[escript] Log of /branches/trunk-mpi-branch/modellib

Revision 1320 - Directory Listing
Modified Thu Sep 27 00:51:32 2007 UTC (13 years, 6 months ago) by ksteube

Moved trunk-mpi-branch into the branches subdirectory where it belongs

Revision 1306 - Directory Listing
Modified Tue Sep 18 05:51:09 2007 UTC (13 years, 7 months ago) by ksteube
Original Path: trunk-mpi-branch/modellib

New Copyright in each .c .h .cpp and .py file

Revision 1295 - Directory Listing
Modified Mon Sep 10 06:07:09 2007 UTC (13 years, 7 months ago) by ksteube
Original Path: trunk-mpi-branch/modellib

Have now merged latest trunk features into MPI branch in preparation for
ending the MPI branch.
Compiles but has run time problems in bandwith reduction.

Revision 1269 - Directory Listing
Modified Wed Aug 22 08:55:03 2007 UTC (13 years, 8 months ago) by ksteube
Original Path: trunk-mpi-branch/modellib

Most of the tests pass now when compiled without -DPASO_MPI.
Resolved all compiler warnings except one.

Revision 1140 - Directory Listing
Modified Tue May 15 03:23:17 2007 UTC (13 years, 11 months ago) by ksteube
Original Path: trunk-mpi-branch/modellib

MPI branch trunk-mpi-branch has been merged with trunk through revision
1125, so changes in trunk since 1125 are not reflected in
trunk-mpi-branch.

Originally we parallelized revision 989, but after this merge it's
as if we'd parallelized revision 1125.

run_simplesolve.py runs on 1, 2, 4 CPUs.

Revision 968 - Directory Listing
Modified Tue Feb 13 22:56:57 2007 UTC (14 years, 2 months ago) by ksteube
Original Path: trunk-mpi-branch/modellib

Branch for MPI solution of implicit problems

Revision 953 - Directory Listing
Modified Fri Feb 9 08:55:28 2007 UTC (14 years, 2 months ago) by gross
Original Path: trunk/modellib

TagMap is supported by modellib now

Revision 950 - Directory Listing
Modified Tue Feb 6 07:01:11 2007 UTC (14 years, 2 months ago) by gross
Original Path: trunk/modellib

escript data objects can now be saved to netCDF files, see http://www.unidata.ucar.edu/software/netcdf/.
Currently only constant data are implemented with expanded and tagged data to follow.
There are two new functions to dump a data object

   s=Data(...)
   s.dump(<filename>)

and to recover it

   s=load(<filename>, domain)

Notice that the function space of s is recovered but domain is still need. 

dump and load will replace archive and extract.

The installation needs now the netCDF installed.

Revision 944 - Directory Listing
Modified Tue Jan 30 08:57:37 2007 UTC (14 years, 2 months ago) by gross
Original Path: trunk/modellib

PropertySet added

Revision 941 - Directory Listing
Modified Mon Jan 29 04:07:58 2007 UTC (14 years, 2 months ago) by gross
Original Path: trunk/modellib

small fix

Revision 938 - Directory Listing
Modified Thu Jan 25 03:40:54 2007 UTC (14 years, 2 months ago) by gross
Original Path: trunk/modellib

the FinleyReade accepts now gmsh files (use format="gmsh")
and
Simulations are accepting Models only. Moreover, there is a test now
if a all Models targeted by a model in the simulation or a subsimulation
are included in  simulation or a subsimulation.

Revision 927 - Directory Listing
Modified Fri Jan 12 06:32:08 2007 UTC (14 years, 3 months ago) by gross
Original Path: trunk/modellib

surfaces implemented by no testing yet

Revision 918 - Directory Listing
Modified Wed Jan 3 06:30:00 2007 UTC (14 years, 3 months ago) by gross
Original Path: trunk/modellib

fixes on ESySXML to get runmodel going.

    * object ids are now local for read and write of XML
    * ParameterSets are now written with class name
    * ParameterSets linked by other ParameterSets (previously only Models) are written now 
    * list are now lists of str (rather than bools), lists with bool, int or float are mapped to numarray
    * numarray are writen with generic types Bool, Int, Float (portability!)

