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Revision 3408 - Directory Listing
Modified Wed Dec 8 05:37:28 2010 UTC (7 years ago) by jfenwick
Merge Tony's size reducing fixes for unit tests

Revision 3401 - Directory Listing
Modified Tue Dec 7 04:57:39 2010 UTC (7 years ago) by jfenwick
Branching for release


Revision 3400 - Directory Listing
Modified Mon Dec 6 02:23:07 2010 UTC (7 years ago) by caltinay
Original Path: trunk/finley
Moved vtkCellType.h to weipa where it belongs now.


Revision 3379 - Directory Listing
Modified Wed Nov 24 04:48:49 2010 UTC (7 years ago) by gross
Original Path: trunk/finley
some clarification on lumping

Revision 3368 - Directory Listing
Modified Fri Nov 19 05:59:46 2010 UTC (7 years ago) by jfenwick
Original Path: trunk/finley
3d interpolateTable support.
New more generic interface for table interpolation.
tests and doco updated

Revision 3355 - Directory Listing
Modified Tue Nov 16 06:35:06 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/finley
Fixed building with boost < 1.40 by
- removing the saveVTK method from dudley's MeshAdapter completely
  (no point introducing it now when we are trying to get rid of it soon)
- adding a helper function to weipa's python layer which can be called from C++
  with older boost versions.



Revision 3352 - Directory Listing
Modified Tue Nov 16 03:58:09 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/finley
exposure of AMG options

Revision 3349 - Directory Listing
Modified Mon Nov 15 05:09:56 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/finley
escript now supports out-of-tree builds.
All build and test files are now created under a user-definable build_dir
directory.
This also fixes issue 291.
Removed most svn:ignore props since they are no longer required.


Revision 3346 - Directory Listing
Modified Fri Nov 12 01:19:02 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/finley
Replaced usage of esys.escript.util.saveVTK by weipa.saveVTK in all python
scripts.


Revision 3344 - Directory Listing
Modified Thu Nov 11 23:26:52 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/finley
Phew!
-escript, finley, and dudley now uses weipa's saveVTK implementation
-moved tests from finley to weipa accordingly; dudley still to do
-rebaselined all test files
-fixed a few issues in weipa.saveVTK, e.g. saving metadata without schema
-added a deprecation warning to esys.escript.util.saveVTK
-todo: change doco, tests and other places to use weipa.saveVTK



Revision 3335 - Directory Listing
Modified Wed Nov 3 05:02:57 2010 UTC (7 years, 1 month ago) by jfenwick
Original Path: trunk/finley
Fix the launcher so that it can give an environment even if buildvars is not present.
Environment now includes scons for standalone builds.
Fixes and cleanup for the install documentation.
scons TEMPLATES updated to define the optionfile version by default.

...mumble
   finley no longer imports escript into the default namespace
...

Revision 3317 - Directory Listing
Modified Thu Oct 28 00:50:41 2010 UTC (7 years, 1 month ago) by caltinay
Original Path: trunk/finley
Removed bogus mpi.h includes, replaced others by our esysUtils wrapper
and rearranged so that the wrapper always comes before netcdf which fixes
linking problems when disabling mpi on systems with netCDF 4.x.


Revision 3312 - Directory Listing
Modified Tue Oct 26 07:54:58 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/finley
last step for a clean up version of the AMG

Revision 3303 - Directory Listing
Modified Mon Oct 25 04:33:31 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/finley
more clean up work on the AMG

Revision 3290 - Directory Listing
Modified Wed Oct 20 08:31:56 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/finley
small fixes

Revision 3289 - Directory Listing
Modified Wed Oct 20 07:07:11 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/finley
missing factor fixed.

Revision 3286 - Directory Listing
Modified Tue Oct 19 00:36:27 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/finley
small memory leak fixed.

Revision 3283 - Directory Listing
Modified Mon Oct 18 22:39:28 2010 UTC (7 years, 1 month ago) by gross
Original Path: trunk/finley
AMG reengineered, BUG is Smoother fixed.



Revision 3276 - Directory Listing
Modified Thu Oct 14 21:38:05 2010 UTC (7 years, 2 months ago) by gross
Original Path: trunk/finley
new damage solver

Revision 3275 - Directory Listing
Modified Thu Oct 14 06:15:27 2010 UTC (7 years, 2 months ago) by gross
Original Path: trunk/finley
As it turns out the tangential operator implementation is not a good idea.
This a check in to save the last version of this approach before starting using a different method.



