     check for user environment variables we are interested in  
 try:  
    tmp = os.environ['PYTHONPATH']  
    env['ENV']['PYTHONPATH'] = tmp  
 except KeyError:  
    pass  
314    
315  env.PrependENVPath('PYTHONPATH', source_root)  for key in set(env_export):
316        try:
317            env['ENV'][key] = os.environ[key]
318        except KeyError:
319            pass
320    
321  try:  try:
322     omp_num_threads = os.environ['OMP_NUM_THREADS']      env.PrependENVPath(LD_LIBRARY_PATH_KEY, os.environ[LD_LIBRARY_PATH_KEY])
323  except KeyError:  except KeyError:
324     omp_num_threads = 1      pass
325    
326  env['ENV']['OMP_NUM_THREADS'] = omp_num_threads  # these shouldn't be needed
327    #for key in 'C_INCLUDE_PATH','CPLUS_INCLUDE_PATH','LIBRARY_PATH':
328    #    try:
329    #        env['ENV'][key] = os.environ[key]
330    #    except KeyError:
331    #        pass
332    
333  try:  try:
334     env['ENV']['DISPLAY'] = os.environ['DISPLAY']      env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
    env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']  
335  except KeyError:  except KeyError:
336     pass      pass
337    
338  try:  ######################## Add some custom builders ############################
    tmp = os.environ['PATH']  
    env['ENV']['PATH'] = tmp  
 except KeyError:  
    pass  
339    
340  try:  py_builder = Builder(action = build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
    tmp = os.environ['LD_LIBRARY_PATH']  
    env['ENV']['LD_LIBRARY_PATH'] = tmp  
 except KeyError:  
    pass  
 #==========================================================================  
 #  
 #    Add some customer builders  
 #  
 py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  
341  env.Append(BUILDERS = {'PyCompile' : py_builder});  env.Append(BUILDERS = {'PyCompile' : py_builder});
342    
343  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed',  runUnitTest_builder = Builder(action = runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
                               src_suffix=env['PROGSUFFIX'], single_source=True)  
   
344  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
345    
346  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  runPyUnitTest_builder = Builder(action = runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
347  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
348    
349  # Convert the options which are held in environment variable into python variables for ease of handling and configure compilation options  epstopdfbuilder = Builder(action = eps2pdf, suffix='.pdf', src_suffix='.eps', single_source=True)
350  try:  env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
    incinstall = env['incinstall']  
    env.Append(CPPPATH = [incinstall,])  
 except KeyError:  
    incinstall = None  
 try:  
    libinstall = env['libinstall']  
    env.Append(LIBPATH = [libinstall,]) # Adds -L for building of libescript.so libfinley.so escriptcpp.so finleycpp.so  
    env.PrependENVPath('LD_LIBRARY_PATH', libinstall)  
    if env['PLATFORM'] == "win32":  
       env.PrependENVPath('PATH', libinstall)  
       env.PrependENVPath('PATH', env['boost_lib_path'])  
 except KeyError:  
    libinstall = None  
 try:  
    pyinstall = env['pyinstall'] # all targets will install into pyinstall/esys but PYTHONPATH points at straight pyinstall so you go import esys.escript etc  
 except KeyError:  
    pyinstall = None  
 try:  
    exinstall = env['exinstall']  
 except KeyError:  
    exinstall = None  
 try:  
    sys_libinstall = env['sys_libinstall']  
 except KeyError:  
    sys_libinstall = None  
 try:  
    sys_pyinstall = env['sys_pyinstall']  
 except KeyError:  
    sys_pyinstall = None  
 try:  
    sys_exinstall = env['sys_exinstall']  
 except KeyError:  
    sys_exinstall = None  
 try:  
    dodebug = env['dodebug']  
 except KeyError:  
    dodebug = None  
 try:  
    useMPI = env['useMPI']  
 except KeyError:  
    useMPI = None  
 try:  
    cc_defines = env['cc_defines']  
    env.Append(CPPDEFINES = cc_defines)  
 except KeyError:  
    pass  
   
