| 1 |
|
| 2 |
/******************************************************* |
| 3 |
* |
| 4 |
* Copyright (c) 2003-2008 by University of Queensland |
| 5 |
* Earth Systems Science Computational Center (ESSCC) |
| 6 |
* http://www.uq.edu.au/esscc |
| 7 |
* |
| 8 |
* Primary Business: Queensland, Australia |
| 9 |
* Licensed under the Open Software License version 3.0 |
| 10 |
* http://www.opensource.org/licenses/osl-3.0.php |
| 11 |
* |
| 12 |
*******************************************************/ |
| 13 |
|
| 14 |
|
| 15 |
#include "Data.h" |
| 16 |
#include "FunctionSpace.h" |
| 17 |
#include "FunctionSpaceFactory.h" |
| 18 |
#include "DataFactory.h" |
| 19 |
#include "AbstractContinuousDomain.h" |
| 20 |
#include "AbstractDomain.h" |
| 21 |
#include "Utils.h" |
| 22 |
#include "AbstractSystemMatrix.h" |
| 23 |
#include "AbstractTransportProblem.h" |
| 24 |
#include "DataVector.h" |
| 25 |
#include "paso/Paso_MPI.h" |
| 26 |
|
| 27 |
|
| 28 |
extern "C" { |
| 29 |
#include "escript/blocktimer.h" |
| 30 |
} |
| 31 |
|
| 32 |
#include "esysUtils/esysExceptionTranslator.h" |
| 33 |
|
| 34 |
#include <boost/python.hpp> |
| 35 |
#include <boost/python/module.hpp> |
| 36 |
#include <boost/python/def.hpp> |
| 37 |
#include <boost/python/object.hpp> |
| 38 |
#include <boost/python/tuple.hpp> |
| 39 |
#include <boost/python/numeric.hpp> |
| 40 |
#include <boost/smart_ptr.hpp> |
| 41 |
|
| 42 |
using namespace boost::python; |
| 43 |
|
| 44 |
/*! \mainpage Esys Documentation |
| 45 |
* |
| 46 |
* \version 1.0.0 |
| 47 |
* |
| 48 |
* - \ref escript |
| 49 |
* |
| 50 |
* - \ref esys_exception "Esys Exception" |
| 51 |
* |
| 52 |
* - \ref finley |
| 53 |
* |
| 54 |
* - <a href=http://iservo.edu.au/esys/epydoc/index.html>Python module documentation (epydoc generated)</a> |
| 55 |
* |
| 56 |
*/ |
| 57 |
|
| 58 |
/*! \page escript Escript |
| 59 |
* Escript is the python module that contains the interfaces |
| 60 |
* to the C++ side of escript. |
| 61 |
* |
| 62 |
* \version 1.0.0 |
| 63 |
* |
| 64 |
* \section class_desc Class Description: |
| 65 |
* Data |
| 66 |
* |
| 67 |
* \section class_limits Class Limitations: |
| 68 |
* None |
| 69 |
* |
| 70 |
* \section class_conds Class Conditions of Use: |
| 71 |
* None |
| 72 |
* |
| 73 |
* \section class_throws Throws: |
| 74 |
* None |
| 75 |
* |
| 76 |
*/ |
| 77 |
|
| 78 |
BOOST_PYTHON_MODULE(escriptcpp) |
| 79 |
{ |
| 80 |
def("setNumberOfThreads",escript::setNumberOfThreads); |
| 81 |
def("getNumberOfThreads",escript::getNumberOfThreads); |
| 82 |
def("releaseUnusedMemory",escript::releaseUnusedMemory); |
| 83 |
def("blocktimer_initialize",blocktimer_initialize); |
| 84 |
def("blocktimer_reportSortByName",blocktimer_reportSortByName); |
| 85 |
def("blocktimer_reportSortByTime",blocktimer_reportSortByTime); |
| 86 |
def("blocktimer_increment",blocktimer_increment); |
| 87 |
def("blocktimer_time",blocktimer_time); |
| 88 |
def("getVersion",escript::getSvnVersion); |
| 89 |
def("printParallelThreadCounts",escript::printParallelThreadCnt); |
| 90 |
def("getMPISizeWorld",escript::getMPISizeWorld); |
| 91 |
def("getMPIRankWorld",escript::getMPIRankWorld); |
| 92 |
|
| 93 |
|
| 94 |
// |
| 95 |
// Interface for AbstractDomain |
| 96 |
// |
| 97 |
class_<escript::AbstractDomain, escript::Domain_ptr>("Domain",no_init) |
