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Revision 1626 - Directory Listing
Modified Fri Jul 11 08:41:07 2008 UTC (9 years, 5 months ago) by phornby

To resolve a conflict over what "I" is in the case of intel compilers
(in the intel math libraty include) the names of the I and J variables have been changed.

I -> Ip
J -> Jp,

the p meaning "pointer".



Revision 1624 - Directory Listing
Modified Wed Jul 2 07:58:56 2008 UTC (9 years, 5 months ago) by phornby
Just add py_tests target description.



Revision 1623 - Directory Listing
Modified Wed Jul 2 07:56:54 2008 UTC (9 years, 5 months ago) by phornby
Clean up debugging files ready for trunk merge




Revision 1622 - Directory Listing
Modified Wed Jul 2 07:00:18 2008 UTC (9 years, 5 months ago) by phornby
Files changed on trunk since last 1580 merge.



Revision 1621 - Directory Listing
Modified Wed Jul 2 06:56:57 2008 UTC (9 years, 5 months ago) by phornby
Copied from: branches/windows_from_1456_trunk_1580_merged_in revision 1620
Prepare to merge latest trunk changen onto a new branch




Revision 1617 - Directory Listing
Modified Mon Jun 23 23:01:27 2008 UTC (9 years, 5 months ago) by ksteube
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Windows branch passes test suite on Savanna...except for paso/src/mmio.c
I reverted to earlier version of mmio.c to run the tests


Revision 1616 - Directory Listing
Modified Tue Jun 17 10:42:36 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Remove tabs & use standard 4 space indent. Cannot yet test on linux because of vtk problems.



Revision 1615 - Directory Listing
Modified Tue Jun 17 10:22:20 2008 UTC (9 years, 6 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Movie generation now works.

Have got as far as PyCAD tests. Suspect a repeat of the issues below.

More care is needed when writing file names to data files that are to be read by C/C++ programs.
The '\' in windows file names has the obvious effect 
when read from a file by a C/C++ program. It is also not appreciated on the command line by some cygwin applications: ppm2mpeg being the case in point here.  Also, windows file names often
contain blanks and other strange characters, in turn requiring even more care. This can happen on *nix systems too. Finally, cygwin gcc sometimes hates unix formatted files on windows! It appears liberal use of unix2dos helps cure things when 'raw-ish' C I/O (fgets) is used by cygwin programs. isspace() also seems to be a bit deaf in this respect in in cygwin's gcc RTL.

Revision 1614 - Directory Listing
Modified Mon Jun 16 17:11:32 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
And the backout of the last debugging change.



Revision 1613 - Directory Listing
Modified Mon Jun 16 17:10:04 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Quick edit to track the ppmtompeg problem on windows.



Revision 1612 - Directory Listing
Modified Mon Jun 16 14:01:00 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Fix a silly scoping error that made esysUtils::malloc and co.
become recursive. (OOPS). This fixes the DumpAndLoad unit test failures.



Revision 1611 - Directory Listing
Modified Mon Jun 16 12:20:10 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Just cleaning up unused vars.



Revision 1610 - Directory Listing
Modified Mon Jun 16 12:03:12 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
To hell with it, just ask the developer to edit
system_dep.h if they want esysUtils to be shared.

Instructions are in these files (as comments).



Revision 1609 - Directory Listing
Modified Mon Jun 16 11:46:13 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Have to work harder to make esysUtils static.



Revision 1608 - Directory Listing
Modified Mon Jun 16 11:30:56 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
try restoring esysUtils to a static library.



Revision 1607 - Directory Listing
Modified Mon Jun 16 10:14:06 2008 UTC (9 years, 6 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Parameterise the python version.

Revision 1606 - Directory Listing
Modified Mon Jun 16 10:06:28 2008 UTC (9 years, 6 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1580_merged_in
parameterise the python version from sys module info.

Revision 1605 - Directory Listing
Modified Sat Jun 14 11:04:53 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Add NETCDF to the linux build.

Mod Paso_MPI_appendRankToFileName to take a const char *



Revision 1604 - Directory Listing
Modified Sat Jun 14 10:06:31 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Undo a hack for debugging std::string return values.
Problem on windows now understood.
FunctionSpace still suffers a mutability problem
of a very subtle nature.
If python does an __str__() and gets a type string, then
a later operator= mutates its type, the string held by python will
no longer be valid. This could cause programming errors.

Revision 1603 - Directory Listing
Modified Sat Jun 14 09:36:48 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Fix comments.

Revision 1602 - Directory Listing
Modified Sat Jun 14 09:20:06 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
back out the hack to find where the heap corruption was.

Revision 1601 - Directory Listing
Modified Sat Jun 14 08:00:35 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Completely re-factor this code so that muli-statement
macros are totally safe, and there is not a preponderance
of inscrutable ifdefs guarding comprehension of the code.

Revision 1600 - Directory Listing
Modified Fri Jun 13 10:12:22 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Fix a few other oversights in keeping the windows intel compiler options up to date.

Revision 1599 - Directory Listing
Modified Fri Jun 13 09:54:18 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Fix a sys_libs oversight made apparent by a fresh checkout.

Revision 1598 - Directory Listing
Modified Fri Jun 13 09:18:36 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
There seems to be stale scons data somewhere still looking for the old boost dll. Checkin ready for a clean checkout.

Revision 1597 - Directory Listing
Modified Fri Jun 13 07:50:26 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Compile with the same options used to build python.

Revision 1596 - Directory Listing
Modified Thu Jun 12 10:31:03 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
This now passes run_tests on windows when compiled with multi-threaded debugging malloc/free.

I don't understand the exact issue, but I'm getting close. 
I found that hacking 
getResultSliceShape and determineResultShape 
to return const references to 
a class static rather than copies of stack locals fixed the
heap corruption problems that the debugging malloc/free 
was detecting.

I have little confidence that this has fixed things. I need to know exactly what's going on to fix all possible errors of the same type.

Revision 1595 - Directory Listing
Modified Tue Jun 10 09:22:36 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Be a bit more careful to re-instate the value of _DEBUG on windows.



Revision 1594 - Directory Listing
Modified Tue Jun 10 09:05:46 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Removed what appeared to be unneeded strdups in calls to
Paso_MPI_appendRankToFileName. It looks to me like Paso_MPI_appendRankToFileName
does its own memory allocation using macros from Common.h???

Anyway, I cannot easily test this change since it is part of the MPI code.



Revision 1593 - Directory Listing
Modified Thu Jun 5 11:01:24 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Fix the uninitialised use of tau for the second time.



Revision 1592 - Directory Listing
Modified Thu Jun 5 10:21:22 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Two reasons.

1. prepare for a mrege to the trunk.
2. Windows debug environment is good enough that it can indicate that the problem is not
here.



Revision 1591 - Directory Listing
Modified Thu Jun 5 10:02:34 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Fix code around strcpy so it throws if there's a
zero length file name given. This guards agains a possible
memory overrun.



Revision 1590 - Directory Listing
Modified Thu Jun 5 09:40:56 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Make sure strcpy & strncpy arguments are correctly managed.



Revision 1589 - Directory Listing
Modified Thu Jun 5 09:20:30 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Remove a magic number (4096) from a MEMALLOC & parameterise safely.



Revision 1588 - Directory Listing
Modified Thu Jun 5 06:10:06 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Dress naked mallocs in mmio.c



Revision 1587 - Directory Listing
Modified Thu Jun 5 05:50:20 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
define esysUtils::malloc() and friends to dress naked mallocs in C++ code.

Remove unneedded PyObject_NEW macros from Common.h.

Add needed system include files to blocktimer.c

Dress the naked mallocs in DataFactory and DataTagged.



Revision 1586 - Directory Listing
Modified Thu Jun 5 04:43:56 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Control _DEBUG on windows to prevent the inclusion of python.h from forcing a link to python24_d.lib

Revision 1585 - Directory Listing
Modified Wed Jun 4 11:39:42 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Quick straw clutching to see if any of the MEMALLOC macros were responsible. They all looked OK, and replacement with PyMem_Malloc and co. made no difference.

Revision 1584 - Directory Listing
Modified Wed Jun 4 09:08:25 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Try using PyMeme_etc() routines on windows for memory management.



Revision 1583 - Directory Listing
Modified Wed Jun 4 08:26:06 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Re-jig the MEMALLOC macros to make them readable and semi-colon safe.
Add an _WIN32 branch to the definitions to try to locate the heap corruption
occuring on windows.



Revision 1582 - Directory Listing
Modified Wed Jun 4 07:20:59 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Merge in trunk changes from 1574 to 1580.



Revision 1581 - Directory Listing
Modified Wed Jun 4 07:10:43 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1580_merged_in
Copied from: branches/windows_from_1456_trunk_1574_merged_in revision 1580
Prepare for merging the latest trunk changes onto the windows branch.



Revision 1580 - Directory Listing
Modified Tue Jun 3 14:03:40 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1574_merged_in
This once again compiles and links under windows after merging to trunk version 1574. scons run_tests also passes now. py_tests still fails in the same way.  Had to link against winsock2 to get gethostname(), and had to re-do some work on eliminating unused vars. Also eliminated signed/unsigned comparisons where I saw them.

Revision 1577 - Directory Listing
Modified Wed May 28 11:13:51 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1574_merged_in
Copied from: branches/windows_from_1456_trunk_1544_merged_in revision 1576
After checking in the merged files, rename 1544 merge branch to a 1574 merged branch.



Revision 1576 - Directory Listing
Modified Wed May 28 11:10:51 2008 UTC (9 years, 6 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1544_merged_in
Merged in trunk up to rev. 1574.



Revision 1558 - Directory Listing
Modified Tue May 20 07:33:49 2008 UTC (9 years, 6 months ago) by ksteube
Original Path: branches/windows_from_1456_trunk_1544_merged_in
Windows branch now compiles on UNIX with one warning


Revision 1549 - Directory Listing
Modified Fri May 2 07:22:52 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1544_merged_in
Complete the op=() implementations for exceptions.
Don't expect any effect yet. Problems lay elsewhere.



Revision 1548 - Directory Listing
Modified Fri May 2 06:59:11 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1544_merged_in
Update all escript exceptions with an explicit op=() method.



Revision 1547 - Directory Listing
Modified Fri May 2 06:30:48 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1544_merged_in
Adjust comment.



Revision 1546 - Directory Listing
Modified Thu May 1 07:09:49 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1544_merged_in
Copied from: branches/windows_from_1456_trunk_1522_merged_in revision 1545
Copy branch to new name to reflect the new trunk version merged in



Revision 1545 - Directory Listing
Modified Thu May 1 07:08:20 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Merg in trunk changes.



Revision 1544 - Directory Listing
Modified Thu May 1 03:09:42 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Dummy commit to test e-mail notification



Revision 1540 - Directory Listing
Modified Wed Apr 30 00:06:31 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
disable PCH and put symbols in .obj files just in case....

Revision 1539 - Directory Listing
Modified Tue Apr 29 10:32:59 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in


Revision 1538 - Directory Listing
Modified Tue Apr 29 09:01:17 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Explicit, presumably leaky destructor added to
thwart 'clever' destructor generated code that
assumes a good programmer.

Revision 1537 - Directory Listing
Modified Tue Apr 29 08:18:15 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Add the link_flags_debug to the windows options example.

Revision 1536 - Directory Listing
Modified Tue Apr 29 08:08:58 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Add link_flags and link_flags_debug options

Revision 1535 - Directory Listing
Modified Tue Apr 29 03:45:06 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Unimplemented function now returns an error value.

Revision 1534 - Directory Listing
Modified Tue Apr 29 03:34:38 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Eliminate unused vars & fix a possible bug in Assemble_jacobeans (use of unitialised
variable).



Revision 1533 - Directory Listing
Modified Tue Apr 29 03:12:46 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Be explicit about the external linkage of constructors.
Fix syntax to compile on linux.



Revision 1532 - Directory Listing
Modified Tue Apr 29 02:44:58 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
remove a comment.

Revision 1531 - Directory Listing
Modified Tue Apr 29 02:44:31 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
dll export all virtual methods.

Revision 1530 - Directory Listing
Modified Tue Apr 29 02:15:27 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Add operator=()

Revision 1529 - Directory Listing
Modified Tue Apr 29 02:03:19 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Add an updateMessage to DerivedEX::operator=(), just in case.
This test case is the pattern to be used in deriving EsysExceptions.

Revision 1528 - Directory Listing
Modified Tue Apr 29 01:51:01 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Add operator=() to DerivedEx.
Make sure virtual what() extends down to std::exception
and that the virtual exceptioName() method picks up
the right exception name when called as a std::exception.

Revision 1526 - Directory Listing
Modified Mon Apr 28 10:19:08 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Add operator= and modify copy constructor to guard
against implementations that do pointer copies in
std::exception......

Revision 1525 - Directory Listing
Modified Mon Apr 28 07:46:17 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Explicitly link to python in case of creating a .so.



Revision 1523 - Directory Listing
Modified Tue Apr 22 06:15:31 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1522_merged_in
Copied from: branches/windows_from_1456_trunk_1490_merged_in revision 1522
Rename to reflect the trunk version merged in.

Revision 1522 - Directory Listing
Modified Tue Apr 22 06:13:48 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Keep tracking the trunk changes, currently tracked to rev. 1520.
The trunk version of finley/test/python/run_pde.... is not being
tracked for now; keeping the branch version.


Revision 1521 - Directory Listing
Modified Tue Apr 22 06:06:56 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Put the abs back to an fabs. Is this so wrong?

Revision 1520 - Directory Listing
Modified Tue Apr 22 05:32:08 2008 UTC (9 years, 7 months ago) by phornby
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Catch up with Lutz' mods  of files I've modded before merging in recent trunk changes.

Revision 1510 - Directory Listing
Modified Mon Apr 14 13:09:17 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Failed attempt to get esysUtils to compile first during debug cycles.

Revision 1509 - Directory Listing
Modified Mon Apr 14 13:07:50 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Get more explicit about linkage class of methods on windows.
Make into a shared library for testing purposes.

Revision 1508 - Directory Listing
Modified Mon Apr 14 13:06:23 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Unused vars and signed/unsigned in comparisons.

Revision 1507 - Directory Listing
Modified Mon Apr 14 13:05:08 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
More unused vars.

Revision 1506 - Directory Listing
Modified Mon Apr 14 13:03:29 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Lint unused vars.

Revision 1505 - Directory Listing
Modified Mon Apr 14 12:57:37 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Guard the declaration of loc_norm.

Revision 1504 - Directory Listing
Modified Mon Apr 14 12:56:54 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Initialise tau before its first use to silence the compiler.

Revision 1503 - Directory Listing
Modified Mon Apr 14 12:40:21 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
replace an ineffectual == with an = at line 104. Please check.

Revision 1502 - Directory Listing
Modified Mon Apr 14 10:04:36 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Remove loss of precision waring errors.

Revision 1501 - Directory Listing
Modified Mon Apr 14 09:09:20 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
You've been programming in python too long. "or", "and" and "not" are not C++ boolean ops. The SGI compiler is being kind to you :)

Revision 1500 - Directory Listing
Modified Mon Apr 14 09:05:37 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Lint unused vars, watch out for ifdefed code.

Revision 1499 - Directory Listing
Modified Mon Apr 14 09:03:46 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Lint inused var.

Revision 1498 - Directory Listing
Modified Mon Apr 14 09:02:47 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Silence some unrefed var warnings, being careful to not blow away vars used in the ifdef'd MPI code.

Revision 1497 - Directory Listing
Modified Mon Apr 14 09:00:03 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
abs -> fabs. Potentially serious error, norms were being converted to ints in convergence tests.

Revision 1496 - Directory Listing
Modified Mon Apr 14 08:58:27 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
attempt a fix to the 2x2 block diagonal multiply case.

Revision 1495 - Directory Listing
Modified Mon Apr 14 07:51:19 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
And replace this with the test version on the branch.

Revision 1492 - Directory Listing
Modified Mon Apr 14 06:43:51 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_1490_merged_in
Copied from: branches/windows_from_1456_trunk_merge_to_1459_trunk revision 1491
Copied remotely

Revision 1491 - Directory Listing
Modified Mon Apr 14 06:41:35 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_merge_to_1459_trunk
merge the trunk changes onto the branch.

Revision 1490 - Directory Listing
Modified Mon Apr 14 06:35:21 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_merge_to_1459_trunk
Prepare for another update to the branch to keep up with the trunk

Revision 1462 - Directory Listing
Modified Fri Mar 28 15:50:20 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_merge_to_1459_trunk
1. Fix the THROW() macro so it appears only in esysUtils.
2. Introduce the THROW_ANY macro to silence windows compilers.
3. Eliminate many unused variables.

Point 3 needs testing on ALTIX with MPI turned on to see if I have over-looked and removed variables that were in idef'ed out code.

Only compiled and linked on windows at this point.

Revision 1461 - Directory Listing
Modified Fri Mar 28 07:51:34 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_merge_to_1459_trunk
Copied from: branches/windows_from_1456_trunk_merge_to1459_trunk revision 1460
get the name right

Revision 1460 - Directory Listing
Modified Fri Mar 28 07:48:46 2008 UTC (9 years, 8 months ago) by trankine
Original Path: branches/windows_from_1456_trunk_merge_to1459_trunk
Copied from: branches/windows_from_1456_trunk revision 1459
update of branch to keep up with trunk

Revision 1457 - Directory Listing
Modified Fri Feb 29 06:18:21 2008 UTC (9 years, 9 months ago) by phornby
Original Path: branches/windows_from_1456_trunk
Copied from: trunk revision 1456
Open new branch for system_dep.h fixup & dealing with intermittent run_tests failures on windows.



Revision 1456 - Directory Listing
Modified Thu Feb 28 17:20:49 2008 UTC (9 years, 9 months ago) by phornby
Original Path: trunk
Clean up some debugging files from the branch merge.



Revision 1455 - Directory Listing
Modified Thu Feb 28 17:19:44 2008 UTC (9 years, 9 months ago) by phornby
Original Path: trunk
Merge of branches/windows_from_1431_trunk.

Revamp of the exception system.
Fix unused vars and signed/unsigned comparisons.
defined a macro THROW(ARG) in the system_dep.h's to
deal with the expectations of declarations on different architectures.

Details in the logs of branches/windows_from_1431_trunk.

pre-merge snapshot of the trunk in tags/trunk_at_1452



Revision 1431 - Directory Listing
Modified Wed Feb 27 09:52:25 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk
This trunk now compiles and links under windows.
It passes the FunctionSpace.__str__() test 50000 times on windows.
It fails scons run_tests and scons_py_tests as it always did, but I have an idea why.

Please remember to add the appropriate dll linkage info to declarations that are to be visible outside a .so or .dll. Terry (BTW, PGH here) spent a lot of hacks clearing out blocktimer from the rest of the code when these 5 or 6 lines would have done the trick.

Revision 1430 - Directory Listing
Modified Wed Feb 27 09:07:19 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk
Get the windows dll linkage right fo C_TensorBinaryOperation

Revision 1429 - Directory Listing
Modified Wed Feb 27 08:53:20 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk
"and" and "or" are not C or C++ boolean operations.

Revision 1428 - Directory Listing
Modified Wed Feb 27 08:07:11 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk
Merge changes from windows port branch to test build on *nix not broken.

Revision 1427 - Directory Listing
Modified Wed Feb 27 07:54:48 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk
brought from the windows port branch. Should make no difference to *nix's

Revision 1426 - Directory Listing
Modified Wed Feb 27 06:12:15 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk
Merge the changes to these few files with the windows port branch to test just these changes under linux and altix.

Revision 1425 - Directory Listing
Modified Wed Feb 27 06:12:04 2008 UTC (9 years, 9 months ago) by artak
Original Path: trunk
Added new test for BiCGStab in run_simplesolve.py
algorithmic change in BICGSTAB: from r=r-wt to r=s-wt


Revision 1423 - Directory Listing
Modified Wed Feb 27 04:28:48 2008 UTC (9 years, 9 months ago) by gross
Original Path: trunk
interpoilation inserted

Revision 1417 - Directory Listing
Modified Mon Feb 25 04:45:48 2008 UTC (9 years, 9 months ago) by gross
Original Path: trunk
some more work on the transport solver.

Revision 1416 - Directory Listing
Modified Mon Feb 25 03:56:17 2008 UTC (9 years, 9 months ago) by ksteube
Original Path: trunk
Set version number to 0 in case it's empty.


Revision 1415 - Directory Listing
Modified Thu Feb 21 04:57:17 2008 UTC (9 years, 9 months ago) by ksteube
Original Path: trunk
Recent fixes have remedied problems with running OpenMP/MPI mixed mode programming.


Revision 1414 - Directory Listing
Modified Thu Feb 14 10:01:43 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk
a first verion of a Stokes solver

Revision 1413 - Directory Listing
Modified Sun Feb 10 08:45:37 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk
bug effecting MPI fixed found while compiling with windows.

Revision 1412 - Directory Listing
Modified Fri Feb 8 04:46:10 2008 UTC (9 years, 10 months ago) by ksteube
Original Path: trunk
Updated configuration for ac.apac.edu.au


Revision 1411 - Directory Listing
Modified Thu Feb 7 08:09:15 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk
second test for upwinding added

Revision 1410 - Directory Listing
Modified Thu Feb 7 04:24:00 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk
a new version of the algebric upwinding a. flux limiter

Revision 1409 - Directory Listing
Modified Wed Feb 6 22:44:28 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk
getTagNumber called the wrong corresponding FunctionSpace method. Results were wrong for number of data points per sample >1.

Revision 1408 - Directory Listing
Modified Mon Feb 4 07:19:50 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk
some problems with openmp fixed.

Revision 1407 - Directory Listing
Modified Mon Feb 4 06:45:48 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk
new upwinding algorithm (still fails)

Revision 1403 - Directory Listing
Modified Thu Jan 31 04:17:38 2008 UTC (9 years, 10 months ago) by ksteube
Original Path: trunk
Added configuration options for VM to give it access to NetCDF


Revision 1402 - Directory Listing
Modified Thu Jan 31 00:17:49 2008 UTC (9 years, 10 months ago) by ksteube
Original Path: trunk
now implemented to read/fan out elements


Revision 1401 - Directory Listing
Modified Fri Jan 25 04:31:18 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk
rewrite antidiffusion calculation to avoid coloring for OPENMP parallelization

Revision 1400 - Directory Listing
Modified Thu Jan 24 06:04:31 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk
better test example for upwinding added

Revision 1393 - Directory Listing
Modified Mon Jan 21 06:21:14 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk
axissymmetric collaps added.

Revision 1392 - Directory Listing
Modified Mon Jan 21 06:20:54 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk
axissymmetric collaps added.

Revision 1391 - Directory Listing
Modified Mon Jan 14 03:54:57 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
a waring is printed if the revision number could not be recovered.

Revision 1390 - Directory Listing
Modified Mon Jan 14 03:46:11 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
typo fixed.

Revision 1389 - Directory Listing
Modified Mon Jan 14 03:31:57 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
a hopefully more robust way of setting the revision number.

Revision 1388 - Directory Listing
Modified Fri Jan 11 07:45:58 2008 UTC (9 years, 11 months ago) by trankine
Original Path: trunk
Copied from: temp revision 1387
And get the *(&(*&(* name right

Revision 1387 - Directory Listing
Modified Fri Jan 11 07:45:26 2008 UTC (9 years, 11 months ago) by trankine
Original Path: temp
Copied from: temp_trunk_copy revision 1386
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

Revision 1384 - Directory Listing
Modified Fri Jan 11 02:29:38 2008 UTC (9 years, 11 months ago) by phornby
Original Path: temp_trunk_copy
Copied from: trunk revision 1383
Make a temp copy of the trunk before checking in the windows changes



Revision 1383 - Directory Listing
Modified Thu Jan 10 06:48:28 2008 UTC (9 years, 11 months ago) by phornby
Original Path: trunk
Link to the latest boost.



Revision 1382 - Directory Listing
Modified Thu Jan 10 00:21:22 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
some tests got deactivated. they are back now.

Revision 1381 - Directory Listing
Modified Wed Jan 9 07:59:15 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
import sys missing

Revision 1380 - Directory Listing
Modified Wed Jan 9 04:26:03 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
some info about the modules to be used

Revision 1379 - Directory Listing
Modified Wed Jan 9 04:17:03 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
this seems to work on the cognac@ivec.org

Revision 1378 - Directory Listing
Modified Wed Jan 9 03:53:38 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
new reference files considering the change in quadrature schemes



Revision 1377 - Directory Listing
Modified Wed Jan 9 03:45:59 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
Some code was moved around to slow down the bustling intel compiler v10.



Revision 1376 - Directory Listing
Modified Wed Jan 9 01:38:18 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
inserted sys.exit(1) into the tests so scons can detect the failure of the test. 
A similar statement has been removed from an earlier as it produces problems on 64bit Linux. Previously exit(0) was called in case of success but now this is not done in order to avoid a fatal end of the program. in the case of an error in the test there could be a fatal error so but I guess that this not really a problem.

PS: the fact that signal 0 was returned even for the case of an error lead to the illusion that all tests have been completed successfully.



Revision 1375 - Directory Listing
Modified Wed Jan 9 00:15:05 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
bug in interpolation at reduced face elements fixed.

Revision 1374 - Directory Listing
Modified Tue Jan 8 09:37:55 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
some changes to get things going on the cognac.ivec.org.

Revision 1373 - Directory Listing
Modified Mon Jan 7 05:32:25 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
on ess: link against python 2.4.3 now.

Revision 1372 - Directory Listing
Modified Thu Jan 3 06:30:47 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
some OMP related compile problems fixed.

Revision 1371 - Directory Listing
Modified Thu Jan 3 06:11:21 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
some bugs in the updwing scheme but there are still problem with the cross wind direction.

Revision 1370 - Directory Listing
Modified Wed Jan 2 09:21:43 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk
explicit upwinding scheme added.