   
 if dodebug:  
   if useMPI:  
     try:  
       flags = env['cc_flags_debug_MPI']  
       env.Append(CCFLAGS = flags)  
     except KeyError:  
       pass  
   else:  
     try:  
       flags = env['cc_flags_debug']  
       env.Append(CCFLAGS = flags)  
     except KeyError:  
       pass  
 else:  
   if useMPI:  
    try:  
      flags = env['cc_flags_MPI']  
      env.Append(CCFLAGS = flags)  
    except KeyError:  
       pass  
   else:  
    try:  
       flags = env['cc_flags']  
       env.Append(CCFLAGS = flags)  
    except KeyError:  
       pass  
 if dodebug:  
    if useMPI:  
      try:  
         flags = env['cxx_flags_debug_MPI']  
         env.Append(CXXFLAGS = flags)  
      except KeyError:  
         pass  
    else:  
      try:  
         flags = env['cxx_flags_debug']  
         env.Append(CXXFLAGS = flags)  
      except KeyError:  
         pass  
 else:  
    if useMPI:  
      try:  
         flags = env['cxx_flags_MPI']  
         env.Append(CXXFLAGS = flags)  
      except KeyError:  
         pass  
    else:  
      try:  
         flags = env['cxx_flags']  
         env.Append(CXXFLAGS = flags)  
      except KeyError:  
         pass  
 try:  
    flags = env['ar_flags']  
    env.Append(ARFLAGS = flags)  
 except KeyError:  
    ar_flags = None  
 try:  
    sys_libs = env['sys_libs']  
 except KeyError:  
    sys_libs = []  
351    
352  try:  ############################ Dependency checks ###############################
    tar_flags = env['tar_flags']  
    env.Replace(TARFLAGS = tar_flags)  
 except KeyError:  
    pass  
353    
354  try:  # Create a Configure() environment to check for compilers and python
355     includes = env['mkl_path']  conf = Configure(env.Clone())
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
356    
357  try:  ######## Test that the compilers work
    lib_path = env['mkl_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
358    
359  if useMPI:  if 'CheckCC' in dir(conf): # exists since scons 1.1.0
360     mkl_libs = []      if not conf.CheckCC():
361            print("Cannot run C compiler '%s' (check config.log)" % (env['CC']))
362            Exit(1)
363        if not conf.CheckCXX():
364            print("Cannot run C++ compiler '%s' (check config.log)" % (env['CXX']))
365            Exit(1)
366  else:  else:
367     try:      if not conf.CheckFunc('printf', language='c'):
368        mkl_libs = env['mkl_libs']          print("Cannot run C compiler '%s' (check config.log)" % (env['CC']))
369     except KeyError:          Exit(1)
370        mkl_libs = []      if not conf.CheckFunc('printf', language='c++'):
371            print("Cannot run C++ compiler '%s' (check config.log)" % (env['CXX']))
372  try:          Exit(1)
    includes = env['scsl_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
373    
374  try:  if conf.CheckFunc('gethostname'):
375     lib_path = env['scsl_lib_path']      conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
   
 if useMPI:  
   try:  
     scsl_libs = env['scsl_libs_MPI']  
   except KeyError:  
     scsl_libs = []  
 else:  
   try:  
     scsl_libs = env['scsl_libs']  
   except KeyError:  
     scsl_libs = []  
   
 try:  
    includes = env['umf_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
376    
377  try:  ######## Python headers & library (required)
    lib_path = env['umf_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
378    
379  if useMPI:  python_inc_path=sysconfig.get_python_inc()
380      umf_libs = []  if IS_WINDOWS:
381        python_lib_path=os.path.join(sysconfig.get_config_var('prefix'), 'libs')
382  else:  else:
383     try:      python_lib_path=sysconfig.get_config_var('LIBDIR')
384        umf_libs = env['umf_libs']  #python_libs=[sysconfig.get_config_var('LDLIBRARY')] # only on linux
385     except KeyError:  if IS_WINDOWS:
386        umf_libs = []      python_libs=['python%s%s'%(sys.version_info[0], sys.version_info[1])]
   
 try:  
    includes = env['ufc_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
   
 try:  
    includes = env['amd_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
   
 try:  
    lib_path = env['amd_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
   
 if useMPI:  
     amd_libs = []  
387  else:  else:
388     try:      python_libs=['python'+sysconfig.get_python_version()]
       amd_libs = env['amd_libs']  
    except KeyError:  
       amd_libs = []  
   
 try:  
    includes = env['blas_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
   
 try:  
    lib_path = env['blas_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
   
 try:  
    blas_libs = env['blas_libs']  
 except KeyError:  
    blas_libs = []  
   
 try:  
    useNetCDF = env['useNetCDF']  
 except KeyError:  
    useNetCDF = 'yes'  
    pass  
389    
390  if useNetCDF == 'yes':  if sysheaderopt == '':
391     try:      conf.env.AppendUnique(CPPPATH = [python_inc_path])
       netCDF_libs = env['netCDF_libs']  
    except KeyError:  
       pass  
   
