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Revision 5052 - Directory Listing
Modified Thu Jun 19 22:28:26 2014 UTC (3 years, 5 months ago) by jfenwick
Need somewhere to park my changes


Revision 5014 - Directory Listing
Modified Sun Jun 8 12:05:22 2014 UTC (3 years, 6 months ago) by caltinay
Original Path: trunk/scons
built boost 1.55.0 on savanna which fixes the segfaults we have been seeing
for a long time when using shared_from_this() with the intel compiler.

(While Intel couldn't reproduce, I could on epic, magnus, and raijin w/ system
boost+python. Finally found that using 1.53+ modules on raijin did no longer
exhibit the problem.)



Revision 4963 - Directory Listing
Modified Fri May 23 05:12:40 2014 UTC (3 years, 6 months ago) by jfenwick
Original Path: trunk/scons
Removed JMPI from ScriptMPI.cpp.
Changed options file to build shared libraries.
Fixed error in unit tests



Revision 4962 - Directory Listing
Modified Fri May 23 02:53:00 2014 UTC (3 years, 6 months ago) by jfenwick
Original Path: trunk/scons
Tests for adding dirac points. There are no tests for what dirac points appear on which ranks.

Revision 4917 - Directory Listing
Modified Wed Apr 30 05:58:08 2014 UTC (3 years, 7 months ago) by caltinay
Original Path: trunk/scons
export LD_PRELOAD for tests.
added freebsd 10.0 options file.


Revision 4915 - Directory Listing
Modified Wed Apr 30 05:29:23 2014 UTC (3 years, 7 months ago) by jfenwick
Original Path: trunk/scons
Fixes for macports

Revision 4909 - Directory Listing
Modified Wed Apr 30 01:20:22 2014 UTC (3 years, 7 months ago) by caltinay
Original Path: trunk/scons
Fixed Wunused-functions picked up by g++ 4.9


Revision 4902 - Directory Listing
Modified Tue Apr 29 04:07:28 2014 UTC (3 years, 7 months ago) by jduplessis
Original Path: trunk/scons
add centos 6.5 scons option file.

Revision 4894 - Directory Listing
Modified Mon Apr 28 04:28:28 2014 UTC (3 years, 7 months ago) by sshaw
Original Path: trunk/scons
adding options for fedora 20, only changes boost_python-mt for now

Revision 4877 - Directory Listing
Modified Tue Apr 22 07:24:32 2014 UTC (3 years, 7 months ago) by caltinay
Original Path: trunk/scons
new intel cc,mkl & mpi on savanna.


Revision 4840 - Directory Listing
Modified Tue Apr 8 03:24:47 2014 UTC (3 years, 8 months ago) by jfenwick
Original Path: trunk/scons
scons options for trusty

Revision 4815 - Directory Listing
Modified Fri Mar 28 05:25:56 2014 UTC (3 years, 8 months ago) by sshaw
Original Path: trunk/scons
replacing awful config file debugthing

Revision 4775 - Directory Listing
Modified Wed Mar 19 23:12:53 2014 UTC (3 years, 8 months ago) by caltinay
Original Path: trunk/scons
Moved matrix format exception further up the stack which fixes #109.
Also, removed default defines CORE_ID1 and BLOCKTIMER, added the former to
savanna's options.


Revision 4696 - Directory Listing
Modified Wed Feb 19 07:29:50 2014 UTC (3 years, 9 months ago) by jfenwick
Original Path: trunk/scons
Correcting python libname for sage.
Fixing bug where the number of values in the shape was not considered for buffer and message size.


Revision 4690 - Directory Listing
Modified Wed Feb 19 05:22:16 2014 UTC (3 years, 9 months ago) by sshaw
Original Path: trunk/scons
adjusting porcupine config to use MPI by default

Revision 4687 - Directory Listing
Modified Wed Feb 19 00:03:29 2014 UTC (3 years, 9 months ago) by jfenwick
Original Path: trunk/scons
Remove randomFill python method from ripley domains.
All random data objects (for all domain types) should be generated 
using esys.escript.RandomData()

The only filtered random we have is gaussian on ripley but
it is triggered by passing the tuple as the last arg of RandomData().

While the interface is a bit more complicated (in that you always need
 to pass in shape and functionspace) it does mean we have a 
common interface for all domains. 

Removed randomFill from DataExpanded.
The reasoning behind this is to force domains to call the util function
themselves and enforce whatever consistancy requirements they have.

Added version of blocktools to deal with 2D case in Ripley.
Use blocktools for the 2D transfers [This was cleaner than modifying the
previous implementation to deal with variable shaped points].

Note that under MPI, ripley can not generate random data (even unfiltered)
if any of its per rank dimensions is <4 elements on any side.

Unit tests for these calls are in but some extra checks still needed.




Revision 4657 - Directory Listing
Modified Thu Feb 6 06:12:20 2014 UTC (3 years, 10 months ago) by jfenwick
Original Path: trunk/scons
I changed some files.
Updated copyright notices, added GeoComp.




Revision 4642 - Directory Listing
Modified Fri Jan 31 02:16:45 2014 UTC (3 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Renamed the default options file to make it clear that it was used for g++.
There is now no default mole options file.
This is deliberate. You need to configure your environment based on the compiler you wish to use. (See scripts in /usr/local/env).

If you are doing a lot of building, symlink your chosen file to scons/mole_options.py. DO NOT COMMIT it though.



Revision 4640 - Directory Listing
Modified Fri Jan 31 00:56:51 2014 UTC (3 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Ensure that DYLD_LIBRARY_PATH is passed into scons.
Update mole_options to work with g++
(To get this to work, you will need to set up your env vars).



Revision 4638 - Directory Listing
Modified Thu Jan 30 06:25:10 2014 UTC (3 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Fixes necessary to get a clang/macports build working on 10.9

Revision 4619 - Directory Listing
Modified Thu Jan 16 02:10:26 2014 UTC (3 years, 11 months ago) by caltinay
Original Path: trunk/scons
updated gp py3 options.


Revision 4617 - Directory Listing
Modified Wed Jan 15 03:49:19 2014 UTC (3 years, 11 months ago) by caltinay
Original Path: trunk/scons
new name for boost library on guineapig


Revision 4579 - Directory Listing
Modified Tue Dec 10 04:08:20 2013 UTC (4 years ago) by sshaw
Original Path: trunk/scons
adding porcupine's scons options file

Revision 4576 - Directory Listing
Modified Mon Dec 9 23:35:30 2013 UTC (4 years ago) by sshaw
Original Path: trunk/scons
python3ified things, replaced mixed whitespace and xrange calls

Revision 4567 - Directory Listing
Modified Thu Dec 5 09:00:23 2013 UTC (4 years ago) by jfenwick
Original Path: trunk/scons
Options file for ubuntu 13.10


Revision 4560 - Directory Listing
Modified Wed Dec 4 03:43:57 2013 UTC (4 years ago) by rschaa
Original Path: trunk/scons
Options file for ferret


Revision 4557 - Directory Listing
Modified Tue Dec 3 12:53:38 2013 UTC (4 years ago) by caltinay
Original Path: trunk/scons
Fixed boost/intel issue in dudley and synced options file with module on
savanna.


Revision 4542 - Directory Listing
Modified Thu Nov 28 01:33:22 2013 UTC (4 years ago) by jfenwick
Original Path: trunk/scons
Moving to new icc and associated modules.




Revision 4535 - Directory Listing
Modified Wed Nov 20 06:37:53 2013 UTC (4 years ago) by gross
Original Path: trunk/scons
strong correlation joint inversion fixed.

Revision 4528 - Directory Listing
Modified Sun Sep 29 23:12:19 2013 UTC (4 years, 2 months ago) by caltinay
Original Path: trunk/scons
Added timeStepFormat option to saveESD (mantis 723).


Revision 4523 - Directory Listing
Modified Mon Aug 26 23:04:07 2013 UTC (4 years, 3 months ago) by caltinay
Original Path: trunk/scons
New working raijin options.


Revision 4520 - Directory Listing
Modified Thu Aug 22 06:42:57 2013 UTC (4 years, 3 months ago) by caltinay
Original Path: trunk/scons
Removing spurious usage of C compiler:
-Changed all scons tests to use C++ compiler
-Renamed paso profiling files (unused)
-Updated most options files (removal of options and updated comments)


Revision 4519 - Directory Listing
Modified Mon Aug 19 05:56:22 2013 UTC (4 years, 3 months ago) by caltinay
Original Path: trunk/scons
Initial raijin options file.


Revision 4516 - Directory Listing
Modified Thu Aug 8 05:41:49 2013 UTC (4 years, 4 months ago) by caltinay
Original Path: trunk/scons
Implemented more CF conventions for the netCDF datasource.
Also added a check to LatLonToUTM to pass through coordinates that are already
projected.
Data gridded by GDAL is now understood.


Revision 4511 - Directory Listing
Modified Thu Jul 25 04:51:02 2013 UTC (4 years, 4 months ago) by caltinay
Original Path: trunk/scons
Print a warning on savanna if dev-deps is not loaded when building and add
debug symbols by default.


Revision 4508 - Directory Listing
Modified Wed Jul 24 04:23:22 2013 UTC (4 years, 4 months ago) by jfenwick
Original Path: trunk/scons
Moving to escriptcore

Revision 4491 - Directory Listing
Modified Tue Jul 2 01:10:41 2013 UTC (4 years, 5 months ago) by caltinay
Original Path: trunk/scons
Reintegrating changes from 3.4 branch (with changes).


Revision 4489 - Directory Listing
Modified Fri Jun 28 00:05:31 2013 UTC (4 years, 5 months ago) by caltinay
Original Path: trunk/scons
Moved to update 5 of intel libraries/compiler on savanna.


Revision 4449 - Directory Listing
Modified Thu Jun 13 00:24:00 2013 UTC (4 years, 6 months ago) by jfenwick
Original Path: trunk/scons
Finishing off this end.


Revision 4440 - Directory Listing
Modified Wed Jun 5 05:22:20 2013 UTC (4 years, 6 months ago) by jfenwick
Original Path: trunk/scons
options files changes and install changes

Revision 4439 - Directory Listing
Modified Wed Jun 5 02:09:35 2013 UTC (4 years, 6 months ago) by jfenwick
Original Path: trunk/scons
some work on install doco

Revision 4431 - Directory Listing
Modified Fri May 31 07:09:03 2013 UTC (4 years, 6 months ago) by caltinay
Original Path: trunk/scons
finley ElementFile is now a class...


Revision 4420 - Directory Listing
Modified Mon May 20 07:12:15 2013 UTC (4 years, 6 months ago) by caltinay
Original Path: trunk/scons
Enabled metis on guineapig.


Revision 4419 - Directory Listing
Modified Mon May 20 05:03:35 2013 UTC (4 years, 6 months ago) by caltinay
Original Path: trunk/scons
Fixed a typo.


Revision 4418 - Directory Listing
Modified Mon May 20 04:08:16 2013 UTC (4 years, 6 months ago) by caltinay
Original Path: trunk/scons
Try...


Revision 4406 - Directory Listing
Modified Tue May 14 02:54:09 2013 UTC (4 years, 7 months ago) by caltinay
Original Path: trunk/scons
Removed references to pyvisi which disappeared a few releases ago...


Revision 4396 - Directory Listing
Modified Wed May 8 09:27:10 2013 UTC (4 years, 7 months ago) by jfenwick
Original Path: trunk/scons
fix extraction script to pick up more classes. Stop models from importing escript into its namespace

Revision 4371 - Directory Listing
Modified Fri Apr 19 08:47:57 2013 UTC (4 years, 7 months ago) by jfenwick
Original Path: trunk/scons
As far as I can tell, passes unit tests on freebsd with non-default compiler==gcc46

Revision 4369 - Directory Listing
Modified Fri Apr 19 02:32:34 2013 UTC (4 years, 7 months ago) by jfenwick
Original Path: trunk/scons
fix problems revealed on freebsd

Revision 4362 - Directory Listing
Modified Tue Apr 16 04:37:13 2013 UTC (4 years, 8 months ago) by caltinay
Original Path: trunk/scons
Implemented NumpyData downunder source (w/ tests).
Added check of data dimensionality to domainbuilder since data_dim must equal
domain_dim-1 at the moment.


Revision 4361 - Directory Listing
Modified Mon Apr 15 04:43:19 2013 UTC (4 years, 8 months ago) by jfenwick
Original Path: trunk/scons
beginnings of an option file for macports

Revision 4354 - Directory Listing
Modified Fri Apr 5 03:55:03 2013 UTC (4 years, 8 months ago) by jfenwick
Original Path: trunk/scons
adding option files for distros

Revision 4353 - Directory Listing
Modified Fri Apr 5 00:14:35 2013 UTC (4 years, 8 months ago) by caltinay
Original Path: trunk/scons
For some reason std::isnan<float> is not available on NCI so changed this
to ::isnan. Added options file for NCI vayu.