Revision 1369 - Directory Listing
Modified Fri Dec 21 05:51:44 2007 UTC (9 years, 11 months ago) by gross
Original Path: trunk
does something now!

Revision 1368 - Directory Listing
Modified Wed Dec 19 03:45:20 2007 UTC (9 years, 11 months ago) by gross
Original Path: trunk
very first step towards a pythn wrapper for the transport problem.

Revision 1367 - Directory Listing
Modified Wed Dec 19 02:45:07 2007 UTC (9 years, 11 months ago) by gross
Original Path: trunk
finley can now assemble a transport problem.

Revision 1366 - Directory Listing
Modified Tue Dec 18 05:49:17 2007 UTC (10 years ago) by gross
Original Path: trunk
finley can create a TransportProblem now

Revision 1365 - Directory Listing
Modified Mon Dec 17 07:28:23 2007 UTC (10 years ago) by gross
Original Path: trunk
some cosmetics.

Revision 1364 - Directory Listing
Modified Mon Dec 17 07:22:45 2007 UTC (10 years ago) by gross
Original Path: trunk
finley interface to paso's transport solver added.

Revision 1363 - Directory Listing
Modified Mon Dec 17 03:42:03 2007 UTC (10 years ago) by gross
Original Path: trunk
initialization for FCT solver added.

Revision 1362 - Directory Listing
Modified Mon Dec 17 02:28:16 2007 UTC (10 years ago) by gross
Original Path: trunk
and more on FCT solver

Revision 1361 - Directory Listing
Modified Fri Dec 14 09:26:51 2007 UTC (10 years ago) by gross
Original Path: trunk
first steps towards a flux controlled transport solver.

Revision 1360 - Directory Listing
Modified Thu Dec 13 05:05:00 2007 UTC (10 years ago) by ksteube
Original Path: trunk
Partial implementation of ReadMeshMPI.
Will eventually replace ReadMesh but for now has a different name.


Revision 1359 - Directory Listing
Modified Wed Dec 5 03:42:09 2007 UTC (10 years ago) by gross
Original Path: trunk
debug print removed.

Revision 1358 - Directory Listing
Modified Wed Dec 5 03:41:06 2007 UTC (10 years ago) by gross
Original Path: trunk
setTaggedValue works now for expanded data.

Revision 1357 - Directory Listing
Modified Thu Nov 29 08:39:32 2007 UTC (10 years ago) by gross
Original Path: trunk
interplote function returns now argument if it has requested function space

Revision 1356 - Directory Listing
Modified Thu Nov 29 05:48:33 2007 UTC (10 years ago) by poulet
Original Path: trunk
* moved to python 2.4 to python 2.5

Revision 1355 - Directory Listing
Modified Thu Nov 29 00:53:31 2007 UTC (10 years ago) by ksteube
Original Path: trunk
Test didn't compile on Windows due to lack of cast to double


Revision 1354 - Directory Listing
Modified Wed Nov 28 02:23:30 2007 UTC (10 years ago) by trankine
Original Path: trunk
* rm and touch are not valid windows commands - use the scons provided methods.

Revision 1353 - Directory Listing
Modified Thu Nov 22 06:05:35 2007 UTC (10 years ago) by matt
Original Path: trunk
Reversed the removal of blocktimer code. This needs to be fixed properly for
the Windows stuff to work.



Revision 1352 - Directory Listing
Modified Thu Nov 22 03:43:28 2007 UTC (10 years ago) by matt
Original Path: trunk
Removed blocktimer code from Finley_Assemble_PDE().


Revision 1351 - Directory Listing
Modified Thu Nov 22 01:54:26 2007 UTC (10 years ago) by matt
Original Path: trunk
Removed blocktimer code from gradOn().


Revision 1350 - Directory Listing
Modified Thu Nov 22 01:17:20 2007 UTC (10 years ago) by matt
Original Path: trunk
Disambiguation of more template argument parameters so that it compiles under Windows.


Revision 1349 - Directory Listing
Modified Wed Nov 21 06:38:08 2007 UTC (10 years ago) by matt
Original Path: trunk
Disambiguation of several template argument parameters so that it compiles under Windows.


Revision 1348 - Directory Listing
Modified Mon Nov 19 00:21:36 2007 UTC (10 years ago) by ksteube
Original Path: trunk
If using MPI then disable OpenMP, because it doesn't work with both.
Record in trunk/lib what options we compiled with:
	OpenMP, MPI, debug, bounds_check


Revision 1347 - Directory Listing
Modified Fri Nov 16 05:37:07 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk
Completed mesh.dump(file) and mesh=LoadMesh(file) by adding TagMap and
implementing MPI parallelism.
Now allocating ElementFile for ContactElements even if there are none.
Removed file Mesh_dump.c since dump/loadMesh are in CPPAdapter/MeshAdapter*.cpp.


Revision 1346 - Directory Listing
Modified Wed Nov 14 22:48:12 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk
dump/LoadMesh methods work except for TagMap, Point elements probably OK but are untested.


Revision 1345 - Directory Listing
Modified Wed Nov 14 07:53:34 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk
Created LoadMesh to read a mesh from a distributed NetCDF file.
Can read nodes but not elements yet.


Revision 1344 - Directory Listing
Modified Wed Nov 14 04:28:25 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk
Now using TMPMEMFREE but still thrashes memory for very large mesh.
Future solution will be to use NetCDF subsetting and less temp memory.


Revision 1343 - Directory Listing
Modified Wed Nov 14 02:48:02 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk
First cut implementation of mesh.dump() using NetCDF.  TagMap not
saved yet.  The code for Points probably works but has not been tested.


Revision 1342 - Directory Listing
Modified Thu Nov 8 23:56:58 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk
improvements on integration schemes for tets and tris: double precision (not all), higher orders

Revision 1341 - Directory Listing
Modified Thu Nov 8 23:55:20 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk
tests for numerical integration added.

Revision 1340 - Directory Listing
Modified Thu Nov 8 06:24:43 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk
Fixed create a local labeling of the DOFs


Revision 1339 - Directory Listing
Modified Wed Nov 7 01:53:12 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk
Modified scons target release_src to include lib/ and include/ since
their presence is required for a build.  Modified
mydomain.print_mesh_info(True) to include more useful info about a
distributed domain.  Added mypde.getOperator().print_matrix_info(True)
to tell about a distributed matrix.



Revision 1338 - Directory Listing
Modified Mon Nov 5 06:32:29 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk
bug in the selection of the order of the output mesh fixed.

Revision 1337 - Directory Listing
Modified Sun Nov 4 23:57:11 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk
Generation of nightly docs failed through the weekend because the access
certificate had expired. I added a comment to tell how to remedy this problem.


Revision 1336 - Directory Listing
Modified Fri Nov 2 06:48:47 2007 UTC (10 years, 1 month ago) by poulet
Original Path: trunk
Chris Hines successfully modified this file to build escript on Cognac using:
* python/2.4.2
* intel-cc/10.0.023
* boost/1.33.1/python2.4.2/icc10.0.023
* netcdf/3.6.2
* intel-mkl
* scsl
* numarray/1.5.2


Revision 1335 - Directory Listing
Modified Fri Nov 2 05:54:25 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk
color ranges were not initialized.

Revision 1334 - Directory Listing
Modified Thu Oct 25 05:08:54 2007 UTC (10 years, 1 month ago) by matt
Original Path: trunk
Initial rewrite of escript unary operations. The rewritten operations are now single-pass.


Revision 1333 - Directory Listing
Modified Tue Oct 23 03:30:15 2007 UTC (10 years, 1 month ago) by matt
Original Path: trunk
scons configuration file for shake45.


Revision 1332 - Directory Listing
Modified Tue Oct 23 03:28:51 2007 UTC (10 years, 1 month ago) by matt
Original Path: trunk
Pow now uses the new binary function interface of C_TensorBinaryOperation.


Revision 1331 - Directory Listing
Modified Tue Oct 23 00:42:15 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk
ArithmeticTuple added. It is useful for certain applications of PCG

Revision 1330 - Directory Listing
Modified Mon Oct 22 04:54:49 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk
more flexible stopping criterium for the PCG

Revision 1329 - Directory Listing
Modified Thu Oct 18 05:39:25 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk
Can now compile with openmp on cyclone. Had to fix a bug in scons in intelc.py
to allow use of Intel compilers.


Revision 1328 - Directory Listing
Modified Mon Oct 15 03:23:15 2007 UTC (10 years, 2 months ago) by matt
Original Path: trunk
Fixed bug in power operation.


Revision 1327 - Directory Listing
Modified Fri Oct 12 07:10:40 2007 UTC (10 years, 2 months ago) by matt
Original Path: trunk
Initial rewrite of binary escript operations.



Revision 1326 - Directory Listing
Modified Mon Oct 1 08:10:41 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk
Implemented domain.print_mesh_info() so we can see the distribution of elements & nodes.
Implemented -DBOUNDS_CHECK to catch an error with periodicN=True.


Revision 1325 - Directory Listing
Modified Mon Oct 1 06:28:24 2007 UTC (10 years, 2 months ago) by matt
Original Path: trunk
DataArray has been removed as it is no longer used. Unit tests have been
updated accordingly with substitute constructs. Any files pertaining to
DataArray have been removed.



Revision 1324 - Directory Listing
Modified Sun Sep 30 23:35:17 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk
Interval mesh type has been removed from the User Guide
Adjusted getVersion method


Revision 1323 - Directory Listing
Modified Thu Sep 27 06:20:29 2007 UTC (10 years, 2 months ago) by matt
Original Path: trunk
Minor inconsistency.


Revision 1322 - Directory Listing
Modified Thu Sep 27 04:40:43 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk
Code now compiles and runs on cyclone.hpcu.uq.edu.au.
Had to remove intelc from the SConstruct, but didn't commit that change.
Changed a couple C++ comments to C comments.


Revision 1319 - Directory Listing
Modified Thu Sep 27 00:27:51 2007 UTC (10 years, 2 months ago) by matt
Original Path: trunk
DataArray is no longer needed. However, the unit tests still require it.


Revision 1318 - Directory Listing
Modified Wed Sep 26 04:39:14 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk
A very quick edit of chapter 3 of the User Guide. More editing needed.


Revision 1317 - Directory Listing
Modified Tue Sep 25 03:41:48 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk
yet another file copied from MPI branch to trunk


Revision 1316 - Directory Listing
Modified Tue Sep 25 03:18:30 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk
Quickly edited chapters 1 and 2 of the User Guide, but it needs more work.
Ran entire document through spell checker.


Revision 1315 - Directory Listing
Modified Tue Sep 25 02:41:13 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk
Copied more files from MPI branch to trunk


Revision 1314 - Directory Listing
Modified Tue Sep 25 01:46:27 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk
Copied a couple more files from MPI branch to trunk


Revision 1313 - Directory Listing
Modified Tue Sep 25 01:44:26 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk
Copied a handful of files from trunk-mpi-branch into trunk


Revision 1312 - Directory Listing
Modified Mon Sep 24 06:18:44 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk
The MPI branch is hereby closed. All future work should be in trunk.

Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.


Revision 1310 - Directory Listing
Modified Mon Sep 24 04:00:47 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk
A few additions to make trunk match trunk-mpi-branch


Revision 1292 - Directory Listing
Modified Thu Sep 6 05:37:33 2007 UTC (10 years, 3 months ago) by ksteube
Original Path: trunk
Commented out setInsideOutOn call in setup because after that it's not
possible to use setInsideOutOff with rotation.


Revision 1270 - Directory Listing
Modified Thu Aug 23 03:13:11 2007 UTC (10 years, 3 months ago) by gross
Original Path: trunk
PlaneSurface accepts now non-Line primitives (stupid mistake to restrict the type. in fact a test for points on a plane is needed

Revision 1250 - Directory Listing
Modified Thu Aug 16 02:54:42 2007 UTC (10 years, 4 months ago) by ksteube
Original Path: trunk
Minor repairs to scons files


Revision 1248 - Directory Listing
Modified Tue Aug 14 05:20:39 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk
Prepend various shareable library locations to PATH rather than appending.

Add (empty) include directory to the repository.

Impact of adding lib, include and esys dirs to repository.
You will need to move these aside in any checked out tree before doing an update.

Revision 1247 - Directory Listing
Modified Tue Aug 14 01:29:20 2007 UTC (10 years, 4 months ago) by ksteube
Original Path: trunk
New python method getVersion() which returns the Subversion revision
from which escript was compiled


Revision 1246 - Directory Listing
Modified Mon Aug 13 22:09:00 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk
Add the esys and lib directories to the repository.
Remove the IS_WINDOWS_PLATFORM from the SConscripts, and
do the logic once in SConstruct.
SConstruct now includes example options files if the hostname_options file is not present. 
This needs some more work for the altix.
The tests now depend upon the build target. This is important it seems, as there appears to be the
possibility of calling linking different libraries
against incompatible versions of sub-libraries. 
This addressed most of the exceptions we were getting on windows.
All the useNetCDF logic is now done by SConstruct.
Made the init_target part of the build alias so that __ini__.py is created on a fresh checkout.

py_tests mostly pass on windows, only need to track down the exception in run_tests.

Revision 1245 - Directory Listing
Modified Mon Aug 13 14:27:20 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk
Add in the netcdf libraries.

Revision 1244 - Directory Listing
Modified Mon Aug 13 07:13:17 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk
use env['PROGSUFFIX'] instead of IS_WINDOWS_PLATFORM for the RunUnitTest builder.


Revision 1243 - Directory Listing
Modified Mon Aug 13 06:48:37 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk
build is the default target, and will build a local installation in the source tree.
A new install target will do a build and install in the system directories. The system dierctories are set up for altix/linux systems with a prefix of '/usr'

Revision 1242 - Directory Listing
Modified Mon Aug 13 06:45:41 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk
Update for the new SConstruct

Revision 1241 - Directory Listing
Modified Mon Aug 13 06:41:05 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk
New options for the default windows + MSC combination.

Revision 1240 - Directory Listing
Modified Mon Aug 13 06:39:29 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk
query python_cmd in env to get the python command.

Revision 1235 - Directory Listing
Modified Mon Aug 13 00:25:29 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk
Started the removal of IS_WINDOWS_PLATFORM, and now insis that the windows options file be kept up to date, and be complete.

boost_libs -> boost_lib.

Revision 1234 - Directory Listing
Modified Mon Aug 13 00:22:25 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk
Based on http://www.scons.org/wiki/DoxygenBuilder, this is a useful tool for managing doxygen builds.

Revision 1233 - Directory Listing
Modified Mon Aug 13 00:20:22 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk
Much more extensive extensions that can make SConscripts much shorter.

Revision 1232 - Directory Listing
Modified Fri Aug 10 06:44:04 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk
Reduce the number of IS_WINDOWS_PLATFORM references in SConstruct.
Change path to boost etc in windows_mscv71_options.py 
Some of these changes are present in windows_mscv71_options.py, more changes needed once I get the mscv71 build going properly.

Revision 1221 - Directory Listing
Modified Fri Aug 3 00:27:20 2007 UTC (10 years, 4 months ago) by ksteube
Original Path: trunk
Disabled HRZ lumping until the tests pass


Revision 1220 - Directory Listing
Modified Thu Aug 2 04:46:20 2007 UTC (10 years, 4 months ago) by btully
Original Path: trunk
Included HRZ lumping scheme for the LUMPED solver.


Revision 1219 - Directory Listing
Modified Wed Aug 1 00:39:47 2007 UTC (10 years, 4 months ago) by ksteube
Original Path: trunk
Adjustments to the nightly tests and document generation


Revision 1218 - Directory Listing
Modified Wed Jul 18 01:01:41 2007 UTC (10 years, 5 months ago) by ksteube
Original Path: trunk
New script to be run via cron on shake71 to generate all documentation
nightly.  This generates the docs available on the twiki page EsysLocalUser


Revision 1217 - Directory Listing
Modified Wed Jul 18 00:47:01 2007 UTC (10 years, 5 months ago) by ksteube
Original Path: trunk
Can now install into /usr with scons prefix=/usr and get a typical
python package install. Setting PYTHONPATH and LD_LIBRARY_PATH is
not necessary.


Revision 1216 - Directory Listing
Modified Thu Jul 12 06:20:08 2007 UTC (10 years, 5 months ago) by ksteube
Original Path: trunk
Build now works on systems where doxygen is not available.
Repaired target scons guide_html_index to create HTML user guide.


Revision 1215 - Directory Listing
Modified Thu Jul 12 01:14:55 2007 UTC (10 years, 5 months ago) by ksteube
Original Path: trunk
Repaired all targets for: scons docs
It runs all these targets: release_examples guide_pdf api_epydoc api_doxygen


Revision 1214 - Directory Listing
Modified Wed Jul 11 04:21:45 2007 UTC (10 years, 5 months ago) by ksteube
Original Path: trunk
Add image missing from user guide


Revision 1213 - Directory Listing
Modified Thu Jul 5 04:18:34 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
Added a reference directory for sample images for the unit testing.

Revision 1212 - Directory Listing
Modified Thu Jul 5 00:41:19 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
Made some minor changes to the guide.

Revision 1211 - Directory Listing
Modified Wed Jul 4 05:16:46 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
- Fixed some minor bugs.
- Added a new feature called 'MapOnScalarClipWithRotation' that clips a two-dimensional data with a scalar value and subsequently rotating it to create a three-dimensional effect.
- Corresponding examples, test cases and documentation of the new module have also been added.

Revision 1210 - Directory Listing
Modified Tue Jul 3 05:47:34 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
Made some minor changes.

Revision 1209 - Directory Listing
Modified Mon Jul 2 05:46:49 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
Fixed a minor problem with regards to the Carpet module distinguishing between 2D and 3D data.

Revision 1208 - Directory Listing
Modified Mon Jul 2 04:46:10 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
Made some changes to the Carpet module. When 3D data is used, a cut will be performed using a plane before deformation occurs on the plane. However, if 2D data is used a cut will NOT be performed and deformation will instead occur immediately. 

Pyvisi distinguishes 2D from 3D data by retrieving the length of the z-axis. A 2D data will have a z-axis length of zero while a 3D data will have a z-axis length of non-zero. There are exceptions to these rules where some 2D data may have a non-zero z-axis length. However, such exceptions are not taken into account at this stage.


Revision 1207 - Directory Listing
Modified Mon Jul 2 02:02:26 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
Made some changes to the Carpet module. When 3D data is used, a cut will be performed using a plane before deformation occurs on the plane. However, if 2D data is used a cut will NOT be performed and deformation will instead occur immediately. 

Pyvisi distinguishes 2D from 3D data by retrieving the length of the z-axis. A 2D data will have a z-axis length of zero while a 3D data will have a z-axis length of non-zero. There are exceptions to these rules where some 2D data may have a non-zero z-axis length. However, such exceptions are not taken into account at this stage.


Revision 1206 - Directory Listing
Modified Fri Jun 29 06:09:19 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
Updated the guide further.

Revision 1205 - Directory Listing
Modified Fri Jun 29 04:44:04 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
- Fixed a minor bug in the Velocity module.
- Added the Rectangle module which enables rectangles to be created.
- Added corresponding examples and test cases for the Rectangle.
- Updated the guide and necessary epydocs.




Revision 1204 - Directory Listing
Modified Sat Jun 23 11:43:12 2007 UTC (10 years, 5 months ago) by gross
Original Path: trunk
a frame for an improved lumping procedure added.

Revision 1203 - Directory Listing
Modified Thu Jun 21 23:17:16 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
Made some minor changes to the exampels.

Revision 1202 - Directory Listing
Modified Thu Jun 21 04:44:17 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
Minor change to the movie example.

Revision 1201 - Directory Listing
Modified Thu Jun 21 04:42:56 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
Added a pyvisi readme file for internal use (by Ken).

Revision 1200 - Directory Listing
Modified Thu Jun 21 02:04:47 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
Corrected a small epydoc error.

Revision 1199 - Directory Listing
Modified Wed Jun 20 05:01:30 2007 UTC (10 years, 5 months ago) by jongui
Original Path: trunk
- Updated the epydocs and guide.
Deleted redundant files and methods.
Tidied up the codes.

Revision 1198 - Directory Listing
Modified Tue Jun 19 00:24:29 2007 UTC (10 years, 6 months ago) by btully
Original Path: trunk
Updated Rec9 Shape Functions.
Included a new definition for Hex27 Reference Element and associated Shape Functions.


Revision 1197 - Directory Listing
Modified Mon Jun 18 02:08:34 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
Update the way movies are generated. Please refer to the examples. 

The user can now either specify the image range(first and last images inclusive):
mov.imageRange(input_directory = PYVISI_EXAMPLE_IMAGES_PATH,
        first_image = IMAGE_NAME + "000938.jpg",
		last_image = IMAGE_NAME + "000948.jpg")
mov.makeMovie(os.path.join(PYVISI_EXAMPLE_IMAGES_PATH, "movie.mpg"))

or the user can specify a list of images:

lst = ['image1.jpg', 'image5.jpg', 'image7.jpg]
mov.imageList(input_directory = PYVISI_EXAMPLE_IMAGES_PATH, image_list = lst)
mov.makeMovie(os.path.join(PYVISI_EXAMPLE_IMAGES_PATH, "movie.mpg"))



Revision 1194 - Directory Listing
Modified Thu Jun 14 05:53:49 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
- Fixed a minor bug in the Camera module.
- Added some extra capability to the Movie module.
- The Camera module now has the capability to perform parallel projection by calling the 'parallelProjectionOn' method.
- The Camera at this stage is only capable of zooming towards the rendered object using 'dolly'. However, it appears that 'dolly' cannot be used to perform zooming out.

Revision 1193 - Directory Listing
Modified Wed Jun 13 22:35:25 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
Added the missing movie module.

Revision 1191 - Directory Listing
Modified Tue Jun 12 05:54:41 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
A movie can now be generated within the python script itself by creating an instace of 'Movie'. The 'Movie' instance will in turn execute the 'ppmtompeg' command. The corresponding tests and examples have also been added.

Revision 1190 - Directory Listing
Modified Fri Jun 8 05:47:25 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
Fixed a minor bug in the scene module.

Revision 1189 - Directory Listing
Modified Thu Jun 7 05:31:25 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
A Scalar Bar can now be displayed by creating an instance of a 'Legend'. The Scalar Bar can either show the scalar data range or vector data range. Corresponding examples and tests have also been added.

Revision 1186 - Directory Listing
Modified Fri Jun 1 03:26:23 2007 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk
More mods to compile options for ac.apac.edu.au


Revision 1185 - Directory Listing
Modified Thu May 31 04:33:31 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk
once again: some changes to get the tests passed on windows.

Revision 1184 - Directory Listing
Modified Thu May 31 04:28:37 2007 UTC (10 years, 6 months ago) by matt
Original Path: trunk
Fixed netCDF compile option.


Revision 1181 - Directory Listing
Modified Wed May 30 06:08:44 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk
some more test for vtk interface

Revision 1180 - Directory Listing
Modified Wed May 30 05:53:38 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk
some new test data

Revision 1179 - Directory Listing
Modified Wed May 30 05:10:02 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk
some debug print outs removed.

Revision 1178 - Directory Listing
Modified Wed May 30 05:03:17 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk
bug in visualization interface test fixed.

Revision 1177 - Directory Listing
Modified Wed May 30 05:01:29 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk
debug print out removed.

Revision 1175 - Directory Listing
Modified Wed May 30 03:51:11 2007 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk
Adjustments for ac.apac.edu.au paths


Revision 1174 - Directory Listing
Modified Tue May 29 07:05:59 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk
more modifications to the test rquired by the new intergartion schemes

Revision 1173 - Directory Listing
Modified Mon May 28 03:29:57 2007 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk
Reverted to revision 1170, update in 1171 was a mistake


Revision 1172 - Directory Listing
Modified Mon May 28 00:03:32 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
Made some minor changes to the tests.

Revision 1171 - Directory Listing
Modified Fri May 25 06:55:05 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk
some modifications to the tests to consider the new integration schemes for tri and tet

Revision 1170 - Directory Listing
Modified Fri May 25 05:24:57 2007 UTC (10 years, 6 months ago) by btully
Original Path: trunk
Added new methods for integration of Tri's and Tet's For Order 2 and 3.
NB: There is a conflict in the testing of the getNormal() function. On consultation with Lutz, we have concluded this is an issue with the test rather than the new methods.


Revision 1169 - Directory Listing
Modified Fri May 25 03:44:14 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
Added another example that shows the use of multiple modules in a script together.

Revision 1168 - Directory Listing
Modified Thu May 24 05:36:42 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
Pyvisi now has the capability to save the rendered objects as VRML (.wrl) and OpenInventor (.iv) file types. Corresponding tests have also been added.

Revision 1167 - Directory Listing
Modified Thu May 24 01:04:17 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
Deleted remaining scenes from the test cases and updated the guide.

Revision 1166 - Directory Listing
Modified Thu May 24 00:56:00 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
Updated some test.

Revision 1164 - Directory Listing
Modified Thu May 24 00:38:40 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
As it turned out XAUTHORITY has to be imported into scons, too.



Revision 1163 - Directory Listing
Modified Wed May 23 23:56:39 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk
import of DISPLAY environment variable into scons ENV added. This is required to run pyvisi tests under XGL

Revision 1162 - Directory Listing
Modified Wed May 23 05:31:15 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
Added a script that executes all test scripts.

Revision 1161 - Directory Listing
Modified Wed May 23 04:17:52 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
Made some minor updates to the test.

Revision 1160 - Directory Listing
Modified Wed May 23 00:44:01 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk
The OMP_NUM_THREADS environment variable is now imported into the scons evironment.

Revision 1159 - Directory Listing
Modified Tue May 22 05:09:31 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
Some update to test_escript.

Revision 1158 - Directory Listing
Modified Tue May 22 04:24:01 2007 UTC (10 years, 6 months ago) by jongui
Original Path: trunk
Made some changes to fix the memory leak problem. However, the problem still persists for run_escript_with_lazy_evaluation.py, run_streamline.py and run_streamline_with_lazy_evaluation.py.


