Log of /branches/windows_from_1456_trunk_1544_merged_in/paso/src
Directory Listing
Revision
1558 -
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Modified
Tue May 20 07:33:49 2008 UTC
(14 years, 10 months ago)
by
ksteube
Windows branch now compiles on UNIX with one warning
Revision
1546 -
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Modified
Thu May 1 07:09:49 2008 UTC
(14 years, 10 months ago)
by
phornby
Copy branch to new name to reflect the new trunk version merged in
Revision
1462 -
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Modified
Fri Mar 28 15:50:20 2008 UTC
(15 years ago)
by
trankine
Original Path:
branches/windows_from_1456_trunk_merge_to_1459_trunk/paso/src
1. Fix the THROW() macro so it appears only in esysUtils.
2. Introduce the THROW_ANY macro to silence windows compilers.
3. Eliminate many unused variables.
Point 3 needs testing on ALTIX with MPI turned on to see if I have over-looked and removed variables that were in idef'ed out code.
Only compiled and linked on windows at this point.
Revision
1425 -
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Modified
Wed Feb 27 06:12:04 2008 UTC
(15 years, 1 month ago)
by
artak
Original Path:
trunk/paso/src
Added new test for BiCGStab in run_simplesolve.py
algorithmic change in BICGSTAB: from r=r-wt to r=s-wt
Revision
1415 -
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Modified
Thu Feb 21 04:57:17 2008 UTC
(15 years, 1 month ago)
by
ksteube
Original Path:
trunk/paso/src
Recent fixes have remedied problems with running OpenMP/MPI mixed mode programming.
Revision
1413 -
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Modified
Sun Feb 10 08:45:37 2008 UTC
(15 years, 1 month ago)
by
gross
Original Path:
trunk/paso/src
bug effecting MPI fixed found while compiling with windows.
Revision
1410 -
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Modified
Thu Feb 7 04:24:00 2008 UTC
(15 years, 1 month ago)
by
gross
Original Path:
trunk/paso/src
a new version of the algebric upwinding a. flux limiter
Revision
1401 -
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Modified
Fri Jan 25 04:31:18 2008 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/paso/src
rewrite antidiffusion calculation to avoid coloring for OPENMP parallelization
Revision
1400 -
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Modified
Thu Jan 24 06:04:31 2008 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/paso/src
better test example for upwinding added
Revision
1387 -
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Modified
Fri Jan 11 07:45:26 2008 UTC
(15 years, 2 months ago)
by
trankine
Original Path:
temp/paso/src
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.
Revision
1375 -
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Modified
Wed Jan 9 00:15:05 2008 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/paso/src
bug in interpolation at reduced face elements fixed.
Revision
1374 -
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Modified
Tue Jan 8 09:37:55 2008 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/paso/src
some changes to get things going on the cognac.ivec.org.
Revision
1372 -
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Modified
Thu Jan 3 06:30:47 2008 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/paso/src
some OMP related compile problems fixed.
Revision
1371 -
Directory Listing
Modified
Thu Jan 3 06:11:21 2008 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/paso/src
some bugs in the updwing scheme but there are still problem with the cross wind direction.
Revision
1367 -
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Modified
Wed Dec 19 02:45:07 2007 UTC
(15 years, 3 months ago)
by
gross
Original Path:
trunk/paso/src
finley can now assemble a transport problem.
Revision
1366 -
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Modified
Tue Dec 18 05:49:17 2007 UTC
(15 years, 3 months ago)
by
gross
Original Path:
trunk/paso/src
finley can create a TransportProblem now
Revision
1364 -
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Modified
Mon Dec 17 07:22:45 2007 UTC
(15 years, 3 months ago)
by
gross
Original Path:
trunk/paso/src
finley interface to paso's transport solver added.
Revision
1361 -
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Modified
Fri Dec 14 09:26:51 2007 UTC
(15 years, 3 months ago)
by
gross
Original Path:
trunk/paso/src
first steps towards a flux controlled transport solver.