| 98 |
.def("setTagMap",&escript::AbstractDomain::setTagMap) |
| 99 |
.def("getTag",&escript::AbstractDomain::getTag) |
| 100 |
.def("isValidTagName",&escript::AbstractDomain::isValidTagName) |
| 101 |
.def("showTagNames",&escript::AbstractDomain::showTagNames) |
| 102 |
.def("getX",&escript::AbstractDomain::getX) |
| 103 |
.def("getDim",&escript::AbstractDomain::getDim) |
| 104 |
.def("getNormal",&escript::AbstractDomain::getNormal) |
| 105 |
.def("getSize",&escript::AbstractDomain::getSize) |
| 106 |
.def("saveVTK",&escript::AbstractDomain::saveVTK) |
| 107 |
.def("saveDX",&escript::AbstractDomain::saveDX) |
| 108 |
.def("getMPISize",&escript::AbstractDomain::getMPISize) |
| 109 |
.def("getMPIRank",&escript::AbstractDomain::getMPIRank) |
| 110 |
|
| 111 |
.def(self == self) |
| 112 |
.def(self != self); |
| 113 |
|
| 114 |
// |
| 115 |
// Interface for AbstractContinuousDomain |
| 116 |
// |
| 117 |
class_<escript::AbstractContinuousDomain, bases<escript::AbstractDomain> >("ContinuousDomain",no_init) |
| 118 |
.def("getSystemMatrixTypeId",&escript::AbstractContinuousDomain::getSystemMatrixTypeId); |
| 119 |
|
| 120 |
// |
| 121 |
// Interface for FunctionSpace |
| 122 |
// |
| 123 |
class_<escript::FunctionSpace> fs_definer("FunctionSpace",init<>()); |
| 124 |
fs_definer.def("getDim",&escript::FunctionSpace::getDim); |
| 125 |
// fs_definer.def("getDomain",&escript::FunctionSpace::getDomain, |
| 126 |
// return_internal_reference<>()); |
| 127 |
fs_definer.def("getDomain",&escript::FunctionSpace::getDomainPython); |
| 128 |
fs_definer.def("getX",&escript::FunctionSpace::getX); |
| 129 |
fs_definer.def("getNormal",&escript::FunctionSpace::getNormal); |
| 130 |
fs_definer.def("getSize",&escript::FunctionSpace::getSize); |
| 131 |
fs_definer.def("setTags",&escript::FunctionSpace::setTags); |
| 132 |
fs_definer.def("getTagFromDataPointNo", |
| 133 |
&escript::FunctionSpace::getTagFromDataPointNo); |
| 134 |
fs_definer.def("getReferenceIDFromDataPointNo", &escript::FunctionSpace::getReferenceIDFromDataPointNo); |
| 135 |
fs_definer.def("getListOfTags",&escript::FunctionSpace::getListOfTags); |
| 136 |
fs_definer.def("__str__", &escript::FunctionSpace::toString); |
| 137 |
fs_definer.def(self == self); |
| 138 |
fs_definer.def(self != self); |
| 139 |
// |
| 140 |
// Interface for Data |
| 141 |
// |
| 142 |
class_<escript::Data>("Data","TEST DOCUMENTATION",init<>() ) |
| 143 |
// various constructors for Data objects |
| 144 |
.def(init<const numeric::array&, optional<const escript::FunctionSpace&, bool> >(args("value","what","expand"))) |
| 145 |
.def(init<const object&, optional<const escript::FunctionSpace&, bool> >(args("value","what","expand"))) |
| 146 |
.def(init<const double, const tuple&, optional<const escript::FunctionSpace&, bool> >(args("value","shape","what","expand"))) |
| 147 |
.def(init<const escript::Data&, const escript::FunctionSpace&>(args("value","what"))) |
| 148 |
.def(init<const escript::Data&>()) |
| 149 |
// Note for Lutz, Need to specify the call policy in order to return a |
| 150 |
// reference. In this case return_internal_reference. |
| 151 |
.def("__str__",&escript::Data::toString) |
| 152 |
// .def("getDomain",&escript::Data::getDomain,return_internal_reference<>()) |
| 153 |