Revision 1157 - Directory Listing
Modified Mon May 21 06:45:52 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk
ops, wrong name

Revision 1156 - Directory Listing
Modified Mon May 21 06:45:14 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk
node label optimization

Revision 1154 - Directory Listing
Modified Fri May 18 02:46:32 2007 UTC (10 years, 7 months ago) by jongui
Original Path: trunk
Updated the in-line documentation and guide.

Revision 1153 - Directory Listing
Modified Thu May 17 06:33:54 2007 UTC (10 years, 7 months ago) by jongui
Original Path: trunk
Made some minor modifications and fixed minor bugs. Most tests appear to pass on the Altix although there are two tests which occasionally throw an error related to memory corruption.

Revision 1152 - Directory Listing
Modified Thu May 17 04:46:04 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
some features for PMDCRC project

Revision 1151 - Directory Listing
Modified Thu May 17 04:11:18 2007 UTC (10 years, 7 months ago) by jongui
Original Path: trunk
More update.

Revision 1150 - Directory Listing
Modified Thu May 17 00:42:34 2007 UTC (10 years, 7 months ago) by jongui
Original Path: trunk
Added the new images.

Revision 1149 - Directory Listing
Modified Thu May 17 00:30:15 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
some fixes from the windows version

Revision 1148 - Directory Listing
Modified Wed May 16 22:45:33 2007 UTC (10 years, 7 months ago) by jongui
Original Path: trunk
Added the updated files for pyvisi and removed some incorrect reference images.

Revision 1147 - Directory Listing
Modified Wed May 16 06:39:11 2007 UTC (10 years, 7 months ago) by ksteube
Original Path: trunk
Added back in some files that were accidentally deleted.


Revision 1146 - Directory Listing
Modified Wed May 16 05:07:02 2007 UTC (10 years, 7 months ago) by jongui
Original Path: trunk
Removed the old version of pyvisi.

Revision 1144 - Directory Listing
Modified Wed May 16 04:51:19 2007 UTC (10 years, 7 months ago) by jongui
Original Path: trunk
Added updated files.

Revision 1143 - Directory Listing
Modified Wed May 16 04:49:55 2007 UTC (10 years, 7 months ago) by jongui
Original Path: trunk
some cleanup.

Revision 1141 - Directory Listing
Modified Tue May 15 04:24:51 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
Some changes to make things run on windows. There is still a problem with netcdf an long file names on windows but there is the suspicion that this is a bigger problem related to boost (compiler options). In fact runs with large numbers of iteration/time steps tend to create seg faults. 

Revision 1139 - Directory Listing
Modified Mon May 14 05:12:53 2007 UTC (10 years, 7 months ago) by ksteube
Original Path: trunk
Finished renaming of boost_lib to boost_libs and boost_lib_path to boost_libs_path.


Revision 1138 - Directory Listing
Modified Mon May 14 04:15:04 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
 * some of the sys.exit calls removed.
 * some modifications on the test (and more work needs to be done, use test/python/run_carpet.py as an example) to get them going with scons 

-> things seems to run on windows XP.

Revision 1137 - Directory Listing
Modified Thu May 10 08:11:31 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
This version passes the tests on windows except for 

   * vtk
   * netCDF

The version needs to be tested on altix and linux

Revision 1135 - Directory Listing
Modified Wed May 9 01:58:32 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
These are still modifications for windows.

The run_generators.py and run_visualization_interface.py pass now. There is no need for the win32 reference directory. 

Revision 1134 - Directory Listing
Modified Wed May 9 01:44:04 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
fixed a bag in the extra bits to make the ordering unique. This does not effect the correctness of the result but makes sure that the results are independent from the sorting algorithm.

Revision 1133 - Directory Listing
Modified Tue May 8 07:19:33 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
Changes needed for windows. This still does not work on and has not run on linux and the altix. 
 
There are a few changes in names in the scons script, in particular _libs is used rather than _lib and _libs is always a list. By default on windows MSVC is used. The location of python is at C:\Program Files\python<version>, boost at C:\Program Files\boost and netcdf at C:\Program Files\netcdf. 

 

Revision 1132 - Directory Listing
Modified Tue May 8 05:58:46 2007 UTC (10 years, 7 months ago) by phornby
Original Path: trunk
c flags to suppress pragma warnings

Revision 1131 - Directory Listing
Modified Tue May 8 05:52:21 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
netcdf c++ interface removed

Revision 1130 - Directory Listing
Modified Tue May 8 04:23:51 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk


Revision 1129 - Directory Listing
Modified Tue May 8 04:23:25 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk


Revision 1128 - Directory Listing
Modified Tue May 8 04:22:53 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk


Revision 1127 - Directory Listing
Modified Tue May 8 03:23:12 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk


Revision 1125 - Directory Listing
Modified Thu May 3 05:40:30 2007 UTC (10 years, 7 months ago) by ksteube
Original Path: trunk
Print more convergence info in the verbose output


Revision 1123 - Directory Listing
Modified Thu May 3 04:13:52 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
PropertySets cann now be created wirout an intial 
set of items.



Revision 1122 - Directory Listing
Modified Tue May 1 03:21:04 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
As the LinearPDE uses coefficients as reduced even if they are handed
over as full the projector runs into a problem when reduced and full
arguments are used in the same projector. Now the projector resets the
coefficients befor starting the projection.



Revision 1119 - Directory Listing
Modified Tue Apr 24 08:58:05 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
debug print removed.

Revision 1118 - Directory Listing
Modified Tue Apr 24 08:55:04 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
problem with reset of faulty PDE rhs fixed.

Revision 1116 - Directory Listing
Modified Mon Apr 23 03:36:34 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk
Interporpolation from full to reduced integration order added.



Revision 1115 - Directory Listing
Modified Sun Apr 22 07:18:30 2007 UTC (10 years, 7 months ago) by jongui
Original Path: trunk
The problem regarding the increasing use of memory when Map is instantiated is partially fixed. Some problems still persists when the Map instance invoke methods.

Therefore, the run_map.py auto test have been disabled for the time being.

Revision 1114 - Directory Listing
Modified Sun Apr 22 05:16:05 2007 UTC (10 years, 7 months ago) by jongui
Original Path: trunk
Started doing some changes to the modules due to the problem of the continuous increase in memory usage when reading directly from escript objects.

Revision 1113 - Directory Listing
Modified Thu Apr 19 08:53:24 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Added some epydocs.

Revision 1112 - Directory Listing
Modified Thu Apr 19 06:31:49 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Made some updates to the guide.

Revision 1111 - Directory Listing
Modified Thu Apr 19 05:28:19 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Some clean up.

Revision 1110 - Directory Listing
Modified Thu Apr 19 05:24:28 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Some test for the logo.

Revision 1109 - Directory Listing
Modified Thu Apr 19 04:21:43 2007 UTC (10 years, 8 months ago) by btully
Original Path: trunk


Revision 1108 - Directory Listing
Modified Thu Apr 19 04:02:11 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Added modules that allows logos (i.e. access logo) to be inserted together with the rendered object. An example on how to use the 'Logo' class has also been provided.


Revision 1107 - Directory Listing
Modified Thu Apr 19 02:14:18 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
Small bug in ReadMeh call fixed.
Test for typ of verbose argument in pdetools.SaddlePointSolver added.



Revision 1106 - Directory Listing
Modified Thu Apr 19 01:54:57 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
I take it all back! Ignore the last check in.



Revision 1105 - Directory Listing
Modified Thu Apr 19 01:10:49 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
The modification fixes a problem with the garbage collection in python. 
The problem seems that a default value of a method argument is seen as
being dependend on the the instance of the class. This produces a
circular dependence and can stop the garbage collection to delete the
object. The situation becomes in particulary bad if the class provides a
__del__ method as it is not clear where to break the circle.

We need to revisit all python classes in escript & Co to remove this
possible problem. 



Revision 1104 - Directory Listing
Modified Wed Apr 18 04:32:35 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Removed test for reading escript objects directly using 'setData'. There seems to be a problem with the usage of memory.

Revision 1103 - Directory Listing
Modified Wed Apr 18 04:31:06 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Some updates.

Revision 1102 - Directory Listing
Modified Tue Apr 17 07:16:49 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
some cleanup.

Revision 1101 - Directory Listing
Modified Tue Apr 17 07:11:02 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Added some test for reading escript objects.

Revision 1100 - Directory Listing
Modified Tue Apr 17 05:36:24 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Fixed the problem related to the use of point and cell data. Both point and cell data should now be able to work properly together. i.e. plotting a velocity field using 'vector point data' but coloring the arrows using 'scalar cell data'.

Revision 1099 - Directory Listing
Modified Tue Apr 17 01:45:08 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Upated some examples.

Revision 1098 - Directory Listing
Modified Mon Apr 16 23:15:23 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
add a few #pragma ivdep which should speed up MV but cannot confiirm this on Pentium





Revision 1097 - Directory Listing
Modified Mon Apr 16 23:03:55 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Added more examples reading directly from escript objects.

Revision 1095 - Directory Listing
Modified Mon Apr 16 06:32:24 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Added some example scripts reading directly from escript objects.

Revision 1094 - Directory Listing
Modified Mon Apr 16 06:04:25 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Fixed the bug related to the use of the 'setData' method in the DataCollector. Reading directly from escript objects should now work.

Revision 1093 - Directory Listing
Modified Sun Apr 15 23:58:53 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Fixed a minor bug related to clipping vector and tensor data.

Revision 1092 - Directory Listing
Modified Fri Apr 13 03:39:49 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
the useless profilinf for data.cpp removed (doDebug=yes should work again)
and a small bug in the gmsh reader fixed.


Revision 1091 - Directory Listing
Modified Fri Apr 13 01:26:22 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
More updates to the guide.

Revision 1086 - Directory Listing
Modified Thu Apr 12 05:54:14 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Performed some cleanup.

Revision 1085 - Directory Listing
Modified Thu Apr 12 05:36:31 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
More minor fixes to Camera.

Revision 1084 - Directory Listing
Modified Thu Apr 12 05:19:22 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Updated the guide and fixed a minor bug with the use of the Camera.

Revision 1083 - Directory Listing
Modified Thu Apr 12 01:15:01 2007 UTC (10 years, 8 months ago) by ksteube
Original Path: trunk
Install prefix: can now use

	scons prefix=/some/dir

to build and install into another directory.


Revision 1082 - Directory Listing
Modified Wed Apr 11 22:33:52 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Made some updates to the guide.

Revision 1081 - Directory Listing
Modified Wed Apr 11 06:13:46 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Made some updates to the guide.

Revision 1080 - Directory Listing
Modified Wed Apr 11 06:07:30 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
small typo fixed.

Revision 1079 - Directory Listing
Modified Tue Apr 10 04:27:31 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Updated more epydocs and the user guide. At this stage, a DataCollector should only be used to read either point data or cell data but not both. If both point and cell data are read using the same DataCollector, the object rendered may be incorrect.

Revision 1078 - Directory Listing
Modified Thu Apr 5 06:18:47 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Added and updated some epydocs.

Revision 1077 - Directory Listing
Modified Wed Apr 4 13:31:39 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
There seems to be some problems with regards to reading data directly from an ESCRIPT object using the 'setData' method in the DataCollector. Please avoid using this method at this stage.

Revision 1076 - Directory Listing
Modified Wed Apr 4 06:40:33 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Some updates.

Revision 1075 - Directory Listing
Modified Tue Apr 3 02:47:39 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Some minor cleanup.

Revision 1074 - Directory Listing
Modified Fri Mar 30 02:44:42 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Added tests for the text and image modules, including their corresponding sample output.

Revision 1072 - Directory Listing
Modified Thu Mar 29 06:44:30 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
PDE assemblage for reduced integration order + tests added.



Revision 1071 - Directory Listing
Modified Thu Mar 29 04:26:58 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Added sample output images for the tests.

Revision 1070 - Directory Listing
Modified Thu Mar 29 04:20:50 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Added tests for the camera, carpet, contouir, ellipsoid, light, streamline and velocity modules.

Revision 1069 - Directory Listing
Modified Thu Mar 29 04:16:38 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Perform some cleanup.

Revision 1068 - Directory Listing
Modified Wed Mar 28 22:26:00 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Added test for the velocity module.

Revision 1067 - Directory Listing
Modified Wed Mar 28 04:14:13 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Added some test for the datacollector, map and scene modules.

Revision 1066 - Directory Listing
Modified Wed Mar 28 00:59:19 2007 UTC (10 years, 8 months ago) by ksteube
Original Path: trunk
Second draft of pycad document...probably needs more work


Revision 1065 - Directory Listing
Modified Tue Mar 27 09:04:56 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
tests VTK + DX files for reduced integration order added. Tests pass.

Revision 1064 - Directory Listing
Modified Tue Mar 27 06:21:02 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
test for reduced integration order for grad, interpolate and integrate added.
Bug shown by the tests have been fixed.



Revision 1063 - Directory Listing
Modified Mon Mar 26 08:29:18 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
test for creation of reduced function spaces added.
tests for dumping data on reduced function spaces added.
This showed a small bug with compilation setting for compilation with netCDF which is fixed



Revision 1062 - Directory Listing
Modified Mon Mar 26 06:17:53 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
reduced integration schemes are implemented now for grad, integrate, etc. Tests still to be added.

Revision 1061 - Directory Listing
Modified Mon Mar 26 05:32:22 2007 UTC (10 years, 8 months ago) by ksteube
Original Path: trunk
Commented the example


Revision 1060 - Directory Listing
Modified Mon Mar 26 05:11:10 2007 UTC (10 years, 8 months ago) by ksteube
Original Path: trunk
A new pycad example which shows how to have an object with a cutout area


Revision 1059 - Directory Listing
Modified Fri Mar 23 11:01:53 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
first steps toward reduced element integration order. The escript bit is done but the finley part still needs work.

Revision 1058 - Directory Listing
Modified Fri Mar 23 04:06:56 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Locator argument fixed.

Revision 1057 - Directory Listing
Modified Thu Mar 22 23:57:37 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
The use of StructuredPoints and Probe filter have been removed and replaced with MaskPoints completely. The use of the method 'setDimension' is no longer valid and should be replace with 'setRatio'.

Revision 1056 - Directory Listing
Modified Thu Mar 22 06:52:08 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Removed the use of StructuredPointsProbe and replaced it with MaskPoints in the Ellipsoid module. The masking of arrows and ellipsoids should now work for both point and cell data.

Revision 1055 - Directory Listing
Modified Thu Mar 22 04:49:23 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
a bit of work towards the bandwidth optimizer

Revision 1054 - Directory Listing
Modified Thu Mar 22 03:41:46 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Removed the use of StructuredPointsProbe and replaced it with MaskPoints in the Velocity module. StructuredPointsProbe does NOT work well in all instances.

Revision 1053 - Directory Listing
Modified Thu Mar 22 01:14:43 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Removed the use of StructuredPointsProbe and replaced it with MaskPoints in the Velocity module. StructuredPointsProbe does NOT work well in all instances.

Revision 1052 - Directory Listing
Modified Wed Mar 21 23:45:29 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
Teo problems in the TagMap class fixed:

1) keyword argument map has been renamed to mapping (as map is a python keyword)
2) self.__mapping is now a copy of the argument in __init__. Otherwise the default 
   value for mapping is changed if self.__mapping is altered.



Revision 1051 - Directory Listing
Modified Wed Mar 21 21:56:54 2007 UTC (10 years, 8 months ago) by jongui
Original Path: trunk
Velocity module does not work properly with all types of files yet.

Revision 1050 - Directory Listing
Modified Tue Mar 20 09:39:11 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
rename so compilation does not fail

Revision 1049 - Directory Listing
Modified Tue Mar 20 03:00:18 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
bandwidth optimizer has been moved back (Lutz: switch on your brain.
)

Revision 1048 - Directory Listing
Modified Tue Mar 20 02:59:14 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
bandwidth optimizer has been moved.

Revision 1047 - Directory Listing
Modified Tue Mar 20 02:54:09 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
some clean-up

Revision 1046 - Directory Listing
Modified Tue Mar 20 02:52:24 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk
the finley benchmarks have been moved into a seperate directory to get keep them out off the building process.

Revision 1045 - Directory Listing
Modified Tue Mar 20 01:30:58 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
some modifications on the pycad implementation to make it easier to build
interfaces for other mesh generators. The script statement generation is now
done by the Design and not the Primitive classes.



Revision 1044 - Directory Listing
Modified Mon Mar 19 07:29:31 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
clear name tagging is supported now.

Revision 1043 - Directory Listing
Modified Mon Mar 19 06:46:34 2007 UTC (10 years, 9 months ago) by jongui
Original Path: trunk
Map and Contour now able to display cell data correctly. At this stage, it appears that the probe filter cannot be applied on cell data as a segmentation fault will be thrown.

Revision 1042 - Directory Listing
Modified Mon Mar 19 03:50:34 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
a small fix which deals with the case that a Model class
does not take the argument debug.




Revision 1041 - Directory Listing
Modified Fri Mar 16 09:11:10 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
Change the netcdf path options to reflect the svn controlled netcdf path.



Revision 1040 - Directory Listing
Modified Fri Mar 16 08:43:08 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
Now links against netcdf and netcdf_cpp on windows.



Revision 1039 - Directory Listing
Modified Fri Mar 16 08:42:17 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
Just trying to get the intelc version going.



Revision 1038 - Directory Listing
Modified Fri Mar 16 05:15:37 2007 UTC (10 years, 9 months ago) by jongui
Original Path: trunk
Added more examples.

Revision 1037 - Directory Listing
Modified Fri Mar 16 05:00:32 2007 UTC (10 years, 9 months ago) by jongui
Original Path: trunk
Added the updated files.

Revision 1036 - Directory Listing
Modified Fri Mar 16 04:55:44 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
msvc7.1 options file for windows.



Revision 1035 - Directory Listing
Modified Fri Mar 16 04:54:17 2007 UTC (10 years, 9 months ago) by jongui
Original Path: trunk
Performed some cleanup of old files.

Revision 1034 - Directory Listing
Modified Wed Mar 14 23:49:20 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
In VC++ boost has problems with numarray arguments from python. This
fixes that problem by taking python::object arguments from the python
level and converting it into python::numeric::array on the C++ level.
This hasn't been tested with VC++ yet.

Moreover the two Data methods dealing with big numarrays as argument and
return value have been removed.



Revision 1033 - Directory Listing
Modified Wed Mar 14 08:38:00 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
Options for the IVEC SGI altix.



Revision 1032 - Directory Listing
Modified Wed Mar 14 06:32:09 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
Implement inverse hyp. functions.



Revision 1031 - Directory Listing
Modified Wed Mar 14 06:03:21 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
Finer control of the inverse hyp. functions.



Revision 1030 - Directory Listing
Modified Wed Mar 14 05:14:44 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
Assemble_CopyElementData.c - resolve with my local edits.
Mesh_saveVTK.c - remove debug print.
DataArrayView.h - remove dllim/export declarations on template functions.



Revision 1029 - Directory Listing
Modified Wed Mar 14 05:01:13 2007 UTC (10 years, 9 months ago) by jongui
Original Path: trunk
Fixed problems in relation to updates propagating when multiple files/sources are read.

Revision 1028 - Directory Listing
Modified Wed Mar 14 00:15:24 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
modifications to be compliant with _WIN32. The substitutes for asinh, acosh, atanh are still missing (erf will through an exception)

Revision 1027 - Directory Listing
Modified Tue Mar 13 23:03:46 2007 UTC (10 years, 9 months ago) by ksteube
Original Path: trunk
Generate epydoc every night


Revision 1026 - Directory Listing
Modified Tue Mar 13 08:25:00 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
Data.cpp - indefed out the erf & inv. hyperbolics on windows.
DataAlgorithmAdapterTestCase & DataTestCase - Fix the ifndef on _WIN32 & _INTEL_COMPILER
SConstruct - chamges to the PATH so windows can find DLLs.



Revision 1025 - Directory Listing
Modified Tue Mar 13 08:02:12 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
More windows options.



Revision 1024 - Directory Listing
Modified Tue Mar 13 06:31:50 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
import of PATH

Revision 1023 - Directory Listing
Modified Tue Mar 13 05:43:36 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
netCDF can now be switched off at compilation. Consequently load and dump of data objects is not available then.

Revision 1022 - Directory Listing
Modified Tue Mar 13 02:25:53 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
Now define the destructors for all the Exceptions (sorry guys & gals).



Revision 1021 - Directory Listing
Modified Tue Mar 13 02:06:30 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
some changes to make things run with python 2.3

Revision 1020 - Directory Listing
Modified Mon Mar 12 10:12:36 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
Added explicit destructors to all Exception classes.

Fixed an ifdef in TestCase.cpp

Made the conditional definition of M_PI in LocalOps.h
depend only on M_PI being undefined.

Replace dynamically dimensioned arrays in DataFactory & DataTagged with malloc.

sort() method of list does not take a named argument
(despite the manual's claims to the contary).



Revision 1019 - Directory Listing
Modified Mon Mar 12 10:04:54 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
More windows options changes.



Revision 1018 - Directory Listing
Modified Mon Mar 12 07:36:36 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
Make Name consistent.



Revision 1017 - Directory Listing
Modified Mon Mar 12 07:35:46 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk
Windows options files.



Revision 1010 - Directory Listing
Modified Mon Mar 5 04:01:43 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
simple quad example added

Revision 1009 - Directory Listing
Modified Mon Mar 5 02:13:40 2007 UTC (10 years, 9 months ago) by ksteube
Original Path: trunk
The crontab file that runs the tests every nite


Revision 1006 - Directory Listing
Modified Sun Mar 4 23:15:15 2007 UTC (10 years, 9 months ago) by ksteube
Original Path: trunk
pycad test was failing due to typo and to missing parameter in Design.setOptions


Revision 1005 - Directory Listing
Modified Fri Mar 2 06:50:48 2007 UTC (10 years, 9 months ago) by ksteube
Original Path: trunk
Catch errors when we execute external program gmsh. We don't yet
report what type of error happened.


Revision 1004 - Directory Listing
Modified Thu Mar 1 04:57:31 2007 UTC (10 years, 9 months ago) by jongui
Original Path: trunk
Updated the epydocs, comments and organized codes to ease readability.

Revision 1003 - Directory Listing
Modified Thu Mar 1 01:53:37 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
small fix on the finley gmsh reader for the case of no face elements.

Revision 1002 - Directory Listing
Modified Wed Feb 28 06:51:33 2007 UTC (10 years, 9 months ago) by jongui
Original Path: trunk
Included some try/except statements for error checking and some documentation. Also fixed a bug in DataCollector.

Revision 1001 - Directory Listing
Modified Wed Feb 28 01:15:27 2007 UTC (10 years, 9 months ago) by jongui
Original Path: trunk
Added diffusion_with_pyvisi.py, but the reading of multiple temporary files (created in the background) appears not to work properly. The first file is always displayed.

Revision 1000 - Directory Listing
Modified Wed Feb 28 00:34:42 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
coulomb stress failure added

Revision 999 - Directory Listing
Modified Tue Feb 27 08:12:37 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
start to put some pycad documentation into the users guide

Revision 998 - Directory Listing
Modified Mon Feb 26 07:09:37 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
basic mine scenario

Revision 997 - Directory Listing
Modified Mon Feb 26 06:31:45 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
small small fixes in modellib

Revision 996 - Directory Listing
Modified Mon Feb 26 03:43:13 2007 UTC (10 years, 9 months ago) by jongui
Original Path: trunk
Updated the drivers. Setting the active scalar/vector/tensor is now done in the DataCollector. i.e. 
dc = DataCollector(...)
dc.setFileName(...)
dc.setActiveScalar(...)

The use of setActiveScalar / setActiveVector / setActiveTensor have to be done after the setFileName.

Revision 995 - Directory Listing
Modified Sun Feb 25 22:38:18 2007 UTC (10 years, 9 months ago) by ksteube
Original Path: trunk
Load module for access to gmsh so new test can be run



Revision 994 - Directory Listing
Modified Fri Feb 23 07:00:54 2007 UTC (10 years, 9 months ago) by jongui
Original Path: trunk
Modified the way setActiveScalar, setActiveVector and setActiveTensor are specified. It appears that the attributes have to be set each time a new file is read.

Revision 993 - Directory Listing
Modified Fri Feb 23 06:39:38 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
problem with undefined value fixed.

Revision 992 - Directory Listing
Modified Fri Feb 23 03:35:33 2007 UTC (10 years, 9 months ago) by jongui
Original Path: trunk
Fix minor bugs in relation to setting the active scalar, vector and tensor for both the scaling and coloring options.

Revision 991 - Directory Listing
Modified Wed Feb 21 07:27:15 2007 UTC (10 years, 9 months ago) by matt
Original Path: trunk
Changes to link against NetCDF/3.6.1 module installation with linkage and
compilation consistent with other libraries currently dynamically
linked. Unaligned access error appears linked to escript implementation and
NetCDF/3.6.1 module tests for 64bit file access pass. This module differs from
the previous module as assertions are disabled and compiler optimisation is
invoked _without_ symbol table/lookup.


Revision 990 - Directory Listing
Modified Wed Feb 21 04:27:52 2007 UTC (10 years, 9 months ago) by ksteube
Original Path: trunk
Cleaned up the python in-line doc to make epydoc work better

Configured for shake71 to find NetCDF libraries


Revision 988 - Directory Listing
Modified Tue Feb 20 07:21:12 2007 UTC (10 years, 9 months ago) by jongui
Original Path: trunk
Both point and cell data should now work properly with Pyvisi. Some testing have been done but a more extensive test will be done at a later stage.

Revision 987 - Directory Listing
Modified Tue Feb 20 06:19:30 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
file missing

Revision 986 - Directory Listing
Modified Tue Feb 20 06:18:52 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
first steps toward the model

Revision 985 - Directory Listing
Modified Tue Feb 20 04:02:10 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
 small bug for openmp fixed.