Revision
1347 -
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Modified
Fri Nov 16 05:37:07 2007 UTC
(15 years, 4 months ago)
by
ksteube
Original Path:
trunk/paso/src
Completed mesh.dump(file) and mesh=LoadMesh(file) by adding TagMap and
implementing MPI parallelism.
Now allocating ElementFile for ContactElements even if there are none.
Removed file Mesh_dump.c since dump/loadMesh are in CPPAdapter/MeshAdapter*.cpp.
Revision
1343 -
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Modified
Wed Nov 14 02:48:02 2007 UTC
(15 years, 4 months ago)
by
ksteube
Original Path:
trunk/paso/src
First cut implementation of mesh.dump() using NetCDF. TagMap not
saved yet. The code for Points probably works but has not been tested.
Revision
1322 -
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Modified
Thu Sep 27 04:40:43 2007 UTC
(15 years, 6 months ago)
by
ksteube
Original Path:
trunk/paso/src
Code now compiles and runs on cyclone.hpcu.uq.edu.au.
Had to remove intelc from the SConstruct, but didn't commit that change.
Changed a couple C++ comments to C comments.
Revision
1315 -
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Modified
Tue Sep 25 02:41:13 2007 UTC
(15 years, 6 months ago)
by
ksteube
Original Path:
trunk/paso/src
Copied more files from MPI branch to trunk
Revision
1313 -
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Modified
Tue Sep 25 01:44:26 2007 UTC
(15 years, 6 months ago)
by
ksteube
Original Path:
trunk/paso/src
Copied a handful of files from trunk-mpi-branch into trunk
Revision
1312 -
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Modified
Mon Sep 24 06:18:44 2007 UTC
(15 years, 6 months ago)
by
ksteube
Original Path:
trunk/paso/src
The MPI branch is hereby closed. All future work should be in trunk.
Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.
Revision
1310 -
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Modified
Mon Sep 24 04:00:47 2007 UTC
(15 years, 6 months ago)
by
ksteube
Original Path:
trunk/paso/src
A few additions to make trunk match trunk-mpi-branch
Revision
1133 -
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Modified
Tue May 8 07:19:33 2007 UTC
(15 years, 10 months ago)
by
gross
Original Path:
trunk/paso/src
Changes needed for windows. This still does not work on and has not run on linux and the altix.
There are a few changes in names in the scons script, in particular _libs is used rather than _lib and _libs is always a list. By default on windows MSVC is used. The location of python is at C:\Program Files\python<version>, boost at C:\Program Files\boost and netcdf at C:\Program Files\netcdf.
Revision
1118 -
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Modified
Tue Apr 24 08:55:04 2007 UTC
(15 years, 11 months ago)
by
gross
Original Path:
trunk/paso/src
problem with reset of faulty PDE rhs fixed.
Revision
1098 -
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Modified
Mon Apr 16 23:15:23 2007 UTC
(15 years, 11 months ago)
by
gross
Original Path:
trunk/paso/src
add a few #pragma ivdep which should speed up MV but cannot confiirm this on Pentium
Revision
1049 -
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Modified
Tue Mar 20 03:00:18 2007 UTC
(16 years ago)
by
gross
Original Path:
trunk/paso/src
bandwidth optimizer has been moved back (Lutz: switch on your brain.
)
Revision
1028 -
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Modified
Wed Mar 14 00:15:24 2007 UTC
(16 years ago)
by
gross
Original Path:
trunk/paso/src
modifications to be compliant with _WIN32. The substitutes for asinh, acosh, atanh are still missing (erf will through an exception)
Revision
971 -
Directory Listing
Modified
Wed Feb 14 04:40:49 2007 UTC
(16 years, 1 month ago)
by
ksteube
Original Path:
trunk/paso/src
Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.
Revision
969 -
Directory Listing
Modified
Tue Feb 13 23:02:23 2007 UTC
(16 years, 1 month ago)
by
ksteube
Original Path:
trunk/paso/src
Parallelization using MPI for solution of implicit problems.