    env.Append(LIBS = netCDF_libs)  
    env.Append(CPPDEFINES = [ 'USE_NETCDF' ])  
    try:  
       includes = env['netCDF_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
   
    try:  
       lib_path = env['netCDF_lib_path']  
       if IS_WINDOWS_PLATFORM: env['ENV']['PATH']+=";"+lib_path  
       env.Append(LIBPATH = [ lib_path, ])  
    except KeyError:  
       pass  
392  else:  else:
393     print "Warning: Installation is not configured with netCDF. Some I/O function may not be available."      conf.env.Append(CCFLAGS = [sysheaderopt, python_inc_path])
    netCDF_libs=[ ]  
   
 try:  
    includes = env['boost_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['boost_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    boost_lib = env['boost_lib']  
 except KeyError:  
    boost_lib = None  
 try:  
    includes = env['python_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['python_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    python_lib = env['python_lib']  
 except KeyError:  
    python_lib = None  
 try:  
    doxygen_path = env['doxygen_path']  
 except KeyError:  
    doxygen_path = None  
 try:  
    epydoc_path = env['epydoc_path']  
 except KeyError:  
    epydoc_path = None  
 try:  
    includes = env['papi_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['papi_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    papi_libs = env['papi_libs']  
 except KeyError:  
    papi_libs = None  
394    
395    conf.env.AppendUnique(LIBPATH = [python_lib_path])
396    conf.env.AppendUnique(LIBS = python_libs)
397    # The wrapper script needs to find the libs
398    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, python_lib_path)
399    
400  try:  if not conf.CheckCHeader('Python.h'):
401     src_zipfile = env.File(env['src_zipfile'])      print("Cannot find python include files (tried 'Python.h' in directory %s)" % (python_inc_path))
402  except KeyError:      Exit(1)
403     src_zipfile = None  if not conf.CheckFunc('Py_Exit'):
404  try:      print("Cannot find python library method Py_Main (tried %s in directory %s)" % (python_libs, python_lib_path))
405     test_zipfile = env.File(env['test_zipfile'])      Exit(1)
 except KeyError:  
    test_zipfile = None  
 try:  
    examples_zipfile = env.File(env['examples_zipfile'])  
 except KeyError:  
    examples_zipfile = None  
406    
407  try:  # Commit changes to environment
408     src_tarfile = env.File(env['src_tarfile'])  env = conf.Finish()
 except KeyError:  
    src_tarfile = None  
 try:  
    test_tarfile = env.File(env['test_tarfile'])  
 except KeyError:  
    test_tarfile = None  
 try:  
    examples_tarfile = env.File(env['examples_tarfile'])  
 except KeyError:  
    examples_tarfile = None  
409    
410  try:  ######## boost (required)
    guide_pdf = env.File(env['guide_pdf'])  
 except KeyError:  
    guide_pdf = None  
411    
412  try:  boost_inc_path,boost_lib_path=findLibWithHeader(env, env['boost_libs'], 'boost/python.hpp', env['boost_prefix'], lang='c++')
413     guide_html_index = env.File('index.htm',env['guide_html'])  if sysheaderopt == '':
414  except KeyError:      env.AppendUnique(CPPPATH = [boost_inc_path])
415     guide_html_index = None  else:
416        # This is required because we can't -isystem /usr/include since it breaks
417        # std includes
418        if os.path.normpath(boost_inc_path) == '/usr/include':
419            conf.env.Append(CCFLAGS=[sysheaderopt, os.path.join(boost_inc_path,'boost')])
420        else:
421            env.Append(CCFLAGS=[sysheaderopt, boost_inc_path])
422    
423  try:  env.AppendUnique(LIBPATH = [boost_lib_path])
424     api_epydoc = env.Dir(env['api_epydoc'])  env.AppendUnique(LIBS = env['boost_libs'])
425  except KeyError:  env.PrependENVPath(LD_LIBRARY_PATH_KEY, boost_lib_path)
    api_epydoc = None  
426    
427  try:  ######## numpy (required)
    api_doxygen = env.Dir(env['api_doxygen'])  
 except KeyError:  
    api_doxygen = None  
428    
429  try:  try:
430     svn_pipe = os.popen("svn info | grep '^Revision'")      from numpy import identity
431     rev = svn_pipe.readlines()  except ImportError:
432     svn_pipe.close()      print("Cannot import numpy, you need to set your PYTHONPATH and probably %s"%LD_LIBRARY_PATH_KEY)
433     svn_version = re.sub("[^0-9]", "", rev[0])      Exit(1)
 except:  
    svn_version = "0"  
 env.Append(CPPDEFINES = "SVN_VERSION="+svn_version)  
434    
435  # Python install - esys __init__.py  ######## VTK (optional)
 init_target = env.Command(pyinstall+'/__init__.py', None, Touch('$TARGET'))  
436    
437  # FIXME: exinstall and friends related to examples are not working.  if env['pyvisi']:
438  build_target = env.Alias('build',[libinstall,incinstall,pyinstall,init_target])      try:
439            import vtk
440  env.Default(build_target)          env['pyvisi'] = True
441        except ImportError:
442  # Zipgets          print("Cannot import vtk, disabling pyvisi.")
443  env.Alias('release_src',[ src_zipfile, src_tarfile ])          env['pyvisi'] = False
444  env.Alias('release_tests',[ test_zipfile, test_tarfile])  
445  env.Alias('release_examples',[ examples_zipfile, examples_tarfile])  ######## netCDF (optional)
446  env.Alias('examples_zipfile',examples_zipfile)  
447  env.Alias('examples_tarfile',examples_tarfile)  netcdf_inc_path=''
448  env.Alias('api_epydoc',api_epydoc)  netcdf_lib_path=''
449  env.Alias('api_doxygen',api_doxygen)  if env['netcdf']:
450  env.Alias('guide_html_index',guide_html_index)      netcdf_inc_path,netcdf_lib_path=findLibWithHeader(env, env['netcdf_libs'], 'netcdf.h', env['netcdf_prefix'], lang='c++')
451  env.Alias('guide_pdf', guide_pdf)      env.AppendUnique(CPPPATH = [netcdf_inc_path])
452  env.Alias('docs',[ 'release_examples', 'guide_pdf', api_epydoc, api_doxygen, guide_html_index])      env.AppendUnique(LIBPATH = [netcdf_lib_path])
453  env.Alias('release', ['release_src', 'release_tests', 'docs'])      env.AppendUnique(LIBS = env['netcdf_libs'])
454        env.PrependENVPath(LD_LIBRARY_PATH_KEY, netcdf_lib_path)
455  env.Alias('build_tests',build_target)    # target to build all C++ tests      env.Append(CPPDEFINES = ['USE_NETCDF'])
456  env.Alias('build_py_tests',build_target) # target to build all python tests  
457  env.Alias('build_all_tests', [ 'build_tests', 'build_py_tests' ] ) # target to build all python tests  ######## PAPI (optional)
458  env.Alias('run_tests', 'build_tests')   # target to run all C++ test  
459  env.Alias('py_tests', 'build_py_tests') # taget to run all released python tests  papi_inc_path=''
460  env.Alias('all_tests', ['run_tests', 'py_tests']) # target to run all C++ and released python tests  papi_lib_path=''
461    if env['papi']:
462        papi_inc_path,papi_lib_path=findLibWithHeader(env, env['papi_libs'], 'papi.h', env['papi_prefix'], lang='c')
463  # Allow sconscripts to see the env      env.AppendUnique(CPPPATH = [papi_inc_path])
464  Export(["env", "incinstall", "libinstall", "pyinstall", "exinstall", "dodebug",      env.AppendUnique(LIBPATH = [papi_lib_path])
465          "mkl_libs", "scsl_libs", "umf_libs", "amd_libs", "blas_libs",      env.AppendUnique(LIBS = env['papi_libs'])
466          "netCDF_libs",      env.PrependENVPath(LD_LIBRARY_PATH_KEY, papi_lib_path)
467      "boost_lib", "python_lib", "doxygen_path", "epydoc_path", "papi_libs",      env.Append(CPPDEFINES = ['BLOCKPAPI'])
468          "sys_libs", "test_zipfile", "src_zipfile", "test_tarfile",  
469          "src_tarfile", "examples_tarfile", "examples_zipfile",  ######## MKL (optional)
470          "guide_pdf", "guide_html_index", "api_epydoc", "api_doxygen", "useMPI"  
471          ])  mkl_inc_path=''
472    mkl_lib_path=''
473  # End initialisation section  if env['mkl']:
474  # Begin configuration section      mkl_inc_path,mkl_lib_path=findLibWithHeader(env, env['mkl_libs'], 'mkl_solver.h', env['mkl_prefix'], lang='c')
475  # adds this file and the scons option directore to the source tar      env.AppendUnique(CPPPATH = [mkl_inc_path])
476  release_srcfiles=[env.File('SConstruct'),]+[ env.File(x) for x in glob.glob('scons/*.py') ]      env.AppendUnique(LIBPATH = [mkl_lib_path])
477  release_testfiles=[env.File('README_TESTS'),]      env.AppendUnique(LIBS = env['mkl_libs'])
478  env.Zip(src_zipfile, release_srcfiles)      env.PrependENVPath(LD_LIBRARY_PATH_KEY, mkl_lib_path)