Revision 984 - Directory Listing
Modified Tue Feb 20 03:33:45 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
warning in dump and load at altix fixed.

Revision 983 - Directory Listing
Modified Tue Feb 20 02:49:08 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
full Data object dump and load now available. Tests added.

Revision 982 - Directory Listing
Modified Mon Feb 19 23:55:52 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
data object load checks for sample  ordering now.

Revision 981 - Directory Listing
Modified Mon Feb 19 06:52:25 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
extraction records added

Revision 980 - Directory Listing
Modified Mon Feb 19 05:12:38 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk
bug in Simulation fixed.

Revision 979 - Directory Listing
Modified Sun Feb 18 23:24:47 2007 UTC (10 years, 9 months ago) by ksteube
Original Path: trunk
Made it easier to glance at the logs and see which runs failed



Revision 978 - Directory Listing
Modified Fri Feb 16 07:02:18 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
Corrected some minor bugs. However, another bug was discover in relation to specifying the active scalar/vector/tensor. At this stage it appears that with one XML Reader, only one active scalar can be specified. If more than one is specified with only one XML reader, the rendered objects maybe incorrect. However, more test on this problem is required/

Revision 977 - Directory Listing
Modified Fri Feb 16 06:34:21 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
dion: this is for you.

Revision 976 - Directory Listing
Modified Thu Feb 15 23:57:02 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
direct input of escript objects added.

Revision 975 - Directory Listing
Modified Thu Feb 15 10:18:18 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
first steps towards restart in modelframe

Revision 974 - Directory Listing
Modified Thu Feb 15 04:36:38 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
Addressed the issue raised regarding the specific scalar/vector field used for colouring the rendered object for the velocity module. Users can now specify the specific field.

Revision 973 - Directory Listing
Modified Thu Feb 15 04:06:23 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
Corrected a bug related to the scalar and vector range in the velocity module.

Revision 972 - Directory Listing
Modified Wed Feb 14 05:01:45 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
Added another example that utilises most of the modules available.

Revision 971 - Directory Listing
Modified Wed Feb 14 04:40:49 2007 UTC (10 years, 10 months ago) by ksteube
Original Path: trunk
Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.



Revision 970 - Directory Listing
Modified Wed Feb 14 03:46:01 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
modified some files.



Revision 969 - Directory Listing
Modified Tue Feb 13 23:02:23 2007 UTC (10 years, 10 months ago) by ksteube
Original Path: trunk
Parallelization using MPI for solution of implicit problems.

Parallelization for explicit problems has already been accomplished in
the main SVN branch.

This is incomplete and is not ready for use.



Revision 967 - Directory Listing
Modified Tue Feb 13 09:40:12 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
dump and load of expanded data via netCDF added. some test are still missing.

Revision 966 - Directory Listing
Modified Tue Feb 13 05:45:18 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
ops! escript/src/DataExpanded.cpp should not be in there

Revision 965 - Directory Listing
Modified Tue Feb 13 05:38:45 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
johns local setting removed.

Revision 964 - Directory Listing
Modified Tue Feb 13 05:10:26 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
The set/getRefVal functions of Data objects have been removed (mainly to avoid later problems with MPI).
Moreover, a faster access to the reference id of samples has been introduced. I don't think that anybody will
profit form this at this stage but it will allow a faster dump of data objects.



Revision 963 - Directory Listing
Modified Tue Feb 13 04:05:13 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
Added more examples and on-the-fly animation.

Revision 962 - Directory Listing
Modified Tue Feb 13 02:03:23 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
Added some examples.

Revision 961 - Directory Listing
Modified Tue Feb 13 01:58:48 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
Tidied up some codes

Revision 960 - Directory Listing
Modified Tue Feb 13 01:39:05 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
typo in file name fixed

Revision 959 - Directory Listing
Modified Tue Feb 13 01:38:39 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
typo in file name fixed

Revision 958 - Directory Listing
Modified Tue Feb 13 01:08:39 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
bruce is switched off for now as it doesn't really do anything useful yet.

Revision 957 - Directory Listing
Modified Tue Feb 13 00:33:00 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
some test about lists added.

Revision 956 - Directory Listing
Modified Tue Feb 13 00:03:40 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
Older versions of numarray dont have the "all" function. The test has been modified to run for these order versions. too.



Revision 955 - Directory Listing
Modified Mon Feb 12 03:54:54 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
some examples for pycad added

Revision 954 - Directory Listing
Modified Fri Feb 9 08:56:14 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
testing for completness if simulations improved.

Revision 953 - Directory Listing
Modified Fri Feb 9 08:55:28 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
TagMap is supported by modellib now

Revision 952 - Directory Listing
Modified Wed Feb 7 23:53:24 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
testing of simulation completness improved.

Revision 951 - Directory Listing
Modified Wed Feb 7 05:26:13 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
fixes to get netcdf going on the altix

Revision 950 - Directory Listing
Modified Tue Feb 6 07:01:11 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
escript data objects can now be saved to netCDF files, see http://www.unidata.ucar.edu/software/netcdf/.
Currently only constant data are implemented with expanded and tagged data to follow.
There are two new functions to dump a data object

   s=Data(...)
   s.dump(<filename>)

and to recover it

   s=load(<filename>, domain)

Notice that the function space of s is recovered but domain is still need. 

dump and load will replace archive and extract.

The installation needs now the netCDF installed. 



Revision 949 - Directory Listing
Modified Fri Feb 2 05:33:05 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
Fixed some more bugs and added more epydocs. Testing remains outstanding.

Revision 948 - Directory Listing
Modified Thu Feb 1 07:23:34 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
fixed some bugs in pyvisi and added more epydocs.

Revision 947 - Directory Listing
Modified Wed Jan 31 07:17:43 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
added some epydocs.

Revision 946 - Directory Listing
Modified Wed Jan 31 03:08:04 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
added colouring option to use either scalar data or vector data.

Revision 945 - Directory Listing
Modified Tue Jan 30 22:34:27 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
added the feature that enables the dimension to be specified

Revision 944 - Directory Listing
Modified Tue Jan 30 08:57:37 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
PropertySet added

Revision 943 - Directory Listing
Modified Mon Jan 29 07:22:43 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
new pyvisi files

Revision 942 - Directory Listing
Modified Mon Jan 29 07:12:15 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
Restructured the entire pyvisi module to accommodate more features and to make it more scalable for future extensions.

Revision 941 - Directory Listing
Modified Mon Jan 29 04:07:58 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
small fix

Revision 940 - Directory Listing
Modified Mon Jan 29 00:09:08 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
ivdep removed as it produces wrong results with OPenMP

Revision 939 - Directory Listing
Modified Thu Jan 25 04:23:38 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
bug in finley mesh reader fixed

Revision 938 - Directory Listing
Modified Thu Jan 25 03:40:54 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
the FinleyReade accepts now gmsh files (use format="gmsh")
and
Simulations are accepting Models only. Moreover, there is a test now
if a all Models targeted by a model in the simulation or a subsimulation
are included in  simulation or a subsimulation. 



Revision 937 - Directory Listing
Modified Thu Jan 25 03:31:14 2007 UTC (10 years, 10 months ago) by ksteube
Original Path: trunk
Updated for the new PBS queue names


Revision 936 - Directory Listing
Modified Tue Jan 23 22:58:43 2007 UTC (10 years, 10 months ago) by jongui
Original Path: trunk
performed some cleanup

Revision 935 - Directory Listing
Modified Tue Jan 23 09:53:10 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
a missing file

Revision 934 - Directory Listing
Modified Tue Jan 23 09:52:45 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
gmsh file reader for finley

Revision 933 - Directory Listing
Modified Mon Jan 22 07:20:25 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
test for generation of gmsh script added

Revision 932 - Directory Listing
Modified Fri Jan 19 09:27:15 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
Design added. The loops tests are switched off to allow faults.

Revision 931 - Directory Listing
Modified Fri Jan 19 03:06:33 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
pycad supports volumes now.

Revision 930 - Directory Listing
Modified Thu Jan 18 08:12:58 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk
more tests and some modifications on SurfaceLoop

Revision 929 - Directory Listing
Modified Wed Jan 17 07:41:13 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk
reverse orientation added but does not work for 2D yet.

Revision 928 - Directory Listing
Modified Tue Jan 16 08:36:03 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk
more tests but there is a problem with reversing directions.

Revision 927 - Directory Listing
Modified Fri Jan 12 06:32:08 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk
surfaces implemented by no testing yet

Revision 926 - Directory Listing
Modified Fri Jan 12 06:31:37 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk
modelframe support dictonaries with fixed type of key and value. only writing implemented yet

Revision 925 - Directory Listing
Modified Wed Jan 10 22:40:00 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk
testing for CurvedLoop added.

Revision 924 - Directory Listing
Modified Wed Jan 10 03:39:27 2007 UTC (10 years, 11 months ago) by trankine
Original Path: trunk
Win32 port modifications
"or" is not a valid modifier under win intel compiler

* Data.cpp - incorrect "or"s
* DataExpanded.cpp - incorrect "or"s



Revision 923 - Directory Listing
Modified Tue Jan 9 22:50:43 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk
CurveLoop revised and tests added

Revision 922 - Directory Listing
Modified Fri Jan 5 04:23:05 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk
setValueOfDataPoint accepts double value as argument now

Revision 921 - Directory Listing
Modified Fri Jan 5 00:54:37 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk
I have done some clarification on functions that allow to access individual data point values in a Data object. 
The term "data point number" is always local on a MPI process and referes to the value (data_point_in_sample, sample)
as a single identifyer (data_point_in_sample + sample * number_data_points_per_sample). a "global data point number"
referes to a tuple of a processour id and local data point number.

The function convertToNumArrayFromSampleNo has been removed now and convertToNumArrayFromDPNo renamed to getValueOfDataPoint.
There are two new functions:

   getNumberOfDataPoints
   setValueOfDataPoint

This allows you to do things like:

  in=Data(..)
  out=Data(..)
   for i in xrange(in.getNumberOfDataPoints())
       in_loc=in.getValueOfDataPoint(i)
       out_loc=< some operations on in_loc>
       out.setValueOfDataPoint(i,out_loc)


Also mindp  is renamed to  minGlobalDataPoint and there is a new function getValueOfGlobalDataPoint. While in MPI the functions getNumberOfDataPoints and getValueOfDataPoint are working locally on each process (so the code above is executed in parallel).
the latter allows getting a single value across all processors. 



Revision 920 - Directory Listing
Modified Thu Jan 4 00:00:40 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk
small fix on DataSource.fromDom

Revision 919 - Directory Listing
Modified Wed Jan 3 22:54:50 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk
arc test is passing now. The check for colocation is now invariant of direction



Revision 918 - Directory Listing
Modified Wed Jan 3 06:30:00 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk
fixes on ESySXML to get runmodel going.

    * object ids are now local for read and write of XML
    * ParameterSets are now written with class name
    * ParameterSets linked by other ParameterSets (previously only Models) are written now 
    * list are now lists of str (rather than bools), lists with bool, int or float are mapped to numarray
    * numarray are writen with generic types Bool, Int, Float (portability!)



Revision 917 - Directory Listing
Modified Tue Jan 2 02:46:53 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk
some EsysXML input files. rebuild still fails for these files

Revision 916 - Directory Listing
Modified Fri Dec 15 08:25:57 2006 UTC (11 years ago) by gross
Original Path: trunk
curves implemenred and tested.

Revision 915 - Directory Listing
Modified Thu Dec 14 06:12:53 2006 UTC (11 years ago) by gross
Original Path: trunk
more testing on pycad

Revision 914 - Directory Listing
Modified Thu Dec 14 04:38:18 2006 UTC (11 years ago) by gross
Original Path: trunk
access to the number of samples added

Revision 913 - Directory Listing
Modified Tue Dec 12 01:21:00 2006 UTC (11 years ago) by matt
Original Path: trunk
The serial version still requires linking to OpenMP .so's. The cause is
likely an explicit use of the OpenMP api which is unguarded in escript/finley
or in a third-party library.


Revision 912 - Directory Listing
Modified Wed Dec 6 03:29:49 2006 UTC (11 years ago) by gross
Original Path: trunk
modellib.WriteVTK has been rewritten. Instead of only three data objects scalar,
vector, tensor it takes now up to 20 data objects data0 ... data19 and writes it into a 
single VTK file. There is also the possibilty to define individiual name tags name0,..., name19.
If no name is given the corresponding attribute name of the Link target is used. 
This simplifies the usage and increases efficiency.




Revision 911 - Directory Listing
Modified Tue Dec 5 23:39:39 2006 UTC (11 years ago) by gross
Original Path: trunk
*Constrainer models have been renamed to *ConstrainerOverBox to clarify the fact that they are only work over a box domain

Revision 910 - Directory Listing
Modified Fri Nov 24 10:04:09 2006 UTC (11 years ago) by gross
Original Path: trunk
more testing on transformation. rotation uses the right hand rule now.

Revision 909 - Directory Listing
Modified Fri Nov 24 02:15:51 2006 UTC (11 years ago) by jongui
Original Path: trunk
some cleanup

Revision 908 - Directory Listing
Modified Thu Nov 23 06:39:39 2006 UTC (11 years ago) by gross
Original Path: trunk
some fixes

Revision 907 - Directory Listing
Modified Wed Nov 22 09:54:19 2006 UTC (11 years ago) by gross
Original Path: trunk
more testing for transformations added

Revision 906 - Directory Listing
Modified Tue Nov 21 05:34:15 2006 UTC (11 years ago) by gross
Original Path: trunk
some minor fixes

Revision 905 - Directory Listing
Modified Mon Nov 20 11:23:24 2006 UTC (11 years ago) by gross
Original Path: trunk
some tests for pycad added

Revision 904 - Directory Listing
Modified Fri Nov 17 08:49:44 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
MergeConstraints added

Revision 903 - Directory Listing
Modified Fri Nov 17 01:59:49 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
bug with tagged data in vtk and dx writer fixed

Revision 902 - Directory Listing
Modified Thu Nov 16 07:22:08 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
extended functionality

Revision 901 - Directory Listing
Modified Mon Nov 13 08:14:55 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
some small changes

Revision 900 - Directory Listing
Modified Mon Nov 13 08:03:22 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
some clean up

Revision 899 - Directory Listing
Modified Mon Nov 13 08:02:24 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
a first very basic version of pycad

Revision 898 - Directory Listing
Modified Sun Nov 12 23:56:26 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
first checkin of pycad (gmsh pythoin wrapper)

Revision 897 - Directory Listing
Modified Thu Nov 9 07:37:40 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
cfs added

Revision 896 - Directory Listing
Modified Thu Nov 9 05:46:31 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
a new version

Revision 895 - Directory Listing
Modified Thu Nov 9 05:45:55 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
moved to make plave for better version

Revision 894 - Directory Listing
Modified Thu Nov 9 05:45:22 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk


Revision 893 - Directory Listing
Modified Wed Nov 8 08:20:19 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
small bug fixed

Revision 892 - Directory Listing
Modified Wed Nov 8 06:14:29 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk


Revision 891 - Directory Listing
Modified Wed Nov 8 03:26:21 2006 UTC (11 years, 1 month ago) by jongui
Original Path: trunk
more cleanup

Revision 890 - Directory Listing
Modified Tue Nov 7 23:50:29 2006 UTC (11 years, 1 month ago) by jongui
Original Path: trunk
some cleanup in pyvisi

Revision 889 - Directory Listing
Modified Tue Nov 7 23:42:31 2006 UTC (11 years, 1 month ago) by jongui
Original Path: trunk
drivers added

Revision 888 - Directory Listing
Modified Tue Nov 7 08:31:26 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
Problem in Mesh_findMatchingFaces.c fixed:
default tolerance in python interface was set too tight.




Revision 887 - Directory Listing
Modified Thu Nov 2 07:17:07 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
some more work on the slip distribution

Revision 886 - Directory Listing
Modified Thu Nov 2 01:34:58 2006 UTC (11 years, 1 month ago) by jongui
Original Path: trunk
- Fixed a couple of minor bugs but the bug relating to the plane normal still exists.
- Updated the documentation.


Revision 885 - Directory Listing
Modified Wed Nov 1 09:05:51 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
DataSource for modelib added

Revision 884 - Directory Listing
Modified Mon Oct 30 06:37:30 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
simple mesh generator for slip_stress

Revision 883 - Directory Listing
Modified Mon Oct 30 06:12:54 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
new example added

Revision 882 - Directory Listing
Modified Fri Oct 27 08:15:33 2006 UTC (11 years, 1 month ago) by jongui
Original Path: trunk
Fixed some bugs in the camera module but yet to fix bugs in the plane module.


Revision 881 - Directory Listing
Modified Thu Oct 26 02:54:47 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
some small canges to clip function to allow unbounded upper or lower values

Revision 880 - Directory Listing
Modified Wed Oct 25 23:58:16 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
Locator accepts list of locations now

Revision 879 - Directory Listing
Modified Wed Oct 25 03:56:34 2006 UTC (11 years, 1 month ago) by jongui
Original Path: trunk
First prototype of pyvisi is almost done (testing to be done). 
Added all the epydocs and latex files.


Revision 878 - Directory Listing
Modified Wed Oct 25 03:42:56 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
bigger mesh

Revision 877 - Directory Listing
Modified Wed Oct 25 03:06:58 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk
backtraking in the saddlepoint problem (not perfect yet)

Revision 876 - Directory Listing
Modified Thu Oct 19 03:50:23 2006 UTC (11 years, 1 month ago) by ksteube
Original Path: trunk
Added erf (error function) implementation


Revision 875 - Directory Listing
Modified Tue Oct 17 12:42:47 2006 UTC (11 years, 2 months ago) by elspeth
Original Path: trunk
DataSources added to modelframe/EsysXML, and tests to run_xml.py. Currently does not actually handle data 
sources, 
just references. Functionality is in progress. 

EsysXML format (URI can be a local file reference, or a remote reference such as an ftp site, fileformat 
is currently any string descriptor, such as finleyMesh or gmtdata):
 <Parameter type="DataSource">
                        <Name>
                                uritest
                        </Name>
                        <Value>
                                <DataSource>
                                        <URI>
                                                somelocalfile.txt
                                        </URI>
                                        <FileFormat>
                                                text
                                        </FileFormat>
                                </DataSource>
                        </Value>
                </Parameter>



Revision 874 - Directory Listing
Modified Tue Oct 17 12:06:11 2006 UTC (11 years, 2 months ago) by elspeth
Original Path: trunk
Changed numarray xml structure slightly, to fit better with the rest of 
the XML. 
Added lists of booleans as a data type in modelframe.
Fixed bug with bools in modelframe.


Revision 873 - Directory Listing
Modified Mon Oct 16 04:07:33 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
uszawa scheme runs with variable viscosity

Revision 872 - Directory Listing
Modified Sun Oct 15 23:33:14 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
bla

Revision 871 - Directory Listing
Modified Sat Oct 14 08:25:54 2006 UTC (11 years, 2 months ago) by elspeth
Original Path: trunk
Numarray support added to modelframe and tests for numarray added to run_xml.
Numarrays will look like this in ESysXML:

A 2 x 3 numarray will look like this:

<Parameter type="NumArray">
                        <Name>
                                numtest
                        </Name>
                        <Value>
                                <ArrayType>
                                        Float64
                                </ArrayType>
                                <Shape>
                                        2 3
                                </Shape>
                                <Data>
                                        1.0 2.0 3.0 3.0 4.0 5.0
                                </Data>
                        </Value>
                </Parameter>

A numarray vector will look like this:

<Parameter type="NumArray">
                        <Name>
                                numtest
                        </Name>
                        <Value>
                                <ArrayType>
                                        Float64
                                </ArrayType>
                                <Shape>
                                        3
                                </Shape>
                                <Data>
                                        3.0 4.0 5.0
                                </Data>
                        </Value>
                </Parameter>




Revision 870 - Directory Listing
Modified Fri Oct 13 05:01:25 2006 UTC (11 years, 2 months ago) by phornby
Original Path: trunk
g++ on Linux would not swallow

std::string name(boost::python::extract<std::string>(keys[i_data]),0 , MAX_namelength);

so I broke it down for the poor thing:

const std::string &
full_name = boost::python::extract<std::string>(keys[i_data]);
std::string name(full_name, 0, MAX_namelength);




Revision 869 - Directory Listing
Modified Fri Oct 13 03:48:29 2006 UTC (11 years, 2 months ago) by phornby
Original Path: trunk
Add some example options files people can copy and modify for their node.



Revision 868 - Directory Listing
Modified Tue Oct 10 22:32:13 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
new benchmark problem

Revision 867 - Directory Listing
Modified Mon Oct 9 06:50:09 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
a class to solving sattle point problems using uszawa scheme (not functional yet)

Revision 866 - Directory Listing
Modified Mon Oct 9 03:50:20 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
now GEAR scheme is used

Revision 865 - Directory Listing
Modified Fri Oct 6 10:02:18 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
some functions for minimizing a function added. there is still some work required but successfully applied in an aplication

Revision 864 - Directory Listing
Modified Wed Oct 4 01:26:18 2006 UTC (11 years, 2 months ago) by matt
Original Path: trunk
I have further refined the choice of libraries for the serial build. The
correct serial MKL libraries are still unknown.


Revision 863 - Directory Listing
Modified Wed Oct 4 01:01:15 2006 UTC (11 years, 2 months ago) by matt
Original Path: trunk
Added serial execution build options for running on the altix. In doing so, a
minor bug in SConstruct was found and fixed. The correct libraries still need
to be sorted after consulting Lutz and/or Ken.


Revision 862 - Directory Listing
Modified Tue Oct 3 06:01:30 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
bug in mesh generator fixed.

Revision 861 - Directory Listing
Modified Fri Sep 29 06:54:46 2006 UTC (11 years, 2 months ago) by jongui
Original Path: trunk
- Added some simple plane cutting animation and storing them to file.


Revision 860 - Directory Listing
Modified Thu Sep 28 08:17:29 2006 UTC (11 years, 2 months ago) by jongui
Original Path: trunk
- added sample drivers on how to use all of the currently available modules.
- completed the epydocs for all the currently available modules.
- added the rotation feature for camera and plane cutting.



Revision 859 - Directory Listing
Modified Tue Sep 26 02:19:18 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
tests for order2 tetrahedron elements added


Revision 858 - Directory Listing
Modified Tue Sep 26 01:01:39 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
typo fixed

Revision 857 - Directory Listing
Modified Tue Sep 26 01:00:45 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
tests for order1 tetrahedron elements added

Revision 856 - Directory Listing
Modified Tue Sep 26 01:00:36 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
data print shows now the element reference number

Revision 855 - Directory Listing
Modified Fri Sep 22 09:30:06 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
some tests for triangle meshes added

Revision 854 - Directory Listing
Modified Thu Sep 21 05:29:42 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
Some modifications to the binary operations +,-,*/, pow. 
The code is a bit simpler now and more efficient has there is
no reseising required now. the resizing method has been removed as
it is very, very inefficient. Even serial code should be faster now.
It is now forbidden to do an inplace update of scalar data object with an object 
of rank >0 as this is very slow (and does not make much sense). 



Revision 853 - Directory Listing
Modified Wed Sep 20 05:56:36 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk
some performance problems wit openmp fixed.

Revision 852 - Directory Listing
Modified Wed Sep 20 03:23:16 2006 UTC (11 years, 2 months ago) by jongui
Original Path: trunk
added carpet and isosurface



Revision 851 - Directory Listing
Modified Mon Sep 18 07:28:18 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
add some tensor data

Revision 850 - Directory Listing
Modified Sun Sep 17 23:27:00 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
some problems with vtk writer fixed

Revision 849 - Directory Listing
Modified Fri Sep 15 07:11:55 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
Optimized codes and modularized functions to make it more scalable. Partially 
integrated carpet into the existing modules.  


Revision 848 - Directory Listing
Modified Thu Sep 14 22:30:00 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
Completed a prototype of carpet in the testcarpet.py module.



Revision 847 - Directory Listing
Modified Thu Sep 14 07:54:04 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
Added vtkTextProperty to control the style of text and partially completed the carpet module.


Revision 846 - Directory Listing
Modified Mon Sep 11 07:40:09 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
Added modules to diplay image and 2D text. Also added simple drivers for 
creating maps, contours, arrows, image and text.


Revision 845 - Directory Listing
Modified Fri Sep 8 07:13:01 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
Display an image is partially completed.


Revision 844 - Directory Listing
Modified Thu Sep 7 08:32:01 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
with better  mesh

Revision 843 - Directory Listing
Modified Thu Sep 7 05:55:12 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
some timing added

Revision 842 - Directory Listing
Modified Thu Sep 7 05:40:22 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
a little wave propagation simulation

Revision 841 - Directory Listing
Modified Wed Sep 6 09:48:37 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
drucker-prager is working but I am not entirely happy yet as the step size control is very tight.

Revision 840 - Directory Listing
Modified Wed Sep 6 07:52:12 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
Added arrowsOnPlane and mapOnPlane. 


Revision 839 - Directory Listing
Modified Wed Sep 6 04:53:50 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
- Added lookup table spectrum from blue to red and red to blue.
- Updated open scene to scene


Revision 838 - Directory Listing
Modified Tue Sep 5 22:45:55 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
drucker prager works now but there is still some work on the stepsize control needed.

Revision 837 - Directory Listing
Modified Tue Sep 5 07:23:50 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
added more epydocs and improved the way colors are specified in the driver.



Revision 836 - Directory Listing
Modified Mon Sep 4 22:37:25 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
new implementation of the tangential operator and a restriction of time step size change added

Revision 835 - Directory Listing
Modified Mon Sep 4 22:20:28 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
Added more docstrings and updated the way positions, focal point and view angle are specified.