Parallelization for explicit problems has already been accomplished in
the main SVN branch.
This is incomplete and is not ready for use.
Revision
940 -
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Modified
Mon Jan 29 00:09:08 2007 UTC
(16 years, 1 month ago)
by
gross
Original Path:
trunk/paso/src
ivdep removed as it produces wrong results with OPenMP
Revision
929 -
Directory Listing
Modified
Wed Jan 17 07:41:13 2007 UTC
(16 years, 2 months ago)
by
gross
Original Path:
trunk/paso/src
reverse orientation added but does not work for 2D yet.
Revision
817 -
Directory Listing
Modified
Sat Aug 26 03:08:52 2006 UTC
(16 years, 7 months ago)
by
ksteube
Original Path:
trunk/paso/src
Can now compile and run with MPI on shake71
Revision
806 -
Directory Listing
Modified
Thu Aug 10 11:58:52 2006 UTC
(16 years, 7 months ago)
by
gross
Original Path:
trunk/paso/src
Interface to the direct solver library UMLPACK is no implemented.
Revision
790 -
Directory Listing
Modified
Wed Jul 26 23:12:34 2006 UTC
(16 years, 8 months ago)
by
bcumming
Original Path:
trunk/paso/src
changes to escript/py_src/pdetools.py and /escript/src/Data.h/.cpp to
make the Locator work in MPI. escript::Data::mindp now returns a 3 tuple,
with the MPI rank of the process on which the minimum value occurs
included. escript::Data::convertToNumArrayFromDPNo also takes the ProcNo
to perform the MPI reduction.
This had to be implemented in both the MPI and non-MPI versions to allow
the necesary changes to the Python code in pdetools.py. In the non-MPI
version ProcNo is set to 0. This works for the explicit scripts tested
thus far, however if it causes problems in your scripts contact Ben or
Lutz, or revert the three files (pdetools.py, Data.h and Data.cpp) to
the previous version.
Revision
782 -
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Modified
Tue Jul 18 00:47:47 2006 UTC
(16 years, 8 months ago)
by
bcumming
Original Path:
trunk/paso/src
Large number of changes to Finley for meshing in MPI.
- optimisation and neatening up of rectcanglular mesh generation code
- first and second order 1D, 2D and 3D rectangular meshes are now
available in finley and escript using MPI.
- reduced meshes now generated in MPI, and interpolation to and from
reduced data types now supported.
Revision
779 -
Directory Listing
Modified
Fri Jul 14 07:41:31 2006 UTC
(16 years, 8 months ago)
by
woo409
Original Path:
trunk/paso/src
+ Updated compilation options for Cognac to squeeze out a bit more performance
+ Now compiles using the Intel Math headers (mathimf.h) rather than plain math.h on both Win32 and Linux platforms when using the Intel compiler. Gives a small boost to performance on Altix and is essential on Windows
Revision
764 -
Directory Listing
Modified
Fri Jun 30 06:33:37 2006 UTC
(16 years, 8 months ago)
by
gross
Original Path:
trunk/paso/src
The statement '#ifdef MACRO1 && MACRO2' is not supported by the
gnu processor. This has been modified.
Revision
757 -
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Modified
Mon Jun 26 13:12:56 2006 UTC
(16 years, 9 months ago)
by
woo409
Original Path:
trunk/paso/src
+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)
Revision
751 -
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Modified
Mon Jun 26 01:46:34 2006 UTC
(16 years, 9 months ago)
by
bcumming
Original Path:
trunk/paso/src
Changes relating to the MPI version of escript
The standard OpenMP version of escript is unchanged
- updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes
over multiple MPI processes.
- added CommBuffer code in Paso for communication of Data associated
with distributed meshes
- updates in Finley and Escript to support distributed data and operations
on distributed data (such as interpolation).
- construction of RHS in MPI, so that simple explicit schemes (such as
/docs/examples/wave.py without IO and the Locator) can run in MPI.