Revision 3269 - Directory Listing
Modified Wed Oct 13 03:21:50 2010 UTC (7 years, 2 months ago) by jfenwick
Original Path: trunk/finley
Fixed some intel compiler warnings.
Put linearPDEs back the way it was and present a common interface for dudley and finley (as per Lutz)


Revision 3263 - Directory Listing
Modified Tue Oct 12 01:16:21 2010 UTC (7 years, 2 months ago) by caltinay
Original Path: trunk/finley
Updated convection script to use escript DataManager.


Revision 3259 - Directory Listing
Modified Mon Oct 11 01:48:14 2010 UTC (7 years, 2 months ago) by jfenwick
Original Path: trunk/finley
Merging dudley and scons updates from branches


Revision 3200 - Directory Listing
Modified Thu Sep 23 06:53:36 2010 UTC (7 years, 2 months ago) by gross
Original Path: trunk/finley
more damage

Revision 3193 - Directory Listing
Modified Tue Sep 21 06:56:44 2010 UTC (7 years, 2 months ago) by gross
Original Path: trunk/finley
more clean up in AMG

Revision 3181 - Directory Listing
Modified Tue Sep 14 05:01:00 2010 UTC (7 years, 3 months ago) by jfenwick
Original Path: trunk/finley
Fix to buggy recovery of colouring information.
Unfortunately unable to fix buggy spelling of colour.


Revision 3177 - Directory Listing
Modified Mon Sep 13 10:30:24 2010 UTC (7 years, 3 months ago) by gross
Original Path: trunk/finley
running vresion

Revision 3175 - Directory Listing
Modified Fri Sep 10 09:03:38 2010 UTC (7 years, 3 months ago) by gross
Original Path: trunk/finley
intial checkin 

Revision 3111 - Directory Listing
Modified Thu Aug 26 06:49:42 2010 UTC (7 years, 3 months ago) by gross
Original Path: trunk/finley
some diagnostics for time step backtracing added

Revision 3097 - Directory Listing
Modified Fri Aug 20 04:59:12 2010 UTC (7 years, 3 months ago) by gross
Original Path: trunk/finley
some modifications to the GaussSeidel

Revision 3094 - Directory Listing
Modified Fri Aug 13 08:38:06 2010 UTC (7 years, 4 months ago) by gross
Original Path: trunk/finley
The MPI and sequational GAUSS_SEIDEL have been merged.
The couring and main diagonal pointer is now manged by the patternm which means that they are calculated once only even if the preconditioner is deleted.




Revision 3083 - Directory Listing
Modified Tue Aug 3 06:34:35 2010 UTC (7 years, 4 months ago) by caltinay
Original Path: trunk/finley
Updated some svn:ignore props.


Revision 3078 - Directory Listing
Modified Tue Aug 3 03:12:16 2010 UTC (7 years, 4 months ago) by jfenwick
Original Path: trunk/finley
Switched the build_dir keyword param to variant_dir.
Should fix issue 525.



Revision 3071 - Directory Listing
Modified Wed Jul 21 05:37:30 2010 UTC (7 years, 4 months ago) by gross
Original Path: trunk/finley
new darcy flux

Revision 3051 - Directory Listing
Modified Tue Jun 29 00:45:49 2010 UTC (7 years, 5 months ago) by lgao
Original Path: trunk/finley
Hybrid MPI/OpenMP versioned Gauss_Seidel preconditioner is added. 
To use it, use "SolverOptions.GAUSS_SEIDEL_MPI" in python script. 



Revision 3046 - Directory Listing
Modified Tue Jun 22 08:01:55 2010 UTC (7 years, 5 months ago) by gross
Original Path: trunk/finley
some examples for a simple subduction model

Revision 3044 - Directory Listing
Modified Fri Jun 18 04:48:47 2010 UTC (7 years, 6 months ago) by artak
Original Path: trunk/finley
Put back

Revision 3043 - Directory Listing
Modified Fri Jun 18 04:45:14 2010 UTC (7 years, 6 months ago) by artak
Original Path: trunk/finley
Problem with latest MKL should be fixed now. The problem was solving unrolled block matrix with MKL.

Revision 3033 - Directory Listing
Modified Wed Jun 2 10:17:00 2010 UTC (7 years, 6 months ago) by gross
Original Path: trunk/finley
fix for overflow

Revision 3028 - Directory Listing
Modified Thu May 13 03:41:27 2010 UTC (7 years, 7 months ago) by gross
Original Path: trunk/finley
a new test problem (doesn't use unit testing)

Revision 3027 - Directory Listing
Modified Wed May 12 05:26:09 2010 UTC (7 years, 7 months ago) by gross
Original Path: trunk/finley
some little fixes in an old script

Revision 2999 - Directory Listing
Modified Fri Mar 26 00:00:39 2010 UTC (7 years, 8 months ago) by artak
Original Path: trunk/finley
NE set to 10 elemennt, because 6 is too small for mpi=8 job.