Revision 4352 - Directory Listing
Modified Thu Apr 4 04:28:57 2013 UTC (4 years, 8 months ago) by jfenwick
Original Path: trunk/scons


Revision 4347 - Directory Listing
Modified Tue Apr 2 04:58:44 2013 UTC (4 years, 8 months ago) by jfenwick
Original Path: trunk/scons
Fixed some const char* conversions


Revision 4346 - Directory Listing
Modified Tue Apr 2 04:46:45 2013 UTC (4 years, 8 months ago) by jfenwick
Original Path: trunk/scons
Bringing the changes from doubleplusgood branch.
Can't merge directly because svn doesn't transfer changes to renamed files (mutter grumble).

Revision 4342 - Directory Listing
Modified Tue Mar 26 02:31:41 2013 UTC (4 years, 8 months ago) by jfenwick
Original Path: trunk/scons
get rid of the escript link that snuck in somehow.   deal with cases where the root of the install is in a path with spaces in it.

Revision 4339 - Directory Listing
Modified Fri Mar 22 02:25:37 2013 UTC (4 years, 8 months ago) by jfenwick
Original Path: trunk/scons
options file for all standalone builds

Revision 4307 - Directory Listing
Modified Mon Mar 11 02:46:17 2013 UTC (4 years, 9 months ago) by azadeh
Original Path: trunk/scons
shake29->weasel


Revision 4299 - Directory Listing
Modified Mon Mar 11 00:40:09 2013 UTC (4 years, 9 months ago) by caltinay
Original Path: trunk/scons
Exit with a warning in example files that require unavailable scipy.
bollide->hamster
added warnings to scons for scipy and gdal


Revision 4249 - Directory Listing
Modified Tue Feb 26 01:01:59 2013 UTC (4 years, 9 months ago) by caltinay
Original Path: trunk/scons
s/shake75/bollide. Made build_full succeed without cppunit.


Revision 4241 - Directory Listing
Modified Fri Feb 22 11:35:11 2013 UTC (4 years, 9 months ago) by jfenwick
Original Path: trunk/scons
Added py3 config

Revision 4240 - Directory Listing
Modified Fri Feb 22 01:51:19 2013 UTC (4 years, 9 months ago) by jfenwick
Original Path: trunk/scons
options file for a clang buildbot

Revision 4234 - Directory Listing
Modified Thu Feb 21 04:00:31 2013 UTC (4 years, 9 months ago) by gross
Original Path: trunk/scons
typo fixed

Revision 4154 - Directory Listing
Modified Tue Jan 22 09:30:23 2013 UTC (4 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Round 1 of copyright fixes

Revision 4127 - Directory Listing
Modified Thu Jan 10 00:46:56 2013 UTC (4 years, 11 months ago) by azadeh
Original Path: trunk/scons
add documentation for gravity.


Revision 4113 - Directory Listing
Modified Fri Dec 14 01:54:53 2012 UTC (5 years ago) by caltinay
Original Path: trunk/scons
shake29 options file.


Revision 4097 - Directory Listing
Modified Fri Dec 7 01:18:35 2012 UTC (5 years ago) by caltinay
Original Path: trunk/scons
Minor edits.


Revision 4090 - Directory Listing
Modified Mon Nov 26 03:51:04 2012 UTC (5 years ago) by caltinay
Original Path: trunk/scons
Savanna tweaks.


Revision 4089 - Directory Listing
Modified Fri Nov 23 04:41:54 2012 UTC (5 years ago) by caltinay
Original Path: trunk/scons
Switch to new toolchain on Savanna.


Revision 4070 - Directory Listing
Modified Tue Nov 13 07:55:22 2012 UTC (5 years, 1 month ago) by jfenwick
Original Path: trunk/scons
File for quantal. Now to work out why on earth quantal manages to make epydoc segfault


Revision 4066 - Directory Listing
Modified Mon Nov 12 06:18:47 2012 UTC (5 years, 1 month ago) by jfenwick
Original Path: trunk/scons
renaming wheezyoptions file

Revision 4064 - Directory Listing
Modified Fri Nov 9 07:25:14 2012 UTC (5 years, 1 month ago) by jfenwick
Original Path: trunk/scons
Tweaks

Revision 4031 - Directory Listing
Modified Wed Oct 24 03:36:37 2012 UTC (5 years, 1 month ago) by caltinay
Original Path: trunk/scons
Added option -x to run xterm to run-escript and replaced a few bashims.


Revision 4018 - Directory Listing
Modified Thu Oct 11 04:43:39 2012 UTC (5 years, 2 months ago) by jfenwick
Original Path: trunk/scons
Used "new" raise syntax in a few places
Fixed some tabbing
Fixed some funnies involving changes to xrange/range
added a quick and nasty __hash__ function to Symbol
   def __hash__(self):
        return id(self)
This does mean that __hash__ and == do not match exactly.   Not sure if that matters for our purposes

Revision 4015 - Directory Listing
Modified Mon Oct 8 01:19:04 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/scons
Updated savanna options file to use latest compiler, mkl


Revision 4006 - Directory Listing
Modified Fri Sep 28 06:16:46 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/scons
Update vm options to use pip-installed numpy.


Revision 3981 - Directory Listing
Modified Fri Sep 21 02:47:54 2012 UTC (5 years, 2 months ago) by jfenwick
Original Path: trunk/scons
First pass of updating copyright notices

Revision 3975 - Directory Listing
Modified Thu Sep 20 01:54:06 2012 UTC (5 years, 2 months ago) by caltinay
Original Path: trunk/scons
Merged symbolic branch into trunk. Curious what daniel and spartacus have to
say...


Revision 3962 - Directory Listing
Modified Tue Sep 11 09:12:07 2012 UTC (5 years, 3 months ago) by jfenwick
Original Path: trunk/scons
Fix in brick for ambiguous typing.

Python work around for unit tests.
Passing cpp tests as well.

omp is disabled due to a weird linking error.


Revision 3961 - Directory Listing
Modified Tue Sep 11 07:21:41 2012 UTC (5 years, 3 months ago) by jfenwick
Original Path: trunk/scons
Options file for mole.
Work around for python compile errors


Revision 3955 - Directory Listing
Modified Tue Sep 4 01:44:41 2012 UTC (5 years, 3 months ago) by caltinay
Original Path: trunk/scons
Added CentOS 6 vm options file.


Revision 3942 - Directory Listing
Modified Fri Jul 27 01:04:48 2012 UTC (5 years, 4 months ago) by jfenwick
Original Path: trunk/scons
Porting changes back from 3.3 release branch


Revision 3911 - Directory Listing
Modified Thu Jun 14 01:01:03 2012 UTC (5 years, 6 months ago) by jfenwick
Original Path: trunk/scons
Copyright changes

Revision 3909 - Directory Listing
Modified Wed Jun 13 07:03:06 2012 UTC (5 years, 6 months ago) by gross
Original Path: trunk/scons
darcy solver removes hydrostatic pressure from problem now

Revision 3892 - Directory Listing
Modified Tue Apr 10 08:57:23 2012 UTC (5 years, 8 months ago) by jfenwick
Original Path: trunk/scons
Merged changes across from the attempt2 branch.
This version builds and passes python2 tests.
It also passes most python3 tests.




Revision 3866 - Directory Listing
Modified Wed Mar 14 02:06:13 2012 UTC (5 years, 9 months ago) by caltinay
Original Path: trunk/scons
Use system silo on guineapig now.


Revision 3865 - Directory Listing
Modified Mon Mar 12 23:49:05 2012 UTC (5 years, 9 months ago) by caltinay
Original Path: trunk/scons
Re-enabled threaded MKL on epic.


Revision 3861 - Directory Listing
Modified Fri Mar 9 02:06:29 2012 UTC (5 years, 9 months ago) by caltinay
Original Path: trunk/scons
Added options file that disables openMP and replaces the MKL library for savanna.


Revision 3853 - Directory Listing
Modified Thu Mar 1 07:25:03 2012 UTC (5 years, 9 months ago) by caltinay
Original Path: trunk/scons
Fixed hybrid mode when using OpenMPI by adding --cpus-per-rank argument to
mpirun in the launcher. Updated epic options file accordingly.


Revision 3843 - Directory Listing
Modified Mon Feb 27 05:50:58 2012 UTC (5 years, 9 months ago) by caltinay
Original Path: trunk/scons
Updated epic options, disabled OpenMP until problems solved.


Revision 3842 - Directory Listing
Modified Mon Feb 27 04:19:16 2012 UTC (5 years, 9 months ago) by caltinay
Original Path: trunk/scons
Updated savanna libraries and compiler version.


Revision 3836 - Directory Listing
Modified Thu Feb 16 03:17:18 2012 UTC (5 years, 10 months ago) by caltinay
Original Path: trunk/scons
Transport problem support for ripley.


Revision 3825 - Directory Listing
Modified Tue Feb 14 06:11:58 2012 UTC (5 years, 10 months ago) by gross
Original Path: trunk/scons
don't call MPI withing parallel regions

Revision 3822 - Directory Listing
Modified Mon Feb 13 06:22:06 2012 UTC (5 years, 10 months ago) by gross
Original Path: trunk/scons
Transport solver supports now constraints (except the linear CN)

Revision 3814 - Directory Listing
Modified Thu Feb 9 00:11:08 2012 UTC (5 years, 10 months ago) by caltinay
Original Path: trunk/scons
Changes to savanna options file to use intel 12 and numpy 1.6.1.


Revision 3793 - Directory Listing
Modified Wed Feb 1 07:39:43 2012 UTC (5 years, 10 months ago) by gross
Original Path: trunk/scons
new implementation of FCT solver with some modifications to the python interface

Revision 3792 - Directory Listing
Modified Wed Feb 1 06:16:25 2012 UTC (5 years, 10 months ago) by caltinay
Original Path: trunk/scons
Merged ripley rectangular domain into trunk.


Revision 3737 - Directory Listing
Modified Tue Dec 13 00:04:39 2011 UTC (6 years ago) by caltinay
Original Path: trunk/scons
Reordered and removed superfluous libraries from link lines. Hope W32 likes
that.


Revision 3676 - Directory Listing
Modified Thu Nov 17 03:52:25 2011 UTC (6 years, 1 month ago) by jfenwick
Original Path: trunk/scons
Removed some debug text
Corrected some dudley where they should not have been.
Set savanna to build shared for now


Revision 3675 - Directory Listing
Modified Thu Nov 17 00:53:38 2011 UTC (6 years, 1 month ago) by jfenwick
Original Path: trunk/scons
pasowrap joins the trunk.


Revision 3647 - Directory Listing
Modified Tue Nov 1 23:33:18 2011 UTC (6 years, 1 month ago) by lgao
Original Path: trunk/scons
With this option file, unit tests finished successfully with the following order to load module: 

module load mpi/gcc/openmpi/1.4.3
module load python/2.6.7
module load boost/1.46.1-python-2.6
module load netcdf/4.0.1
module load scons/2.0.1-python-2.6
module load intel-compilers/11.1.075
module load intel-mkl/10.3.5.220
module load python-numpy/1.3.0-python-2.6
module load cppunit/1.12.1
module load python-matplotlib/0.98.5.3-python-2.6
module load hdf5/1.8.6
module load silo/4.7.2
module load hypre/2.0.0

HYPRE is loaded but not used yet since the installed hypre module on epic comes with static library only. 



Revision 3646 - Directory Listing
Modified Fri Oct 28 05:20:38 2011 UTC (6 years, 1 month ago) by lgao
Original Path: trunk/scons
working option file on epic



Revision 3643 - Directory Listing
Modified Thu Oct 27 06:23:16 2011 UTC (6 years, 1 month ago) by caltinay
Original Path: trunk/scons
Updated savanna options file. We're now using silo 4.8, netcdf 4.1.1 and boost 1.42 on savanna.


Revision 3626 - Directory Listing
Modified Fri Oct 14 02:34:55 2011 UTC (6 years, 2 months ago) by gross
Original Path: trunk/scons
Silo and cppunit added for epic (there is still a problem with hypre)

Revision 3624 - Directory Listing
Modified Wed Oct 12 07:58:25 2011 UTC (6 years, 2 months ago) by gross
Original Path: trunk/scons
changes for epic.ivec.org

Revision 3623 - Directory Listing
Modified Tue Oct 11 03:59:40 2011 UTC (6 years, 2 months ago) by caltinay
Original Path: trunk/scons
Added option to enable/disable saving of mesh data in weipa.
Now defaults to false since it's mainly for debugging.
Fixes #640.