Revision 834 - Directory Listing
Modified Fri Sep 1 09:05:16 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
chenges to drucker-prager

Revision 833 - Directory Listing
Modified Fri Sep 1 07:48:20 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
Added docstrings to openscene.py



Revision 832 - Directory Listing
Modified Fri Sep 1 02:04:46 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
almost there

Revision 831 - Directory Listing
Modified Thu Aug 31 08:47:40 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
some more work to get the drucker-prager going

Revision 830 - Directory Listing
Modified Thu Aug 31 05:41:09 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
Added the light and camera components.



Revision 829 - Directory Listing
Modified Thu Aug 31 01:31:15 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
some changes on the drucker-prager (it does not work yet)

Revision 828 - Directory Listing
Modified Wed Aug 30 07:52:35 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
Tidy up the codes to include inheritance of common features for reusability. Also added options to change opacity, scale factor, color mode and contour values.


Revision 827 - Directory Listing
Modified Wed Aug 30 00:08:02 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
Added:
contour.py and arrows.py



Revision 826 - Directory Listing
Modified Tue Aug 29 09:12:33 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
ken and I did not have a good afternoon. our checkin was very buggy. fixed

Revision 825 - Directory Listing
Modified Tue Aug 29 06:59:27 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
and more on Drucker Prager

Revision 824 - Directory Listing
Modified Tue Aug 29 05:22:50 2006 UTC (11 years, 3 months ago) by ksteube
Original Path: trunk
C_GeneralTensorProduct was modifying the function space of the
first arg.  Now creating a shallow copy and using the copy to
avoid this.


Revision 823 - Directory Listing
Modified Tue Aug 29 02:05:59 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
geometry.py is back to the way it was.

Revision 822 - Directory Listing
Modified Tue Aug 29 01:39:27 2006 UTC (11 years, 3 months ago) by jongui
Original Path: trunk
Added:
trunk/pyvisi/py_src/driver.py

Modified:
trunk/pyvisi/py_src/datacollector.py
trunk/pyvisi/py_src/map.py
trunk/pyvisi/py_src/scene.py



Revision 821 - Directory Listing
Modified Mon Aug 28 08:36:30 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
and some more work on drucker-prager

Revision 820 - Directory Listing
Modified Mon Aug 28 06:55:36 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
make the modelframe test run

Revision 819 - Directory Listing
Modified Sun Aug 27 23:07:51 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
new version of FinleyReader etc. They can noe update node coordinates but have to be part of the Simulation

Revision 818 - Directory Listing
Modified Sun Aug 27 11:10:34 2006 UTC (11 years, 3 months ago) by dhawcroft
Original Path: trunk
saveVTK fixes



Revision 817 - Directory Listing
Modified Sat Aug 26 03:08:52 2006 UTC (11 years, 3 months ago) by ksteube
Original Path: trunk
Can now compile and run with MPI on shake71



Revision 816 - Directory Listing
Modified Thu Aug 24 00:03:01 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
drucker prager in modellib (it does not work yet)

Revision 815 - Directory Listing
Modified Wed Aug 23 09:31:50 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
ops! wrong file has been sent

Revision 814 - Directory Listing
Modified Wed Aug 23 09:31:10 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk
small bug in general tensor propduct fixed

Revision 813 - Directory Listing
Modified Mon Aug 21 02:08:47 2006 UTC (11 years, 3 months ago) by ksteube
Original Path: trunk
Tensor products for Data objects are now computed by a C++ method
C_GeneralTensorProduct, which calls C function matrix_matrix_product
to do the actual calculation.

Can perform product with either input transposed in place, meaning
without first computing the transpose in a separate step.


Revision 812 - Directory Listing
Modified Thu Aug 17 05:49:59 2006 UTC (11 years, 4 months ago) by dhawcroft
Original Path: trunk


Revision 811 - Directory Listing
Modified Mon Aug 14 05:36:17 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
generator for test data

Revision 810 - Directory Listing
Modified Mon Aug 14 04:49:14 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
some more test data

Revision 809 - Directory Listing
Modified Sun Aug 13 22:10:03 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
update of user guide'


Revision 808 - Directory Listing
Modified Fri Aug 11 01:25:16 2006 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk
Can now build escript and use doxygen on shake71



Revision 807 - Directory Listing
Modified Thu Aug 10 22:12:23 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
new target for users guide

Revision 806 - Directory Listing
Modified Thu Aug 10 11:58:52 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
Interface to the direct solver library UMLPACK is no implemented.



Revision 805 - Directory Listing
Modified Thu Aug 10 06:09:02 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
first steps toward UMFPACK

Revision 804 - Directory Listing
Modified Thu Aug 10 01:12:16 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
the new function swap_axes + tests added. (It replaces swap).



Revision 803 - Directory Listing
Modified Wed Aug 9 23:18:05 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
type fixed. compiles now

Revision 802 - Directory Listing
Modified Wed Aug 9 09:21:00 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
some stuff for john

Revision 801 - Directory Listing
Modified Wed Aug 9 00:49:56 2006 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk
Removed outdated tests that use trace()



Revision 800 - Directory Listing
Modified Tue Aug 8 11:23:18 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
new function _swap. Python wrapper + testing is still missing.



Revision 799 - Directory Listing
Modified Mon Aug 7 23:30:53 2006 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk
Moved a #pragma to modify the appropriate line


Revision 798 - Directory Listing
Modified Fri Aug 4 01:05:36 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
Reimplementation of the assemblage with persistent jacobeans.
There are also a few changes to the tests which has now
dramatically reduced the memory demand.



Revision 797 - Directory Listing
Modified Thu Aug 3 02:03:18 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
function added to manually free unused memory in the memory manager

Revision 796 - Directory Listing
Modified Mon Jul 31 06:16:17 2006 UTC (11 years, 4 months ago) by dhawcroft
Original Path: trunk
much faster parallel saveVTK
needs testers, don't be shy


Revision 795 - Directory Listing
Modified Mon Jul 31 01:23:58 2006 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk
Fixed typo in method name


Revision 794 - Directory Listing
Modified Sun Jul 30 03:45:01 2006 UTC (11 years, 4 months ago) by dhawcroft
Original Path: trunk


Revision 793 - Directory Listing
Modified Sat Jul 29 19:40:22 2006 UTC (11 years, 4 months ago) by dhawcroft
Original Path: trunk
Preliminary MPI version of saveVTK. Needs testers. Works for point data and should work for cell centered data.

Revision 792 - Directory Listing
Modified Fri Jul 28 10:37:16 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
frame for pyvisi set up

Revision 791 - Directory Listing
Modified Thu Jul 27 00:37:57 2006 UTC (11 years, 4 months ago) by bcumming
Original Path: trunk
updated calls to matrixmult to the new version matrix_mult


Revision 790 - Directory Listing
Modified Wed Jul 26 23:12:34 2006 UTC (11 years, 4 months ago) by bcumming
Original Path: trunk
changes to escript/py_src/pdetools.py and /escript/src/Data.h/.cpp to
make the Locator work in MPI. escript::Data::mindp now returns a 3 tuple,
with the MPI rank of the process on which the minimum value occurs
included. escript::Data::convertToNumArrayFromDPNo also takes the ProcNo
to perform the MPI reduction.

This had to be implemented in both the MPI and non-MPI versions to allow
the necesary changes to the Python code in pdetools.py. In the non-MPI
version ProcNo is set to 0. This works for the explicit scripts tested
thus far, however if it causes problems in your scripts contact Ben or
Lutz, or revert the three files (pdetools.py, Data.h and Data.cpp) to
the previous version.  



Revision 789 - Directory Listing
Modified Wed Jul 26 05:41:11 2006 UTC (11 years, 4 months ago) by dhawcroft
Original Path: trunk
Inserted PASO_MPI macro in Data.h to match source file

Revision 788 - Directory Listing
Modified Wed Jul 26 05:12:15 2006 UTC (11 years, 4 months ago) by bcumming
Original Path: trunk
small corrections to code in previous commit, and some header files that
should have been included in the last commit.



Revision 787 - Directory Listing
Modified Wed Jul 26 01:46:45 2006 UTC (11 years, 4 months ago) by bcumming
Original Path: trunk
MPI update
Each element (normal elements, faceElements, ContactElements and points)
are now assigned a unique global id to streamline per-element
calculations and file IO of element data.




Revision 786 - Directory Listing
Modified Tue Jul 25 04:58:05 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
switched off pyvisi

Revision 785 - Directory Listing
Modified Tue Jul 25 03:48:10 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk
some new functions around tensor product added.

Revision 784 - Directory Listing
Modified Wed Jul 19 05:38:14 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk
removed personal testing code from SConscript



Revision 783 - Directory Listing
Modified Tue Jul 18 01:32:50 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
coordinates, element size and normals returned by corresponding
FunctionSpace mesthods are now protected against updates. So 
+=, -=, *=, /=, setTaggedValue, fillFromNumArray will through an
excpetion.

The FunctionSpace class does nut buffer the oordinates, element size and
normals yet.



Revision 782 - Directory Listing
Modified Tue Jul 18 00:47:47 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk
Large number of changes to Finley for meshing in MPI.

- optimisation and neatening up of rectcanglular mesh generation code
- first and second order 1D, 2D and 3D rectangular meshes are now
  available in finley and escript using MPI.
- reduced meshes now generated in MPI, and interpolation to and from 
  reduced data types now supported.  


Revision 781 - Directory Listing
Modified Fri Jul 14 08:47:38 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
grad functions linked into the persistent jacobean scheme

Revision 780 - Directory Listing
Modified Fri Jul 14 07:46:07 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk
+ Removed nelix_kb_options.py since I no longer have that notebook and as a result it isn't a maintained example of a win32 configuration. coleto_kb_options.py is my new notebooks configuration. Note that this particular set of compilation options target the Core Duo processor (and family relations) and as such won't work on other x86 platforms that don't have the same feature set. See the Intel compiler guide for details on how to target other processors.

Revision 779 - Directory Listing
Modified Fri Jul 14 07:41:31 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk
+ Updated compilation options for Cognac to squeeze out a bit more performance
+ Now compiles using the Intel Math headers (mathimf.h) rather than plain math.h on both Win32 and Linux platforms when using the Intel compiler. Gives a small boost to performance on Altix and is essential on Windows



Revision 778 - Directory Listing
Modified Thu Jul 13 02:27:45 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
add a switch to stop calls of external solver libraries

Revision 777 - Directory Listing
Modified Wed Jul 12 08:54:45 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
integration with persistent jacobeans is running now

Revision 776 - Directory Listing
Modified Wed Jul 12 00:07:31 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
basic code for persistence of jacobeans added. routines are not called yet

Revision 775 - Directory Listing
Modified Mon Jul 10 04:00:08 2006 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk
Modified the following python methods in escript/py_src/util.py to
call faster C++ methods:
	escript_trace
	escript_transpose
	escript_symmetric
	escript_nonsymmetric


Revision 774 - Directory Listing
Modified Mon Jul 10 02:00:55 2006 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk
Modified nightly testing:
	Tests run as batch job via cron
	You can choose to run run_tests or all_tests via command-line argument
	They use 2 CPUs for run_tests and 4 CPUs for all_tests
	Log files from tests are saved in /raid3/ksteube/AutoTests/Logs


Revision 773 - Directory Listing
Modified Fri Jul 7 10:10:00 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
assemblage tests added

Revision 772 - Directory Listing
Modified Fri Jul 7 05:47:28 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
the check for inhomogenous constraint has been modified so ot does nor
require a tolerance which is a bit risky.


Revision 771 - Directory Listing
Modified Tue Jul 4 05:39:42 2006 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk
deleted test files



Revision 770 - Directory Listing
Modified Tue Jul 4 05:37:36 2006 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk
Ken's initial import

Revision 769 - Directory Listing
Modified Sun Jul 2 23:58:22 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
A bit more tests are generated now. Ther is still a problem with the slection of the solution order.



Revision 768 - Directory Listing
Modified Fri Jun 30 09:26:16 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
and the generation of tests for contact elements works now.

Revision 767 - Directory Listing
Modified Fri Jun 30 07:29:08 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
new FunctionSpace method setTags added

Revision 766 - Directory Listing
Modified Fri Jun 30 06:44:14 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
modified version of a test generator (private use)

Revision 765 - Directory Listing
Modified Fri Jun 30 06:37:11 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
The test for the contact normal has been modified to take in cosideration the fact that the normal is unique up to the factor +/-1. 
Now the test checks the kllength of the normal for 1 and the angle to the reference normal.



Revision 764 - Directory Listing
Modified Fri Jun 30 06:33:37 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
The statement '#ifdef MACRO1 && MACRO2' is not supported by the
gnu processor. This has been modified.



Revision 763 - Directory Listing
Modified Fri Jun 30 05:52:31 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk
some modification in the element reordering which should solve some problems 
caused by the fact that qsort may handels == items differently on different platform.



Revision 762 - Directory Listing
Modified Fri Jun 30 00:09:19 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk
- small change to SConstruct to remove my testing code


Revision 761 - Directory Listing
Modified Fri Jun 30 00:07:21 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk
- removed the need to uncomment #define PASO_MPI when building MPI
  version, now passed as an argument to the compiler.


Revision 760 - Directory Listing
Modified Thu Jun 29 05:36:08 2006 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk
Added a timer so we can see how long each test takes to run.



Revision 759 - Directory Listing
Modified Thu Jun 29 01:53:23 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk
- added directory pythonMPI to the source tree. this directory contains
  the c++ wrapper that is used to run python scripts in parallel for the
  MPI version of escript/finley
- updated the SConstruct and ./scons/ess_options.py for conditional MPI
  compilation. To compile the MPI version on ESS uncomment the #define
  PASO_MPI in ./paso/src/Paso.h and add the command line option
  useMPI=yes when running scons.
- fixed a compile time error in the MPI build in  
  finley/src/CPPAdapter/MeshAdapterFactory.cpp 
     


Revision 758 - Directory Listing
Modified Mon Jun 26 13:52:42 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk
+ Added PASO_MPI conditional compilation guard to prevent inclusion of mpi.h when not using mpi.
Trunk now compiles and runs on both win32 and linux.

Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk
+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)


Revision 751 - Directory Listing
Modified Mon Jun 26 01:46:34 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk
Changes relating to the MPI version of escript
The standard OpenMP version of escript is unchanged

- updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes
  over multiple MPI processes.
- added CommBuffer code in Paso for communication of Data associated
  with distributed meshes
- updates in Finley and Escript to support distributed data and operations
  on distributed data (such as interpolation).
- construction of RHS in MPI, so that simple explicit schemes (such as
  /docs/examples/wave.py without IO and the Locator) can run in MPI.
- updated mesh generation for first order line, rectangle and brick
  meshes and second order line meshes in MPI.        
- small changes to trunk/SConstruct and trunk/scons/ess_options.py to
  build the MPI version, these changes are turned off by default.


Revision 741 - Directory Listing
Modified Thu Jun 22 03:36:04 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk
+ Added {inc,py,lib}install paths so that when escript builds on ac it installs the build into /home/escript/escript-<put a revision number here>. That way you can just copy this directory into /opt of wherever for someone to install into ac.


Revision 740 - Directory Listing
Modified Thu Jun 22 03:23:05 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk
+ Options to build on APAC NF ac machine modified to use /home/escript build area. escript builds using its own version of boost and python2.4.3 (and scons for that matter) in this directory rather than using the APAC NF installations. This eases APAC's module management where different groups want slightly different configurations for various modules.


Revision 739 - Directory Listing
Modified Tue Jun 20 00:52:56 2006 UTC (11 years, 5 months ago) by ksteube
Original Path: trunk
Major rewrite:  now submits a PBS job to run tests on one CPU.  Log
files from run are saved in /raid3/ksteube/AutoTests.  Runs short
version run_tests or long version all_tests based on value of
command-line argument.



Revision 738 - Directory Listing
Modified Sat Jun 17 06:00:19 2006 UTC (11 years, 6 months ago) by matt
Original Path: trunk
ess_options.py is updated and synchronised with the esys/env module. In turn, this module is used to build and setup the user environments of esys/current and esys/current-debug.


Revision 737 - Directory Listing
Modified Wed Jun 14 04:00:41 2006 UTC (11 years, 6 months ago) by ksteube
Original Path: trunk
Added a caution to be sure to set OMP_NUM_THREADS,
if unset you will get too many threads.

Also fixed a few spelling mistakes.



Revision 736 - Directory Listing
Modified Wed Jun 14 03:49:58 2006 UTC (11 years, 6 months ago) by ksteube
Original Path: trunk
Fixed a couple spelling errors



Revision 735 - Directory Listing
Modified Wed Jun 14 02:09:21 2006 UTC (11 years, 6 months ago) by ksteube
Original Path: trunk
Removed -ansi_alias compiler option to icpc. It was causing the compiler
to optimize away the default constructor DataAbstract::DataAbstract and
breaking the tests.



Revision 734 - Directory Listing
Modified Tue Jun 13 03:55:25 2006 UTC (11 years, 6 months ago) by ksteube
Original Path: trunk
Removed test file



Revision 733 - Directory Listing
Modified Tue Jun 13 03:55:10 2006 UTC (11 years, 6 months ago) by ksteube
Original Path: trunk
Test file



Revision 732 - Directory Listing
Modified Fri Jun 9 05:26:48 2006 UTC (11 years, 6 months ago) by woo409
Original Path: trunk
+ First cut at build environment for Finley on the APAC National Facility (AC) machine



Revision 731 - Directory Listing
Modified Mon May 15 04:09:52 2006 UTC (11 years, 7 months ago) by bcumming
Original Path: trunk


Revision 730 - Directory Listing
Modified Mon May 15 04:03:49 2006 UTC (11 years, 7 months ago) by bcumming
Original Path: trunk


Revision 729 - Directory Listing
Modified Mon May 15 03:16:53 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk
cut down the number of time steps

Revision 728 - Directory Listing
Modified Mon May 15 02:01:18 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk
modelframe test examples work now

Revision 727 - Directory Listing
Modified Fri May 12 06:31:06 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk
In case of an error in paso a seg fault occured. this was caused by
inproper deallocation of memory in this case. this problem is fixed now.



Revision 723 - Directory Listing
Modified Wed May 3 10:29:16 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk
some installation notes added to users guide

Revision 722 - Directory Listing
Modified Mon May 1 11:49:18 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk
abstract added in users guide added

Revision 721 - Directory Listing
Modified Sat Apr 29 06:59:59 2006 UTC (11 years, 7 months ago) by elspeth
Original Path: trunk
Changing the autobuild script to try and make it work.


Revision 720 - Directory Listing
Modified Thu Apr 27 10:16:05 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk
formatting errors in epydoc tags fixed

Revision 719 - Directory Listing
Modified Thu Apr 27 08:38:07 2006 UTC (11 years, 7 months ago) by elspeth
Original Path: trunk
Added example files to upload


Revision 718 - Directory Listing
Modified Thu Apr 27 08:28:08 2006 UTC (11 years, 7 months ago) by elspeth
Original Path: trunk
Minor correction to buildlogs 


Revision 717 - Directory Listing
Modified Thu Apr 27 08:07:11 2006 UTC (11 years, 7 months ago) by elspeth
Original Path: trunk
Now does userguide in html and pdf upload to webserver.


Revision 716 - Directory Listing
Modified Thu Apr 27 07:55:27 2006 UTC (11 years, 7 months ago) by elspeth
Original Path: trunk
Added a script for uploading docs to the release dir on the webserver.


Revision 715 - Directory Listing
Modified Thu Apr 27 07:17:40 2006 UTC (11 years, 7 months ago) by elspeth
Original Path: trunk
Adding a release tools directory, and a script that builds the source and test release files, copies them to a sandbox area, untars them, and checks if scons and scons all_tests work.


Revision 714 - Directory Listing
Modified Thu Apr 27 05:42:33 2006 UTC (11 years, 7 months ago) by elspeth
Original Path: trunk
Fixed python test

Revision 713 - Directory Listing
Modified Thu Apr 27 05:03:44 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk
relative error tests have been introduced into a few more of the unit test.

Revision 712 - Directory Listing
Modified Thu Apr 27 02:08:50 2006 UTC (11 years, 7 months ago) by elspeth
Original Path: trunk
Fixed build of epydoc documentation. Now builds html in relase/doc/epydoc .


Revision 711 - Directory Listing
Modified Wed Apr 26 22:39:51 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk
tests pass now on gcc: some tests did not take round-off errors into consideration

Revision 710 - Directory Listing
Modified Wed Apr 26 22:22:16 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk
"scons dodebug=no all_tests" runs now. 

Some of the tests could only pass under dodebug=yes as they checked for
exceptions from asserts. The tests are switched off now if DOASSERT is
not set.



Revision 709 - Directory Listing
Modified Wed Apr 26 06:35:36 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk
fixes to get scons py_tests going: mainly fixes in the pathes

Revision 708 - Directory Listing
Modified Mon Apr 24 03:40:49 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk
missing file added

Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
latex build documentation is working now

Revision 706 - Directory Listing
Modified Sat Apr 8 16:13:02 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
python tests compile and run but there is still a problem with dependencies'


Revision 705 - Directory Listing
Modified Fri Apr 7 17:57:37 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
python tests are allmost working

Revision 704 - Directory Listing
Modified Thu Apr 6 02:27:37 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
some missing files (but they will be removed later)

Revision 703 - Directory Listing
Modified Thu Apr 6 02:20:47 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
some missing files

Revision 702 - Directory Listing
Modified Thu Apr 6 01:11:01 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
not needed anymore

Revision 700 - Directory Listing
Modified Thu Apr 6 00:13:40 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
A few changes in the build mechanism and the file structure so scons can build release tar files:

  * paso/src/Solver has been moved to paso/src 
  * all test_.py are now run_.py files and are assumed to be passing python tests. they can run by 
    scons py_tests and are part of the release test set
  * escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory 
    (rather then the PYTHONPATH).
  * all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i
    by not run automatically.
  * CppUnitTest is now treated as a escript module (against previous decisions).
  * scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files)

the python tests don't pass yet due to path problems.



Revision 699 - Directory Listing
Modified Fri Mar 31 06:27:56 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
now float**Data is running

Revision 698 - Directory Listing
Modified Fri Mar 31 04:52:55 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
test with tagged data pass now

Revision 697 - Directory Listing
Modified Fri Mar 31 04:48:56 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
bug with tagged data fixed

Revision 696 - Directory Listing
Modified Thu Mar 30 12:45:13 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
pyvisi builds now

Revision 695 - Directory Listing
Modified Thu Mar 30 12:44:11 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
obsolet tests removed

Revision 694 - Directory Listing
Modified Thu Mar 30 11:35:55 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
pyvisi builds now. tests still to be fixed.

Revision 693 - Directory Listing
Modified Thu Mar 30 08:34:08 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
DataVariable removed. it is not used.

Revision 692 - Directory Listing
Modified Thu Mar 30 08:05:02 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
test with tagged data still fail and switched off

Revision 691 - Directory Listing
Modified Wed Mar 29 03:43:36 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk
+ Fixed incorrect target path in SConstruct file
+ cognac now links with g++ compiled boost rather than intelc compiled boost due to compilation errors with intel c. (Finley will still compile and work with intel c though) - this is the same configuration as the access altix


Revision 690 - Directory Listing
Modified Tue Mar 28 07:18:51 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk
+ Added basic_py_tests target which will run the basic set of python tests. The list of python tests was taken from autoscons


Revision 689 - Directory Listing
Modified Tue Mar 28 07:16:54 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk
+ cognac now uses installed boost libraries rather than the ones in woo409's home directory


Revision 688 - Directory Listing
Modified Tue Mar 28 01:56:24 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk
+ Modified the env (environment) creation for the ia64 platform to include PATH so it no longer complains about not being able to locate the intel compiler. This is related to the previous fix for windows. Seems it is a scons intelc.py bug.


Revision 687 - Directory Listing
Modified Mon Mar 27 22:17:32 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
small fixes

Revision 686 - Directory Listing
Modified Mon Mar 27 22:17:16 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
small fixes

Revision 685 - Directory Listing
Modified Mon Mar 27 22:16:33 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
compilation uses python version scons is running under now

Revision 684 - Directory Listing
Modified Mon Mar 27 07:34:07 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk
+ Minor modification to how the ENV external environment is initialised. Originally this was done as part of the env = Environment( ENV = ...) construction. Unfortunately this doesn't work properly on windows as it clobbers the path edits performed by the tools = 'intelc'. The end result is icl is not found. Now the env is initialised without the ENV = and they are added in after construction.
I suspect this is a bug in scons itself on the windows platform.

Revision 683 - Directory Listing
Modified Mon Mar 27 05:46:50 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk
+ autotest-scons now uses the new build system and launches tests via
scons so it gets the correct environment.


Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk
+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3



Revision 681 - Directory Listing
Modified Mon Mar 27 02:17:47 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk
remove lib directory to prevent conflict in merge with ROBW_XPLATFORM

Revision 679 - Directory Listing
Modified Mon Mar 27 01:02:05 2006 UTC (11 years, 8 months ago) by jgs
Original Path: trunk
add woodcock and hornby to result mailing list


Revision 660 - Directory Listing
Modified Fri Mar 24 08:43:21 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
that does not look to bad now although more stuff could be added.

Revision 657 - Directory Listing
Modified Fri Mar 24 08:28:15 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
some typos fixed

Revision 653 - Directory Listing
Modified Fri Mar 24 07:34:34 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
linearPDE docu fixed

Revision 645 - Directory Listing
Modified Fri Mar 24 01:10:42 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
More copyright.


Revision 644 - Directory Listing
Modified Fri Mar 24 01:05:42 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
More copyright.


Revision 643 - Directory Listing
Modified Fri Mar 24 00:28:41 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
More copyright info added.


Revision 637 - Directory Listing
Modified Thu Mar 23 10:55:31 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
more copyright statements added

Revision 633 - Directory Listing
Modified Thu Mar 23 05:37:00 2006 UTC (11 years, 8 months ago) by dhawcroft
Original Path: trunk


Revision 631 - Directory Listing
Modified Thu Mar 23 04:27:32 2006 UTC (11 years, 8 months ago) by dhawcroft
Original Path: trunk
Prepended all paso source files with new Copyright notice

Revision 629 - Directory Listing
Modified Thu Mar 23 02:41:25 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
Copyright information added.