Revision 2991 - Directory Listing
Modified Mon Mar 22 05:42:48 2010 UTC (7 years, 8 months ago) by gross
Original Path: trunk/finley
isub as private added

Revision 2990 - Directory Listing
Modified Fri Mar 19 05:57:22 2010 UTC (7 years, 8 months ago) by gross
Original Path: trunk/finley
some prints removed.

Revision 2989 - Directory Listing
Modified Thu Mar 18 01:45:55 2010 UTC (7 years, 9 months ago) by gross
Original Path: trunk/finley
- bug in error handling in the case of lumped mass matrix fixed.
- switched back to rowsum lumping as there are problems with HRZ lumping for order 2 



Revision 2988 - Directory Listing
Modified Tue Mar 16 06:14:30 2010 UTC (7 years, 9 months ago) by gross
Original Path: trunk/finley
C-level lumping switched on

Revision 2987 - Directory Listing
Modified Tue Mar 16 01:32:43 2010 UTC (7 years, 9 months ago) by gross
Original Path: trunk/finley
FCT solver rewritten

Revision 2960 - Directory Listing
Modified Tue Mar 2 07:54:11 2010 UTC (7 years, 9 months ago) by gross
Original Path: trunk/finley
new DarcyFlux solver

Revision 2940 - Directory Listing
Modified Fri Feb 19 00:38:45 2010 UTC (7 years, 9 months ago) by caltinay
Original Path: trunk/finley
Minor potential optimization: prefer empty() over size()==0.


Revision 2934 - Directory Listing
Modified Fri Feb 12 05:09:06 2010 UTC (7 years, 10 months ago) by gross
Original Path: trunk/finley
gmsh reader supports second order recs and hex now

Revision 2898 - Directory Listing
Modified Mon Feb 1 01:23:46 2010 UTC (7 years, 10 months ago) by caltinay
Original Path: trunk/finley
Reverted the move of system_dep.h since it didn't solve the problem nicely.
Created a wrapper class for the needed functionality instead.


Revision 2897 - Directory Listing
Modified Mon Feb 1 01:22:50 2010 UTC (7 years, 10 months ago) by lgao
Original Path: trunk/finley
Fix the Parmetis problem related with Mantis issue 0000480. 
In case there is any node with no vertex, Parmetis will not
be used and a message will be printed. 




Revision 2895 - Directory Listing
Modified Fri Jan 29 04:58:16 2010 UTC (7 years, 10 months ago) by caltinay
Original Path: trunk/finley
Moved finley's system_dep.h file up to the C level to be able to export two
functions that are used by the dataexporter. Changed include paths and C++
style comments accordingly.


Revision 2881 - Directory Listing
Modified Thu Jan 28 02:03:15 2010 UTC (7 years, 10 months ago) by jfenwick
Original Path: trunk/finley
Don't panic.
Updating copyright stamps


Revision 2867 - Directory Listing
Modified Fri Jan 22 06:28:02 2010 UTC (7 years, 10 months ago) by gross
Original Path: trunk/finley
now option -i is used if no script is given

Revision 2862 - Directory Listing
Modified Thu Jan 21 04:45:39 2010 UTC (7 years, 10 months ago) by gross
Original Path: trunk/finley
more review in the cookbook

Revision 2857 - Directory Listing
Modified Mon Jan 18 07:44:42 2010 UTC (7 years, 10 months ago) by gross
Original Path: trunk/finley
test for ApproximationOrder added and Transport type problem now choose reduced when necessary only.

Revision 2856 - Directory Listing
Modified Mon Jan 18 04:14:37 2010 UTC (7 years, 10 months ago) by gross
Original Path: trunk/finley
FunctionSpaces provide now some information about their approximation order.

Revision 2850 - Directory Listing
Modified Fri Jan 15 07:14:25 2010 UTC (7 years, 11 months ago) by gross
Original Path: trunk/finley
the powerlaw is working again. tests are switched on again.

Revision 2843 - Directory Listing
Modified Thu Jan 14 05:51:28 2010 UTC (7 years, 11 months ago) by gross
Original Path: trunk/finley
new compressible solver

Revision 2842 - Directory Listing
Modified Thu Jan 14 05:42:02 2010 UTC (7 years, 11 months ago) by caltinay
Original Path: trunk/finley
Changed domain::dump() to write out NodeDistribution & DofDistribution even if
the current process has 0 nodes.