Revision 917 - Directory Listing
Modified Tue Jan 2 02:46:53 2007 UTC (14 years, 3 months ago) by gross
Original Path: trunk/modellib

some EsysXML input files. rebuild still fails for these files

Revision 912 - Directory Listing
Modified Wed Dec 6 03:29:49 2006 UTC (14 years, 4 months ago) by gross
Original Path: trunk/modellib

modellib.WriteVTK has been rewritten. Instead of only three data objects scalar,
vector, tensor it takes now up to 20 data objects data0 ... data19 and writes it into a 
single VTK file. There is also the possibilty to define individiual name tags name0,..., name19.
If no name is given the corresponding attribute name of the Link target is used. 
This simplifies the usage and increases efficiency.

Revision 911 - Directory Listing
Modified Tue Dec 5 23:39:39 2006 UTC (14 years, 4 months ago) by gross
Original Path: trunk/modellib

*Constrainer models have been renamed to *ConstrainerOverBox to clarify the fact that they are only work over a box domain

Revision 908 - Directory Listing
Modified Thu Nov 23 06:39:39 2006 UTC (14 years, 4 months ago) by gross
Original Path: trunk/modellib

some fixes

Revision 906 - Directory Listing
Modified Tue Nov 21 05:34:15 2006 UTC (14 years, 5 months ago) by gross
Original Path: trunk/modellib

some minor fixes

Revision 904 - Directory Listing
Modified Fri Nov 17 08:49:44 2006 UTC (14 years, 5 months ago) by gross
Original Path: trunk/modellib

MergeConstraints added

Revision 903 - Directory Listing
Modified Fri Nov 17 01:59:49 2006 UTC (14 years, 5 months ago) by gross
Original Path: trunk/modellib

bug with tagged data in vtk and dx writer fixed

Revision 885 - Directory Listing
Modified Wed Nov 1 09:05:51 2006 UTC (14 years, 5 months ago) by gross
Original Path: trunk/modellib

DataSource for modelib added

Revision 872 - Directory Listing
Modified Sun Oct 15 23:33:14 2006 UTC (14 years, 6 months ago) by gross
Original Path: trunk/modellib

bla

Revision 850 - Directory Listing
Modified Sun Sep 17 23:27:00 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

some problems with vtk writer fixed

Revision 841 - Directory Listing
Modified Wed Sep 6 09:48:37 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

drucker-prager is working but I am not entirely happy yet as the step size control is very tight.

Revision 838 - Directory Listing
Modified Tue Sep 5 22:45:55 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

drucker prager works now but there is still some work on the stepsize control needed.

Revision 836 - Directory Listing
Modified Mon Sep 4 22:37:25 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

new implementation of the tangential operator and a restriction of time step size change added

Revision 834 - Directory Listing
Modified Fri Sep 1 09:05:16 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

chenges to drucker-prager

Revision 832 - Directory Listing
Modified Fri Sep 1 02:04:46 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

almost there

Revision 831 - Directory Listing
Modified Thu Aug 31 08:47:40 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

some more work to get the drucker-prager going

Revision 829 - Directory Listing
Modified Thu Aug 31 01:31:15 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

some changes on the drucker-prager (it does not work yet)

Revision 826 - Directory Listing
Modified Tue Aug 29 09:12:33 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

ken and I did not have a good afternoon. our checkin was very buggy. fixed

Revision 825 - Directory Listing
Modified Tue Aug 29 06:59:27 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

and more on Drucker Prager

Revision 823 - Directory Listing
Modified Tue Aug 29 02:05:59 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

geometry.py is back to the way it was.