479  env.Zip(test_zipfile, release_testfiles)      env.Append(CPPDEFINES = ['MKL'])
480  try:  
481     env.Tar(src_tarfile, release_srcfiles)  ######## UMFPACK (optional)
482     env.Tar(test_tarfile, release_testfiles)  
483  except AttributeError:  umfpack_inc_path=''
484     pass  umfpack_lib_path=''
485  # Insert new components to be build here  if env['umfpack']:
486  # FIXME: might be nice to replace this verbosity with a list of targets and some      umfpack_inc_path,umfpack_lib_path=findLibWithHeader(env, env['umfpack_libs'], 'umfpack.h', env['umfpack_prefix'], lang='c')
487  # FIXME: nifty python to create the lengthy but very similar env.Sconscript lines      env.AppendUnique(CPPPATH = [umfpack_inc_path])
488  # Third Party libraries      env.AppendUnique(LIBPATH = [umfpack_lib_path])
489  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)      env.AppendUnique(LIBS = env['umfpack_libs'])
490  # C/C++ Libraries      env.PrependENVPath(LD_LIBRARY_PATH_KEY, umfpack_lib_path)
491  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)      env.Append(CPPDEFINES = ['UMFPACK'])
492  # bruce is removed for now as it doesn't really do anything  
493  # env.SConscript(dirs = ['bruce/src'], build_dir='build/$PLATFORM/bruce', duplicate=0)  ######## LAPACK (optional)
494  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  
495  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  if env['lapack']=='mkl' and not env['mkl']:
496  env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)      print("mkl_lapack requires MKL!")
497  env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)      Exit(1)
498  env.SConscript(dirs = ['doc'], build_dir='build/$PLATFORM/doc', duplicate=0)  
499  env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  env['uselapack'] = env['lapack']!='none'
500  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  lapack_inc_path=''
501    lapack_lib_path=''
502  # added by Ben Cumming  if env['uselapack']:
503  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)      header='clapack.h'
504  #env.SConscript(dirs = ['../test'], build_dir='../test/build', duplicate=0)      if env['lapack']=='mkl':
505            env.AppendUnique(CPPDEFINES = ['MKL_LAPACK'])
506            header='mkl_lapack.h'
507        lapack_inc_path,lapack_lib_path=findLibWithHeader(env, env['lapack_libs'], header, env['lapack_prefix'], lang='c')
508        env.AppendUnique(CPPPATH = [lapack_inc_path])
509        env.AppendUnique(LIBPATH = [lapack_lib_path])
510        env.AppendUnique(LIBS = env['lapack_libs'])
511        env.Append(CPPDEFINES = ['USE_LAPACK'])
512    
513    ######## Silo (optional)
514    
515    silo_inc_path=''
516    silo_lib_path=''
517    if env['silo']:
518        silo_inc_path,silo_lib_path=findLibWithHeader(env, env['silo_libs'], 'silo.h', env['silo_prefix'], lang='c')
519        env.AppendUnique(CPPPATH = [silo_inc_path])
520        env.AppendUnique(LIBPATH = [silo_lib_path])
521        # Note that we do not add the libs since they are only needed for the
522        # weipa library and tools.
523        #env.AppendUnique(LIBS = [env['silo_libs']])
524    
525    ######## VisIt (optional)
526    
527    visit_inc_path=''
528    visit_lib_path=''
529    if env['visit']:
530        visit_inc_path,visit_lib_path=findLibWithHeader(env, env['visit_libs'], 'VisItControlInterface_V2.h', env['visit_prefix'], lang='c')
531        env.AppendUnique(CPPPATH = [visit_inc_path])
532        env.AppendUnique(LIBPATH = [visit_lib_path])
533    
534    ######## MPI (optional)
535    
536    env['usempi'] = env['mpi']!='none'
537    mpi_inc_path=''
538    mpi_lib_path=''
539    if env['usempi']:
540        mpi_inc_path,mpi_lib_path=findLibWithHeader(env, env['mpi_libs'], 'mpi.h', env['mpi_prefix'], lang='c')
541        env.AppendUnique(CPPPATH = [mpi_inc_path])
542        env.AppendUnique(LIBPATH = [mpi_lib_path])
543        env.AppendUnique(LIBS = env['mpi_libs'])
544        env.PrependENVPath(LD_LIBRARY_PATH_KEY, mpi_lib_path)
545        env.Append(CPPDEFINES = ['ESYS_MPI', 'MPI_NO_CPPBIND', 'MPICH_IGNORE_CXX_SEEK'])