Revision 2841 - Directory Listing
Modified Thu Jan 14 01:02:56 2010 UTC (7 years, 11 months ago) by jfenwick
Original Path: trunk/finley
Unit tests for 2838 and adding setTags variant which takes a string instead of a tag num.



Revision 2828 - Directory Listing
Modified Tue Dec 22 01:24:40 2009 UTC (7 years, 11 months ago) by artak
Original Path: trunk/finley
Smoother for AMG now can be selected from python. Now only Jacobi and Gauss-Seidel are available as smoothers.

Revision 2816 - Directory Listing
Modified Thu Dec 10 02:09:43 2009 UTC (8 years ago) by artak
Original Path: trunk/finley
Standard coarsening is added to options list.

Revision 2814 - Directory Listing
Modified Tue Dec 8 01:50:29 2009 UTC (8 years ago) by caltinay
Original Path: trunk/finley
Removed minor code duplication.


Revision 2799 - Directory Listing
Modified Thu Dec 3 01:35:08 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/finley
resolveGroup function added to python.
Unit tests for resolveGroup, resolve and delay.

Revision 2794 - Directory Listing
Modified Wed Dec 2 00:43:17 2009 UTC (8 years ago) by gross
Original Path: trunk/finley
returning to the older version.

Revision 2793 - Directory Listing
Modified Tue Dec 1 06:10:10 2009 UTC (8 years ago) by gross
Original Path: trunk/finley
some new util functions

Revision 2779 - Directory Listing
Modified Thu Nov 26 03:51:15 2009 UTC (8 years ago) by caltinay
Original Path: trunk/finley
Fixed more instances of garbage=cstring+integer errors (d'oh!)


Revision 2778 - Directory Listing
Modified Thu Nov 26 01:50:30 2009 UTC (8 years ago) by caltinay
Original Path: trunk/finley
Fixed unintended pointer arithmetic with c-strings in MeshAdapter::dump() and
shortened error messages while being at it.


Revision 2770 - Directory Listing
Modified Wed Nov 25 01:24:51 2009 UTC (8 years ago) by jfenwick
Original Path: trunk/finley
Removed buffer implementation of Lazy.
Removed supporting Alloc/Free Sample buffer calls.

Revision 2760 - Directory Listing
Modified Thu Nov 19 05:22:45 2009 UTC (8 years ago) by artak
Original Path: trunk/finley
The first version of the new AMG preconditioner. It need a lot of polishing for efficiency. Old AMG now called AMLI preconditioner.

Revision 2756 - Directory Listing
Modified Thu Nov 19 00:40:02 2009 UTC (8 years ago) by gross
Original Path: trunk/finley
missing file added.

Revision 2755 - Directory Listing
Modified Wed Nov 18 23:19:32 2009 UTC (8 years ago) by caltinay
Original Path: trunk/finley
Reverted changes to Mesh_read from last commit. They break compilation with
MPI and seem unintentional.


Revision 2754 - Directory Listing
Modified Wed Nov 18 07:44:26 2009 UTC (8 years ago) by gross
Original Path: trunk/finley
tests for macro elements in saveVTK added.

Revision 2752 - Directory Listing
Modified Wed Nov 18 06:01:18 2009 UTC (8 years ago) by caltinay
Original Path: trunk/finley
Fixed compilation error in mesh reader when using MPI.


Revision 2751 - Directory Listing
Modified Wed Nov 18 00:30:47 2009 UTC (8 years ago) by caltinay
Original Path: trunk/finley
Removed stray forward declaration.


Revision 2750 - Directory Listing
Modified Tue Nov 17 23:39:20 2009 UTC (8 years ago) by caltinay
Original Path: trunk/finley
Fixed some compilation errors with OpenMP introduced in last commit.


Revision 2749 - Directory Listing
Modified Tue Nov 17 07:34:16 2009 UTC (8 years, 1 month ago) by gross
Original Path: trunk/finley
missing files.

Revision 2748 - Directory Listing
Modified Tue Nov 17 07:32:59 2009 UTC (8 years, 1 month ago) by gross
Original Path: trunk/finley
Macro elements are implemented now. VTK writer for macro elements still needs testing.

Revision 2744 - Directory Listing
Modified Mon Nov 16 23:45:55 2009 UTC (8 years, 1 month ago) by caltinay
Original Path: trunk/finley
SaveVTK: exponent could have 3 digits so reserve enough space.


Revision 2743 - Directory Listing
Modified Mon Nov 16 05:28:47 2009 UTC (8 years, 1 month ago) by caltinay
Original Path: trunk/finley
Corrected memory allocation size for tensors in saveVTK. Fixes issue 460.