Revision 821 - Directory Listing
Modified Mon Aug 28 08:36:30 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

and some more work on drucker-prager

Revision 820 - Directory Listing
Modified Mon Aug 28 06:55:36 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

make the modelframe test run

Revision 819 - Directory Listing
Modified Sun Aug 27 23:07:51 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

new version of FinleyReader etc. They can noe update node coordinates but have to be part of the Simulation

Revision 816 - Directory Listing
Modified Thu Aug 24 00:03:01 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/modellib

drucker prager in modellib (it does not work yet)

Revision 814 - Directory Listing
Modified Wed Aug 23 09:31:10 2006 UTC (14 years, 8 months ago) by gross
Original Path: trunk/modellib

small bug in general tensor propduct fixed

Revision 798 - Directory Listing
Modified Fri Aug 4 01:05:36 2006 UTC (14 years, 8 months ago) by gross
Original Path: trunk/modellib

Reimplementation of the assemblage with persistent jacobeans.
There are also a few changes to the tests which has now
dramatically reduced the memory demand.

Revision 729 - Directory Listing
Modified Mon May 15 03:16:53 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/modellib

cut down the number of time steps

Revision 728 - Directory Listing
Modified Mon May 15 02:01:18 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/modellib

modelframe test examples work now

Revision 720 - Directory Listing
Modified Thu Apr 27 10:16:05 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/modellib

formatting errors in epydoc tags fixed

Revision 709 - Directory Listing
Modified Wed Apr 26 06:35:36 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/modellib

fixes to get scons py_tests going: mainly fixes in the pathes

Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (15 years ago) by gross
Original Path: trunk/modellib

latex build documentation is working now

Revision 706 - Directory Listing
Modified Sat Apr 8 16:13:02 2006 UTC (15 years ago) by gross
Original Path: trunk/modellib

python tests compile and run but there is still a problem with dependencies'

Revision 705 - Directory Listing
Modified Fri Apr 7 17:57:37 2006 UTC (15 years ago) by gross
Original Path: trunk/modellib

python tests are allmost working

Revision 703 - Directory Listing
Modified Thu Apr 6 02:20:47 2006 UTC (15 years ago) by gross
Original Path: trunk/modellib

some missing files

Revision 700 - Directory Listing
Modified Thu Apr 6 00:13:40 2006 UTC (15 years ago) by gross
Original Path: trunk/modellib

A few changes in the build mechanism and the file structure so scons can build release tar files:

  * paso/src/Solver has been moved to paso/src 
  * all test_.py are now run_.py files and are assumed to be passing python tests. they can run by 
    scons py_tests and are part of the release test set
  * escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory 
    (rather then the PYTHONPATH).
  * all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i
    by not run automatically.
  * CppUnitTest is now treated as a escript module (against previous decisions).
  * scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files)

the python tests don't pass yet due to path problems.

Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (15 years ago) by robwdcock
Original Path: trunk/modellib

+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3

Revision 643 - Directory Listing
Modified Fri Mar 24 00:28:41 2006 UTC (15 years, 1 month ago) by elspeth
Original Path: trunk/modellib

More copyright info added.

Revision 628 - Directory Listing
Modified Thu Mar 23 02:27:57 2006 UTC (15 years, 1 month ago) by elspeth
Original Path: trunk/modellib

Copyright information added.

Revision 490 - Directory Listing
Modified Thu Feb 2 07:07:21 2006 UTC (15 years, 2 months ago) by gross
Original Path: trunk/modellib

tolerance in face detection added

Revision 457 - Directory Listing
Modified Tue Jan 24 06:13:03 2006 UTC (15 years, 2 months ago) by jgs
Original Path: trunk/modellib

fix installation to directories specified by pyinstall and libinstall

Revision 455 - Directory Listing
Modified Tue Jan 24 04:36:54 2006 UTC (15 years, 2 months ago) by jgs
Original Path: trunk/modellib

minor comment and formatting changes

Revision 450 - Directory Listing
Modified Mon Jan 23 05:04:45 2006 UTC (15 years, 2 months ago) by jgs
Original Path: trunk/modellib

remove old make based build system

Revision 425 - Directory Listing
Modified Tue Jan 10 04:10:39 2006 UTC (15 years, 3 months ago) by gross
Original Path: trunk/modellib

The sparse solver can be called by paso now. 

the building has been change to reduce some code redundancy:
now all scons SCscripts are importing scons/esys_options.py which
imports platform specific settings.