546        # NetCDF 4.1 defines MPI_Comm et al. if MPI_INCLUDED is not defined!
547        # On the other hand MPT and OpenMPI don't define the latter so we have to
548        # do that here
549        if env['netcdf'] and env['mpi'] in ['MPT','OPENMPI']:
550            env.Append(CPPDEFINES = ['MPI_INCLUDED'])
551    
552    ######## ParMETIS (optional)
553    
554    if not env['usempi']: env['parmetis'] = False
555    
556    parmetis_inc_path=''
557    parmetis_lib_path=''
558    if env['parmetis']:
559        parmetis_inc_path,parmetis_lib_path=findLibWithHeader(env, env['parmetis_libs'], 'parmetis.h', env['parmetis_prefix'], lang='c')
560        env.AppendUnique(CPPPATH = [parmetis_inc_path])
561        env.AppendUnique(LIBPATH = [parmetis_lib_path])
562        env.AppendUnique(LIBS = env['parmetis_libs'])
563        env.PrependENVPath(LD_LIBRARY_PATH_KEY, parmetis_lib_path)
564        env.Append(CPPDEFINES = ['USE_PARMETIS'])
565    
566    ######################## Summarize our environment ###########################
567    
568    # keep some of our install paths first in the list for the unit tests
569    env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
570    env.PrependENVPath('PYTHONPATH', prefix)
571    env['ENV']['ESCRIPT_ROOT'] = prefix
572    
573    if not env['verbose']:
574        env['CCCOMSTR'] = "Compiling $TARGET"
575        env['CXXCOMSTR'] = "Compiling $TARGET"
576        env['SHCCCOMSTR'] = "Compiling $TARGET"
577        env['SHCXXCOMSTR'] = "Compiling $TARGET"
578        env['ARCOMSTR'] = "Linking $TARGET"
579        env['LINKCOMSTR'] = "Linking $TARGET"
580        env['SHLINKCOMSTR'] = "Linking $TARGET"
581        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
582        env['BIBTEXCOMSTR'] = "Generating bibliography $TARGET"
583        env['MAKEINDEXCOMSTR'] = "Generating index $TARGET"
584        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
585        #Progress(['Checking -\r', 'Checking \\\r', 'Checking |\r', 'Checking /\r'], interval=17)
586    
587    print("")
588    print("*** Config Summary (see config.log and lib/buildvars for details) ***")
589    print("Escript/Finley revision %s"%global_revision)
590    print("  Install prefix:  %s"%env['prefix'])
591    print("          Python:  %s"%sysconfig.PREFIX)
592    print("           boost:  %s"%env['boost_prefix'])
593    print("           numpy:  YES")
594    if env['usempi']:
595        print("             MPI:  YES (flavour: %s)"%env['mpi'])
596    else:
597        print("             MPI:  DISABLED")
598    if env['uselapack']:
599        print("          LAPACK:  YES (flavour: %s)"%env['lapack'])
600    else:
601        print("          LAPACK:  DISABLED")
602    d_list=[]
603    e_list=[]
604    for i in 'debug','openmp','netcdf','parmetis','papi','mkl','umfpack','silo','visit','pyvisi':
605        if env[i]: e_list.append(i)
606        else: d_list.append(i)
607    for i in e_list:
608        print("%16s:  YES"%i)
609    for i in d_list:
610        print("%16s:  DISABLED"%i)
611    if ((fatalwarning != '') and (env['werror'])):
612        print("  Treating warnings as errors")
613    else:
614        print("  NOT treating warnings as errors")
615    print("")
616    
617    ####################### Configure the subdirectories #########################
618    
619    from grouptest import *
620    
621    TestGroups=[]
622    
623    # keep an environment without warnings-as-errors
624    dodgy_env=env.Clone()
625    
626    # now add warnings-as-errors flags. This needs to be done after configuration
627    # because the scons test files have warnings in them
628    if ((fatalwarning != '') and (env['werror'])):
629        env.Append(CCFLAGS = fatalwarning)
630    
631    Export(
632      ['env',
633       'dodgy_env',
634       'IS_WINDOWS',
635       'TestGroups'
636      ]
637    )
638    
639    env.SConscript(dirs = ['tools/CppUnitTest/src'], variant_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
640    env.SConscript(dirs = ['tools/escriptconvert'], variant_dir='build/$PLATFORM/tools/escriptconvert', duplicate=0)
641    env.SConscript(dirs = ['paso/src'], variant_dir='build/$PLATFORM/paso', duplicate=0)