- updated mesh generation for first order line, rectangle and brick
meshes and second order line meshes in MPI.
- small changes to trunk/SConstruct and trunk/scons/ess_options.py to
build the MPI version, these changes are turned off by default.
Revision
727 -
Directory Listing
Modified
Fri May 12 06:31:06 2006 UTC
(16 years, 10 months ago)
by
gross
Original Path:
trunk/paso/src
In case of an error in paso a seg fault occured. this was caused by
inproper deallocation of memory in this case. this problem is fixed now.
Revision
700 -
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Modified
Thu Apr 6 00:13:40 2006 UTC
(16 years, 11 months ago)
by
gross
Original Path:
trunk/paso/src
A few changes in the build mechanism and the file structure so scons can build release tar files:
* paso/src/Solver has been moved to paso/src
* all test_.py are now run_.py files and are assumed to be passing python tests. they can run by
scons py_tests and are part of the release test set
* escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory
(rather then the PYTHONPATH).
* all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i
by not run automatically.
* CppUnitTest is now treated as a escript module (against previous decisions).
* scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files)
the python tests don't pass yet due to path problems.
Revision
682 -
Directory Listing
Modified
Mon Mar 27 02:43:09 2006 UTC
(17 years ago)
by
robwdcock
Original Path:
trunk/paso/src
+ NEW BUILD SYSTEM
This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.
ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows
module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3
Revision
631 -
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Modified
Thu Mar 23 04:27:32 2006 UTC
(17 years ago)
by
dhawcroft
Original Path:
trunk/paso/src
Prepended all paso source files with new Copyright notice
Revision
584 -
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Modified
Thu Mar 9 23:03:38 2006 UTC
(17 years ago)
by
gross
Original Path:
trunk/paso/src
eigenvalues: compiles and passes tests on altix now
Revision
505 -
Directory Listing
Modified
Wed Feb 8 23:27:16 2006 UTC
(17 years, 1 month ago)
by
gross
Original Path:
trunk/paso/src
bandwidth optimizer but it does not really work.
Revision
495 -
Directory Listing
Modified
Mon Feb 6 06:32:06 2006 UTC
(17 years, 1 month ago)
by
gross
Original Path:
trunk/paso/src
performance monitoring added. complies without PAPI.
Revision
494 -
Directory Listing
Modified
Fri Feb 3 07:35:49 2006 UTC
(17 years, 1 month ago)
by
gross
Original Path:
trunk/paso/src
draft for performance monitor tool in paso (well, not really)
Revision
483 -
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Modified
Thu Feb 2 02:10:15 2006 UTC
(17 years, 1 month ago)
by
jgs
Original Path:
trunk/paso/src
change includes to use PasoUtil.h, and add remainder
of includes to SConscript include install
Revision
482 -
Directory Listing
Modified
Thu Feb 2 02:00:30 2006 UTC
(17 years, 1 month ago)
by
jgs
Original Path:
trunk/paso/src
move Util -> PasoUtil to prevent clash with finley/Util
Revision
481 -
Directory Listing
Modified
Wed Feb 1 05:57:50 2006 UTC
(17 years, 1 month ago)
by
jgs
Original Path:
trunk/paso/src
add mechanism to install .h files to inc directories
(still need to specify full lists of .h files to install)
Revision
466 -
Directory Listing
Modified
Wed Jan 25 01:25:18 2006 UTC
(17 years, 2 months ago)
by
jgs
Original Path:
trunk/paso/src
remove redundant inc dir from paso src tree
Revision
430 -
Directory Listing
Modified
Wed Jan 11 06:40:50 2006 UTC
(17 years, 2 months ago)
by
gross
Original Path:
trunk/paso/src
ILU has been replicated is called RILU (recursive ILU) now. ILU will now be reimplemented.
Revision
425 -
Directory Listing
Modified
Tue Jan 10 04:10:39 2006 UTC
(17 years, 2 months ago)
by
gross
Original Path:
trunk/paso/src
The sparse solver can be called by paso now.
the building has been change to reduce some code redundancy:
now all scons SCscripts are importing scons/esys_options.py which
imports platform specific settings.