Revision 424 - Directory Listing
Modified Tue Jan 10 04:06:58 2006 UTC (15 years, 3 months ago) by gross
Original Path: trunk/modellib

some minor changes

Revision 423 - Directory Listing
Modified Fri Jan 6 08:09:43 2006 UTC (15 years, 3 months ago) by gross
Original Path: trunk/modellib

some modifications in visualization to get equidistant output

Revision 408 - Directory Listing
Modified Fri Dec 23 00:56:56 2005 UTC (15 years, 4 months ago) by cochrane
Original Path: trunk/modellib

Added a check to make sure the vtk file exists.

Revision 407 - Directory Listing
Modified Fri Dec 23 00:45:08 2005 UTC (15 years, 4 months ago) by gross
Original Path: trunk/modellib

bug fixed

Revision 406 - Directory Listing
Modified Fri Dec 23 00:39:59 2005 UTC (15 years, 4 months ago) by gross
Original Path: trunk/modellib

bug fixed

Revision 401 - Directory Listing
Modified Thu Dec 22 06:39:36 2005 UTC (15 years, 4 months ago) by gross
Original Path: trunk/modellib

some new models added

Revision 398 - Directory Listing
Modified Wed Dec 21 07:52:54 2005 UTC (15 years, 4 months ago) by gross
Original Path: trunk/modellib

file reader added

Revision 352 - Directory Listing
Modified Wed Dec 14 02:21:37 2005 UTC (15 years, 4 months ago) by jgs
Original Path: trunk/modellib

turns out Install() targets should also be made Default()
targets if you want them to actually reliably work!

Revision 340 - Directory Listing
Modified Mon Dec 12 05:10:45 2005 UTC (15 years, 4 months ago) by jgs
Original Path: trunk/modellib

pass in pyinstall value from top-level scons script and add
correct suffix in module level scons scipr

Revision 326 - Directory Listing
Modified Wed Dec 7 03:55:19 2005 UTC (15 years, 4 months ago) by cochrane
Original Path: trunk/modellib

Fixed bug with not getting the movie parameter correctly.  Also no longer
cleaning up the movie files if the movie generation failed.

Revision 325 - Directory Listing
Modified Wed Dec 7 02:08:17 2005 UTC (15 years, 4 months ago) by jgs
Original Path: trunk/modellib

now determine hostname via socket.gethostname() as HOSTNAME
environment variable is apparently not set on all platforms

Revision 323 - Directory Listing
Modified Tue Dec 6 06:18:00 2005 UTC (15 years, 4 months ago) by gross
Original Path: trunk/modellib

whereZero methods changed to functions

Revision 309 - Directory Listing
Modified Mon Dec 5 01:59:58 2005 UTC (15 years, 4 months ago) by jgs
Original Path: trunk/modellib

now load default options - by default!

Revision 288 - Directory Listing
Modified Fri Dec 2 01:55:04 2005 UTC (15 years, 4 months ago) by jgs
Original Path: trunk/modellib

now automatically build unit tests as required based on dependencies
between unit tests and libraries

Revision 281 - Directory Listing
Modified Wed Nov 30 09:10:59 2005 UTC (15 years, 4 months ago) by elspeth
Original Path: trunk/modellib

Fixed import problem

Revision 280 - Directory Listing
Modified Wed Nov 30 06:23:59 2005 UTC (15 years, 4 months ago) by cochrane
Original Path: trunk/modellib

Using the tsunami initial amplitude to determine the wave height mapper
scalar range.

Revision 276 - Directory Listing
Modified Wed Nov 30 04:31:40 2005 UTC (15 years, 4 months ago) by cochrane
Original Path: trunk/modellib

Replaced wave grid creation code to load wave grid from file.