Revision 3622 - Directory Listing
Modified Thu Oct 6 08:06:41 2011 UTC (6 years, 2 months ago) by trankine
Original Path: trunk/scons
Epic.ivec.org scons build template

Revision 3616 - Directory Listing
Modified Fri Sep 30 00:56:37 2011 UTC (6 years, 2 months ago) by jfenwick
Original Path: trunk/scons
Center a table that I noticed and use upquote package to stop LaTeX from
mucking about with ' in python code.

Fixes #632


Revision 3605 - Directory Listing
Modified Mon Sep 19 07:47:23 2011 UTC (6 years, 2 months ago) by trankine
Original Path: trunk/scons
cppunit actually does do the install step in the msvc project files and does put the build products where scons can find them.

Revision 3601 - Directory Listing
Modified Mon Sep 19 01:21:33 2011 UTC (6 years, 2 months ago) by trankine
Original Path: trunk/scons
Updating cgisrv3 options for external cppunit - because I cant see brackets.

Revision 3600 - Directory Listing
Modified Mon Sep 19 00:58:15 2011 UTC (6 years, 2 months ago) by trankine
Original Path: trunk/scons
Updating cgisrv3 options for external cppunit

Revision 3598 - Directory Listing
Modified Fri Sep 16 01:01:17 2011 UTC (6 years, 3 months ago) by caltinay
Original Path: trunk/scons
New config option build_shared (which replaces share_paso & share_esysUtils).
Also enabled building escriptreader library on Windows which should now
work in both shared and static mode.


Revision 3597 - Directory Listing
Modified Thu Sep 15 06:03:17 2011 UTC (6 years, 3 months ago) by caltinay
Original Path: trunk/scons
Switching to external cppunit:
-removed tools/CppUnitTest
-updated scons script and files
-updated tests to changed API
-updated readme

Bumped scons options file version to 201. Additions:
-cppunit*
-boomeramg*
-vsl_random



Revision 3596 - Directory Listing
Modified Thu Sep 15 05:58:15 2011 UTC (6 years, 3 months ago) by caltinay
Original Path: trunk/scons
Deleted some obsolete options files.


Revision 3583 - Directory Listing
Modified Tue Sep 6 04:27:59 2011 UTC (6 years, 3 months ago) by caltinay
Original Path: trunk/scons
Updated shake75 options file.


Revision 3548 - Directory Listing
Modified Tue Aug 9 04:00:27 2011 UTC (6 years, 4 months ago) by jfenwick
Original Path: trunk/scons
Fixing badger options


Revision 3547 - Directory Listing
Modified Tue Aug 2 04:24:09 2011 UTC (6 years, 4 months ago) by lgao
Original Path: trunk/scons
Set "lapack" to "mkl" before the mantis bug 0000616 is solved. 



Revision 3545 - Directory Listing
Modified Wed Jul 27 06:29:09 2011 UTC (6 years, 4 months ago) by lgao
Original Path: trunk/scons
Turn off VSL for random data before the MKL library link line problem has been solved. 



Revision 3541 - Directory Listing
Modified Fri Jul 22 03:21:06 2011 UTC (6 years, 4 months ago) by trankine
Original Path: trunk/scons
migration to system maintained dependancies (not per build). will allow multi builders

Revision 3529 - Directory Listing
Modified Thu May 26 00:36:10 2011 UTC (6 years, 6 months ago) by caltinay
Original Path: trunk/scons
Re-enable VisIt and Silo on savanna and use gcc-4.6 on shake75.


Revision 3527 - Directory Listing
Modified Tue May 24 06:59:20 2011 UTC (6 years, 6 months ago) by gross
Original Path: trunk/scons
modifications to the coal seam gas 

Revision 3522 - Directory Listing
Modified Tue May 24 00:57:58 2011 UTC (6 years, 6 months ago) by gross
Original Path: trunk/scons
(almost) full support for Point elements

Revision 3513 - Directory Listing
Modified Thu May 19 04:45:19 2011 UTC (6 years, 7 months ago) by lgao
Original Path: trunk/scons
When "werror" is set to True, scons build will complains about compilation failure of some boost "multi-array" test case. This causes recently unit-tests failures. So I set "werror" back to False before someone who has the knowledge fixes the problem.



Revision 3508 - Directory Listing
Modified Fri May 13 04:15:29 2011 UTC (6 years, 7 months ago) by lgao
Original Path: trunk/scons
Add Boomer AMG as a new preconditioner 
Can be used by .setPreconditioner(SolverOptions.BOOMERAMG)
and the following parallel coarsening method can be 
used together with Boomer AMG preconditioner: 
  .setCoarsening(SolverOptions.CIJP_FIXED_RANDOM_COARSENING)
  .setCoarsening(SolverOptions.CIJP_COARSENING)
  .setCoarsening(SolverOptions.FALGOUT_COARSENING)
  .setCoarsening(SolverOptions.PMIS_COARSENING)
  .setCoarsening(SolverOptions.HMIS_COARSENING)

Note that Boomer AMG is only available when MPI is enabled.  



Revision 3506 - Directory Listing
Modified Wed May 11 01:59:45 2011 UTC (6 years, 7 months ago) by jfenwick
Original Path: trunk/scons
Use VSL if MKLRANDOM is defined.
Use different seeds for different ranks/threads.
Use different seeds for successive calls with no seed given.


Revision 3494 - Directory Listing
Modified Tue Apr 5 04:12:08 2011 UTC (6 years, 8 months ago) by gross
Original Path: trunk/scons
more coal seam gas

Revision 3485 - Directory Listing
Modified Thu Mar 24 22:44:40 2011 UTC (6 years, 8 months ago) by gross
Original Path: trunk/scons
some compile fixes

Revision 3481 - Directory Listing
Modified Wed Mar 23 04:05:58 2011 UTC (6 years, 8 months ago) by gross
Original Path: trunk/scons


Revision 3461 - Directory Listing
Modified Sun Feb 6 23:33:37 2011 UTC (6 years, 10 months ago) by caltinay
Original Path: trunk/scons
Re-enabled silo on savanna as well.


Revision 3460 - Directory Listing
Modified Sun Feb 6 23:24:22 2011 UTC (6 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Re-enabling MPI on savanna


Revision 3458 - Directory Listing
Modified Mon Jan 31 07:06:42 2011 UTC (6 years, 10 months ago) by gross
Original Path: trunk/scons
more on AMG under MPI

Revision 3453 - Directory Listing
Modified Tue Jan 25 03:59:30 2011 UTC (6 years, 10 months ago) by caltinay
Original Path: trunk/scons
Disabled C99 extensions on guineapig again.


Revision 3449 - Directory Listing
Modified Fri Jan 21 05:48:15 2011 UTC (6 years, 10 months ago) by gross
Original Path: trunk/scons
compile problem in AMG fixed.

Revision 3446 - Directory Listing
Modified Thu Jan 20 06:47:07 2011 UTC (6 years, 10 months ago) by gross
Original Path: trunk/scons
and more work toward AMG MPI

Revision 3442 - Directory Listing
Modified Tue Jan 18 01:47:36 2011 UTC (6 years, 10 months ago) by gross
Original Path: trunk/scons
 emeregncy

Revision 3441 - Directory Listing
Modified Fri Jan 14 01:09:09 2011 UTC (6 years, 11 months ago) by gross
Original Path: trunk/scons
clarifiaction of function names as a first step towards a MPI version of AMG

Revision 3422 - Directory Listing
Modified Mon Dec 13 23:27:47 2010 UTC (7 years ago) by caltinay
Original Path: trunk/scons
Updated shake75 options file to use visit 2.2


Revision 3417 - Directory Listing
Modified Sun Dec 12 23:40:27 2010 UTC (7 years ago) by artak
Original Path: trunk/scons
Treat warnings as errors is disabled.

Revision 3402 - Directory Listing
Modified Tue Dec 7 07:36:12 2010 UTC (7 years ago) by gross
Original Path: trunk/scons
AMG support now block size > 3 (requires clapack or MKL).

additional diagnostics for AMG 



Revision 3393 - Directory Listing
Modified Fri Dec 3 04:14:56 2010 UTC (7 years ago) by caltinay
Original Path: trunk/scons
shake24 (darwin) needs -L/usr/lib to pull correct gcc library.
The python library path was also not entirely correct - fixed.


Revision 3358 - Directory Listing
Modified Wed Nov 17 08:02:32 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/scons
a more flexiblae version of safeDiv

Revision 3351 - Directory Listing
Modified Tue Nov 16 02:39:40 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/scons
modified approach for AMG coarsning using a panel

Revision 3350 - Directory Listing
Modified Mon Nov 15 05:14:43 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/scons
Fixed MSVC90 file as per Gordon's report.


Revision 3349 - Directory Listing
Modified Mon Nov 15 05:09:56 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/scons
escript now supports out-of-tree builds.
All build and test files are now created under a user-definable build_dir
directory.
This also fixes issue 291.
Removed most svn:ignore props since they are no longer required.


Revision 3344 - Directory Listing
Modified Thu Nov 11 23:26:52 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/scons
Phew!
-escript, finley, and dudley now uses weipa's saveVTK implementation
-moved tests from finley to weipa accordingly; dudley still to do
-rebaselined all test files
-fixed a few issues in weipa.saveVTK, e.g. saving metadata without schema
-added a deprecation warning to esys.escript.util.saveVTK
-todo: change doco, tests and other places to use weipa.saveVTK



Revision 3341 - Directory Listing
Modified Mon Nov 8 21:34:01 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/scons
Renamed MS options file.


Revision 3338 - Directory Listing
Modified Fri Nov 5 03:50:51 2010 UTC (7 years, 1 month ago) by jfenwick
Original Path: trunk/scons
Remove old name for man page to prevent clash with erlang.
Changed default library to link for boost to boost_python-mt



Revision 3335 - Directory Listing
Modified Wed Nov 3 05:02:57 2010 UTC (7 years, 1 month ago) by jfenwick
Original Path: trunk/scons
Fix the launcher so that it can give an environment even if buildvars is not present.
Environment now includes scons for standalone builds.
Fixes and cleanup for the install documentation.
scons TEMPLATES updated to define the optionfile version by default.

...mumble
   finley no longer imports escript into the default namespace
...

Revision 3333 - Directory Listing
Modified Mon Nov 1 06:08:05 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/scons
Updated lapack paths on guineapig.


Revision 3327 - Directory Listing
Modified Fri Oct 29 02:08:37 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/scons
missing omp function added.

Revision 3320 - Directory Listing
Modified Thu Oct 28 03:29:51 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/scons
This fixes the scons warning about not finding the Intel top dir on Savanna.


Revision 3303 - Directory Listing
Modified Mon Oct 25 04:33:31 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/scons
more clean up work on the AMG

Revision 3283 - Directory Listing
Modified Mon Oct 18 22:39:28 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/scons
AMG reengineered, BUG is Smoother fixed.



Revision 3266 - Directory Listing
Modified Wed Oct 13 00:32:46 2010 UTC (7 years, 2 months ago) by caltinay
Original Path: trunk/scons
Disable MPI on shake24 due to conflicting installations in default locations.


Revision 3260 - Directory Listing
Modified Mon Oct 11 03:41:35 2010 UTC (7 years, 2 months ago) by jfenwick
Original Path: trunk/scons
Removing dead files


Revision 3259 - Directory Listing
Modified Mon Oct 11 01:48:14 2010 UTC (7 years, 2 months ago) by jfenwick
Original Path: trunk/scons
Merging dudley and scons updates from branches


Revision 3193 - Directory Listing
Modified Tue Sep 21 06:56:44 2010 UTC (7 years, 2 months ago) by gross
Original Path: trunk/scons
more clean up in AMG

Revision 3183 - Directory Listing
Modified Tue Sep 14 23:09:59 2010 UTC (7 years, 3 months ago) by jfenwick
Original Path: trunk/scons
Adding timing information to unit tests.


Revision 3174 - Directory Listing
Modified Fri Sep 10 03:55:18 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/scons
Enabled debian's lapack on shake75.


Revision 3164 - Directory Listing
Modified Tue Sep 7 09:10:09 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/scons
Do not use VTK on guineapig - pyvisi is deprecated anyway.


Revision 3162 - Directory Listing
Modified Tue Sep 7 05:29:32 2010 UTC (7 years, 3 months ago) by jfenwick
Original Path: trunk/scons
Changes to match packages in the debian repo.
Also got rid of lib/pyversion


Revision 3140 - Directory Listing
Modified Thu Sep 2 07:26:43 2010 UTC (7 years, 3 months ago) by gross
Original Path: trunk/scons
a more robust version of MINRES (really?)