Revision 628 - Directory Listing
Modified Thu Mar 23 02:27:57 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
Copyright information added.


Revision 627 - Directory Listing
Modified Thu Mar 23 02:22:46 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
Copyright information added.


Revision 626 - Directory Listing
Modified Thu Mar 23 02:16:36 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
Copyright information inserted


Revision 625 - Directory Listing
Modified Thu Mar 23 00:41:25 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
some updates and linearPDE.tex switched off

Revision 621 - Directory Listing
Modified Wed Mar 22 07:44:18 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
bugs in test fixed

Revision 620 - Directory Listing
Modified Wed Mar 22 07:43:42 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
problem with tagged data isolated

Revision 619 - Directory Listing
Modified Wed Mar 22 04:49:24 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
non letter and non digital in hostname ar ereplaced by _ now

Revision 618 - Directory Listing
Modified Wed Mar 22 04:02:38 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
mmio moced to paso

Revision 617 - Directory Listing
Modified Wed Mar 22 02:58:17 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
More copyright.


Revision 616 - Directory Listing
Modified Wed Mar 22 02:46:56 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
Copyright added to more source files.


Revision 615 - Directory Listing
Modified Wed Mar 22 02:12:00 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
More copyright information.


Revision 614 - Directory Listing
Modified Wed Mar 22 01:37:07 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
Corrected spelling of 'license' in url so that the link actually points to the license.


Revision 613 - Directory Listing
Modified Wed Mar 22 01:12:32 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
More copyright information inserted.


Revision 612 - Directory Listing
Modified Tue Mar 21 23:54:39 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
strange problem with import numarray.linear_algebra fixed

Revision 611 - Directory Listing
Modified Tue Mar 21 23:22:37 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
typo fixed

Revision 610 - Directory Listing
Modified Tue Mar 21 23:08:28 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
some missing files

Revision 609 - Directory Listing
Modified Tue Mar 21 09:46:39 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
Updated copyright and licence notices.


Revision 608 - Directory Listing
Modified Tue Mar 21 09:46:06 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk
moved "import numarray.linear_algebra" to function that uses it, in case it is not installed


Revision 606 - Directory Listing
Modified Mon Mar 20 23:34:00 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
documentation on pyvisi added

Revision 605 - Directory Listing
Modified Mon Mar 20 07:16:27 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
pyvisi with vtk runs noe on the altix

Revision 604 - Directory Listing
Modified Mon Mar 20 02:23:14 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
example cleanup

Revision 603 - Directory Listing
Modified Mon Mar 20 01:49:39 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk
pyvisi compiles now

Revision 602 - Directory Listing
Modified Fri Mar 17 06:57:46 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
more work on pyvisi integration

Revision 601 - Directory Listing
Modified Fri Mar 17 06:18:25 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
directories are moved around to match escript convention

Revision 600 - Directory Listing
Modified Fri Mar 17 05:53:59 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
some renaming

Revision 599 - Directory Listing
Modified Fri Mar 17 05:48:59 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
update on escript function

Revision 598 - Directory Listing
Modified Fri Mar 17 05:00:24 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
edable versions

Revision 597 - Directory Listing
Modified Fri Mar 17 04:42:57 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk


Revision 596 - Directory Listing
Modified Wed Mar 15 22:41:23 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
some work on AdvectivePDE for the scalar case

Revision 595 - Directory Listing
Modified Tue Mar 14 23:52:45 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
test_utilOnFinley fixed (did run the tests that still fail)

Revision 594 - Directory Listing
Modified Tue Mar 14 23:36:08 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
print message removed

Revision 593 - Directory Listing
Modified Tue Mar 14 02:50:27 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
updates on escript documentation (unfinished)

Revision 592 - Directory Listing
Modified Mon Mar 13 04:04:26 2006 UTC (11 years, 9 months ago) by lkettle
Original Path: trunk
Adding some figure for online documentation (3D Wave Propagation).


Revision 591 - Directory Listing
Modified Mon Mar 13 02:05:54 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
papi switched off on altix

Revision 590 - Directory Listing
Modified Fri Mar 10 06:29:14 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
all tests activated

Revision 589 - Directory Listing
Modified Fri Mar 10 06:28:35 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
my little test generator

Revision 588 - Directory Listing
Modified Fri Mar 10 04:45:04 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
1D and 3D tests for eigenvalues_and_eigenvector added.

Revision 587 - Directory Listing
Modified Fri Mar 10 02:26:50 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
eigenvalues_and_eigenvector fucntion added. test for 2D problem is added and is passed.

Revision 586 - Directory Listing
Modified Fri Mar 10 01:24:27 2006 UTC (11 years, 9 months ago) by lkettle
Original Path: trunk
corrected error in natural b.c.


Revision 585 - Directory Listing
Modified Thu Mar 9 23:47:42 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
problem with eigenvalue of zero matrix fixed (thanks Dr Hale)

Revision 584 - Directory Listing
Modified Thu Mar 9 23:03:38 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
eigenvalues: compiles and passes tests on altix now

Revision 583 - Directory Listing
Modified Wed Mar 8 08:15:34 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
_eigenvalues_and_eigenvector method added of data object. the algorithm has been tested on floats in python but not on data objects.

Revision 582 - Directory Listing
Modified Wed Mar 8 05:54:06 2006 UTC (11 years, 9 months ago) by lkettle
Original Path: trunk
Changed example script for wave.py to a point source wave propagation problem in 3D.


Revision 581 - Directory Listing
Modified Wed Mar 8 05:48:51 2006 UTC (11 years, 9 months ago) by lkettle
Original Path: trunk
changes to section 2.3 on 3D wave propagation in online reference guide and added some figures


Revision 580 - Directory Listing
Modified Wed Mar 8 05:45:51 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
faster version of the local eigenvalue calculation

Revision 579 - Directory Listing
Modified Tue Mar 7 01:28:23 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
new section on lame equation completed

Revision 578 - Directory Listing
Modified Mon Mar 6 06:12:04 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
new section in the tutorial

Revision 577 - Directory Listing
Modified Fri Mar 3 08:32:16 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
installation of new inc file

Revision 576 - Directory Listing
Modified Fri Mar 3 08:28:42 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
some steps towards eigenvalue and eigenvector calculation

Revision 575 - Directory Listing
Modified Fri Mar 3 03:33:07 2006 UTC (11 years, 9 months ago) by lkettle
Original Path: trunk
I have changed some of the documentation and added more explanations for
the online reference guide for esys13. I have modified two of the
example source codes to write out the results for Helmholtz problem and
changed one variable name in the diffusion.py code to avoid confusion.


Revision 574 - Directory Listing
Modified Thu Mar 2 06:31:24 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
some modifications on eigenvalues to make it a bit more robust.

Revision 573 - Directory Listing
Modified Thu Mar 2 00:42:53 2006 UTC (11 years, 9 months ago) by lkettle
Original Path: trunk
I have made a few changes to the documentation for the online reference
guide for the Poisson and diffusion examples.


Revision 572 - Directory Listing
Modified Wed Mar 1 04:40:10 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
some fixes to get Latex compiled

Revision 571 - Directory Listing
Modified Tue Feb 28 06:53:17 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
modify whereZero etc methods to also accept a tolerance parameter

Revision 570 - Directory Listing
Modified Tue Feb 28 06:51:25 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
extend these tests to test DataTagged objecrs also

Revision 569 - Directory Listing
Modified Tue Feb 28 05:34:37 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
modified presentation of LinearPDE

Revision 568 - Directory Listing
Modified Tue Feb 28 03:59:06 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
update

Revision 567 - Directory Listing
Modified Tue Feb 28 03:58:05 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
updates examples

Revision 566 - Directory Listing
Modified Tue Feb 28 03:52:29 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
rename

Revision 565 - Directory Listing
Modified Mon Feb 27 00:04:17 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
some updates

Revision 564 - Directory Listing
Modified Thu Feb 23 05:22:31 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
extend testing to include DataTagged objects with no
tags, only default values


Revision 563 - Directory Listing
Modified Thu Feb 23 05:09:47 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
extend operator tests to include DataTagged and DataExpanded


Revision 562 - Directory Listing
Modified Thu Feb 23 05:03:16 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
further fix for DataTAgged::dp_algorithm, was not working for DataTagged objects with 0 tags

Revision 561 - Directory Listing
Modified Thu Feb 23 03:49:50 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
minor reformatting


Revision 560 - Directory Listing
Modified Thu Feb 23 01:58:35 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
reinstate testing of DataTagged object unary ops


Revision 559 - Directory Listing
Modified Thu Feb 23 01:43:44 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
reimplement dp_algorithm for DataTagged, existing
implementation was complete rubbish
(ich bin so beschämt!)


Revision 558 - Directory Listing
Modified Thu Feb 23 01:02:31 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
switch back to test on no tagged data

Revision 557 - Directory Listing
Modified Wed Feb 22 05:11:56 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
add test case for case where binaryOp combines a DataTagged and a scalar

Revision 556 - Directory Listing
Modified Wed Feb 22 04:45:15 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
reinstate testing using DataTagged objects


Revision 555 - Directory Listing
Modified Wed Feb 22 04:44:10 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
fixed binaryOp for combination of DataTagged and scalar values.
calculation of default value where RHS was a scalar was not yet
implemented


Revision 554 - Directory Listing
Modified Wed Feb 22 04:02:54 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
tests for tagged data fixed. test failing on maxval with segmenation fault (peinlich, peinlich)

Revision 553 - Directory Listing
Modified Wed Feb 22 04:01:21 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
tests for tagged data

Revision 552 - Directory Listing
Modified Wed Feb 22 03:18:07 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
and more work on saving the element jacobians (please don;t look at the code)

Revision 551 - Directory Listing
Modified Wed Feb 22 02:59:25 2006 UTC (11 years, 9 months ago) by robwdcock
Original Path: trunk
Scons build options for cognac.ivec.org using intel v9.0.026 compilers
Note: Boost is currently not available as a module on cognac. As a result the boost directories used in this build point to my specific boost installation which should be visible to all ivec users. This will get fixed eventually. 


Revision 550 - Directory Listing
Modified Wed Feb 22 02:14:38 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
more tests on slicing

Revision 549 - Directory Listing
Modified Wed Feb 22 00:45:48 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
extend testing of DataTagged setSlice to include case where
source and target have mismatched tag sets


Revision 548 - Directory Listing
Modified Tue Feb 21 23:52:41 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
modify tests for binary operations and setSlice to ensure situations where two DataTaggeds with mismatched tag sets are tested correctly

Revision 547 - Directory Listing
Modified Tue Feb 21 06:10:54 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk
solution and reduced solution can have reference numbers now!

Revision 546 - Directory Listing
Modified Tue Feb 21 01:59:07 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
reinstate testing of DataTagged objects


Revision 545 - Directory Listing
Modified Tue Feb 21 01:24:05 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
reinstate testing using DataTagged values


Revision 544 - Directory Listing
Modified Tue Feb 21 01:23:23 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
minor comment fixes


Revision 543 - Directory Listing
Modified Tue Feb 21 01:18:38 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
fix BinaryOp for DataTagged values - existing implementation was adding
tags from RHS to LHS using RHS's default value - should have been using
LHS's default value! fixed now


Revision 542 - Directory Listing
Modified Mon Feb 20 06:53:12 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
reinstate sliceSetting testing of DataTagged


Revision 541 - Directory Listing
Modified Mon Feb 20 06:50:39 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
ensure src and dest objects have matching tag sets in setSlice
by adding tags present in src but not in dest to dest using
dest's default value before doing actual slicing


Revision 540 - Directory Listing
Modified Mon Feb 20 06:05:32 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
reinstate sliceGetting testing for DataTagged objects


Revision 539 - Directory Listing
Modified Mon Feb 20 04:12:51 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
add a test case for tag() method


Revision 538 - Directory Listing
Modified Mon Feb 20 03:43:25 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
minor formatting changes


Revision 537 - Directory Listing
Modified Mon Feb 20 02:00:18 2006 UTC (11 years, 9 months ago) by jgs
Original Path: trunk
refine/extend tests for slicing, particularly those for DataTagged


Revision 536 - Directory Listing
Modified Fri Feb 17 03:20:53 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
symmetric and nonsymmetric part functions added

Revision 535 - Directory Listing
Modified Fri Feb 17 02:27:06 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
minor comment changes


Revision 534 - Directory Listing
Modified Fri Feb 17 01:03:53 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
finish testing of DataTagged::setSlice


Revision 533 - Directory Listing
Modified Thu Feb 16 06:49:59 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
testing setSlice with rank1 and rank 3 values and multiple tags


Revision 532 - Directory Listing
Modified Wed Feb 15 09:45:53 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
first steps towards the reuse of the element jacobians

Revision 531 - Directory Listing
Modified Wed Feb 15 08:11:10 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
a new version of lumping implemented (does not need a stiffness matrix)

Revision 530 - Directory Listing
Modified Wed Feb 15 07:11:00 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
eigenvalues is working now

Revision 529 - Directory Listing
Modified Wed Feb 15 03:58:50 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
small bugs in eigenvalues function fixed. 3x3 on data still given wrong results

Revision 528 - Directory Listing
Modified Wed Feb 15 02:20:33 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
local eigenvalues added (not tested yet)

Revision 527 - Directory Listing
Modified Wed Feb 15 01:25:57 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
extend setSlice testing to include DataTagged with default values


Revision 526 - Directory Listing
Modified Tue Feb 14 06:56:33 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
pdetools test added

Revision 525 - Directory Listing
Modified Tue Feb 14 06:56:13 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
rob's strange NoPDE class added

Revision 524 - Directory Listing
Modified Tue Feb 14 05:55:46 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
more testing of setSlice


Revision 523 - Directory Listing
Modified Tue Feb 14 05:54:41 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
symbol tests removed

Revision 522 - Directory Listing
Modified Tue Feb 14 05:53:52 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
now done by test_utilOnBruce.py

Revision 521 - Directory Listing
Modified Tue Feb 14 05:50:56 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
now done test_utilOnFinley.py

Revision 520 - Directory Listing
Modified Tue Feb 14 05:45:11 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
obsolet

Revision 519 - Directory Listing
Modified Tue Feb 14 05:30:50 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
fix comments for setSlice - were totally misleading!


Revision 518 - Directory Listing
Modified Tue Feb 14 05:18:09 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
add some basic testing for DataTagged::setSlice


Revision 517 - Directory Listing
Modified Tue Feb 14 02:25:02 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
tests for __getitem__ added

Revision 516 - Directory Listing
Modified Tue Feb 14 01:53:58 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
comprehensive testing of DataTagged::getSlice completed


Revision 515 - Directory Listing
Modified Mon Feb 13 05:59:51 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
split slicing testing into getSlice and setSlice tests
add testing for DataTagged objects with one tagged value


Revision 514 - Directory Listing
Modified Mon Feb 13 04:47:47 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
add testing of slicing methods


Revision 513 - Directory Listing
Modified Mon Feb 13 04:46:51 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
comment and formatting changes


Revision 512 - Directory Listing
Modified Fri Feb 10 07:04:14 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
bug in parallelization fixed

Revision 511 - Directory Listing
Modified Fri Feb 10 05:39:18 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
extend basic testing of Data objects containing DataTagged objects

Revision 510 - Directory Listing
Modified Fri Feb 10 04:00:50 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
add tests for getSampleData

Revision 509 - Directory Listing
Modified Fri Feb 10 03:24:44 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
minor comment changes


Revision 508 - Directory Listing
Modified Fri Feb 10 01:41:55 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
comprehensive testing of reshapeDataPoint method

Revision 507 - Directory Listing
Modified Thu Feb 9 06:13:07 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
minor comment changes


Revision 506 - Directory Listing
Modified Thu Feb 9 06:06:02 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
extend testing for binary and unary operations
and add comprehensive testing for method getSampleDataByTag


Revision 505 - Directory Listing
Modified Wed Feb 8 23:27:16 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
bandwidth optimizer but it does not really work.

Revision 504 - Directory Listing
Modified Wed Feb 8 05:51:27 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
initial testing of operations involving DataTagged objects


Revision 503 - Directory Listing
Modified Wed Feb 8 04:25:40 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
add test for copy constructors


Revision 502 - Directory Listing
Modified Wed Feb 8 03:57:20 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
add test for setTaggedValue


Revision 501 - Directory Listing
Modified Wed Feb 8 03:37:20 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
add extensive testing of addTaggedValue

Revision 500 - Directory Listing
Modified Tue Feb 7 05:19:07 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
fix a reference indicator


Revision 499 - Directory Listing
Modified Tue Feb 7 04:40:44 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
add comprehensive testing for DataTagged with (1) default value only, (2) one tag value and (3) three tag values

Revision 498 - Directory Listing
Modified Tue Feb 7 01:53:47 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
can now specify target "build_docs" in order to build
epydoc and doxygen documentation


Revision 497 - Directory Listing
Modified Tue Feb 7 01:28:01 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
extend testing of default DataTagged object


Revision 496 - Directory Listing
Modified Tue Feb 7 01:27:14 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
minor fix to DataTagged::getTagNumber
changes to comments and formatting
inline two methods


Revision 495 - Directory Listing
Modified Mon Feb 6 06:32:06 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
performance monitoring added. complies without PAPI.

Revision 494 - Directory Listing
Modified Fri Feb 3 07:35:49 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
draft for performance monitor tool in paso (well, not really)

Revision 493 - Directory Listing
Modified Fri Feb 3 02:18:45 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
transpose added (just for me)

Revision 492 - Directory Listing
Modified Fri Feb 3 02:07:24 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
transpose function added

Revision 491 - Directory Listing
Modified Thu Feb 2 08:21:10 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
small  bug fixed

Revision 490 - Directory Listing
Modified Thu Feb 2 07:07:21 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
tolerance in face detection added

Revision 489 - Directory Listing
Modified Thu Feb 2 06:27:15 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
fix message file paths

Revision 488 - Directory Listing
Modified Thu Feb 2 06:19:23 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
build rundoxygen/runepydoc scripts on the fly based on platform dependant locations of these utilities

Revision 487 - Directory Listing
Modified Thu Feb 2 06:16:30 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
define epydoc PYTHONPATH setting

Revision 486 - Directory Listing
Modified Thu Feb 2 05:23:44 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
define locations of doxygen/epydoc executables

Revision 485 - Directory Listing
Modified Thu Feb 2 04:21:02 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
change scons files to match new esys_options based format

Revision 484 - Directory Listing
Modified Thu Feb 2 02:12:08 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
add remainder of includes to SConscript includes install

Revision 483 - Directory Listing
Modified Thu Feb 2 02:10:15 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
change includes to use PasoUtil.h, and add remainder
of includes to SConscript include install


Revision 482 - Directory Listing
Modified Thu Feb 2 02:00:30 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
move Util -> PasoUtil to prevent clash with finley/Util


Revision 481 - Directory Listing
Modified Wed Feb 1 05:57:50 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
add mechanism to install .h files to inc directories
(still need to specify full lists of .h files to install)


Revision 480 - Directory Listing
Modified Wed Feb 1 05:15:12 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
rationalise #includes and forward declarations


Revision 479 - Directory Listing
Modified Wed Feb 1 04:36:53 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
a few more benchmarks added

Revision 478 - Directory Listing
Modified Tue Jan 31 02:21:49 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
rationalise #includes


Revision 477 - Directory Listing
Modified Mon Jan 30 07:20:20 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
rationalise #includes


Revision 476 - Directory Listing
Modified Mon Jan 30 06:33:08 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
fix #include


Revision 475 - Directory Listing
Modified Mon Jan 30 05:36:15 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
rationalise #includes


Revision 474 - Directory Listing
Modified Mon Jan 30 04:23:44 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
restructure escript source tree
move src/Data/* -> src
remove inc
modify #includes and cpppath settings accordingly


Revision 473 - Directory Listing
Modified Fri Jan 27 01:59:09 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
make adjustments to allow for new source tree structure


Revision 472 - Directory Listing
Modified Fri Jan 27 01:50:59 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
rationalise all #includes


Revision 471 - Directory Listing
Modified Fri Jan 27 01:33:02 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
reorganise finley src tree to remove inc dir and src/finley directory


Revision 470 - Directory Listing
Modified Fri Jan 27 00:10:54 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
test commit - minor comment changes


Revision 469 - Directory Listing
Modified Fri Jan 27 00:00:44 2006 UTC (11 years, 10 months ago) by svn
Original Path: trunk
remove paul from list of autotest mailout recipients


Revision 468 - Directory Listing
Modified Wed Jan 25 06:50:39 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
reorganised esysUtils to remove inc directory

Revision 467 - Directory Listing
Modified Wed Jan 25 05:43:46 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
adjustments to includes to allow for new paso src tree structure

Revision 466 - Directory Listing
Modified Wed Jan 25 01:25:18 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
remove redundant inc dir from paso src tree

Revision 465 - Directory Listing
Modified Wed Jan 25 01:08:17 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
reorganise bruce source tree:
move all from src/Bruce -> src
remove inc
adjust all #includes appropriately



Revision 464 - Directory Listing
Modified Wed Jan 25 00:42:41 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
typo fixed: the anisotropic problems are returneing the correct answer now.

Revision 463 - Directory Listing
Modified Wed Jan 25 00:06:47 2006 UTC (11 years, 10 months ago) by svn
Original Path: trunk
now run autotest script with debug compiles switched off


Revision 462 - Directory Listing
Modified Wed Jan 25 00:02:03 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
traceback added

Revision 461 - Directory Listing
Modified Wed Jan 25 00:01:12 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
systems benchmarks run now

Revision 460 - Directory Listing
Modified Tue Jan 24 07:53:39 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
some mopre problems added

Revision 459 - Directory Listing
Modified Tue Jan 24 07:51:02 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
some mopre problems added

Revision 458 - Directory Listing
Modified Tue Jan 24 06:20:50 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
None options are excepted now. makes life a bit easier

Revision 457 - Directory Listing
Modified Tue Jan 24 06:13:03 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
fix installation to directories specified by pyinstall and libinstall


Revision 456 - Directory Listing
Modified Tue Jan 24 04:38:50 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
minor formatting changes


Revision 455 - Directory Listing
Modified Tue Jan 24 04:36:54 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
minor comment and formatting changes


Revision 454 - Directory Listing
Modified Tue Jan 24 01:34:31 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
replace libdir default settings - SConstruct was broken without them


Revision 453 - Directory Listing
Modified Tue Jan 24 01:23:28 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
reset the solver

Revision 452 - Directory Listing
Modified Mon Jan 23 23:48:50 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
iter_max increased

Revision 451 - Directory Listing
Modified Mon Jan 23 23:45:43 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
failing rin is catched now.

Revision 450 - Directory Listing
Modified Mon Jan 23 05:04:45 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
remove old make based build system


Revision 449 - Directory Listing
Modified Mon Jan 23 03:48:51 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk
finley source directories now merged into one directory: src/finley


Revision 448 - Directory Listing
Modified Mon Jan 23 03:04:06 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
small typy fixed

Revision 447 - Directory Listing
Modified Mon Jan 23 02:59:59 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
a simple linear elastic solver

Revision 446 - Directory Listing
Modified Mon Jan 23 00:36:07 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
typo fixed

Revision 445 - Directory Listing
Modified Sun Jan 22 23:58:14 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
obsolet GradTest removed

Revision 444 - Directory Listing
Modified Sun Jan 22 23:56:14 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
required modifications to get the tests going

Revision 443 - Directory Listing
Modified Fri Jan 20 06:22:38 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
L2 function added

Revision 442 - Directory Listing
Modified Fri Jan 20 04:39:43 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
kronecker (and relatives) take now a FunctionSpace as argument and return a Data object in tthis functionspace

Revision 441 - Directory Listing
Modified Fri Jan 20 03:40:39 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
and finally test for the divergence operator added. div() has been modified to take Symbol arguments

Revision 440 - Directory Listing
Modified Fri Jan 20 02:15:48 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
tests for normals at boundary and contact region added

Revision 439 - Directory Listing
Modified Fri Jan 20 01:46:22 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
tests for interpolation added

Revision 438 - Directory Listing
Modified Fri Jan 20 00:39:00 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
test for the grad fucntion added

Revision 437 - Directory Listing
Modified Fri Jan 20 00:16:58 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
comprehensive testing for integrate function added. tests for grad will be added in the next check in. GradTest is obsolete now.

Revision 436 - Directory Listing
Modified Thu Jan 19 22:36:36 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
bug fixed in integrate method. don;t use a[i,j]=.. to set a value in the numeric::array a but 
a[make_tuple(i,j)].



Revision 435 - Directory Listing
Modified Thu Jan 19 03:57:30 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
minor change

Revision 434 - Directory Listing
Modified Thu Jan 19 01:53:16 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk
prints out the benchmark been started

Revision 433 - Directory Listing
Modified Tue Jan 17 23:54:38 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
new function inverse and tests added

Revision 432 - Directory Listing
Modified Fri Jan 13 07:38:54 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
some fixes for openmp

Revision 431 - Directory Listing
Modified Fri Jan 13 05:07:10 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
new implementation of ILU0

Revision 430 - Directory Listing
Modified Wed Jan 11 06:40:50 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
ILU has been replicated is called RILU (recursive ILU) now. ILU will now be reimplemented.

Revision 429 - Directory Listing
Modified Wed Jan 11 05:53:40 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
new implementation and testing for trace function

Revision 428 - Directory Listing
Modified Wed Jan 11 01:38:16 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
interplotared is changed from method to function call

Revision 427 - Directory Listing
Modified Tue Jan 10 04:24:07 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
typo fixed

Revision 426 - Directory Listing
Modified Tue Jan 10 04:17:43 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
some commends added


Revision 425 - Directory Listing
Modified Tue Jan 10 04:10:39 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
The sparse solver can be called by paso now. 

the building has been change to reduce some code redundancy:
now all scons SCscripts are importing scons/esys_options.py which
imports platform specific settings. 