Revision 270 - Directory Listing
Modified Wed Nov 30 02:00:26 2005 UTC (15 years, 4 months ago) by elspeth
Original Path: trunk/modellib

Fixed imports

Revision 268 - Directory Listing
Modified Wed Nov 30 01:39:47 2005 UTC (15 years, 4 months ago) by jgs
Original Path: trunk/modellib

setup scons configuration to make and install python code

Revision 264 - Directory Listing
Modified Tue Nov 29 10:06:39 2005 UTC (15 years, 4 months ago) by cochrane
Original Path: trunk/modellib

Removing image files after generation of movie.

Revision 263 - Directory Listing
Modified Tue Nov 29 09:55:16 2005 UTC (15 years, 4 months ago) by cochrane
Original Path: trunk/modellib

Added visualisation of bathymmetry data, the coastline and the wave height
data as per earlier tsunami movies.  Also autogenerates the .params file for
ppmtompeg and generates the movie automatically.

Revision 262 - Directory Listing
Modified Tue Nov 29 07:35:12 2005 UTC (15 years, 4 months ago) by gross
Original Path: trunk/modellib

tsunami added

Revision 259 - Directory Listing
Modified Tue Nov 29 07:14:41 2005 UTC (15 years, 4 months ago) by gross
Original Path: trunk/modellib

some minor fixes

Revision 251 - Directory Listing
Modified Tue Nov 29 05:54:06 2005 UTC (15 years, 4 months ago) by gross
Original Path: trunk/modellib

problems with coordinate axis fixed

Revision 247 - Directory Listing
Modified Tue Nov 29 04:57:38 2005 UTC (15 years, 4 months ago) by gross
Original Path: trunk/modellib

initial checkin

Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (15 years, 5 months ago) by jgs
Original Path: trunk/modellib
Copied from: trunk/esys2/modellib revision 154

move all directories from trunk/esys2 into trunk and remove esys2

Revision 151 - Directory Listing
Modified Thu Sep 22 01:55:00 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/modellib

Merge of development branch dev-02 back to main trunk on 2005-09-22

Revision 150 - Directory Listing
Modified Thu Sep 15 03:44:45 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/modellib

Merge of development branch dev-02 back to main trunk on 2005-09-15

Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/modellib

Merge of development branch dev-02 back to main trunk on 2005-09-01

Revision 148 - Directory Listing
Modified Tue Aug 23 01:24:31 2005 UTC (15 years, 8 months ago) by jgs
Original Path: trunk/esys2/modellib

Merge of development branch dev-02 back to main trunk on 2005-08-23

Revision 147 - Directory Listing
Modified Fri Aug 12 01:45:47 2005 UTC (15 years, 8 months ago) by jgs
Original Path: trunk/esys2/modellib

erge of development branch dev-02 back to main trunk on 2005-08-12

Revision 146 - Directory Listing
Modified Fri Jul 29 01:44:29 2005 UTC (15 years, 8 months ago) by jgs
Original Path: trunk/esys2/modellib

First merge of development branch dev-02 back to main trunk on 2005-07-29

Revision 144 - Directory Listing
Modified Mon Jul 25 05:42:21 2005 UTC (15 years, 8 months ago) by jgs
Original Path: trunk/esys2/modellib

moved form old modellib directory

Revision 141 - Directory Listing
Modified Mon Jul 25 05:15:41 2005 UTC (15 years, 8 months ago) by jgs
Original Path: trunk/esys2/modellib

fixed to work with new python source/install directory structure

Revision 135 - Directory Listing
Modified Fri Jul 22 07:04:52 2005 UTC (15 years, 9 months ago) by jgs
Original Path: trunk/esys2/modellib

makefile for modellib module

Revision 134 - Directory Listing
Modified Fri Jul 22 06:28:49 2005 UTC (15 years, 9 months ago) by jgs
Original Path: trunk/esys2/modellib

added modellib/lib/py_src

Revision 132 - Directory Listing
Modified Fri Jul 22 06:23:18 2005 UTC (15 years, 9 months ago) by jgs
Original Path: trunk/esys2/modellib

.keep file for modellib/lib

Revision 127 - Directory Listing
Added Fri Jul 22 05:11:29 2005 UTC (15 years, 9 months ago) by jgs
Original Path: trunk/esys2/modellib

moved modellib code to esys2/modellib/py_src

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