Revision 3097 - Directory Listing
Modified Fri Aug 20 04:59:12 2010 UTC (7 years, 3 months ago) by gross
Original Path: trunk/scons
some modifications to the GaussSeidel

Revision 3096 - Directory Listing
Modified Thu Aug 19 01:40:52 2010 UTC (7 years, 3 months ago) by caltinay
Original Path: trunk/scons
-New VisIt simulation control interface in weipa (uses VisIt's simv2)
-Rewrote restarts.py to be a more generic data manager for restarts and exports
-Removed weipa python file since the functionality is now handled by restarts.py


Revision 3094 - Directory Listing
Modified Fri Aug 13 08:38:06 2010 UTC (7 years, 4 months ago) by gross
Original Path: trunk/scons
The MPI and sequational GAUSS_SEIDEL have been merged.
The couring and main diagonal pointer is now manged by the patternm which means that they are calculated once only even if the preconditioner is deleted.




Revision 3076 - Directory Listing
Modified Mon Aug 2 05:21:40 2010 UTC (7 years, 4 months ago) by jfenwick
Original Path: trunk/scons
Removing hardcoded savanna from the SConstruct file.


Revision 3053 - Directory Listing
Modified Tue Jun 29 01:31:31 2010 UTC (7 years, 5 months ago) by jfenwick
Original Path: trunk/scons
Fixes to deal with new savanna configuration.
Blocking out missing images.


Revision 3052 - Directory Listing
Modified Tue Jun 29 00:57:45 2010 UTC (7 years, 5 months ago) by lgao
Original Path: trunk/scons
Revert the commit of this options file made by my last commit for Gauss-Seidel. 



Revision 3051 - Directory Listing
Modified Tue Jun 29 00:45:49 2010 UTC (7 years, 5 months ago) by lgao
Original Path: trunk/scons
Hybrid MPI/OpenMP versioned Gauss_Seidel preconditioner is added. 
To use it, use "SolverOptions.GAUSS_SEIDEL_MPI" in python script. 



Revision 3050 - Directory Listing
Modified Sun Jun 27 22:54:12 2010 UTC (7 years, 5 months ago) by jfenwick
Original Path: trunk/scons
Visual studio 2008 (v9.0) with Microsoft MPI libraries.
Courtesy of Gordon German.


Revision 3047 - Directory Listing
Modified Thu Jun 24 00:33:05 2010 UTC (7 years, 5 months ago) by jfenwick
Original Path: trunk/scons
Adding user name to tmpfiles.
Changing name of cluster options file to savanna from service0


Revision 3045 - Directory Listing
Modified Fri Jun 18 06:38:18 2010 UTC (7 years, 6 months ago) by lgao
Original Path: trunk/scons
Enable MKL and Lapack (the unit test problem has been fixed after Artak's commit). 



Revision 3042 - Directory Listing
Modified Fri Jun 18 04:01:43 2010 UTC (7 years, 6 months ago) by lgao
Original Path: trunk/scons
Disable Lapack to disable MKL.



Revision 3040 - Directory Listing
Modified Fri Jun 18 03:05:17 2010 UTC (7 years, 6 months ago) by lgao
Original Path: trunk/scons
Using lastest MKL library and set "usemkl=no" before the
problem with MKL in unit tests is solved ("maximum number 
of iteration step reached" for test_***_AMG_System). 



Revision 3038 - Directory Listing
Modified Tue Jun 15 07:08:46 2010 UTC (7 years, 6 months ago) by lgao
Original Path: trunk/scons
Update the path to Intel-mpi 4.0.0.027



Revision 3036 - Directory Listing
Modified Mon Jun 14 00:13:18 2010 UTC (7 years, 6 months ago) by caltinay
Original Path: trunk/scons
Fixed compilation with MPI and NetCDF 4.1. Removed obsolete options file.


Revision 3030 - Directory Listing
Modified Fri May 21 05:25:20 2010 UTC (7 years, 6 months ago) by lgao
Original Path: trunk/scons
Update savanna_options file to use the correct silo module.



Revision 3024 - Directory Listing
Modified Wed May 5 01:12:32 2010 UTC (7 years, 7 months ago) by jfenwick
Original Path: trunk/scons
Some savanna fixes but not complete


Revision 3023 - Directory Listing
Modified Wed May 5 01:00:16 2010 UTC (7 years, 7 months ago) by lgao
Original Path: trunk/scons
Option file update for machine "sunzi".


Revision 3019 - Directory Listing
Modified Fri Apr 30 06:10:37 2010 UTC (7 years, 7 months ago) by jfenwick
Original Path: trunk/scons
adding Lin options

Revision 2987 - Directory Listing
Modified Tue Mar 16 01:32:43 2010 UTC (7 years, 9 months ago) by gross
Original Path: trunk/scons
FCT solver rewritten

Revision 2968 - Directory Listing
Modified Wed Mar 3 04:02:30 2010 UTC (7 years, 9 months ago) by caltinay
Original Path: trunk/scons
Updated service0 & shake75 options to use cxx_extra


Revision 2967 - Directory Listing
Modified Wed Mar 3 03:50:46 2010 UTC (7 years, 9 months ago) by caltinay
Original Path: trunk/scons
scons now understands cc_extra and cxx_extra. The former applies only to the
C compiler, the latter to the C++ compiler which fixes #510.


Revision 2925 - Directory Listing
Modified Thu Feb 4 23:12:34 2010 UTC (7 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Update savanna to build c99 style



Revision 2923 - Directory Listing
Modified Thu Feb 4 04:05:36 2010 UTC (7 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Bringing non-release specific things from stage3.1 r2922 back to trunk


Revision 2905 - Directory Listing
Modified Tue Feb 2 04:26:42 2010 UTC (7 years, 10 months ago) by gross
Original Path: trunk/scons
some missing files.

Revision 2903 - Directory Listing
Modified Tue Feb 2 00:20:52 2010 UTC (7 years, 10 months ago) by lgao
Original Path: trunk/scons
Switch to MKL 10.2.2.025 on service0.



Revision 2902 - Directory Listing
Modified Mon Feb 1 23:53:16 2010 UTC (7 years, 10 months ago) by lgao
Original Path: trunk/scons
Switch to Parmetis 3.1.1 on service0.



Revision 2900 - Directory Listing
Modified Mon Feb 1 06:05:38 2010 UTC (7 years, 10 months ago) by caltinay
Original Path: trunk/scons
Switch to Silo 4.7.2 on service0 (bug fix release).


Revision 2883 - Directory Listing
Modified Thu Jan 28 02:28:27 2010 UTC (7 years, 10 months ago) by caltinay
Original Path: trunk/scons
Switch to gcc 4.4 on guineapig


Revision 2882 - Directory Listing
Modified Thu Jan 28 02:27:49 2010 UTC (7 years, 10 months ago) by caltinay
Original Path: trunk/scons
Scons now allows to specify which C & C++ compiler to use via cc and cxx
variables. Fixes mantis # 485.


Revision 2881 - Directory Listing
Modified Thu Jan 28 02:03:15 2010 UTC (7 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Don't panic.
Updating copyright stamps


Revision 2867 - Directory Listing
Modified Fri Jan 22 06:28:02 2010 UTC (7 years, 10 months ago) by gross
Original Path: trunk/scons
now option -i is used if no script is given

Revision 2844 - Directory Listing
Modified Fri Jan 15 00:23:39 2010 UTC (7 years, 11 months ago) by jfenwick
Original Path: trunk/scons
Fixed some options to deal with silo errors.


Revision 2840 - Directory Listing
Modified Thu Jan 14 01:00:15 2010 UTC (7 years, 11 months ago) by caltinay
Original Path: trunk/scons
Enabled Silo on guineapig


Revision 2798 - Directory Listing
Modified Thu Dec 3 01:02:47 2009 UTC (8 years ago) by caltinay
Original Path: trunk/scons
Use system NetCDF on guineapig.


Revision 2797 - Directory Listing
Modified Wed Dec 2 23:30:21 2009 UTC (8 years ago) by caltinay
Original Path: trunk/scons
Changed NetCDF include path - this should enable netcdf on guineapig.


Revision 2796 - Directory Listing
Modified Wed Dec 2 05:02:43 2009 UTC (8 years ago) by caltinay
Original Path: trunk/scons
null-commit to trigger buildbot


Revision 2790 - Directory Listing
Modified Sun Nov 29 23:57:45 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/scons
Fix scons file for unit tests.


Revision 2788 - Directory Listing
Modified Fri Nov 27 05:23:14 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/scons
Go back to version 10


Revision 2787 - Directory Listing
Modified Fri Nov 27 05:03:09 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/scons
Worked around icc11 problem in table interpolate.
Best guess is that a stackframe was getting mauled somehow.



Revision 2748 - Directory Listing
Modified Tue Nov 17 07:32:59 2009 UTC (8 years, 1 month ago) by gross
Original Path: trunk/scons
Macro elements are implemented now. VTK writer for macro elements still needs testing.

Revision 2745 - Directory Listing
Modified Tue Nov 17 04:23:02 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/scons
Added getInfLocator and getSupLocator to pdetools.
This means if you want to use them, you will need to import them.
These methods return a locator to a point with the smallest/largest value.

Added resolve() and delay() to utils.
Now you can do things like:

d=delay(v)
..
..
z=resolve(d+1)



Revision 2742 - Directory Listing
Modified Thu Nov 12 06:03:37 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/scons
Merging changes from the lapack branch.

The inverse() operation has been moved into c++. [No lazy support for this operation yet.]
Optional Lapack support has been added for matrices larger than 3x3. 
service0 is set to use mkl_lapack.




Revision 2737 - Directory Listing
Modified Tue Nov 3 00:44:00 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/scons
icc will now record compiler options in libraries.
escriptParams now has a pretty printer option for lazy expressions.

Revision 2731 - Directory Listing
Modified Thu Oct 22 04:17:21 2009 UTC (8 years, 1 month ago) by trankine
Original Path: trunk/scons
* Added xe.ivec.org options file as reminder for David Schibeci [dschibeci@ccg.murdoch.edu.au]

Revision 2729 - Directory Listing
Modified Thu Oct 22 01:45:28 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/scons
UMFPack and MPI added to guineapig options.
Defaults for omp and mpi removed from SConstruct.


Revision 2727 - Directory Listing
Modified Wed Oct 21 23:56:23 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/scons
Added guineapig options


Revision 2715 - Directory Listing
Modified Sun Oct 11 23:29:56 2009 UTC (8 years, 2 months ago) by lgao
Original Path: trunk/scons
change back to use Intel MPI (avoid the MPT+MKL problem).



Revision 2702 - Directory Listing
Modified Wed Sep 30 23:54:17 2009 UTC (8 years, 2 months ago) by artak
Original Path: trunk/scons
UMFPACK is enabled for savanna

Revision 2696 - Directory Listing
Modified Wed Sep 30 00:36:05 2009 UTC (8 years, 2 months ago) by lgao
Original Path: trunk/scons
change service0_options.py to use MPT 1.24



Revision 2680 - Directory Listing
Modified Thu Sep 24 00:40:07 2009 UTC (8 years, 2 months ago) by caltinay
Original Path: trunk/scons
Updated service0 options file to use Silo 4.7 on Savanna


Revision 2679 - Directory Listing
Modified Thu Sep 24 00:36:57 2009 UTC (8 years, 2 months ago) by caltinay
Original Path: trunk/scons
Updated shake75 options file


Revision 2659 - Directory Listing
Modified Thu Sep 10 03:54:50 2009 UTC (8 years, 3 months ago) by artak
Original Path: trunk/scons
first attempt of AMG on blocks

Revision 2629 - Directory Listing
Modified Tue Aug 25 06:39:26 2009 UTC (8 years, 3 months ago) by trankine
Original Path: trunk/scons
Changes to work on Windows with boost 1.39.0. Using command separator &. Note: there are still 2 CheckFunc that fail (but can be bypassed as the rest of the build works). 

Revision 2625 - Directory Listing
Modified Fri Aug 21 06:30:25 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/scons
Merging changes from new doco branch.
All docstrings are now in reStructured text.
A few email addresses have been fixes as well.

Revision 2603 - Directory Listing
Modified Wed Aug 12 00:44:35 2009 UTC (8 years, 4 months ago) by jfenwick
Original Path: trunk/scons
Compute nodes will now read the correct options file and use the correct compiler.
I have added env_export to the service0 options file.
Use this if there are variables from the calling environment which need to be passed through scons. (In this case the INTEL_LICENSE_FILE variable).

There are still some issues with icpc linking.