.def("getDomain",&escript::Data::getDomainPython) |
| 154 |
.def("getFunctionSpace",&escript::Data::getFunctionSpace,return_value_policy<copy_const_reference>()) |
| 155 |
.def("isEmpty",&escript::Data::isEmpty) |
| 156 |
.def("isProtected",&escript::Data::isProtected) |
| 157 |
.def("setProtection",&escript::Data::setProtection) |
| 158 |
.def("getShape",&escript::Data::getShapeTuple) |
| 159 |
.def("getRank",&escript::Data::getDataPointRank) |
| 160 |
.def("dump",&escript::Data::dump) |
| 161 |
.def("copyWithMask",&escript::Data::copyWithMask) |
| 162 |
.def("setTaggedValue",&escript::Data::setTaggedValue) |
| 163 |
.def("setTaggedValue",&escript::Data::setTaggedValueByName) |
| 164 |
.def("getNumberOfDataPoints",&escript::Data::getNumDataPoints) |
| 165 |
.def("isExpanded",&escript::Data::isExpanded) |
| 166 |
.def("isTagged",&escript::Data::isTagged) |
| 167 |
.def("isConstant",&escript::Data::isConstant) |
| 168 |
.def("isLazy",&escript::Data::isLazy) |
| 169 |
.def("isReady",&escript::Data::isReady) |
| 170 |
.def("expand",&escript::Data::expand) |
| 171 |
.def("tag",&escript::Data::tag) |
| 172 |
.def("copy",&escript::Data::copy) |
| 173 |
.def("copy",&escript::Data::copySelf,return_value_policy<manage_new_object>()) |
| 174 |
.def("delay",&escript::Data::delay) |
| 175 |
.def("setValueOfDataPoint",&escript::Data::setValueOfDataPointToPyObject) |
| 176 |
.def("setValueOfDataPoint",&escript::Data::setValueOfDataPointToArray) |
| 177 |
.def("setValueOfDataPoint",&escript::Data::setValueOfDataPoint) |
| 178 |
.def("getValueOfDataPoint",&escript::Data::getValueOfDataPoint) |
| 179 |
.def("getValueOfGlobalDataPoint",&escript::Data::getValueOfGlobalDataPoint) |
| 180 |
.def("setToZero",&escript::Data::setToZero) |
| 181 |
.def("interpolate",&escript::Data::interpolate) |
| 182 |
.def("minGlobalDataPoint",&escript::Data::minGlobalDataPoint) |
| 183 |
.def("saveDX",&escript::Data::saveDX) |
| 184 |
.def("saveVTK",&escript::Data::saveVTK) |
| 185 |
.def("getTagNumber",&escript::Data::getTagNumber) |
| 186 |
// Unary functions for Data |
| 187 |
.def("_interpolate",&escript::Data::interpolate) |
| 188 |
.def("_grad",&escript::Data::gradOn) |
| 189 |
.def("_grad",&escript::Data::grad) |
| 190 |
.def("_transpose",&escript::Data::transpose) |
| 191 |
.def("_trace",&escript::Data::trace) |
| 192 |
.def("_maxval",&escript::Data::maxval) |
| 193 |
.def("_minval",&escript::Data::minval) |
| 194 |
.def("_wherePositive",&escript::Data::wherePositive) |
| 195 |
.def("_whereNegative",&escript::Data::whereNegative) |
| 196 |
.def("_whereNonNegative",&escript::Data::whereNonNegative) |
| 197 |
.def("_whereNonPositive",&escript::Data::whereNonPositive) |
| 198 |
.def("_whereZero",&escript::Data::whereZero,(arg("tol")=0.0)) |
| 199 |
.def("_whereNonZero",&escript::Data::whereNonZero,(arg("tol")=0.0)) |
| 200 |
.def("_erf",&escript::Data::erf) |
| 201 |
.def("_sin",&escript::Data::sin) |
| 202 |
.def("_cos",&escript::Data::cos) |
| 203 |
.def("_tan",&escript::Data::tan) |
| 204 |
.def("_asin",&escript::Data::asin) |
| 205 |
.def("_acos",&escript::Data::acos) |
| 206 |
.def("_atan",&escript::Data::atan) |
| 207 |
.def("_sinh",&escript::Data::sinh) |
| 208 |
.def("_cosh",&escript::Data::cosh) |
| 209 |
.def("_tanh",&escript::Data::tanh) |
| 210 |