642    env.SConscript(dirs = ['weipa/src'], variant_dir='build/$PLATFORM/weipa', duplicate=0)
643    env.SConscript(dirs = ['escript/src'], variant_dir='build/$PLATFORM/escript', duplicate=0)
644    env.SConscript(dirs = ['esysUtils/src'], variant_dir='build/$PLATFORM/esysUtils', duplicate=0)
645    env.SConscript(dirs = ['dudley/src'], variant_dir='build/$PLATFORM/dudley', duplicate=0)
646    env.SConscript(dirs = ['finley/src'], variant_dir='build/$PLATFORM/finley', duplicate=0)
647    env.SConscript(dirs = ['modellib/py_src'], variant_dir='build/$PLATFORM/modellib', duplicate=0)
648    env.SConscript(dirs = ['doc'], variant_dir='build/$PLATFORM/doc', duplicate=0)
649    env.SConscript(dirs = ['pyvisi/py_src'], variant_dir='build/$PLATFORM/pyvisi', duplicate=0)
650    env.SConscript(dirs = ['pycad/py_src'], variant_dir='build/$PLATFORM/pycad', duplicate=0)
651    env.SConscript(dirs = ['pythonMPI/src'], variant_dir='build/$PLATFORM/pythonMPI', duplicate=0)
652    env.SConscript(dirs = ['paso/profiling'], variant_dir='build/$PLATFORM/paso/profiling', duplicate=0)
653    
654    ######################## Populate the buildvars file #########################
655    
656    # remove obsolete file
657    if not env['usempi']:
658        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPI')))
659        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPIredirect')))
660    
661    # Try to extract the boost version from version.hpp
662    boosthpp=open(os.path.join(boost_inc_path, 'boost', 'version.hpp'))
663    boostversion='unknown'
664    try:
665        for line in boosthpp:
666            ver=re.match(r'#define BOOST_VERSION (\d+)',line)
667            if ver:
668                boostversion=ver.group(1)
669    except StopIteration:
670        pass
671    boosthpp.close()
672    
673    buildvars=open(os.path.join(env['libinstall'], 'buildvars'), 'w')
674    buildvars.write("svn_revision="+str(global_revision)+"\n")
675    buildvars.write("prefix="+prefix+"\n")
676    buildvars.write("cc="+env['CC']+"\n")
677    buildvars.write("cxx="+env['CXX']+"\n")
678    buildvars.write("python="+sys.executable+"\n")
679    buildvars.write("python_version="+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+"\n")
680    buildvars.write("boost_inc_path="+boost_inc_path+"\n")
681    buildvars.write("boost_lib_path="+boost_lib_path+"\n")
682    buildvars.write("boost_version="+boostversion+"\n")
683    buildvars.write("debug=%d\n"%int(env['debug']))
684    buildvars.write("openmp=%d\n"%int(env['openmp']))
685    buildvars.write("mpi=%s\n"%env['mpi'])
686    buildvars.write("mpi_inc_path=%s\n"%mpi_inc_path)
687    buildvars.write("mpi_lib_path=%s\n"%mpi_lib_path)
688    buildvars.write("lapack=%s\n"%env['lapack'])
689    buildvars.write("pyvisi=%d\n"%env['pyvisi'])
690    for i in 'netcdf','parmetis','papi','mkl','umfpack','silo','visit':
691        buildvars.write("%s=%d\n"%(i, int(env[i])))
692        if env[i]:
693            buildvars.write("%s_inc_path=%s\n"%(i, eval(i+'_inc_path')))
694            buildvars.write("%s_lib_path=%s\n"%(i, eval(i+'_lib_path')))
695    buildvars.close()
696    
697    ################### Targets to build and install libraries ###################
698    
699    target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))
700    env.Alias('target_init', [target_init])
701    
702    # The headers have to be installed prior to build in order to satisfy
703    # #include <paso/Common.h>
704    env.Alias('build_esysUtils', ['install_esysUtils_headers', 'build_esysUtils_lib'])
705    env.Alias('install_esysUtils', ['build_esysUtils', 'install_esysUtils_lib'])
706    
707    env.Alias('build_paso', ['install_paso_headers', 'build_paso_lib'])
708    env.Alias('install_paso', ['build_paso', 'install_paso_lib'])
709    
710    env.Alias('build_escript', ['install_escript_headers', 'build_escript_lib', 'build_escriptcpp_lib'])
711    env.Alias('install_escript', ['build_escript', 'install_escript_lib', 'install_escriptcpp_lib', 'install_escript_py'])
712    
713    env.Alias('build_dudley', ['install_dudley_headers', 'build_dudley_lib', 'build_dudleycpp_lib'])