Revision 2567 - Directory Listing
Modified Fri Jul 31 01:17:37 2009 UTC (8 years, 4 months ago) by jfenwick
Original Path: trunk/scons
Added example options file for Mac


Revision 2554 - Directory Listing
Modified Fri Jul 24 05:38:54 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/scons
bug with MKL call fixed.

Revision 2549 - Directory Listing
Modified Mon Jul 20 06:43:47 2009 UTC (8 years, 4 months ago) by jfenwick
Original Path: trunk/scons
Remainder of copyright date fixes

Revision 2548 - Directory Listing
Modified Mon Jul 20 06:20:06 2009 UTC (8 years, 4 months ago) by jfenwick
Original Path: trunk/scons
Updating copyright notices

Revision 2530 - Directory Listing
Modified Thu Jul 9 06:08:44 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/scons
Some changes relating to install from source.


Revision 2528 - Directory Listing
Modified Wed Jul 8 23:27:49 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/scons
Added stand-alone example options file for install instructions.



Revision 2512 - Directory Listing
Modified Thu Jul 2 05:34:14 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/scons
Made the warnings against linking gomp a bit more detailed.
Commented out gomp from the linux sample.

Revision 2508 - Directory Listing
Modified Thu Jul 2 04:33:25 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/scons
Ensured that example files are copied with build_py_tests rather than py_tests.
This means that:
build_full
will set up all the files ready for utest.sh

Revision 2506 - Directory Listing
Modified Thu Jul 2 01:23:30 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/scons
Fix to allow binary unit tests to run.
Note: I have only fixed the non-windows systems and I don't know if they
have the same problem.

Diagnosis of the utest problems continues.



Revision 2505 - Directory Listing
Modified Thu Jul 2 00:46:53 2009 UTC (8 years, 5 months ago) by lgao
Original Path: trunk/scons
adding config file for Lin's machine



Revision 2504 - Directory Listing
Modified Wed Jul 1 07:27:17 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/scons
First stage of fix to utest.sh


Revision 2502 - Directory Listing
Modified Tue Jun 30 05:49:22 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/scons
tests for examples added. utest is not working yet.

Revision 2470 - Directory Listing
Modified Thu Jun 11 08:32:32 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/scons
SolverOption class added. It is not linked with anything.

Revision 2464 - Directory Listing
Modified Tue Jun 9 04:14:07 2009 UTC (8 years, 6 months ago) by artak
Original Path: trunk/scons
updated to use openmpi

Revision 2456 - Directory Listing
Modified Wed Jun 3 03:54:25 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/scons
Switching savanna scons to use python-2.6.2 and boost-1.39


Revision 2455 - Directory Listing
Modified Wed Jun 3 03:29:07 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/scons
Merging changes from numpy branch.


Revision 2447 - Directory Listing
Modified Fri May 29 04:32:53 2009 UTC (8 years, 6 months ago) by artak
Original Path: trunk/scons
minor

Revision 2423 - Directory Listing
Modified Thu May 14 05:02:20 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/scons
* handling LD_LIBRARY_PATH for Windows (that only uses PATH)
* passing PATH env var in mpi call for Windows

Revision 2416 - Directory Listing
Modified Wed May 13 06:03:59 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/scons
* fix Windows MPI case: export system variables
* define ESCRIPT_NUM_PROC and ESCRIPT_NUM_NODES
* cleanup using os.path.join()

Revision 2414 - Directory Listing
Modified Tue May 12 03:33:49 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/scons
added flags (commented out) to compile MPI version on Windows (Visual Studio 2003) using MPICH2

Revision 2394 - Directory Listing
Modified Fri Apr 17 01:32:30 2009 UTC (8 years, 8 months ago) by caltinay
Original Path: trunk/scons
Updated shake75 options file.


Revision 2388 - Directory Listing
Modified Wed Apr 15 06:21:25 2009 UTC (8 years, 8 months ago) by jfenwick
Original Path: trunk/scons
scons files executed on compute nodes will use the config file for the service node (when we get the other issues 
sorted).


Revision 2387 - Directory Listing
Modified Wed Apr 15 05:05:27 2009 UTC (8 years, 8 months ago) by jfenwick
Original Path: trunk/scons
Changed the figure eps->pdf to use a builder to make hypothetical windows doc building easier.

Revision 2376 - Directory Listing
Modified Tue Apr 7 06:21:31 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/scons
output form others than the master process can now be switched off (stderr is still redirected to master)

Revision 2374 - Directory Listing
Modified Tue Apr 7 00:26:49 2009 UTC (8 years, 8 months ago) by jfenwick
Original Path: trunk/scons
Modified utest to use the wrapper script.


Revision 2368 - Directory Listing
Modified Mon Apr 6 05:05:35 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/scons
some fixes for MKL and Mpisize>1

Revision 2366 - Directory Listing
Modified Mon Apr 6 03:10:55 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/scons
starter for MPICH and MPICH2 add

Revision 2365 - Directory Listing
Modified Mon Apr 6 01:25:25 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/scons
all tests passed under scons on 4 mpi processes with  openmpi on shake34

Revision 2363 - Directory Listing
Modified Fri Apr 3 03:56:19 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/scons
scons should now be able to run tests under MPI and OpenMP

Revision 2358 - Directory Listing
Modified Wed Apr 1 22:25:24 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/scons
mpi is not really ready yet.

Revision 2357 - Directory Listing
Modified Wed Apr 1 06:01:56 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/scons
fixes to run escript command with SGI MPT

Revision 2344 - Directory Listing
Modified Mon Mar 30 02:13:58 2009 UTC (8 years, 8 months ago) by jfenwick
Original Path: trunk/scons
Change __url__ to launchpad site


Revision 2337 - Directory Listing
Modified Thu Mar 26 07:07:42 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/scons
Transport class uses now useBackwardEuler rather than the mysterious theta.

Revision 2308 - Directory Listing
Modified Mon Mar 16 01:20:56 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/scons
size_t may be 64 bits which is incompatible to MPI_INT. This problem is fixed by inserting a cast in Mesh_read.c. 
Moreover a fix has been added making sure that gmsh and triangle are executed on one processor only.




Revision 2300 - Directory Listing
Modified Wed Mar 11 08:17:57 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/scons
a power law model. tests still need to be added and needs to be linked with an incompressible solver.

Revision 2292 - Directory Listing
Modified Fri Feb 27 02:07:43 2009 UTC (8 years, 9 months ago) by jfenwick
Original Path: trunk/scons
Disabling default use of OpenMP in SConstruct.
I have set the option in service0_options so savanna should build as before.

If you are expecting OpenMP by default on any other machine please adjust your options files accordingly.



Revision 2289 - Directory Listing
Modified Wed Feb 25 03:38:59 2009 UTC (8 years, 9 months ago) by jfenwick
Original Path: trunk/scons
Main compilation page copied from twiki.

Revision 2286 - Directory Listing
Modified Mon Feb 23 02:50:06 2009 UTC (8 years, 9 months ago) by jfenwick
Original Path: trunk/scons
Added build_full target. This will build escript, the unit test binaries 
and compile all the python files.
This should be called before using utest.sh.

Added gcc openmp params for badger


Revision 2284 - Directory Listing
Modified Fri Feb 20 02:10:59 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/scons
soem small fixes.

Revision 2276 - Directory Listing
Modified Tue Feb 17 06:21:31 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/scons
utest.sh now builds correctly for Macintosh.
It turns out if you really want to differentiate between Mac and Linux, 
you should use platform not os.


Revision 2271 - Directory Listing
Modified Mon Feb 16 05:08:29 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Merging version 2269 to trunk


Revision 2268 - Directory Listing
Modified Fri Feb 13 01:23:42 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Tweaking environment


Revision 2258 - Directory Listing
Modified Tue Feb 10 00:27:44 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Making directories required for pyvisi tests


Revision 2253 - Directory Listing
Modified Sun Feb 8 23:35:28 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Fixing incorrect user info


Revision 2241 - Directory Listing
Modified Wed Feb 4 03:34:57 2009 UTC (8 years, 10 months ago) by artak
Original Path: trunk/scons
correct openmp options for MAC

Revision 2239 - Directory Listing
Modified Wed Feb 4 00:42:46 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Added pyvisi and c++ unit tests to build of utest.sh

Revision 2235 - Directory Listing
Modified Tue Feb 3 01:47:47 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/scons
Added support for generating non-scons test scripts

Revision 2195 - Directory Listing
Modified Wed Jan 7 04:13:52 2009 UTC (8 years, 11 months ago) by jfenwick
Original Path: trunk/scons
Fixed a bug in lazy evaluation of Tensor Products.
Added / to end of boost path


Revision 2185 - Directory Listing
Modified Mon Dec 22 04:41:03 2008 UTC (8 years, 11 months ago) by caltinay
Original Path: trunk/scons
Updated savanna scons file to pick up Silo library.


Revision 2184 - Directory Listing
Modified Mon Dec 22 04:27:26 2008 UTC (8 years, 11 months ago) by caltinay
Original Path: trunk/scons
Scons'ified escriptreader library and tools. Added checks and options for the
Silo library which is required for escript2silo and optional for the library.
Updated shake75 options file.


Revision 2179 - Directory Listing
Modified Thu Dec 18 00:23:55 2008 UTC (9 years ago) by caltinay
Original Path: trunk/scons
Fixed compilation with boost 1.37 (namespace clash).


Revision 2130 - Directory Listing
Modified Thu Dec 4 05:56:45 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/scons
Modifications to keep both the mac and linux happy.


Revision 2107 - Directory Listing
Modified Fri Nov 28 04:39:07 2008 UTC (9 years ago) by artak
Original Path: trunk/scons
Current version of AMG uses ILU for relaxation, however it is not stable when schur matrix becames more denser. For example it is not stable for -e paramenter is more 400 in 2D for convection problem 

Revision 2100 - Directory Listing
Modified Wed Nov 26 08:13:00 2008 UTC (9 years ago) by gross
Original Path: trunk/scons
This commit cleans up the incompressible solver and adds a DarcyFlux solver in model module. 
Some documentation for both classes has been added.
The convection code is only linear at the moment.




Revision 2078 - Directory Listing
Modified Thu Nov 20 16:10:10 2008 UTC (9 years ago) by phornby
Original Path: trunk/scons
Two changes.

1. Move blocktimer from escript to esysUtils.
2. Make it possible to link to paso as a DLL or .so.

Should have no effect on 'nix's

In respect of 1., blocktimer had begun to spring up everywhere, so
for the moment I thought it best to move it to the only other library that
pops up all over the place.

In respect of 2., paso needed to be a DLL in order to use the windows intelc /fast
option, which does aggressive multi-file optimisations. Even in its current form, it either
vectorises or parallelises  hundreds more loops in the esys system than appear in the pragmas.

In achieving 2. I have not been too delicate in adding

PASO_DLL_API

declarations to the .h files in paso/src. Only toward the end of the process of
the conversion, when the number of linker errors dropped below 20, say, did I choosy about what
functions in a header I declared PASO_DLL_API. As a result, there are likely to be many routines
declared as external functions symbols that are in fact internal to the paso DLL. 
Why is this an issue?  It prevents the intelc compiler from getting aggressive on the paso module.
With pain there is sometimes gain. At least all the DLL rules in windows give good
(non-microsoft) compiler writers a chance to really shine.

So, if you should see a PASO_DLL_API on a function in a paso header file,
and think to yourself, "that function is only called in paso, why export it?", then feel free to
delete the PASO_DLL_API export declaration.

Here's hoping for no breakage.....

Revision 2058 - Directory Listing
Modified Mon Nov 17 13:35:10 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/scons
Added (as comment for the moment) very aggressive intelc optimisation.
Also add options (as comments) to compile esysUtis and paso as DLL's so
I can eventually use the /fast option on the intelc compiler.

Revision 2045 - Directory Listing
Modified Sat Nov 15 14:08:09 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/scons
Make the windows intel compiler work harder at un-rolling loops and inlining absolutely everything
it can.

Revision 2044 - Directory Listing
Modified Sat Nov 15 13:19:49 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/scons
Consolidate many of the icl speed options into the /Ox option.

Revision 2043 - Directory Listing
Modified Sat Nov 15 12:53:27 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/scons
Make the intel compiler work for its money.

Revision 2042 - Directory Listing
Modified Sat Nov 15 12:52:46 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/scons
Prevent Windows compilers from keeping their own program database file.
This allows the use of the -jn scons option on Windows.

Revision 2034 - Directory Listing
Modified Thu Nov 13 03:03:42 2008 UTC (9 years, 1 month ago) by artak
Original Path: trunk/scons
variable <set> is initilized to get rid of compiler warnning errors. finley/src/Quadrature.c

Revision 2026 - Directory Listing
Modified Tue Nov 11 01:56:54 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/scons
I have changed the default scons options for gcc to be much more picky about warnings.
By default warnings will be treated as errors; so a program with warnings won't compile.