Revision 2742 - Directory Listing
Modified Thu Nov 12 06:03:37 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/finley
Merging changes from the lapack branch.

The inverse() operation has been moved into c++. [No lazy support for this operation yet.]
Optional Lapack support has been added for matrices larger than 3x3. 
service0 is set to use mkl_lapack.




Revision 2732 - Directory Listing
Modified Mon Oct 26 01:11:31 2009 UTC (8 years, 1 month ago) by jfenwick
Original Path: trunk/finley
Fixed segfault in debug+omp tests.
Cause:
  variable used in parallel section not declared shared.



Revision 2730 - Directory Listing
Modified Thu Oct 22 01:50:27 2009 UTC (8 years, 1 month ago) by artak
Original Path: trunk/finley
order member variable added to the tests.

Revision 2725 - Directory Listing
Modified Wed Oct 21 23:44:06 2009 UTC (8 years, 1 month ago) by artak
Original Path: trunk/finley
AMG unit tests are disabled for 2-nd order elements.

Revision 2722 - Directory Listing
Modified Fri Oct 16 06:45:01 2009 UTC (8 years, 2 months ago) by gross
Original Path: trunk/finley
First steps towards macro elements. at the monent a  macro element is identical to its counterpart of 2nd order.





Revision 2719 - Directory Listing
Modified Wed Oct 14 06:38:03 2009 UTC (8 years, 2 months ago) by gross
Original Path: trunk/finley
a new Stokes solver added

Revision 2717 - Directory Listing
Modified Wed Oct 14 03:41:20 2009 UTC (8 years, 2 months ago) by gross
Original Path: trunk/finley
implements https://mantis.esscc.uq.edu.au/view.php?id=426

Revision 2676 - Directory Listing
Modified Mon Sep 21 08:06:37 2009 UTC (8 years, 2 months ago) by gross
Original Path: trunk/finley
FaultSystem: MaxValue and MinValue return now a Locator. This makes it possible to extract values of from other data objects at the location of the min/max value

Revision 2675 - Directory Listing
Modified Mon Sep 21 02:32:17 2009 UTC (8 years, 2 months ago) by gross
Original Path: trunk/finley
getMinValue added to the fault system.

Revision 2663 - Directory Listing
Modified Tue Sep 15 06:04:44 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/finley
finally there is a 3D version for the fault system class

Revision 2654 - Directory Listing
Modified Tue Sep 8 07:11:12 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/finley
2D fault systems are now working. 3D still needs work.

Revision 2653 - Directory Listing
Modified Tue Sep 8 04:26:30 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/finley
Fix bug in maxGlobalDataPoint and minGlobalDataPoint.
They now give the correct answers and the datapoint ids returned are globally
correct.

Removed some #defines from before COW
Removed hasNoSamples() - I don't trust myself to use that properly let alone anybody else.



Revision 2647 - Directory Listing
Modified Fri Sep 4 05:25:25 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/finley
fault system add. There is still an example for the usage missing.

Revision 2646 - Directory Listing
Modified Fri Sep 4 00:13:00 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/finley
Unit tests and user doco for interpolation and saveCSV

Revision 2644 - Directory Listing
Modified Wed Sep 2 04:14:03 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/finley
Add unit tests for saveDataCSV which should be ready for use now.
Keyword args are now output in sorted order.

Removed some unneeded functions.

Revision 2642 - Directory Listing
Modified Tue Sep 1 04:15:50 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/finley
pre cleanup

Revision 2641 - Directory Listing
Modified Mon Aug 31 07:41:49 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/finley
Fixed some of my stupids related to MPI compile errors.


Revision 2640 - Directory Listing
Modified Mon Aug 31 06:22:10 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/finley
Adding getMPIComm


Revision 2635 - Directory Listing
Modified Thu Aug 27 04:54:41 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/finley
A bunch of changes related to saveDataCSV.
[Not completed or unit tested yet]

Added saveDataCSV to util.py
AbstractDomain (and MeshAdapter) have a commonFunctionSpace method to 
take a group of FunctionSpaces and return something they can all be interpolated to.

Added pointToStream() in DataTypes to help print points.

added actsConstant() to data - required because DataConstant doesn't store samples the same way other Data do.

Revision 2628 - Directory Listing
Modified Tue Aug 25 03:50:00 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/finley
Fixed linkage on getTestDomainFunctionSpace.

added Data.interpolateTable to perform 2D interpolation.
It needs better unit tests though.