Revision 424 - Directory Listing
Modified Tue Jan 10 04:06:58 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
some minor changes


Revision 423 - Directory Listing
Modified Fri Jan 6 08:09:43 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
some modifications in visualization to get equidistant output

Revision 422 - Directory Listing
Modified Fri Jan 6 03:10:54 2006 UTC (11 years, 11 months ago) by cochrane
Original Path: trunk
Implemented plotting of escript Data objects.  This only works with the vtk
renderer module at this stage.



Revision 421 - Directory Listing
Modified Fri Jan 6 03:09:11 2006 UTC (11 years, 11 months ago) by cochrane
Original Path: trunk
Updated to current version of .todo file.


Revision 420 - Directory Listing
Modified Fri Jan 6 03:08:28 2006 UTC (11 years, 11 months ago) by cochrane
Original Path: trunk
Updated to current state of .todo file.


Revision 419 - Directory Listing
Modified Fri Jan 6 03:01:27 2006 UTC (11 years, 11 months ago) by cochrane
Original Path: trunk
Initial import to repository.  This is the vtk-specific code for the arrow
plot example.


Revision 418 - Directory Listing
Modified Fri Jan 6 01:55:18 2006 UTC (11 years, 11 months ago) by cochrane
Original Path: trunk
Initial import to repository.  This is the script that runs all the escript
example scripts.


Revision 417 - Directory Listing
Modified Fri Jan 6 01:54:48 2006 UTC (11 years, 11 months ago) by cochrane
Original Path: trunk
Initial import to repository.  These are the example scripts specific for
escript Data object testing.


Revision 416 - Directory Listing
Modified Wed Jan 4 05:38:35 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
changes in Paso have been worked in

Revision 415 - Directory Listing
Modified Wed Jan 4 05:37:33 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
a better way of representing the matrix format type is introduced. this is needed for the Paradiso and UMFPACK interface

Revision 414 - Directory Listing
Modified Wed Jan 4 05:29:05 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
bug in CPP substitute fixed.

Revision 413 - Directory Listing
Modified Tue Jan 3 08:27:19 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
inner returns right functionspace now

Revision 412 - Directory Listing
Modified Tue Jan 3 00:41:56 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
nicer wahy of representing the natrix format is introduced

Revision 411 - Directory Listing
Modified Tue Jan 3 00:23:48 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk
SCSL interface has moved


Revision 410 - Directory Listing
Modified Fri Dec 23 01:27:38 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
bug fixed

Revision 409 - Directory Listing
Modified Fri Dec 23 01:13:41 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
bug fixed

Revision 408 - Directory Listing
Modified Fri Dec 23 00:56:56 2005 UTC (11 years, 11 months ago) by cochrane
Original Path: trunk
Added a check to make sure the vtk file exists.


Revision 407 - Directory Listing
Modified Fri Dec 23 00:45:08 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
bug fixed

Revision 406 - Directory Listing
Modified Fri Dec 23 00:39:59 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
bug fixed

Revision 405 - Directory Listing
Modified Thu Dec 22 23:05:31 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
small bug fixed

Revision 404 - Directory Listing
Modified Thu Dec 22 23:04:55 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
direct solver works for symmetry flag now

Revision 403 - Directory Listing
Modified Thu Dec 22 22:54:32 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
solver method is now selcted by matrix format

Revision 402 - Directory Listing
Modified Thu Dec 22 22:46:54 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
cut of for small values

Revision 401 - Directory Listing
Modified Thu Dec 22 06:39:36 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
some new models added

Revision 400 - Directory Listing
Modified Wed Dec 21 23:13:39 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
Some chnages required for oder numarray versions. mai problem is that
operations on array objects with rank 0 sometimes return float rather
than arrays. This problem seems to be fixed in newer releases.



Revision 399 - Directory Listing
Modified Wed Dec 21 22:43:48 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
frame to run a single test out of the test_util suite

Revision 398 - Directory Listing
Modified Wed Dec 21 07:52:54 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
file reader added

Revision 397 - Directory Listing
Modified Wed Dec 21 05:11:31 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
typo fixed

Revision 396 - Directory Listing
Modified Wed Dec 21 05:08:25 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
tests for clip, maximum, minimum added

Revision 395 - Directory Listing
Modified Wed Dec 21 02:41:59 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
test is splitted to reduce memory demand during compilation

Revision 394 - Directory Listing
Modified Tue Dec 20 07:20:32 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
symmetric matrix in SCSL switched off

Revision 393 - Directory Listing
Modified Tue Dec 20 05:40:43 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
set number of threads works now

Revision 392 - Directory Listing
Modified Tue Dec 20 05:39:30 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
Utils added for compilation

Revision 391 - Directory Listing
Modified Tue Dec 20 05:36:50 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
intreface for setting the number of threads from python

Revision 390 - Directory Listing
Modified Tue Dec 20 03:39:24 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
os.loginname does not work under pbs. the exception is caught now

Revision 389 - Directory Listing
Modified Tue Dec 20 03:17:28 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
Laplace benchmarks added

Revision 388 - Directory Listing
Modified Tue Dec 20 03:13:17 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
laplace benchmarks added

Revision 387 - Directory Listing
Modified Tue Dec 20 00:37:20 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
scale allows now to switch on and off certain problems

Revision 386 - Directory Listing
Modified Tue Dec 20 00:31:52 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
the number of problems to run is now the less or equal then len(scale) and less or equal number of problems. This allows easier control

Revision 385 - Directory Listing
Modified Mon Dec 19 06:12:14 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
filerrs added

Revision 384 - Directory Listing
Modified Mon Dec 19 06:11:32 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
finleybench is build now

Revision 383 - Directory Listing
Modified Mon Dec 19 06:10:45 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
Finley options added plus some other stuff

Revision 382 - Directory Listing
Modified Mon Dec 19 06:09:49 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
run finley benchmark

Revision 381 - Directory Listing
Modified Mon Dec 19 03:15:44 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
first version of a finley benchmark suite for test the paso solver

Revision 380 - Directory Listing
Modified Mon Dec 19 01:54:51 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
the documenation build does not work at all except on our altix. has been switcehed of for now

Revision 379 - Directory Listing
Modified Mon Dec 19 01:10:34 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk
a filetr added

Revision 378 - Directory Listing
Modified Fri Dec 16 09:02:28 2005 UTC (12 years ago) by gross
Original Path: trunk
clip added

Revision 377 - Directory Listing
Modified Fri Dec 16 02:00:35 2005 UTC (12 years ago) by jgs
Original Path: trunk
add a few more escript python tests to the list executed

Revision 376 - Directory Listing
Modified Fri Dec 16 01:49:18 2005 UTC (12 years ago) by jgs
Original Path: trunk
removed redundant test

Revision 375 - Directory Listing
Modified Fri Dec 16 01:44:11 2005 UTC (12 years ago) by jgs
Original Path: trunk
fix method names to match new scheme

Revision 374 - Directory Listing
Modified Fri Dec 16 01:35:07 2005 UTC (12 years ago) by jgs
Original Path: trunk
fix names of log/ln functions to match new scheme


Revision 373 - Directory Listing
Modified Fri Dec 16 01:31:06 2005 UTC (12 years ago) by jgs
Original Path: trunk
modified number of data points in mesh to allow
testing with Bruce Function objects


Revision 372 - Directory Listing
Modified Fri Dec 16 01:12:41 2005 UTC (12 years ago) by jgs
Original Path: trunk
explicitly initialise integer members to zero

Revision 371 - Directory Listing
Modified Fri Dec 16 00:57:13 2005 UTC (12 years ago) by cochrane
Original Path: trunk
Added ability to specify the compression pattern at the command line.


Revision 370 - Directory Listing
Modified Fri Dec 16 00:52:34 2005 UTC (12 years ago) by cochrane
Original Path: trunk
Updated to allow for building of API documentation.


Revision 369 - Directory Listing
Modified Fri Dec 16 00:51:22 2005 UTC (12 years ago) by cochrane
Original Path: trunk
Building of API documentation now works.  Both epydoc- and doxygen-generated
docs are built.


Revision 368 - Directory Listing
Modified Thu Dec 15 23:23:12 2005 UTC (12 years ago) by gross
Original Path: trunk
and a bit more on version detection

Revision 367 - Directory Listing
Modified Thu Dec 15 22:55:46 2005 UTC (12 years ago) by gross
Original Path: trunk
include file for python is now detected

Revision 366 - Directory Listing
Modified Thu Dec 15 06:05:55 2005 UTC (12 years ago) by svn
Original Path: trunk
formatting changes


Revision 365 - Directory Listing
Modified Thu Dec 15 05:00:05 2005 UTC (12 years ago) by jgs
Original Path: trunk
formatting changes

Revision 364 - Directory Listing
Modified Thu Dec 15 04:38:28 2005 UTC (12 years ago) by gross
Original Path: trunk
a simple environment to run benchmarks (mainly for testing solvers)

Revision 363 - Directory Listing
Modified Thu Dec 15 04:38:19 2005 UTC (12 years ago) by jgs
Original Path: trunk
moved to scons based autotest now

Revision 362 - Directory Listing
Modified Thu Dec 15 02:07:55 2005 UTC (12 years ago) by jgs
Original Path: trunk
removed unit-test runner scripts as unit-tests now run from scons

Revision 361 - Directory Listing
Modified Thu Dec 15 02:04:58 2005 UTC (12 years ago) by jgs
Original Path: trunk
autotest script now runs unit tests via scons

Revision 360 - Directory Listing
Modified Thu Dec 15 01:52:16 2005 UTC (12 years ago) by jgs
Original Path: trunk
add target to run all unit tests, the build will fail
for this target if any unit test fails


Revision 359 - Directory Listing
Modified Thu Dec 15 01:08:03 2005 UTC (12 years ago) by jgs
Original Path: trunk
runUnitTest now returns an error code if the test fails


Revision 358 - Directory Listing
Modified Wed Dec 14 07:55:19 2005 UTC (12 years ago) by cochrane
Original Path: trunk
Updated link to epydoc generated documentation on the web site.


Revision 357 - Directory Listing
Modified Wed Dec 14 05:41:24 2005 UTC (12 years ago) by jgs
Original Path: trunk
add explicit target to run unit tests


Revision 356 - Directory Listing
Modified Wed Dec 14 05:37:24 2005 UTC (12 years ago) by jgs
Original Path: trunk
add scons line to build unit-tests


Revision 355 - Directory Listing
Modified Wed Dec 14 05:05:31 2005 UTC (12 years ago) by jgs
Original Path: trunk
add explicit target for building of unit tests


Revision 354 - Directory Listing
Modified Wed Dec 14 04:46:17 2005 UTC (12 years ago) by cochrane
Original Path: trunk
Fixed paths for new running of docs autobuild.


Revision 353 - Directory Listing
Modified Wed Dec 14 04:13:59 2005 UTC (12 years ago) by gross
Original Path: trunk
bug fixed (thanks to Estelle)

Revision 352 - Directory Listing
Modified Wed Dec 14 02:21:37 2005 UTC (12 years ago) by jgs
Original Path: trunk
turns out Install() targets should also be made Default()
targets if you want them to actually reliably work!


Revision 351 - Directory Listing
Modified Tue Dec 13 09:12:15 2005 UTC (12 years ago) by gross
Original Path: trunk
time integration manger added

Revision 350 - Directory Listing
Modified Tue Dec 13 09:11:52 2005 UTC (12 years ago) by gross
Original Path: trunk
test for time integration manger added

Revision 349 - Directory Listing
Modified Tue Dec 13 07:35:31 2005 UTC (12 years ago) by gross
Original Path: trunk
bug fixed

Revision 348 - Directory Listing
Modified Tue Dec 13 07:33:10 2005 UTC (12 years ago) by gross
Original Path: trunk
advection diffusion class added

Revision 347 - Directory Listing
Modified Tue Dec 13 06:16:16 2005 UTC (12 years ago) by svn
Original Path: trunk
fix mail recipients list

Revision 346 - Directory Listing
Modified Tue Dec 13 05:31:48 2005 UTC (12 years ago) by svn
Original Path: trunk
fix setting of working directory

Revision 345 - Directory Listing
Modified Tue Dec 13 05:23:45 2005 UTC (12 years ago) by gross
Original Path: trunk
advection diffusion class added

Revision 344 - Directory Listing
Modified Tue Dec 13 05:17:32 2005 UTC (12 years ago) by svn
Original Path: trunk
now report name of python tests scripts which fail

Revision 343 - Directory Listing
Modified Tue Dec 13 03:39:42 2005 UTC (12 years ago) by jgs
Original Path: trunk
create build directory structure for documentation

Revision 342 - Directory Listing
Modified Tue Dec 13 01:50:42 2005 UTC (12 years ago) by jgs
Original Path: trunk
minor formatting fix


Revision 341 - Directory Listing
Modified Mon Dec 12 05:26:10 2005 UTC (12 years ago) by gross
Original Path: trunk
some fixes to make the test to run for older numarray versions

Revision 340 - Directory Listing
Modified Mon Dec 12 05:10:45 2005 UTC (12 years ago) by jgs
Original Path: trunk
pass in pyinstall value from top-level scons script and add
correct suffix in module level scons scipr


Revision 339 - Directory Listing
Modified Mon Dec 12 04:22:19 2005 UTC (12 years ago) by jgs
Original Path: trunk
add extra tests to list of python tests to run
keep going with tests even once one test fails


Revision 338 - Directory Listing
Modified Mon Dec 12 02:05:32 2005 UTC (12 years ago) by jgs
Original Path: trunk
removed links which are now managed by svn

Revision 337 - Directory Listing
Modified Mon Dec 12 01:57:07 2005 UTC (12 years ago) by cochrane
Original Path: trunk
Initial merge of pyvisi into esys repository.

Revision 336 - Directory Listing
Modified Thu Dec 8 23:34:44 2005 UTC (12 years ago) by svn
Original Path: trunk
add esysUtils unit tests

Revision 335 - Directory Listing
Modified Thu Dec 8 22:55:50 2005 UTC (12 years ago) by jgs
Original Path: trunk
script to run esysUtils unit tests


Revision 334 - Directory Listing
Modified Thu Dec 8 22:52:12 2005 UTC (12 years ago) by jgs
Original Path: trunk
use socket.gethostname() to get host name


Revision 331 - Directory Listing
Modified Wed Dec 7 06:46:24 2005 UTC (12 years ago) by svn
Original Path: trunk
fix list of mail recipients

Revision 330 - Directory Listing
Modified Wed Dec 7 06:31:27 2005 UTC (12 years ago) by svn
Original Path: trunk
rough script to run autotest using scons build system

Revision 329 - Directory Listing
Modified Wed Dec 7 04:42:43 2005 UTC (12 years ago) by gross
Original Path: trunk
fixing the problem that older versions of numarray don't have a sign method

Revision 328 - Directory Listing
Modified Wed Dec 7 04:41:53 2005 UTC (12 years ago) by gross
Original Path: trunk
start to remove slicing opertions

Revision 327 - Directory Listing
Modified Wed Dec 7 04:32:28 2005 UTC (12 years ago) by gross
Original Path: trunk
make them run again

Revision 326 - Directory Listing
Modified Wed Dec 7 03:55:19 2005 UTC (12 years ago) by cochrane
Original Path: trunk
Fixed bug with not getting the movie parameter correctly.  Also no longer
cleaning up the movie files if the movie generation failed.


Revision 325 - Directory Listing
Modified Wed Dec 7 02:08:17 2005 UTC (12 years ago) by jgs
Original Path: trunk
now determine hostname via socket.gethostname() as HOSTNAME
environment variable is apparently not set on all platforms


Revision 324 - Directory Listing
Modified Wed Dec 7 01:10:36 2005 UTC (12 years ago) by jgs
Original Path: trunk
add symlinks to include files - previously added by hand as cvs couldn't
handle them


Revision 323 - Directory Listing
Modified Tue Dec 6 06:18:00 2005 UTC (12 years ago) by gross
Original Path: trunk
whereZero methods changed to functions

Revision 322 - Directory Listing
Modified Tue Dec 6 04:53:30 2005 UTC (12 years ago) by jgs
Original Path: trunk
add modelframe.py to list of python modules to install


Revision 321 - Directory Listing
Modified Tue Dec 6 04:46:50 2005 UTC (12 years ago) by jgs
Original Path: trunk
rough python test running code added

Revision 320 - Directory Listing
Modified Tue Dec 6 04:35:27 2005 UTC (12 years ago) by svn
Original Path: trunk
unit tests now run ok

Revision 319 - Directory Listing
Modified Tue Dec 6 04:25:37 2005 UTC (12 years ago) by jgs
Original Path: trunk
temporary unit tests scripts

Revision 318 - Directory Listing
Modified Tue Dec 6 02:25:26 2005 UTC (12 years ago) by jgs
Original Path: trunk
draft autotest script using the scons build system

Revision 317 - Directory Listing
Modified Tue Dec 6 01:36:53 2005 UTC (12 years ago) by svn
Original Path: trunk
add Lutz's new tests for finley and bruce to list of python tests
run by ./mk py_test


Revision 316 - Directory Listing
Modified Tue Dec 6 01:16:05 2005 UTC (12 years ago) by jgs
Original Path: trunk
fix this test


Revision 315 - Directory Listing
Modified Tue Dec 6 01:13:57 2005 UTC (12 years ago) by jgs
Original Path: trunk
change method calls to match new names for Data methods


Revision 314 - Directory Listing
Modified Tue Dec 6 00:55:22 2005 UTC (12 years ago) by jgs
Original Path: trunk
rename method calls to match new Data boost interface names


Revision 313 - Directory Listing
Modified Mon Dec 5 07:01:36 2005 UTC (12 years ago) by gross
Original Path: trunk
and a bit more tests

Revision 312 - Directory Listing
Modified Mon Dec 5 07:01:00 2005 UTC (12 years ago) by gross
Original Path: trunk
reimplementation of maxval,minval and length. small bug in generalTensorProduct fixed

Revision 311 - Directory Listing
Modified Mon Dec 5 02:59:54 2005 UTC (12 years ago) by jgs
Original Path: trunk
remove references to ln and length methods which have been removed
from class Data


Revision 310 - Directory Listing
Modified Mon Dec 5 02:52:38 2005 UTC (12 years ago) by jgs
Original Path: trunk
don't automatically run bruce unit tests on build for now


Revision 309 - Directory Listing
Modified Mon Dec 5 01:59:58 2005 UTC (12 years ago) by jgs
Original Path: trunk
now load default options - by default!


Revision 308 - Directory Listing
Modified Mon Dec 5 01:58:33 2005 UTC (12 years ago) by jgs
Original Path: trunk
rename


Revision 307 - Directory Listing
Modified Mon Dec 5 01:58:18 2005 UTC (12 years ago) by jgs
Original Path: trunk
build unit tests from main scons file now


Revision 306 - Directory Listing
Modified Mon Dec 5 00:48:01 2005 UTC (12 years ago) by jgs
Original Path: trunk
add dependency between unit test and library


Revision 304 - Directory Listing
Modified Fri Dec 2 06:04:06 2005 UTC (12 years ago) by gross
Original Path: trunk
changes in util.py worked in

Revision 303 - Directory Listing
Modified Fri Dec 2 05:54:01 2005 UTC (12 years ago) by gross
Original Path: trunk
is now in modellib

Revision 302 - Directory Listing
Modified Fri Dec 2 05:51:51 2005 UTC (12 years ago) by gross
Original Path: trunk
runs again

Revision 301 - Directory Listing
Modified Fri Dec 2 05:49:29 2005 UTC (12 years ago) by gross
Original Path: trunk
runs again

Revision 300 - Directory Listing
Modified Fri Dec 2 05:47:17 2005 UTC (12 years ago) by gross
Original Path: trunk
runs again

Revision 299 - Directory Listing
Modified Fri Dec 2 05:45:38 2005 UTC (12 years ago) by gross
Original Path: trunk
runs again

Revision 298 - Directory Listing
Modified Fri Dec 2 05:42:11 2005 UTC (12 years ago) by gross
Original Path: trunk
runs again

Revision 297 - Directory Listing
Modified Fri Dec 2 04:57:48 2005 UTC (12 years ago) by jgs
Original Path: trunk
bruce tests cases are now automatically run whenever they are rebuilt


Revision 296 - Directory Listing
Modified Fri Dec 2 03:55:36 2005 UTC (12 years ago) by gross
Original Path: trunk
test passes now

Revision 295 - Directory Listing
Modified Fri Dec 2 03:53:35 2005 UTC (12 years ago) by gross
Original Path: trunk
test for symbol.py on bruce

Revision 294 - Directory Listing
Modified Fri Dec 2 03:47:30 2005 UTC (12 years ago) by gross
Original Path: trunk
test of symbols.py with python

Revision 293 - Directory Listing
Modified Fri Dec 2 03:46:39 2005 UTC (12 years ago) by gross
Original Path: trunk
updated

Revision 292 - Directory Listing
Modified Fri Dec 2 03:11:04 2005 UTC (12 years ago) by gross
Original Path: trunk
complete test set for generalTensorProduct and friends added.

Revision 291 - Directory Listing
Modified Fri Dec 2 03:10:06 2005 UTC (12 years ago) by gross
Original Path: trunk
just my private test generator

Revision 290 - Directory Listing
Modified Fri Dec 2 03:09:32 2005 UTC (12 years ago) by gross
Original Path: trunk
some minor bugs in util.py fixed.

Revision 289 - Directory Listing
Modified Fri Dec 2 03:08:26 2005 UTC (12 years ago) by gross
Original Path: trunk
new test for util.py on bruce

Revision 288 - Directory Listing
Modified Fri Dec 2 01:55:04 2005 UTC (12 years ago) by jgs
Original Path: trunk
now automatically build unit tests as required based on dependencies
between unit tests and libraries


Revision 287 - Directory Listing
Modified Thu Dec 1 06:40:51 2005 UTC (12 years ago) by gross
Original Path: trunk
more tests added

Revision 286 - Directory Listing
Modified Thu Dec 1 06:40:20 2005 UTC (12 years ago) by gross
Original Path: trunk
length method is removed as it is too slow. use length in util.py instead

Revision 285 - Directory Listing
Modified Thu Dec 1 06:40:04 2005 UTC (12 years ago) by gross
Original Path: trunk
length method is removed as it is too slow. use length in util.py instead

Revision 284 - Directory Listing
Modified Thu Dec 1 06:39:23 2005 UTC (12 years ago) by gross
Original Path: trunk
test are passed now

Revision 283 - Directory Listing
Modified Wed Nov 30 23:35:29 2005 UTC (12 years ago) by gross
Original Path: trunk
some stuff

Revision 282 - Directory Listing
Modified Wed Nov 30 09:18:38 2005 UTC (12 years ago) by elspeth
Original Path: trunk
Fixed XML duplication in output bug.


Revision 281 - Directory Listing
Modified Wed Nov 30 09:10:59 2005 UTC (12 years ago) by elspeth
Original Path: trunk
Fixed import problem


Revision 280 - Directory Listing
Modified Wed Nov 30 06:23:59 2005 UTC (12 years ago) by cochrane
Original Path: trunk
Using the tsunami initial amplitude to determine the wave height mapper
scalar range.


Revision 279 - Directory Listing
Modified Wed Nov 30 05:23:09 2005 UTC (12 years ago) by jgs
Original Path: trunk
links to esys shared libraries


Revision 278 - Directory Listing
Modified Wed Nov 30 05:22:00 2005 UTC (12 years ago) by jgs
Original Path: trunk
__init__.py file for the esys python modules


Revision 277 - Directory Listing
Modified Wed Nov 30 04:52:39 2005 UTC (12 years ago) by jgs
Original Path: trunk
explicitly define dependencies between modules


Revision 276 - Directory Listing
Modified Wed Nov 30 04:31:40 2005 UTC (12 years ago) by cochrane
Original Path: trunk
Replaced wave grid creation code to load wave grid from file.


Revision 275 - Directory Listing
Modified Wed Nov 30 04:27:00 2005 UTC (12 years ago) by jgs
Original Path: trunk
remove -ftz flag from linker flags - has no effect anyway


Revision 274 - Directory Listing
Modified Wed Nov 30 04:16:39 2005 UTC (12 years ago) by jgs
Original Path: trunk
fix list of targets


Revision 273 - Directory Listing
Modified Wed Nov 30 03:30:40 2005 UTC (12 years ago) by gross
Original Path: trunk
cast to float added. this avoids problems with very small values

Revision 272 - Directory Listing
Modified Wed Nov 30 03:30:30 2005 UTC (12 years ago) by gross
Original Path: trunk
cast to float added. this avoids problems with very small coodinates.

Revision 271 - Directory Listing
Modified Wed Nov 30 03:27:30 2005 UTC (12 years ago) by gross
Original Path: trunk
cast to float added. this avoids problems with very small values

Revision 270 - Directory Listing
Modified Wed Nov 30 02:00:26 2005 UTC (12 years ago) by elspeth
Original Path: trunk
Fixed imports


Revision 269 - Directory Listing
Modified Wed Nov 30 01:59:55 2005 UTC (12 years ago) by elspeth
Original Path: trunk
Fixed typos and import problems


Revision 268 - Directory Listing
Modified Wed Nov 30 01:39:47 2005 UTC (12 years ago) by jgs
Original Path: trunk
setup scons configuration to make and install python code


Revision 267 - Directory Listing
Modified Wed Nov 30 01:13:10 2005 UTC (12 years ago) by jgs
Original Path: trunk
fixed typo in options string


Revision 266 - Directory Listing
Modified Wed Nov 30 00:21:51 2005 UTC (12 years ago) by elspeth
Original Path: trunk
Added handling for NoneType


Revision 265 - Directory Listing
Modified Tue Nov 29 22:56:08 2005 UTC (12 years ago) by elspeth
Original Path: trunk
Minor bugfix - should now actually run simulations


Revision 264 - Directory Listing
Modified Tue Nov 29 10:06:39 2005 UTC (12 years ago) by cochrane
Original Path: trunk
Removing image files after generation of movie.