If you need to turn this off, usewarnings=no will work.

The previous usepedantic oprtion is no longer turned on by default.

This should have no effect on any of the other compilers.
If anyone wants to jump in and supply sensible values for the fatalwarnings variable for their favourite compiler go ahead.

Revision 2014 - Directory Listing
Modified Mon Nov 10 12:44:51 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/scons
Refine the intelc compiler options, and link to the dll version of libguide.

Revision 2013 - Directory Listing
Modified Mon Nov 10 12:16:32 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/scons
Add the tools_names vars to control the compiler toolset scons uses
on windows platforms. (See cgisrv3_options.py for example of use).

Revision 2011 - Directory Listing
Modified Mon Nov 10 10:54:38 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/scons
Commit this options file because cgisrv3 is to be the windows auto build and test machine.

Revision 2005 - Directory Listing
Modified Mon Nov 10 01:21:39 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/scons
Bringing all changes across from schroedinger.
(Note this does not mean development is done, just that it will happen
on the trunk for now).
If anyone notices any problems please contact me.



Revision 1984 - Directory Listing
Modified Thu Nov 6 22:10:28 2008 UTC (9 years, 1 month ago) by caltinay
Original Path: trunk/scons
Added shake75 build options file


Revision 1982 - Directory Listing
Modified Thu Nov 6 06:16:07 2008 UTC (9 years, 1 month ago) by ksteube
Original Path: trunk/scons
Changed options file for host shake71 to rodinia


Revision 1977 - Directory Listing
Modified Thu Nov 6 03:54:35 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/scons
More warning removal.

Revision 1954 - Directory Listing
Modified Fri Oct 31 03:22:34 2008 UTC (9 years, 1 month ago) by artak
Original Path: trunk/scons
condition is added to check wheter row sum is ZERO and some new coarsening algorithm is also added

Revision 1946 - Directory Listing
Modified Wed Oct 29 05:48:53 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/scons
A cleanup of some of the problems I found doing a Wall compile.

Removed some commented out lines.
Swapped some member initialisers.
Removed virtual qualifiers from some methods in FunctionSpace.
Fixed some unused or (possibly) uninitialised variables.



Revision 1929 - Directory Listing
Modified Fri Oct 24 09:20:17 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/scons
abortive attempt to automate the choice of windows compiler based uponj the options file.

Revision 1928 - Directory Listing
Modified Fri Oct 24 08:20:23 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/scons
Pass 2 at getting openMP going on windows.
Problem is incompatible mathinf.h and system math.h at this point.

Revision 1927 - Directory Listing
Modified Fri Oct 24 06:24:49 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/scons
First cut at omp options for windows.

Revision 1902 - Directory Listing
Modified Wed Oct 22 03:54:14 2008 UTC (9 years, 1 month ago) by artak
Original Path: trunk/scons
some bugs fixed in coresening methods

Revision 1872 - Directory Listing
Modified Mon Oct 13 00:18:55 2008 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/scons
Closing the moreshared branch


Revision 1859 - Directory Listing
Modified Wed Oct 8 03:03:37 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/scons
first version of testing for transport solver.

Revision 1848 - Directory Listing
Modified Mon Oct 6 01:45:59 2008 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/scons
Fixed copyright notice on linux_gcc_eg_options.py



Revision 1836 - Directory Listing
Modified Fri Oct 3 01:53:50 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/scons
do some code reuse to ease upkeep.

Revision 1832 - Directory Listing
Modified Thu Oct 2 09:33:48 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/scons
This one is closer to working.

Revision 1831 - Directory Listing
Modified Thu Oct 2 08:55:16 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/scons
First cut at a windows option file. I probably does not work. This is a backup commit.



Revision 1826 - Directory Listing
Modified Thu Oct 2 03:13:27 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/scons
Updated for new build system.
Still generating std::bad_alloc deep in VTK.



Revision 1810 - Directory Listing
Modified Thu Sep 25 06:53:26 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/scons
Updated copyright for a few remaining python files


Revision 1804 - Directory Listing
Modified Wed Sep 24 07:52:19 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/scons
a robister version of the upwinding scheme

Revision 1796 - Directory Listing
Modified Wed Sep 17 01:45:46 2008 UTC (9 years, 3 months ago) by jfenwick
Original Path: trunk/scons
Merged noarrayview branch onto trunk.



Revision 1785 - Directory Listing
Modified Thu Sep 11 23:35:42 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/scons
Config variables such as boost_lib_path and netcdf_lib_path are stored in
the wrapper script bin/finleypython so the user gets the proper environment
automatically


Revision 1771 - Directory Listing
Modified Mon Sep 8 22:47:55 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/scons
Removed failing test until we fix a bug.
Fixed several compiler warnings.


Revision 1769 - Directory Listing
Modified Mon Sep 8 04:34:33 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/scons
test commit


Revision 1767 - Directory Listing
Modified Mon Sep 8 02:53:50 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/scons
print statements removed

Revision 1753 - Directory Listing
Modified Sun Sep 7 22:01:23 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/scons
Test suite fails due to missing arg in call to Finley_Mesh_createMappings.
Added NULL arg, but still need to find proper fix as loadMesh does not work.

Adjusted SConstruct to delete pythonMPI if not compiled for MPI.


Revision 1749 - Directory Listing
Modified Wed Sep 3 07:25:01 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/scons
fixes a problem with the saveVTK writing under mpi



Revision 1744 - Directory Listing
Modified Tue Sep 2 07:39:18 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/scons
Can now read and MPI distribute a finley mesh including the tags.


Revision 1741 - Directory Listing
Modified Mon Sep 1 04:06:41 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/scons
VTK writer supports HEX27 and REC9 now.

Revision 1731 - Directory Listing
Modified Wed Aug 27 03:11:24 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/scons
Updated "assumed modules" in scons/cognac_options.py


Revision 1728 - Directory Listing
Modified Tue Aug 26 05:15:32 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/scons
Minor update to configuration for cognac


Revision 1722 - Directory Listing
Modified Fri Aug 22 04:20:30 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/scons
The CSR matrix patters handed ober to ParMetis may not containn the main diagonal entry. 
This revisison is fixing the problem.



Revision 1705 - Directory Listing
Modified Thu Aug 14 05:56:40 2008 UTC (9 years, 4 months ago) by ksteube
Original Path: trunk/scons
Branch scons-dev is hereby closed.
Some parts of scons scripts have been re-written.


Revision 1692 - Directory Listing
Modified Thu Aug 7 23:05:37 2008 UTC (9 years, 4 months ago) by artak
Original Path: trunk/scons
working configuration

Revision 1690 - Directory Listing
Modified Thu Aug 7 01:12:38 2008 UTC (9 years, 4 months ago) by jfenwick
Original Path: trunk/scons
Added Configuration for shake63 (Joel-Box)

Revision 1662 - Directory Listing
Modified Tue Jul 22 01:49:21 2008 UTC (9 years, 4 months ago) by ksteube
Original Path: trunk/scons
Ran a simple Escript program on Mac OS Darwin. Still much to do.


Revision 1648 - Directory Listing
Modified Tue Jul 15 08:01:03 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/scons
Remove -c99 option on compiler, no longer needed.



Revision 1634 - Directory Listing
Modified Sat Jul 12 09:08:33 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/scons
linux_gcc_eg_options.py:
remove the std99 option, it is no longer needed as the code compiles without
C 1999 extension (need for these extensions elinminated in windows port).
Turn on all warnings except unknown pragmas. Should catch a lot of stuff.

SConstruct:
Impassioned plea

system_dep.h:
Add the standard incantation for dealing with const declarations
in C code called from C and C++

blocktimer:
Get the calling interface right for C code called from C and C++
and use __const as defined in system_dep.h
(Should be re-factored into compiler_dep.h file).

MeshAdapterFactory.cpp:
Since we have (effectively) no control over netCDF policy,
cast const char *'s to char *'s



Revision 1633 - Directory Listing
Modified Sat Jul 12 07:45:17 2008 UTC (9 years, 5 months ago) by trankine
Original Path: trunk/scons
Turn on netcdf in windows build. No new errors generated.... remarkable.

The correctly configured netCDF source and windows build config.
that matches enthought python25/vtk/PmdPyRT for windows, can be
obtained from

https://cgsrv1.arrc.csiro.au/subversion/swframeutils/thirdParty/netcdf/trunk

username & password needed. If you have access to our twiki, no new username is required,
but authorisation to read the repository will be required.


Revision 1628 - Directory Listing
Modified Fri Jul 11 13:12:46 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/scons

Merge in /branches/windows_from_1456_trunk_1620_merged_in branch.

You will find a preserved pre-merge trunk in tags under tags/trunk_at_1625.
That will be useful for diffing & checking on my stupidity.

Here is a list of the conflicts and their resolution at this
point in time.


=================================================================================
(LLWS == looks like white space).

finley/src/Assemble_addToSystemMatrix.c - resolve to branch - unused var. may be wrong.....
finley/src/CPPAdapter/SystemMatrixAdapter.cpp - resolve to branch - LLWS
finley/src/CPPAdapter/MeshAdapter.cpp - resolve to branch - LLWS
paso/src/PCG.c - resolve to branch - unused var fixes.
paso/src/SolverFCT.c - resolve to branch - LLWS
paso/src/FGMRES.c - resolve to branch - LLWS
paso/src/Common.h - resolve to trunk version. It's omp.h's include... not sure it's needed,
but for the sake of saftey.....
paso/src/Functions.c - resolve to branch version, indentation/tab removal and return error
on bad unimplemented Paso_FunctionCall.
paso/src/SolverFCT_solve.c - resolve to branch version, unused vars
paso/src/SparseMatrix_MatrixVector.c - resolve to branch version, unused vars.
escript/src/Utils.cpp - resloved to branch, needs WinSock2.h
escript/src/DataExpanded.cpp - resolved to branch version - LLWS
escript/src/DataFactory.cpp - resolve to branch version
=================================================================================

This currently passes tests on linux (debian), but is not checked on windows or Altix yet.

This checkin is to make a trunk I can check out for windows to do tests on it.

Known outstanding problem is in the operator=() method of exceptions
causing warning messages on the intel compilers.

May the God of doughnuts have mercy on my soul.



Revision 1620 - Directory Listing
Modified Fri Jun 27 02:30:18 2008 UTC (9 years, 5 months ago) by ksteube
Original Path: trunk/scons
Included more MPI configuration options on Savanna


Revision 1618 - Directory Listing
Modified Tue Jun 24 01:16:40 2008 UTC (9 years, 5 months ago) by ksteube
Original Path: trunk/scons
Trying to get documentation builds going again after reinstalling my desktop OS


Revision 1579 - Directory Listing
Modified Mon Jun 2 08:48:36 2008 UTC (9 years, 6 months ago) by ksteube
Original Path: trunk/scons
Fix typo in PCG.c
Improvement of build options for Savanna, ac.apac.edu, shake71


Revision 1569 - Directory Listing
Modified Sat May 24 04:51:38 2008 UTC (9 years, 6 months ago) by ksteube
Original Path: trunk/scons
Config for new installation at APAC with offscreen rendering


Revision 1568 - Directory Listing
Modified Sat May 24 03:15:08 2008 UTC (9 years, 6 months ago) by ksteube
Original Path: trunk/scons
Some testing on ac.apac.edu.au, more work needed
New pyvisi example offscreen.py for offscreen rendering


Revision 1567 - Directory Listing
Modified Thu May 22 22:52:41 2008 UTC (9 years, 6 months ago) by ksteube
Original Path: trunk/scons
scons all_tests passes on Savanna with OMP=1 and OMP=4.
New boost for Savanna.
A few more cases of #s -> %s.


Revision 1561 - Directory Listing
Modified Wed May 21 06:58:52 2008 UTC (9 years, 6 months ago) by ksteube
Original Path: trunk/scons
Added python method printParallelThreadCounts() to tell how many MPI CPUs and OpenMP threads we are using (for testing hybrid runs)


Revision 1560 - Directory Listing
Modified Wed May 21 05:55:30 2008 UTC (9 years, 6 months ago) by ksteube
Original Path: trunk/scons
Improvements to Savanna configuration


Revision 1559 - Directory Listing
Modified Wed May 21 04:27:15 2008 UTC (9 years, 6 months ago) by ksteube
Original Path: trunk/scons
Compiles and runs on Savanna (hostname service0)


Revision 1459 - Directory Listing
Modified Thu Mar 27 01:49:10 2008 UTC (9 years, 8 months ago) by ksteube
Original Path: trunk/scons
Implemented ParMETIS for mesh partition optimization under MPI.
Documented optimize=True in User Guide for Brick() and Rectangle().