.def("_asinh",&escript::Data::asinh) |
| 211 |
.def("_acosh",&escript::Data::acosh) |
| 212 |
.def("_atanh",&escript::Data::atanh) |
| 213 |
.def("_exp",&escript::Data::exp) |
| 214 |
.def("_sqrt",&escript::Data::sqrt) |
| 215 |
.def("_log10",&escript::Data::log10) |
| 216 |
.def("_log",&escript::Data::log) |
| 217 |
.def("_sign",&escript::Data::sign) |
| 218 |
.def("_symmetric",&escript::Data::symmetric) |
| 219 |
.def("_nonsymmetric",&escript::Data::nonsymmetric) |
| 220 |
.def("_trace",&escript::Data::trace) |
| 221 |
.def("_swap_axes",&escript::Data::swapaxes) |
| 222 |
.def("_eigenvalues",&escript::Data::eigenvalues) |
| 223 |
.def("_eigenvalues_and_eigenvectors",&escript::Data::eigenvalues_and_eigenvectors,(arg("tol")=1.e-13)) |
| 224 |
// functions returning a single real number: |
| 225 |
.def("_Lsup",&escript::Data::Lsup) |
| 226 |
.def("_sup",&escript::Data::sup) |
| 227 |
.def("_inf",&escript::Data::inf) |
| 228 |
.def("_integrate",&escript::Data::integrate) |
| 229 |
|
| 230 |
// following implements the python abs operator |
| 231 |
.def("__abs__",&escript::Data::abs) |
| 232 |
// following implements the python "-" negation operator |
| 233 |
.def("__neg__",&escript::Data::neg) |
| 234 |
// following implements the python "+" identity operator |
| 235 |
.def("__pos__",&escript::Data::pos) |
| 236 |
// following two functions implement the python [] operator |
| 237 |
.def("__getitem__",&escript::Data::getItem) |
| 238 |
.def("__setitem__",&escript::Data::setItemO) |
| 239 |
.def("__setitem__",&escript::Data::setItemD) |
| 240 |
// following two functions implement the python ** operator |
| 241 |
.def("__pow__",&escript::Data::powO) |
| 242 |
.def("__pow__",&escript::Data::powD) |
| 243 |
.def("__rpow__",&escript::Data::rpowO) |
| 244 |
// NOTE:: The order of these declarations is important. Anything |
| 245 |
// declared before the generic declaration isn't found so the generic |
| 246 |
// version will be called. |
| 247 |
.def(self + other<object>()) |
| 248 |
.def(other<object>() + self) |
| 249 |
.def(self + self) |
| 250 |
.def(self += other<object>()) |
| 251 |
.def(self += self) |
| 252 |
|
| 253 |
.def(self - other<object>()) |
| 254 |
.def(other<object>() - self) |
| 255 |
.def(self - self) |
| 256 |
.def(self -= other<object>()) |
| 257 |
.def(self -= self) |
| 258 |
|
| 259 |
.def(self * other<object>()) |
| 260 |
.def(other<object>() * self) |
| 261 |
.def(self * self) |
| 262 |
.def(self *= other<object>()) |
| 263 |
.def(self *= self) |
| 264 |
|
| 265 |
.def(self / other<object>()) |
| 266 |
.def(other<object>() / self) |
| 267 |
.def(self / self) |
| 268 |
.def(self /= other<object>()) |
| 269 |
.def(self /= self) |
| 270 |
// Need scope resolution due to a bug either in the compiler or |
| 271 |
// the boost code. This calls operator << for Data. |
| 272 |
.def(self_ns::str(self)); |
| 273 |
|
| 274 |
// |
| 275 |
// Factory methods for function space |
| 276 |
// |
| 277 |
def("ContinuousFunction",escript::continuousFunction); |
| 278 |
def("ReducedContinuousFunction",escript::reducedContinuousFunction); |
| 279 |
def("Function",escript::function); |
| 280 |
def("ReducedFunction",escript::reducedFunction); |
| 281 |
def("FunctionOnBoundary",escript::functionOnBoundary); |
| 282 |