Revision 263 - Directory Listing
Modified Tue Nov 29 09:55:16 2005 UTC (12 years ago) by cochrane
Original Path: trunk
Added visualisation of bathymmetry data, the coastline and the wave height
data as per earlier tsunami movies.  Also autogenerates the .params file for
ppmtompeg and generates the movie automatically.


Revision 262 - Directory Listing
Modified Tue Nov 29 07:35:12 2005 UTC (12 years ago) by gross
Original Path: trunk
tsunami added

Revision 261 - Directory Listing
Modified Tue Nov 29 07:34:35 2005 UTC (12 years ago) by gross
Original Path: trunk
runmodel added

Revision 260 - Directory Listing
Modified Tue Nov 29 07:34:06 2005 UTC (12 years ago) by gross
Original Path: trunk
small fix

Revision 259 - Directory Listing
Modified Tue Nov 29 07:14:41 2005 UTC (12 years ago) by gross
Original Path: trunk
some minor fixes

Revision 258 - Directory Listing
Modified Tue Nov 29 06:43:14 2005 UTC (12 years ago) by jgs
Original Path: trunk
add options file for the prism (not tested yet)


Revision 257 - Directory Listing
Modified Tue Nov 29 06:23:50 2005 UTC (12 years ago) by jgs
Original Path: trunk
fixed specification of solver libs


Revision 256 - Directory Listing
Modified Tue Nov 29 06:22:53 2005 UTC (12 years ago) by jgs
Original Path: trunk
fixed specification of solver libs


Revision 255 - Directory Listing
Modified Tue Nov 29 06:13:22 2005 UTC (12 years ago) by jgs
Original Path: trunk
pass in solver libraries to link with via options files now

Revision 254 - Directory Listing
Modified Tue Nov 29 06:12:55 2005 UTC (12 years ago) by jgs
Original Path: trunk
another alternative options file


Revision 253 - Directory Listing
Modified Tue Nov 29 06:05:20 2005 UTC (12 years ago) by jgs
Original Path: trunk
missed this one

Revision 252 - Directory Listing
Modified Tue Nov 29 05:58:03 2005 UTC (12 years ago) by jgs
Original Path: trunk
pass in platform specific libraries via options files now


Revision 251 - Directory Listing
Modified Tue Nov 29 05:54:06 2005 UTC (12 years ago) by gross
Original Path: trunk
problems with coordinate axis fixed

Revision 250 - Directory Listing
Modified Tue Nov 29 05:32:57 2005 UTC (12 years ago) by gross
Original Path: trunk
initial checkin

Revision 249 - Directory Listing
Modified Tue Nov 29 05:29:09 2005 UTC (12 years ago) by jgs
Original Path: trunk
fix compiler options to enable compilation on gcc platforms

Revision 248 - Directory Listing
Modified Tue Nov 29 04:58:23 2005 UTC (12 years ago) by jgs
Original Path: trunk
add top level scons config files to allow building
of all unit tests for each module at once


Revision 247 - Directory Listing
Modified Tue Nov 29 04:57:38 2005 UTC (12 years ago) by gross
Original Path: trunk
initial checkin 


Revision 246 - Directory Listing
Modified Tue Nov 29 04:27:00 2005 UTC (12 years ago) by jgs
Original Path: trunk
allow compile options to be loaded from a config
file specified on the command line to scons


Revision 245 - Directory Listing
Modified Tue Nov 29 02:11:05 2005 UTC (12 years ago) by jgs
Original Path: trunk
added some comments and reasonable default values

Revision 244 - Directory Listing
Modified Tue Nov 29 00:27:10 2005 UTC (12 years ago) by jgs
Original Path: trunk
fixed an accidental commit which broke this script


Revision 243 - Directory Listing
Modified Mon Nov 28 06:36:40 2005 UTC (12 years ago) by jgs
Original Path: trunk
add a default options file - basis for other custom options files


Revision 242 - Directory Listing
Modified Mon Nov 28 06:20:51 2005 UTC (12 years ago) by jgs
Original Path: trunk
draft toplevel unit test scons script for bruce unit tests


Revision 241 - Directory Listing
Modified Mon Nov 28 06:14:47 2005 UTC (12 years ago) by jgs
Original Path: trunk
if usegcc=1 is set on command line, load compiler options
fropm scons/gcc_options.py


Revision 239 - Directory Listing
Modified Mon Nov 28 05:49:32 2005 UTC (12 years ago) by jgs
Original Path: trunk
read names of python and boost libraries from config file now


Revision 238 - Directory Listing
Modified Mon Nov 28 05:33:38 2005 UTC (12 years ago) by jgs
Original Path: trunk
fix quoting of library names


Revision 237 - Directory Listing
Modified Mon Nov 28 05:26:43 2005 UTC (12 years ago) by jgs
Original Path: trunk
first draft of options file for gcc platforms


Revision 236 - Directory Listing
Modified Mon Nov 28 05:25:35 2005 UTC (12 years ago) by jgs
Original Path: trunk
add names of python and boost libraries to config file


Revision 235 - Directory Listing
Modified Mon Nov 28 04:36:16 2005 UTC (12 years ago) by jgs
Original Path: trunk
change scons config files for escript unit tests to read
compiler options from option file now


Revision 228 - Directory Listing
Modified Fri Nov 25 02:01:14 2005 UTC (12 years ago) by jgs
Original Path: trunk
now read compile options from options file


Revision 227 - Directory Listing
Modified Fri Nov 25 01:49:23 2005 UTC (12 years ago) by jgs
Original Path: trunk
now load compile options from options file


Revision 226 - Directory Listing
Modified Fri Nov 25 01:40:04 2005 UTC (12 years ago) by jgs
Original Path: trunk
import compile options into bruce unit test builds from options file now


Revision 225 - Directory Listing
Modified Fri Nov 25 01:22:34 2005 UTC (12 years ago) by jgs
Original Path: trunk
pass in correct options to archiver for static libraries

Revision 224 - Directory Listing
Modified Fri Nov 25 00:33:27 2005 UTC (12 years ago) by jgs
Original Path: trunk
implement switching of debug compiler options based on command line flag 'debug'

Revision 223 - Directory Listing
Modified Thu Nov 24 23:12:13 2005 UTC (12 years ago) by jgs
Original Path: trunk
pass in cc/cxx settings from config file

Revision 217 - Directory Listing
Modified Thu Nov 24 06:48:50 2005 UTC (12 years ago) by jgs
Original Path: trunk
import sys

Revision 216 - Directory Listing
Modified Thu Nov 24 06:35:14 2005 UTC (12 years ago) by jgs
Original Path: trunk
first pass at importing compile options from an external file'


Revision 215 - Directory Listing
Modified Thu Nov 24 06:25:15 2005 UTC (12 years ago) by jgs
Original Path: trunk
added directory and first draft file to hold options settings
for different configurations (debug/nodebug, host, etc)


Revision 214 - Directory Listing
Modified Thu Nov 24 05:15:26 2005 UTC (12 years ago) by jgs
Original Path: trunk
collect all information needed to determine build
configuration (ie: debug/nodebug, host, platform etc)


Revision 211 - Directory Listing
Modified Thu Nov 24 00:29:23 2005 UTC (12 years ago) by jgs
Original Path: trunk
removed


Revision 208 - Directory Listing
Modified Wed Nov 23 05:08:45 2005 UTC (12 years ago) by jgs
Original Path: trunk
?


Revision 207 - Directory Listing
Modified Wed Nov 23 05:08:19 2005 UTC (12 years ago) by jgs
Original Path: trunk
fixed permissions on these files


Revision 206 - Directory Listing
Modified Wed Nov 23 05:03:42 2005 UTC (12 years ago) by jgs
Original Path: trunk
remove MeshAdapter test for now - will only work with scons build system


Revision 205 - Directory Listing
Modified Wed Nov 23 05:02:59 2005 UTC (12 years ago) by jgs
Original Path: trunk
fix settings to account for new finley source tree structure


Revision 204 - Directory Listing
Modified Wed Nov 23 04:43:51 2005 UTC (12 years ago) by jgs
Original Path: trunk
revised scons files to account for new finley source tree structure


Revision 203 - Directory Listing
Modified Wed Nov 23 04:36:15 2005 UTC (12 years ago) by jgs
Original Path: trunk
adjust include file names to allow for new finley source tree structure


Revision 202 - Directory Listing
Modified Wed Nov 23 04:18:39 2005 UTC (12 years ago) by jgs
Original Path: trunk
scons builds will now take place in parallel "finley" src dir


Revision 201 - Directory Listing
Modified Wed Nov 23 04:10:21 2005 UTC (12 years ago) by jgs
Original Path: trunk
copy finleyC and CPPAdapter to finley and finley/CPPAdapter to
facilitate scons builds


Revision 199 - Directory Listing
Modified Tue Nov 22 04:57:00 2005 UTC (12 years ago) by jgs
Original Path: trunk
pass in static archiver flags 


Revision 198 - Directory Listing
Modified Tue Nov 22 04:17:02 2005 UTC (12 years ago) by jgs
Original Path: trunk
fix uninstall target to also clean up static libraries (eg: paso)


Revision 197 - Directory Listing
Modified Tue Nov 22 02:01:35 2005 UTC (12 years ago) by jgs
Original Path: trunk
first draft of scons construct file for esysUtils unit tests


Revision 196 - Directory Listing
Modified Tue Nov 22 01:48:33 2005 UTC (12 years ago) by jgs
Original Path: trunk
first draft scons construct files for remaining escript unit tests


Revision 195 - Directory Listing
Modified Tue Nov 22 00:31:11 2005 UTC (12 years ago) by jgs
Original Path: trunk
first draft of scons construct file for BruceFactory unit tests


Revision 193 - Directory Listing
Modified Mon Nov 21 06:41:30 2005 UTC (12 years ago) by jgs
Original Path: trunk
add draft SConstruct file for Bruce unit_tests


Revision 192 - Directory Listing
Modified Mon Nov 21 04:52:14 2005 UTC (12 years ago) by jgs
Original Path: trunk
pass in top level install directory for finley/escript/bruce/paso
libraries when building via top level scons script


Revision 191 - Directory Listing
Modified Mon Nov 21 04:10:12 2005 UTC (12 years ago) by jgs
Original Path: trunk
push platform dependent compiler flags and include directories up to library level scons files - these will eventually be brought in from external config files

Revision 190 - Directory Listing
Modified Mon Nov 21 03:27:42 2005 UTC (12 years ago) by jgs
Original Path: trunk
pass in value for esysroot and use this to determine include file locations

Revision 189 - Directory Listing
Modified Mon Nov 21 03:26:46 2005 UTC (12 years ago) by jgs
Original Path: trunk
add top level SConstruct file to enable coordinated building of all esys libraries

Revision 188 - Directory Listing
Modified Mon Nov 21 01:20:26 2005 UTC (12 years ago) by jgs
Original Path: trunk
explicitly add -fpic option to all compiler options lists
to ensure relocatable code is generated


Revision 187 - Directory Listing
Modified Mon Nov 21 01:15:26 2005 UTC (12 years ago) by jgs
Original Path: trunk
added first draft of scons construct/config scripts for paso library


Revision 184 - Directory Listing
Modified Fri Nov 18 06:14:18 2005 UTC (12 years, 1 month ago) by phornby
Original Path: trunk
Remove unnecessary unary +'s from the numarray.array's because this is broken in some
versions of numarray.



Revision 183 - Directory Listing
Modified Fri Nov 18 05:24:37 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
can now build finleyC/finleycpp concurrently


Revision 182 - Directory Listing
Modified Fri Nov 18 05:07:36 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
first draft of config/construct files for finleyC/finleycpp libraries


Revision 181 - Directory Listing
Modified Fri Nov 18 04:28:47 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
first draft of config/construct scripts for escript library


Revision 180 - Directory Listing
Modified Fri Nov 18 03:29:44 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
first draft of scons config scripts for esysUtils library


Revision 179 - Directory Listing
Modified Fri Nov 18 03:20:34 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
first draft of scons config/construct scripts for mmio library


Revision 178 - Directory Listing
Modified Fri Nov 18 03:13:26 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
first draft of scons config/construct files for CppUnitTest library


Revision 177 - Directory Listing
Modified Fri Nov 18 02:50:20 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
reformatted list of source files


Revision 176 - Directory Listing
Modified Fri Nov 18 01:49:12 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
first draft of scons config/construct files to build brucecpp.so library


Revision 175 - Directory Listing
Modified Fri Nov 11 04:06:00 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
definitely the last test commit!


Revision 174 - Directory Listing
Modified Fri Nov 11 04:03:33 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
possibly the last test commit


Revision 173 - Directory Listing
Modified Fri Nov 11 03:50:50 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
test commit message


Revision 172 - Directory Listing
Modified Fri Nov 11 02:03:48 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
test commit


Revision 171 - Directory Listing
Modified Fri Nov 11 02:02:37 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
test commit


Revision 170 - Directory Listing
Modified Fri Nov 11 02:01:42 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
test commit 


Revision 169 - Directory Listing
Modified Fri Nov 11 01:51:16 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
test commit


Revision 168 - Directory Listing
Modified Fri Nov 11 01:48:47 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
test commit


Revision 167 - Directory Listing
Modified Fri Nov 11 01:39:37 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
test commit


Revision 166 - Directory Listing
Modified Fri Nov 11 01:38:41 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
test commit


Revision 165 - Directory Listing
Modified Fri Nov 11 00:46:40 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
a test commit to svn


Revision 164 - Directory Listing
Modified Fri Nov 11 00:45:35 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
a test commit to svn of mk


Revision 163 - Directory Listing
Modified Fri Nov 11 00:11:34 2005 UTC (12 years, 1 month ago) by svn
Original Path: trunk
remove unreliable finley tests for sake of autotest script


Revision 162 - Directory Listing
Modified Fri Nov 11 00:09:59 2005 UTC (12 years, 1 month ago) by svn
Original Path: trunk
convert autotest script to use svn repository


Revision 161 - Directory Listing
Modified Thu Nov 10 06:49:15 2005 UTC (12 years, 1 month ago) by svn
Original Path: trunk
modifying to use the svn repository


Revision 160 - Directory Listing
Modified Thu Nov 10 05:09:25 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
fixed a broken constructor - simply didn't work


Revision 159 - Directory Listing
Modified Thu Nov 10 04:01:43 2005 UTC (12 years, 1 month ago) by matt
Original Path: trunk
Added a more comprehensive data equivalence test based on X coordinates.



Revision 158 - Directory Listing
Modified Thu Nov 10 03:51:03 2005 UTC (12 years, 1 month ago) by matt
Original Path: trunk
Added finley and bruce rectangle and brick Data archive tests.



Revision 157 - Directory Listing
Modified Wed Nov 9 10:01:06 2005 UTC (12 years, 1 month ago) by gross
Original Path: trunk
initial checkin

Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
move all directories from trunk/esys2 into trunk and remove esys2


Revision 154 - Directory Listing
Modified Mon Nov 7 05:51:17 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
Merge of development branch dev-02 back to main trunk on 2005-11-07


Revision 153 - Directory Listing
Modified Tue Oct 25 01:51:20 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk
Merge of development branch dev-02 back to main trunk on 2005-10-25


Revision 152 - Directory Listing
Modified Fri Oct 21 08:32:21 2005 UTC (12 years, 1 month ago) by phornby
Original Path: trunk
DataConstantTestCase.cpp, DataExpandedTestCase.cpp:

Replace

DataExpanded testData1(FunctionSpace(),....)

with

FunctionSpace tmp_fns;
DataExpanded testData1(tmp_fns,shape,data);

for GCC's sake.




Added some profiling to PoissonSolverTest.py.


Revision 151 - Directory Listing
Modified Thu Sep 22 01:55:00 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk
Merge of development branch dev-02 back to main trunk on 2005-09-22


Revision 150 - Directory Listing
Modified Thu Sep 15 03:44:45 2005 UTC (12 years, 3 months ago) by jgs
Original Path: trunk
Merge of development branch dev-02 back to main trunk on 2005-09-15


Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (12 years, 3 months ago) by jgs
Original Path: trunk
Merge of development branch dev-02 back to main trunk on 2005-09-01


Revision 148 - Directory Listing
Modified Tue Aug 23 01:24:31 2005 UTC (12 years, 3 months ago) by jgs
Original Path: trunk
Merge of development branch dev-02 back to main trunk on 2005-08-23


Revision 147 - Directory Listing
Modified Fri Aug 12 01:45:47 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
erge of development branch dev-02 back to main trunk on 2005-08-12


Revision 146 - Directory Listing
Modified Fri Jul 29 01:44:29 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
First merge of development branch dev-02 back to main trunk on 2005-07-29


Revision 145 - Directory Listing
Modified Mon Jul 25 05:43:00 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
don't build modellib by default


Revision 144 - Directory Listing
Modified Mon Jul 25 05:42:21 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
moved form old modellib directory


Revision 143 - Directory Listing
Modified Mon Jul 25 05:39:50 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
moved these files to modellib directory


Revision 142 - Directory Listing
Modified Mon Jul 25 05:28:20 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
Merge of development branch back to main trunk on 2005-07-25


Revision 141 - Directory Listing
Modified Mon Jul 25 05:15:41 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
fixed to work with new python source/install directory structure


Revision 140 - Directory Listing
Modified Mon Jul 25 00:08:42 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
add __init__.pyc to install list


Revision 139 - Directory Listing
Modified Mon Jul 25 00:05:12 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
python init file for finley module


Revision 138 - Directory Listing
Modified Mon Jul 25 00:04:06 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
fix linking to escript/finley libraries from esys python directories


Revision 137 - Directory Listing
Modified Fri Jul 22 07:07:20 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
removed all references to modellib module


Revision 136 - Directory Listing
Modified Fri Jul 22 07:06:09 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
added modellib module


Revision 135 - Directory Listing
Modified Fri Jul 22 07:04:52 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
makefile for modellib module


Revision 134 - Directory Listing
Modified Fri Jul 22 06:28:49 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
added modellib/lib/py_src


Revision 133 - Directory Listing
Modified Fri Jul 22 06:26:05 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
removing escript/lib/py_src/modellib


Revision 132 - Directory Listing
Modified Fri Jul 22 06:23:18 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
.keep file for modellib/lib


Revision 131 - Directory Listing
Modified Fri Jul 22 06:04:55 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
removed default setting of L_PYTH_DIR, this must now be set on a module
by module basis in the respective module makefile


Revision 130 - Directory Listing
Modified Fri Jul 22 05:20:58 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
restructured python install directory


Revision 129 - Directory Listing
Modified Fri Jul 22 05:17:51 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
removed references to modellib


Revision 128 - Directory Listing
Modified Fri Jul 22 05:13:08 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
removed modellib code from escript source directory


Revision 127 - Directory Listing
Modified Fri Jul 22 05:11:29 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
moved modellib code to esys2/modellib/py_src


Revision 126 - Directory Listing
Modified Fri Jul 22 03:53:08 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
Merge of development branch back to main trunk on 2005-07-22


Revision 125 - Directory Listing
Modified Fri Jul 22 03:52:49 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
Merge of development branch back to main trunk on 2005-07-22
CVg: Committing in


Revision 124 - Directory Listing
Modified Wed Jul 20 06:14:58 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk
added ln(data) style wrapper for data.ln() - also added corresponding
implementation of Ln_Symbol class (not sure if this is right though)


Revision 123 - Directory Listing
Modified Fri Jul 8 04:08:13 2005 UTC (12 years, 5 months ago) by jgs
Original Path: trunk
Merge of development branch back to main trunk on 2005-07-08


Revision 122 - Directory Listing
Modified Thu Jun 9 05:38:05 2005 UTC (12 years, 6 months ago) by jgs
Original Path: trunk
Merge of development branch back to main trunk on 2005-06-09


Revision 121 - Directory Listing
Modified Fri May 6 04:26:16 2005 UTC (12 years, 7 months ago) by jgs
Original Path: trunk
Merge of development branch back to main trunk on 2005-05-06


Revision 120 - Directory Listing
Modified Tue Apr 12 04:46:34 2005 UTC (12 years, 8 months ago) by jgs
Original Path: trunk
Missed mk in merge back to main trunk - whoops!


Revision 119 - Directory Listing
Modified Tue Apr 12 04:45:05 2005 UTC (12 years, 8 months ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 118 - Directory Listing
Modified Tue Apr 12 04:44:55 2005 UTC (12 years, 8 months ago) by jgs
Original Path: trunk
Merge of development branch back to main trunk on 2005-04-12


Revision 117 - Directory Listing
Modified Fri Apr 1 05:48:57 2005 UTC (12 years, 8 months ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 116 - Directory Listing
Modified Fri Apr 1 05:48:48 2005 UTC (12 years, 8 months ago) by jgs
Original Path: trunk
Merge of development branch back to main trunk on 2005-04-01
CVg: Committing in .


Revision 115 - Directory Listing
Modified Fri Mar 4 07:12:47 2005 UTC (12 years, 9 months ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 114 - Directory Listing
Modified Fri Mar 4 07:12:37 2005 UTC (12 years, 9 months ago) by jgs
Original Path: trunk
Merge of development branch back to main trunk on 2005-03-04


Revision 113 - Directory Listing
Modified Mon Feb 28 07:06:33 2005 UTC (12 years, 9 months ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 112 - Directory Listing
Modified Mon Feb 28 07:06:23 2005 UTC (12 years, 9 months ago) by jgs
Original Path: trunk
Merge of development branch back to main trunk on 2005-02-28


Revision 111 - Directory Listing
Modified Mon Feb 14 05:17:48 2005 UTC (12 years, 10 months ago) by jgs
Original Path: trunk
expanded output message to indicate location of file installation


Revision 110 - Directory Listing
Modified Mon Feb 14 04:14:42 2005 UTC (12 years, 10 months ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 109 - Directory Listing
Modified Mon Feb 14 04:14:35 2005 UTC (12 years, 10 months ago) by jgs
Original Path: trunk
commit of branch dev-01 back to main trunk on 2005-02-14


Revision 108 - Directory Listing
Modified Thu Jan 27 06:21:59 2005 UTC (12 years, 10 months ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 107 - Directory Listing
Modified Thu Jan 27 06:21:48 2005 UTC (12 years, 10 months ago) by jgs
Original Path: trunk
commit of branch dev-01 back to main trunk on 2005-01-27


Revision 106 - Directory Listing
Modified Thu Dec 23 07:20:12 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 105 - Directory Listing
Modified Thu Dec 23 07:20:07 2004 UTC (12 years, 11 months ago) by jgs
Original Path: trunk
commit of dev-01 branch back to main trunk on 2004-12-23


Revision 104 - Directory Listing
Modified Fri Dec 17 07:43:12 2004 UTC (13 years ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 103 - Directory Listing
Modified Fri Dec 17 07:43:04 2004 UTC (13 years ago) by jgs
Original Path: trunk
merge of dev-01 branch back to main trunk on 2004-12-17


Revision 102 - Directory Listing
Modified Wed Dec 15 07:08:39 2004 UTC (13 years ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 101 - Directory Listing
Modified Wed Dec 15 07:08:18 2004 UTC (13 years ago) by jgs
Original Path: trunk
merging dev-01 branch to main trunk on 2004-12-15


Revision 100 - Directory Listing
Modified Wed Dec 15 03:48:48 2004 UTC (13 years ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 99 - Directory Listing
Modified Wed Dec 15 03:48:38 2004 UTC (13 years ago) by jgs
Original Path: trunk
backing out previous commit


Revision 98 - Directory Listing
Modified Wed Dec 15 03:43:28 2004 UTC (13 years ago) by jgs
Original Path: trunk
backed out previous update


Revision 97 - Directory Listing
Modified Tue Dec 14 05:39:33 2004 UTC (13 years ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 96 - Directory Listing
Modified Tue Dec 14 05:39:20 2004 UTC (13 years ago) by jgs
Original Path: trunk
merge from dev-01 branch back to main trunk on 2004-12-14


Revision 95 - Directory Listing
Modified Wed Oct 27 00:53:16 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
disabled testSubtraction test for now - requires setTaggedValue interface
which takes Data object as argument


Revision 94 - Directory Listing
Modified Wed Oct 27 00:45:54 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 93 - Directory Listing
Modified Wed Oct 27 00:42:03 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
trying to fix cvs permissions wierdness


Revision 92 - Directory Listing
Modified Wed Oct 27 00:36:38 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
readded these


Revision 91 - Directory Listing
Modified Wed Oct 27 00:34:08 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
still trying to fix cvs issue


Revision 90 - Directory Listing
Modified Wed Oct 27 00:31:36 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
removed non-boost version of setTaggedValue - breaks escript.cpp


Revision 89 - Directory Listing
Modified Wed Oct 27 00:30:36 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
fixing cvs issue


Revision 88 - Directory Listing
Modified Wed Oct 27 00:23:36 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
fixed minor syntax error


Revision 87 - Directory Listing
Modified Wed Oct 27 00:01:26 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 86 - Directory Listing
Modified Wed Oct 27 00:01:21 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
added dummy file to force CVS to keep directory in repository


Revision 85 - Directory Listing
Modified Tue Oct 26 23:56:48 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
reset default make targets


Revision 84 - Directory Listing
Modified Tue Oct 26 23:51:56 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
*** empty log message ***


Revision 83 - Directory Listing
Modified Tue Oct 26 23:51:50 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
added dummy file to ensure CVS keeps this directory in the repository


Revision 82 - Directory Listing
Modified Tue Oct 26 06:53:54 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk
Initial revision


Revision 81 - Directory Listing
Added Tue Oct 26 06:53:54 2004 UTC (13 years, 1 month ago) by (unknown author)
Original Path: trunk
New repository initialized by cvs2svn.

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