Revision 1458 - Directory Listing
Modified Mon Mar 3 23:42:06 2008 UTC (9 years, 9 months ago) by ksteube
Original Path: trunk/scons
Added config file for virtual machine with hostname 'vm_system'


Revision 1427 - Directory Listing
Modified Wed Feb 27 07:54:48 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk/scons
brought from the windows port branch. Should make no difference to *nix's

Revision 1412 - Directory Listing
Modified Fri Feb 8 04:46:10 2008 UTC (9 years, 10 months ago) by ksteube
Original Path: trunk/scons
Updated configuration for ac.apac.edu.au


Revision 1403 - Directory Listing
Modified Thu Jan 31 04:17:38 2008 UTC (9 years, 10 months ago) by ksteube
Original Path: trunk/scons
Added configuration options for VM to give it access to NetCDF


Revision 1388 - Directory Listing
Modified Fri Jan 11 07:45:58 2008 UTC (9 years, 11 months ago) by trankine
Original Path: trunk/scons
And get the *(&(*&(* name right

Revision 1387 - Directory Listing
Modified Fri Jan 11 07:45:26 2008 UTC (9 years, 11 months ago) by trankine
Original Path: temp/scons
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

Revision 1384 - Directory Listing
Modified Fri Jan 11 02:29:38 2008 UTC (9 years, 11 months ago) by phornby
Original Path: temp_trunk_copy/scons
Make a temp copy of the trunk before checking in the windows changes



Revision 1383 - Directory Listing
Modified Thu Jan 10 06:48:28 2008 UTC (9 years, 11 months ago) by phornby
Original Path: trunk/scons
Link to the latest boost.



Revision 1380 - Directory Listing
Modified Wed Jan 9 04:26:03 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/scons
some info about the modules to be used

Revision 1374 - Directory Listing
Modified Tue Jan 8 09:37:55 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/scons
some changes to get things going on the cognac.ivec.org.

Revision 1373 - Directory Listing
Modified Mon Jan 7 05:32:25 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/scons
on ess: link against python 2.4.3 now.

Revision 1356 - Directory Listing
Modified Thu Nov 29 05:48:33 2007 UTC (10 years ago) by poulet
Original Path: trunk/scons
* moved to python 2.4 to python 2.5

Revision 1336 - Directory Listing
Modified Fri Nov 2 06:48:47 2007 UTC (10 years, 1 month ago) by poulet
Original Path: trunk/scons
Chris Hines successfully modified this file to build escript on Cognac using:
* python/2.4.2
* intel-cc/10.0.023
* boost/1.33.1/python2.4.2/icc10.0.023
* netcdf/3.6.2
* intel-mkl
* scsl
* numarray/1.5.2


Revision 1333 - Directory Listing
Modified Tue Oct 23 03:30:15 2007 UTC (10 years, 1 month ago) by matt
Original Path: trunk/scons
scons configuration file for shake45.


Revision 1331 - Directory Listing
Modified Tue Oct 23 00:42:15 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk/scons
ArithmeticTuple added. It is useful for certain applications of PCG

Revision 1329 - Directory Listing
Modified Thu Oct 18 05:39:25 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/scons
Can now compile with openmp on cyclone. Had to fix a bug in scons in intelc.py
to allow use of Intel compilers.


Revision 1322 - Directory Listing
Modified Thu Sep 27 04:40:43 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/scons
Code now compiles and runs on cyclone.hpcu.uq.edu.au.
Had to remove intelc from the SConstruct, but didn't commit that change.
Changed a couple C++ comments to C comments.


Revision 1312 - Directory Listing
Modified Mon Sep 24 06:18:44 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/scons
The MPI branch is hereby closed. All future work should be in trunk.

Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.


Revision 1310 - Directory Listing
Modified Mon Sep 24 04:00:47 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/scons
A few additions to make trunk match trunk-mpi-branch


Revision 1250 - Directory Listing
Modified Thu Aug 16 02:54:42 2007 UTC (10 years, 4 months ago) by ksteube
Original Path: trunk/scons
Minor repairs to scons files


Revision 1245 - Directory Listing
Modified Mon Aug 13 14:27:20 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk/scons
Add in the netcdf libraries.

Revision 1242 - Directory Listing
Modified Mon Aug 13 06:45:41 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk/scons
Update for the new SConstruct

Revision 1241 - Directory Listing
Modified Mon Aug 13 06:41:05 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk/scons
New options for the default windows + MSC combination.

Revision 1240 - Directory Listing
Modified Mon Aug 13 06:39:29 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk/scons
query python_cmd in env to get the python command.

Revision 1234 - Directory Listing
Modified Mon Aug 13 00:22:25 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk/scons
Based on http://www.scons.org/wiki/DoxygenBuilder, this is a useful tool for managing doxygen builds.

Revision 1233 - Directory Listing
Modified Mon Aug 13 00:20:22 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk/scons
Much more extensive extensions that can make SConscripts much shorter.

Revision 1232 - Directory Listing
Modified Fri Aug 10 06:44:04 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk/scons
Reduce the number of IS_WINDOWS_PLATFORM references in SConstruct.
Change path to boost etc in windows_mscv71_options.py 
Some of these changes are present in windows_mscv71_options.py, more changes needed once I get the mscv71 build going properly.

Revision 1215 - Directory Listing
Modified Thu Jul 12 01:14:55 2007 UTC (10 years, 5 months ago) by ksteube
Original Path: trunk/scons
Repaired all targets for: scons docs
It runs all these targets: release_examples guide_pdf api_epydoc api_doxygen


Revision 1186 - Directory Listing
Modified Fri Jun 1 03:26:23 2007 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/scons
More mods to compile options for ac.apac.edu.au


Revision 1184 - Directory Listing
Modified Thu May 31 04:28:37 2007 UTC (10 years, 6 months ago) by matt
Original Path: trunk/scons
Fixed netCDF compile option.


Revision 1175 - Directory Listing
Modified Wed May 30 03:51:11 2007 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/scons
Adjustments for ac.apac.edu.au paths


Revision 1160 - Directory Listing
Modified Wed May 23 00:44:01 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/scons
The OMP_NUM_THREADS environment variable is now imported into the scons evironment.

Revision 1139 - Directory Listing
Modified Mon May 14 05:12:53 2007 UTC (10 years, 7 months ago) by ksteube
Original Path: trunk/scons
Finished renaming of boost_lib to boost_libs and boost_lib_path to boost_libs_path.


Revision 1133 - Directory Listing
Modified Tue May 8 07:19:33 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/scons
Changes needed for windows. This still does not work on and has not run on linux and the altix. 
 
There are a few changes in names in the scons script, in particular _libs is used rather than _lib and _libs is always a list. By default on windows MSVC is used. The location of python is at C:\Program Files\python<version>, boost at C:\Program Files\boost and netcdf at C:\Program Files\netcdf. 

 

Revision 1132 - Directory Listing
Modified Tue May 8 05:58:46 2007 UTC (10 years, 7 months ago) by phornby
Original Path: trunk/scons
c flags to suppress pragma warnings

Revision 1041 - Directory Listing
Modified Fri Mar 16 09:11:10 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/scons
Change the netcdf path options to reflect the svn controlled netcdf path.



Revision 1040 - Directory Listing
Modified Fri Mar 16 08:43:08 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/scons
Now links against netcdf and netcdf_cpp on windows.



Revision 1036 - Directory Listing
Modified Fri Mar 16 04:55:44 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/scons
msvc7.1 options file for windows.



Revision 1033 - Directory Listing
Modified Wed Mar 14 08:38:00 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/scons
Options for the IVEC SGI altix.



Revision 1025 - Directory Listing
Modified Tue Mar 13 08:02:12 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/scons
More windows options.



Revision 1019 - Directory Listing
Modified Mon Mar 12 10:04:54 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/scons
More windows options changes.



Revision 1018 - Directory Listing
Modified Mon Mar 12 07:36:36 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/scons
Make Name consistent.



Revision 1017 - Directory Listing
Modified Mon Mar 12 07:35:46 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/scons
Windows options files.



Revision 991 - Directory Listing
Modified Wed Feb 21 07:27:15 2007 UTC (10 years, 9 months ago) by matt
Original Path: trunk/scons
Changes to link against NetCDF/3.6.1 module installation with linkage and
compilation consistent with other libraries currently dynamically
linked. Unaligned access error appears linked to escript implementation and
NetCDF/3.6.1 module tests for 64bit file access pass. This module differs from
the previous module as assertions are disabled and compiler optimisation is
invoked _without_ symbol table/lookup.


Revision 990 - Directory Listing
Modified Wed Feb 21 04:27:52 2007 UTC (10 years, 9 months ago) by ksteube
Original Path: trunk/scons
Cleaned up the python in-line doc to make epydoc work better

Configured for shake71 to find NetCDF libraries


Revision 971 - Directory Listing
Modified Wed Feb 14 04:40:49 2007 UTC (10 years, 10 months ago) by ksteube
Original Path: trunk/scons
Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.



Revision 970 - Directory Listing
Modified Wed Feb 14 03:46:01 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk/scons
modified some files.



Revision 969 - Directory Listing
Modified Tue Feb 13 23:02:23 2007 UTC (10 years, 10 months ago) by ksteube
Original Path: trunk/scons
Parallelization using MPI for solution of implicit problems.

Parallelization for explicit problems has already been accomplished in
the main SVN branch.

This is incomplete and is not ready for use.



Revision 951 - Directory Listing
Modified Wed Feb 7 05:26:13 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/scons
fixes to get netcdf going on the altix

Revision 950 - Directory Listing
Modified Tue Feb 6 07:01:11 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/scons
escript data objects can now be saved to netCDF files, see http://www.unidata.ucar.edu/software/netcdf/.
Currently only constant data are implemented with expanded and tagged data to follow.
There are two new functions to dump a data object

   s=Data(...)
   s.dump(<filename>)

and to recover it

   s=load(<filename>, domain)

Notice that the function space of s is recovered but domain is still need. 

dump and load will replace archive and extract.

The installation needs now the netCDF installed. 



Revision 929 - Directory Listing
Modified Wed Jan 17 07:41:13 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk/scons
reverse orientation added but does not work for 2D yet.

Revision 913 - Directory Listing
Modified Tue Dec 12 01:21:00 2006 UTC (11 years ago) by matt
Original Path: trunk/scons
The serial version still requires linking to OpenMP .so's. The cause is
likely an explicit use of the OpenMP api which is unguarded in escript/finley
or in a third-party library.


Revision 876 - Directory Listing
Modified Thu Oct 19 03:50:23 2006 UTC (11 years, 2 months ago) by ksteube
Original Path: trunk/scons
Added erf (error function) implementation


Revision 869 - Directory Listing
Modified Fri Oct 13 03:48:29 2006 UTC (11 years, 2 months ago) by phornby
Original Path: trunk/scons
Add some example options files people can copy and modify for their node.



Revision 864 - Directory Listing
Modified Wed Oct 4 01:26:18 2006 UTC (11 years, 2 months ago) by matt
Original Path: trunk/scons
I have further refined the choice of libraries for the serial build. The
correct serial MKL libraries are still unknown.


Revision 863 - Directory Listing
Modified Wed Oct 4 01:01:15 2006 UTC (11 years, 2 months ago) by matt
Original Path: trunk/scons
Added serial execution build options for running on the altix. In doing so, a
minor bug in SConstruct was found and fixed. The correct libraries still need
to be sorted after consulting Lutz and/or Ken.


Revision 853 - Directory Listing
Modified Wed Sep 20 05:56:36 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/scons
some performance problems wit openmp fixed.

Revision 817 - Directory Listing
Modified Sat Aug 26 03:08:52 2006 UTC (11 years, 3 months ago) by ksteube
Original Path: trunk/scons
Can now compile and run with MPI on shake71



Revision 808 - Directory Listing
Modified Fri Aug 11 01:25:16 2006 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/scons
Can now build escript and use doxygen on shake71



Revision 805 - Directory Listing
Modified Thu Aug 10 06:09:02 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk/scons
first steps toward UMFPACK

Revision 790 - Directory Listing
Modified Wed Jul 26 23:12:34 2006 UTC (11 years, 4 months ago) by bcumming
Original Path: trunk/scons
changes to escript/py_src/pdetools.py and /escript/src/Data.h/.cpp to
make the Locator work in MPI. escript::Data::mindp now returns a 3 tuple,
with the MPI rank of the process on which the minimum value occurs
included. escript::Data::convertToNumArrayFromDPNo also takes the ProcNo
to perform the MPI reduction.