Revision 2627 - Directory Listing
Modified Mon Aug 24 01:57:34 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/finley
some bugs in pycad fixed.


Revision 2625 - Directory Listing
Modified Fri Aug 21 06:30:25 2009 UTC (8 years, 3 months ago) by jfenwick
Original Path: trunk/finley
Merging changes from new doco branch.
All docstrings are now in reStructured text.
A few email addresses have been fixes as well.

Revision 2620 - Directory Listing
Modified Thu Aug 20 06:24:00 2009 UTC (8 years, 3 months ago) by gross
Original Path: trunk/finley
some small additions to pycad to make life a bit easier.

Revision 2608 - Directory Listing
Modified Tue Aug 18 01:25:18 2009 UTC (8 years, 4 months ago) by jfenwick
Original Path: trunk/finley
Updating Lutz' email


Revision 2596 - Directory Listing
Modified Thu Aug 6 03:09:03 2009 UTC (8 years, 4 months ago) by lgao
Original Path: trunk/finley
Add new diagnostic information: "net time" (the execution time of solver, excluding the setup time for solver and the execution time of preconditioner)



Revision 2595 - Directory Listing
Modified Thu Aug 6 00:49:09 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/finley
there was wrong test which triggered an excpetion in some cases where things were actually right

Revision 2564 - Directory Listing
Modified Tue Jul 28 04:46:38 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/finley
reduced PDE solutions added to topography

Revision 2563 - Directory Listing
Modified Tue Jul 28 03:50:45 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/finley
reengineered version of the mountain class so it becomes easier to use for the convection code

Revision 2561 - Directory Listing
Modified Mon Jul 27 07:38:45 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/finley
small bug in the calculation of the errors fixed.

Revision 2554 - Directory Listing
Modified Fri Jul 24 05:38:54 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/finley
bug with MKL call fixed.

Revision 2551 - Directory Listing
Modified Thu Jul 23 09:19:15 2009 UTC (8 years, 4 months ago) by gross
Original Path: trunk/finley
a problem with the sparse matrix unrolling fixed.

Revision 2549 - Directory Listing
Modified Mon Jul 20 06:43:47 2009 UTC (8 years, 4 months ago) by jfenwick
Original Path: trunk/finley
Remainder of copyright date fixes

Revision 2548 - Directory Listing
Modified Mon Jul 20 06:20:06 2009 UTC (8 years, 4 months ago) by jfenwick
Original Path: trunk/finley
Updating copyright notices

Revision 2534 - Directory Listing
Modified Thu Jul 16 06:49:19 2009 UTC (8 years, 5 months ago) by caltinay
Original Path: trunk/finley
Changed examples, tests and tutorials to save VTK files as .vtu instead .xml.
Visit doesn't know what to do with xml's and vtu is the proper extension
anyway.


Revision 2533 - Directory Listing
Modified Wed Jul 15 05:57:01 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/finley
finley delivers now a status identifier of the mesh.

Revision 2524 - Directory Listing
Modified Wed Jul 8 00:39:26 2009 UTC (8 years, 5 months ago) by artak
Original Path: trunk/finley
Minimum size of the coarsest level matrix option added to solver options

Revision 2521 - Directory Listing
Modified Tue Jul 7 00:08:58 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/finley
Modified Lazy so that resolving a single sample uses the node cache method.
Fixed some doxygen problems.

Revision 2519 - Directory Listing
Modified Mon Jul 6 00:43:08 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/finley
Correcting some doxygen errors

Revision 2518 - Directory Listing
Modified Fri Jul 3 07:43:11 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/finley
bug in setNewX fixed: now it is made sure that the FunctionSpace of the new coordinates is correct.

Revision 2511 - Directory Listing
Modified Thu Jul 2 05:16:19 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/finley
more openmp

Revision 2502 - Directory Listing
Modified Tue Jun 30 05:49:22 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/finley
tests for examples added. utest is not working yet.

Revision 2487 - Directory Listing
Modified Tue Jun 23 04:26:07 2009 UTC (8 years, 5 months ago) by jfenwick
Original Path: trunk/finley
Fixed const-ness on some return values.
Null-Domain now reports tag one as being in use.

Revision 2484 - Directory Listing
Modified Mon Jun 22 04:22:19 2009 UTC (8 years, 5 months ago) by gross
Original Path: trunk/finley
numarray removed from docu; Locator revised.