Revision
415 -
Directory Listing
Modified
Wed Jan 4 05:37:33 2006 UTC
(17 years, 2 months ago)
by
gross
Original Path:
trunk/paso/src
a better way of representing the matrix format type is introduced. this is needed for the Paradiso and UMFPACK interface
Revision
412 -
Directory Listing
Modified
Tue Jan 3 00:41:56 2006 UTC
(17 years, 2 months ago)
by
gross
Original Path:
trunk/paso/src
nicer wahy of representing the natrix format is introduced
Revision
403 -
Directory Listing
Modified
Thu Dec 22 22:54:32 2005 UTC
(17 years, 3 months ago)
by
gross
Original Path:
trunk/paso/src
solver method is now selcted by matrix format
Revision
394 -
Directory Listing
Modified
Tue Dec 20 07:20:32 2005 UTC
(17 years, 3 months ago)
by
gross
Original Path:
trunk/paso/src
symmetric matrix in SCSL switched off
Revision
352 -
Directory Listing
Modified
Wed Dec 14 02:21:37 2005 UTC
(17 years, 3 months ago)
by
jgs
Original Path:
trunk/paso/src
turns out Install() targets should also be made Default()
targets if you want them to actually reliably work!
Revision
288 -
Directory Listing
Modified
Fri Dec 2 01:55:04 2005 UTC
(17 years, 3 months ago)
by
jgs
Original Path:
trunk/paso/src
now automatically build unit tests as required based on dependencies
between unit tests and libraries
Revision
223 -
Directory Listing
Modified
Thu Nov 24 23:12:13 2005 UTC
(17 years, 4 months ago)
by
jgs
Original Path:
trunk/paso/src
pass in cc/cxx settings from config file
Revision
192 -
Directory Listing
Modified
Mon Nov 21 04:52:14 2005 UTC
(17 years, 4 months ago)
by
jgs
Original Path:
trunk/paso/src
pass in top level install directory for finley/escript/bruce/paso
libraries when building via top level scons script
Revision
191 -
Directory Listing
Modified
Mon Nov 21 04:10:12 2005 UTC
(17 years, 4 months ago)
by
jgs
Original Path:
trunk/paso/src
push platform dependent compiler flags and include directories up to library level scons files - these will eventually be brought in from external config files
Revision
190 -
Directory Listing
Modified
Mon Nov 21 03:27:42 2005 UTC
(17 years, 4 months ago)
by
jgs
Original Path:
trunk/paso/src
pass in value for esysroot and use this to determine include file locations
Revision
187 -
Directory Listing
Modified
Mon Nov 21 01:15:26 2005 UTC
(17 years, 4 months ago)
by
jgs
Original Path:
trunk/paso/src
added first draft of scons construct/config scripts for paso library
Revision
155 -
Directory Listing
Modified
Wed Nov 9 02:02:19 2005 UTC
(17 years, 4 months ago)
by
jgs
Original Path:
trunk/paso/src
move all directories from trunk/esys2 into trunk and remove esys2
Revision
154 -
Directory Listing
Modified
Mon Nov 7 05:51:17 2005 UTC
(17 years, 4 months ago)
by
jgs
Original Path:
trunk/esys2/paso/src
Merge of development branch dev-02 back to main trunk on 2005-11-07
Revision
153 -
Directory Listing
Modified
Tue Oct 25 01:51:20 2005 UTC
(17 years, 5 months ago)
by
jgs
Original Path:
trunk/esys2/paso/src
Merge of development branch dev-02 back to main trunk on 2005-10-25
Revision
150 -
Directory Listing
Added
Thu Sep 15 03:44:45 2005 UTC
(17 years, 6 months ago)
by
jgs
Original Path:
trunk/esys2/paso/src
Merge of development branch dev-02 back to main trunk on 2005-09-15