This had to be implemented in both the MPI and non-MPI versions to allow
the necesary changes to the Python code in pdetools.py. In the non-MPI
version ProcNo is set to 0. This works for the explicit scripts tested
thus far, however if it causes problems in your scripts contact Ben or
Lutz, or revert the three files (pdetools.py, Data.h and Data.cpp) to
the previous version.  



Revision 782 - Directory Listing
Modified Tue Jul 18 00:47:47 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk/scons
Large number of changes to Finley for meshing in MPI.

- optimisation and neatening up of rectcanglular mesh generation code
- first and second order 1D, 2D and 3D rectangular meshes are now
  available in finley and escript using MPI.
- reduced meshes now generated in MPI, and interpolation to and from 
  reduced data types now supported.  


Revision 780 - Directory Listing
Modified Fri Jul 14 07:46:07 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk/scons
+ Removed nelix_kb_options.py since I no longer have that notebook and as a result it isn't a maintained example of a win32 configuration. coleto_kb_options.py is my new notebooks configuration. Note that this particular set of compilation options target the Core Duo processor (and family relations) and as such won't work on other x86 platforms that don't have the same feature set. See the Intel compiler guide for details on how to target other processors.

Revision 779 - Directory Listing
Modified Fri Jul 14 07:41:31 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk/scons
+ Updated compilation options for Cognac to squeeze out a bit more performance
+ Now compiles using the Intel Math headers (mathimf.h) rather than plain math.h on both Win32 and Linux platforms when using the Intel compiler. Gives a small boost to performance on Altix and is essential on Windows



Revision 776 - Directory Listing
Modified Wed Jul 12 00:07:31 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/scons
basic code for persistence of jacobeans added. routines are not called yet

Revision 774 - Directory Listing
Modified Mon Jul 10 02:00:55 2006 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk/scons
Modified nightly testing:
	Tests run as batch job via cron
	You can choose to run run_tests or all_tests via command-line argument
	They use 2 CPUs for run_tests and 4 CPUs for all_tests
	Log files from tests are saved in /raid3/ksteube/AutoTests/Logs


Revision 763 - Directory Listing
Modified Fri Jun 30 05:52:31 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/scons
some modification in the element reordering which should solve some problems 
caused by the fact that qsort may handels == items differently on different platform.



Revision 761 - Directory Listing
Modified Fri Jun 30 00:07:21 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk/scons
- removed the need to uncomment #define PASO_MPI when building MPI
  version, now passed as an argument to the compiler.


Revision 760 - Directory Listing
Modified Thu Jun 29 05:36:08 2006 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk/scons
Added a timer so we can see how long each test takes to run.



Revision 759 - Directory Listing
Modified Thu Jun 29 01:53:23 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk/scons
- added directory pythonMPI to the source tree. this directory contains
  the c++ wrapper that is used to run python scripts in parallel for the
  MPI version of escript/finley
- updated the SConstruct and ./scons/ess_options.py for conditional MPI
  compilation. To compile the MPI version on ESS uncomment the #define
  PASO_MPI in ./paso/src/Paso.h and add the command line option
  useMPI=yes when running scons.
- fixed a compile time error in the MPI build in  
  finley/src/CPPAdapter/MeshAdapterFactory.cpp 
     


Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk/scons
+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)


Revision 751 - Directory Listing
Modified Mon Jun 26 01:46:34 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk/scons
Changes relating to the MPI version of escript
The standard OpenMP version of escript is unchanged

- updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes
  over multiple MPI processes.
- added CommBuffer code in Paso for communication of Data associated
  with distributed meshes
- updates in Finley and Escript to support distributed data and operations
  on distributed data (such as interpolation).
- construction of RHS in MPI, so that simple explicit schemes (such as
  /docs/examples/wave.py without IO and the Locator) can run in MPI.
- updated mesh generation for first order line, rectangle and brick
  meshes and second order line meshes in MPI.        
- small changes to trunk/SConstruct and trunk/scons/ess_options.py to
  build the MPI version, these changes are turned off by default.


Revision 741 - Directory Listing
Modified Thu Jun 22 03:36:04 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk/scons
+ Added {inc,py,lib}install paths so that when escript builds on ac it installs the build into /home/escript/escript-<put a revision number here>. That way you can just copy this directory into /opt of wherever for someone to install into ac.


Revision 740 - Directory Listing
Modified Thu Jun 22 03:23:05 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk/scons
+ Options to build on APAC NF ac machine modified to use /home/escript build area. escript builds using its own version of boost and python2.4.3 (and scons for that matter) in this directory rather than using the APAC NF installations. This eases APAC's module management where different groups want slightly different configurations for various modules.


Revision 738 - Directory Listing
Modified Sat Jun 17 06:00:19 2006 UTC (11 years, 6 months ago) by matt
Original Path: trunk/scons
ess_options.py is updated and synchronised with the esys/env module. In turn, this module is used to build and setup the user environments of esys/current and esys/current-debug.


Revision 735 - Directory Listing
Modified Wed Jun 14 02:09:21 2006 UTC (11 years, 6 months ago) by ksteube
Original Path: trunk/scons
Removed -ansi_alias compiler option to icpc. It was causing the compiler
to optimize away the default constructor DataAbstract::DataAbstract and
breaking the tests.



Revision 732 - Directory Listing
Modified Fri Jun 9 05:26:48 2006 UTC (11 years, 6 months ago) by woo409
Original Path: trunk/scons
+ First cut at build environment for Finley on the APAC National Facility (AC) machine



Revision 722 - Directory Listing
Modified Mon May 1 11:49:18 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk/scons
abstract added in users guide added

Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/scons
latex build documentation is working now

Revision 700 - Directory Listing
Modified Thu Apr 6 00:13:40 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/scons
A few changes in the build mechanism and the file structure so scons can build release tar files:

  * paso/src/Solver has been moved to paso/src 
  * all test_.py are now run_.py files and are assumed to be passing python tests. they can run by 
    scons py_tests and are part of the release test set
  * escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory 
    (rather then the PYTHONPATH).
  * all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i
    by not run automatically.
  * CppUnitTest is now treated as a escript module (against previous decisions).
  * scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files)

the python tests don't pass yet due to path problems.



Revision 694 - Directory Listing
Modified Thu Mar 30 11:35:55 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/scons
pyvisi builds now. tests still to be fixed.

Revision 691 - Directory Listing
Modified Wed Mar 29 03:43:36 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk/scons
+ Fixed incorrect target path in SConstruct file
+ cognac now links with g++ compiled boost rather than intelc compiled boost due to compilation errors with intel c. (Finley will still compile and work with intel c though) - this is the same configuration as the access altix


Revision 689 - Directory Listing
Modified Tue Mar 28 07:16:54 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk/scons
+ cognac now uses installed boost libraries rather than the ones in woo409's home directory


Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk/scons
+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3



Revision 645 - Directory Listing
Modified Fri Mar 24 01:10:42 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk/scons
More copyright.


Revision 619 - Directory Listing
Modified Wed Mar 22 04:49:24 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/scons
non letter and non digital in hostname ar ereplaced by _ now

Revision 591 - Directory Listing
Modified Mon Mar 13 02:05:54 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/scons
papi switched off on altix

Revision 584 - Directory Listing
Modified Thu Mar 9 23:03:38 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/scons
eigenvalues: compiles and passes tests on altix now

Revision 551 - Directory Listing
Modified Wed Feb 22 02:59:25 2006 UTC (11 years, 9 months ago) by robwdcock
Original Path: trunk/scons
Scons build options for cognac.ivec.org using intel v9.0.026 compilers
Note: Boost is currently not available as a module on cognac. As a result the boost directories used in this build point to my specific boost installation which should be visible to all ivec users. This will get fixed eventually. 


Revision 550 - Directory Listing
Modified Wed Feb 22 02:14:38 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/scons
more tests on slicing

Revision 487 - Directory Listing
Modified Thu Feb 2 06:16:30 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/scons
define epydoc PYTHONPATH setting

Revision 486 - Directory Listing
Modified Thu Feb 2 05:23:44 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/scons
define locations of doxygen/epydoc executables

Revision 481 - Directory Listing
Modified Wed Feb 1 05:57:50 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/scons
add mechanism to install .h files to inc directories
(still need to specify full lists of .h files to install)


Revision 457 - Directory Listing
Modified Tue Jan 24 06:13:03 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/scons
fix installation to directories specified by pyinstall and libinstall


Revision 456 - Directory Listing
Modified Tue Jan 24 04:38:50 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/scons
minor formatting changes


Revision 455 - Directory Listing
Modified Tue Jan 24 04:36:54 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/scons
minor comment and formatting changes


Revision 427 - Directory Listing
Modified Tue Jan 10 04:24:07 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/scons
typo fixed

Revision 426 - Directory Listing
Modified Tue Jan 10 04:17:43 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/scons
some commends added


Revision 425 - Directory Listing
Modified Tue Jan 10 04:10:39 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/scons
The sparse solver can be called by paso now. 

the building has been change to reduce some code redundancy:
now all scons SCscripts are importing scons/esys_options.py which
imports platform specific settings. 




Revision 370 - Directory Listing
Modified Fri Dec 16 00:52:34 2005 UTC (12 years ago) by cochrane
Original Path: trunk/scons
Updated to allow for building of API documentation.


Revision 368 - Directory Listing
Modified Thu Dec 15 23:23:12 2005 UTC (12 years ago) by gross
Original Path: trunk/scons
and a bit more on version detection

Revision 367 - Directory Listing
Modified Thu Dec 15 22:55:46 2005 UTC (12 years ago) by gross
Original Path: trunk/scons
include file for python is now detected

Revision 360 - Directory Listing
Modified Thu Dec 15 01:52:16 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
add target to run all unit tests, the build will fail
for this target if any unit test fails


Revision 359 - Directory Listing
Modified Thu Dec 15 01:08:03 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
runUnitTest now returns an error code if the test fails


Revision 309 - Directory Listing
Modified Mon Dec 5 01:59:58 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
now load default options - by default!


Revision 297 - Directory Listing
Modified Fri Dec 2 04:57:48 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
bruce tests cases are now automatically run whenever they are rebuilt


Revision 268 - Directory Listing
Modified Wed Nov 30 01:39:47 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
setup scons configuration to make and install python code


Revision 267 - Directory Listing
Modified Wed Nov 30 01:13:10 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
fixed typo in options string


Revision 258 - Directory Listing
Modified Tue Nov 29 06:43:14 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
add options file for the prism (not tested yet)


Revision 257 - Directory Listing
Modified Tue Nov 29 06:23:50 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
fixed specification of solver libs


Revision 256 - Directory Listing
Modified Tue Nov 29 06:22:53 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
fixed specification of solver libs


Revision 255 - Directory Listing
Modified Tue Nov 29 06:13:22 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
pass in solver libraries to link with via options files now

Revision 254 - Directory Listing
Modified Tue Nov 29 06:12:55 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
another alternative options file


Revision 252 - Directory Listing
Modified Tue Nov 29 05:58:03 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
pass in platform specific libraries via options files now


Revision 249 - Directory Listing
Modified Tue Nov 29 05:29:09 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
fix compiler options to enable compilation on gcc platforms

Revision 245 - Directory Listing
Modified Tue Nov 29 02:11:05 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
added some comments and reasonable default values

Revision 243 - Directory Listing
Modified Mon Nov 28 06:36:40 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
add a default options file - basis for other custom options files


Revision 238 - Directory Listing
Modified Mon Nov 28 05:33:38 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
fix quoting of library names


Revision 237 - Directory Listing
Modified Mon Nov 28 05:26:43 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
first draft of options file for gcc platforms


Revision 236 - Directory Listing
Modified Mon Nov 28 05:25:35 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
add names of python and boost libraries to config file


Revision 226 - Directory Listing
Modified Fri Nov 25 01:40:04 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
import compile options into bruce unit test builds from options file now


Revision 225 - Directory Listing
Modified Fri Nov 25 01:22:34 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
pass in correct options to archiver for static libraries

Revision 224 - Directory Listing
Modified Fri Nov 25 00:33:27 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
implement switching of debug compiler options based on command line flag 'debug'

Revision 223 - Directory Listing
Modified Thu Nov 24 23:12:13 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
pass in cc/cxx settings from config file

Revision 216 - Directory Listing
Modified Thu Nov 24 06:35:14 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
first pass at importing compile options from an external file'


Revision 215 - Directory Listing
Added Thu Nov 24 06:25:15 2005 UTC (12 years ago) by jgs
Original Path: trunk/scons
added directory and first draft file to hold options settings
for different configurations (debug/nodebug, host, etc)


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