Revision 2474 - Directory Listing
Modified Tue Jun 16 06:32:15 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/finley
linearPDEs has is now using the SolverOptions class to talk to PASO

Revision 2468 - Directory Listing
Modified Thu Jun 11 02:55:51 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/finley
some more work toward numpy

Revision 2455 - Directory Listing
Modified Wed Jun 3 03:29:07 2009 UTC (8 years, 6 months ago) by jfenwick
Original Path: trunk/finley
Merging changes from numpy branch.


Revision 2445 - Directory Listing
Modified Fri May 29 03:23:25 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/finley
some improvement on convection which ios now working again

Revision 2440 - Directory Listing
Modified Wed May 27 08:45:55 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/finley
convection works now again.

Revision 2438 - Directory Listing
Modified Tue May 26 02:26:52 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/finley
new version of power law (blame Hans)

Revision 2432 - Directory Listing
Modified Wed May 20 06:06:20 2009 UTC (8 years, 6 months ago) by gross
Original Path: trunk/finley
power law and incompressible flow is running now

Revision 2425 - Directory Listing
Modified Thu May 14 09:06:35 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/finley
bug in getListOfTags fixed and some tested added

Revision 2422 - Directory Listing
Modified Thu May 14 03:17:28 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/finley
bug in testing saveVTK fixed

Revision 2421 - Directory Listing
Modified Thu May 14 02:29:06 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/finley
vtk writer supports now meta data and meta data schema

Revision 2419 - Directory Listing
Modified Thu May 14 01:56:18 2009 UTC (8 years, 7 months ago) by jfenwick
Original Path: trunk/finley
Use os.path.join instead of os.sep in tests
If you can read this message it means svn commit mails are working again.
... Or you are looking at the logs

Revision 2416 - Directory Listing
Modified Wed May 13 06:03:59 2009 UTC (8 years, 7 months ago) by gross
Original Path: trunk/finley
* fix Windows MPI case: export system variables
* define ESCRIPT_NUM_PROC and ESCRIPT_NUM_NODES
* cleanup using os.path.join()

Revision 2389 - Directory Listing
Modified Wed Apr 15 06:46:01 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/finley
some minor fixes.

Revision 2386 - Directory Listing
Modified Wed Apr 15 03:54:25 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/finley
some minor fixes

Revision 2385 - Directory Listing
Modified Wed Apr 15 03:52:38 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/finley
two fixes dealing with zero samples under MPI

Revision 2379 - Directory Listing
Modified Thu Apr 9 07:36:55 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/finley
type fixed.

Revision 2368 - Directory Listing
Modified Mon Apr 6 05:05:35 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/finley
some fixes for MKL and Mpisize>1

Revision 2358 - Directory Listing
Modified Wed Apr 1 22:25:24 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/finley
mpi is not really ready yet.

Revision 2344 - Directory Listing
Modified Mon Mar 30 02:13:58 2009 UTC (8 years, 8 months ago) by jfenwick
Original Path: trunk/finley
Change __url__ to launchpad site


Revision 2337 - Directory Listing
Modified Thu Mar 26 07:07:42 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/finley
Transport class uses now useBackwardEuler rather than the mysterious theta.

Revision 2330 - Directory Listing
Modified Mon Mar 23 01:18:03 2009 UTC (8 years, 8 months ago) by artak
Original Path: trunk/finley
RILU changed to Jacobi in accordance with mantis bug reported a while ago

Revision 2325 - Directory Listing
Modified Thu Mar 19 05:32:13 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/finley
tests for Lame equation added.

Revision 2323 - Directory Listing
Modified Thu Mar 19 04:23:32 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/finley
test for Helmholtz added

Revision 2322 - Directory Listing
Modified Thu Mar 19 04:13:21 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/finley
ops

Revision 2320 - Directory Listing
Modified Thu Mar 19 03:40:16 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/finley
some modifictaions to make sure that Mesh_merge.c Mesh_glueFaces.c Mesh_joinFaces.c reject to work under MPI

Revision 2319 - Directory Listing
Modified Thu Mar 19 03:19:41 2009 UTC (8 years, 8 months ago) by gross
Original Path: trunk/finley
some more work on tests on MPI

Revision 2315 - Directory Listing
Modified Wed Mar 18 00:38:48 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/finley
fixes for MPI

Revision 2311 - Directory Listing
Modified Mon Mar 16 23:00:08 2009 UTC (8 years, 9 months ago) by jfenwick
Original Path: trunk/finley
Fixed a bug causing Mac crashes.


Revision 2310 - Directory Listing
Modified Mon Mar 16 04:07:43 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/finley
some modifications to the test to fix a problem cased by reordering in MPI



Revision 2308 - Directory Listing
Modified Mon Mar 16 01:20:56 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/finley
size_t may be 64 bits which is incompatible to MPI_INT. This problem is fixed by inserting a cast in Mesh_read.c. 
Moreover a fix has been added making sure that gmsh and triangle are executed on one processor only.