def("ReducedFunctionOnBoundary",escript::reducedFunctionOnBoundary); |
| 283 |
def("FunctionOnContactZero",escript::functionOnContactZero); |
| 284 |
def("ReducedFunctionOnContactZero",escript::reducedFunctionOnContactZero); |
| 285 |
def("FunctionOnContactOne",escript::functionOnContactOne); |
| 286 |
def("ReducedFunctionOnContactOne",escript::reducedFunctionOnContactOne); |
| 287 |
def("Solution",escript::solution); |
| 288 |
def("ReducedSolution",escript::reducedSolution); |
| 289 |
def("DiracDeltaFunction",escript::diracDeltaFunction); |
| 290 |
|
| 291 |
// |
| 292 |
// Factory methods for Data |
| 293 |
// |
| 294 |
def("load",escript::load); |
| 295 |
def("loadIsConfigured",escript::loadConfigured); |
| 296 |
def("Scalar",escript::Scalar, |
| 297 |
(arg("value")=0.0, |
| 298 |
arg("what")=escript::FunctionSpace(), |
| 299 |
arg("expanded")=false)); |
| 300 |
def("Vector",escript::Vector, |
| 301 |
(arg("value")=0.0, |
| 302 |
arg("what")=escript::FunctionSpace(), |
| 303 |
arg("expanded")=false)); |
| 304 |
def("Tensor",escript::Tensor, |
| 305 |
(arg("value")=0.0, |
| 306 |
arg("what")=escript::FunctionSpace(), |
| 307 |
arg("expanded")=false)); |
| 308 |
def("Tensor3",escript::Tensor3, |
| 309 |
(arg("value")=0.0, |
| 310 |
arg("what")=escript::FunctionSpace(), |
| 311 |
arg("expanded")=false)); |
| 312 |
def("Tensor4",escript::Tensor4, |
| 313 |
(arg("value")=0.0, |
| 314 |
arg("what")=escript::FunctionSpace(), |
| 315 |
arg("expanded")=false)); |
| 316 |
|
| 317 |
// |
| 318 |
// Binary operators |
| 319 |
// |
| 320 |
def("C_GeneralTensorProduct",escript::C_GeneralTensorProduct, |
| 321 |
(arg("arg0")=escript::Data(), |
| 322 |
arg("arg1")=escript::Data(), |
| 323 |
arg("axis_offset")=0, |
| 324 |
arg("transpose")=0)); |
| 325 |
|
| 326 |
// |
| 327 |
// Interface for AbstractSystemMatrix |
| 328 |
// |
| 329 |
class_<escript::AbstractSystemMatrix>("Operator",init<>()) |
| 330 |
.def("isEmpty",&escript::AbstractSystemMatrix::isEmpty) |
| 331 |
.def("solve",&escript::AbstractSystemMatrix::solve) |
| 332 |
.def("of",&escript::AbstractSystemMatrix::vectorMultiply) |
| 333 |
.def("saveMM",&escript::AbstractSystemMatrix::saveMM) |
| 334 |
.def("saveHB",&escript::AbstractSystemMatrix::saveHB) |
| 335 |
.def("resetValues",&escript::AbstractSystemMatrix::resetValues) |
| 336 |
.def(self*other<escript::Data>()); |
| 337 |
// |
| 338 |
// Interface for AbstractTransportProblem |
| 339 |
// |
| 340 |
class_<escript::AbstractTransportProblem>("TransportProblem",init<>()) |
| 341 |
.def("isEmpty",&escript::AbstractTransportProblem::isEmpty) |
| 342 |
.def("solve",&escript::AbstractTransportProblem::solve) |
| 343 |
.def("setInitialValue",&escript::AbstractTransportProblem::setInitialValue) |
| 344 |
.def("insertConstraint",&escript::AbstractTransportProblem::insertConstraint) |
| 345 |
.def("reset",&escript::AbstractTransportProblem::resetTransport) |
| 346 |
.def("resetValues",&escript::AbstractTransportProblem::resetTransport) |
| 347 |
.def("getSafeTimeStepSize",&escript::AbstractTransportProblem::getSafeTimeStepSize); |
| 348 |
|
| 349 |
// |
| 350 |
// Register esysExceptionTranslator |
| 351 |
// |
| 352 |
register_exception_translator<esysUtils::EsysException>(&esysUtils::esysExceptionTranslator); |
| 353 |
|
| 354 |
} |
Parent Directory
| 
Revision Log