714    env.Alias('install_dudley', ['build_dudley', 'install_dudley_lib', 'install_dudleycpp_lib', 'install_dudley_py'])
715    
716    env.Alias('build_finley', ['install_finley_headers', 'build_finley_lib', 'build_finleycpp_lib'])
717    env.Alias('install_finley', ['build_finley', 'install_finley_lib', 'install_finleycpp_lib', 'install_finley_py'])
718    
719    env.Alias('build_weipa', ['install_weipa_headers', 'build_weipa_lib', 'build_weipacpp_lib'])
720    env.Alias('install_weipa', ['build_weipa', 'install_weipa_lib', 'install_weipacpp_lib', 'install_weipa_py'])
721    
722    env.Alias('build_escriptreader', ['install_weipa_headers', 'build_escriptreader_lib'])
723    env.Alias('install_escriptreader', ['build_escriptreader', 'install_escriptreader_lib'])
724    
725    # Now gather all the above into some easy targets: build_all and install_all
726    build_all_list = []
727    build_all_list += ['build_esysUtils']
728    build_all_list += ['build_paso']
729    build_all_list += ['build_escript']
730    build_all_list += ['build_dudley']
731    build_all_list += ['build_finley']
732    build_all_list += ['build_weipa']
733    if not IS_WINDOWS: build_all_list += ['build_escriptreader']
734    if env['usempi']:   build_all_list += ['build_pythonMPI']
735    build_all_list += ['build_escriptconvert']
736    env.Alias('build_all', build_all_list)
737    
738    install_all_list = []
739    install_all_list += ['target_init']
740    install_all_list += ['install_esysUtils']
741    install_all_list += ['install_paso']
742    install_all_list += ['install_escript']
743    install_all_list += ['install_dudley']
744    install_all_list += ['install_finley']
745    install_all_list += ['install_weipa']
746    if not IS_WINDOWS: install_all_list += ['install_escriptreader']
747    install_all_list += ['install_pyvisi_py']
748    install_all_list += ['install_modellib_py']
749    install_all_list += ['install_pycad_py']
750    if env['usempi']:   install_all_list += ['install_pythonMPI']
751    install_all_list += ['install_escriptconvert']
752    env.Alias('install_all', install_all_list)
753    
754    # Default target is install
755    env.Default('install_all')
756    
757    ################## Targets to build and run the test suite ###################
758    
759    env.Alias('build_cppunittest', ['install_cppunittest_headers', 'build_cppunittest_lib'])
760    env.Alias('install_cppunittest', ['build_cppunittest', 'install_cppunittest_lib'])
761    env.Alias('run_tests', ['install_all', 'install_cppunittest_lib'])
762    env.Alias('all_tests', ['install_all', 'install_cppunittest_lib', 'run_tests', 'py_tests'])
763    env.Alias('build_full',['install_all','build_tests','build_py_tests'])
764    env.Alias('build_PasoTests','build/$PLATFORM/paso/profiling/PasoTests')
765    
766    ##################### Targets to build the documentation #####################
767    
768    env.Alias('api_epydoc','install_all')
769    env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'install_pdf', 'cookbook_pdf'])
770    env.Alias('release_prep', ['docs', 'install_all'])
771    
772  syslib_install_target = env.installDirectory(sys_libinstall,libinstall)  if not IS_WINDOWS:
773  syspy_install_target = env.installDirectory(sys_pyinstall,pyinstall,recursive=True)      try:
774            utest=open('utest.sh','w')
775            utest.write(GroupTest.makeHeader(env['PLATFORM']))
776            for tests in TestGroups:
777                utest.write(tests.makeString())
778            utest.close()
779            Execute(Chmod('utest.sh', 0755))
780            print("Generated utest.sh.")
781        except IOError:
782            print("Error attempting to write unittests file.")
783            Exit(1)
784    
785        # Make sure that the escript wrapper is in place
786        if not os.path.isfile(os.path.join(env['bininstall'], 'run-escript')):
787            print("Copying escript wrapper.")
788            Execute(Copy(os.path.join(env['bininstall'],'run-escript'), 'bin/run-escript'))
789    
 install_target = env.Alias("install", env.Flatten([syslib_install_target, syspy_install_target]) )  

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