Revision 2301 - Directory Listing
Modified Thu Mar 12 01:35:26 2009 UTC (8 years, 9 months ago) by gross
Original Path: trunk/finley
test for power law added

Revision 2271 - Directory Listing
Modified Mon Feb 16 05:08:29 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/finley
Merging version 2269 to trunk


Revision 2264 - Directory Listing
Modified Wed Feb 11 06:48:28 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/finley
a new darcy flux solver.

Revision 2257 - Directory Listing
Modified Mon Feb 9 07:06:00 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/finley
test can now deal with contact elements

Revision 2256 - Directory Listing
Modified Mon Feb 9 06:20:32 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/finley
Throw an exception if AbstractDomain::MPIBarrier is called (This shouldn't happen).
Added Barrier to saveVTK.
Replaced some misused keywords.


Revision 2251 - Directory Listing
Modified Fri Feb 6 06:50:39 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/finley
new compressible flow solver

Revision 2249 - Directory Listing
Modified Fri Feb 6 00:11:51 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/finley
Fixed some pathing issues.


Revision 2243 - Directory Listing
Modified Wed Feb 4 05:22:28 2009 UTC (8 years, 10 months ago) by gross
Original Path: trunk/finley
small bug fixed which could lead to a seg fault

Revision 2242 - Directory Listing
Modified Wed Feb 4 05:04:20 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/finley
Development continues on unit test framework


Revision 2239 - Directory Listing
Modified Wed Feb 4 00:42:46 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/finley
Added pyvisi and c++ unit tests to build of utest.sh

Revision 2235 - Directory Listing
Modified Tue Feb 3 01:47:47 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/finley
Added support for generating non-scons test scripts

Revision 2234 - Directory Listing
Modified Mon Feb 2 05:30:30 2009 UTC (8 years, 10 months ago) by artak
Original Path: trunk/finley
two new tests for Mountains class are added.

Revision 2231 - Directory Listing
Modified Fri Jan 30 05:16:05 2009 UTC (8 years, 10 months ago) by jfenwick
Original Path: trunk/finley
Modified scons files to compile c++ unit tests with the same options used to compile the libraries.


Revision 2208 - Directory Listing
Modified Mon Jan 12 06:37:07 2009 UTC (8 years, 11 months ago) by gross
Original Path: trunk/finley
more work on the dary solver 



Revision 2199 - Directory Listing
Modified Thu Jan 8 06:10:52 2009 UTC (8 years, 11 months ago) by jfenwick
Original Path: trunk/finley
Misc fixes:
Added some svn:ignore properties for output files that were cluttering things up.

Lazy fixes:
Fixed shape calculations for TRACE and TRANSPOSE for rank>2.
Adjusted unit test accordingly.

As a Temporary change to DataC.cpp to test for lazy data in DataC's expanded check.
This is wrong but would only affect people using lazy data.
The proper fix will come when the numarray removal code moves over from the branch.

Made tensor product AUTOLAZY capable.
Fixed some bugs resolving tensor products (incorrect offsets in buffers).
Macro'd some stray couts.

- It appears that AUTOLAZY now passes all unit tests.
- It will not be _really_ safe for general use until I can add COW. 
- (Everything's better with COW)

Revision 2197 - Directory Listing
Modified Thu Jan 8 05:49:16 2009 UTC (8 years, 11 months ago) by gross
Original Path: trunk/finley
modifications to the way cosntraints are handeled in the Transport problem



Revision 2189 - Directory Listing
Modified Tue Dec 23 04:24:37 2008 UTC (8 years, 11 months ago) by caltinay
Original Path: trunk/finley
Changed generate_dumps script to use saveESD().



Revision 2180 - Directory Listing
Modified Thu Dec 18 00:30:25 2008 UTC (8 years, 11 months ago) by caltinay
Original Path: trunk/finley
Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 3).
With boost 1.37 all epydoc warnings are gone now.
This commit should be a no-op.


Revision 2172 - Directory Listing
Modified Wed Dec 17 08:30:12 2008 UTC (9 years ago) by phornby
Original Path: trunk/finley
Fixed some signed/unsigned comparisons occurin g via MAX(). 
They were harmless anyway.

Revision 2156 - Directory Listing
Modified Mon Dec 15 05:09:02 2008 UTC (9 years ago) by gross
Original Path: trunk/finley
some modifications to the iterative solver to make them easier to use. 
There are also improved versions of the Darcy flux solver and the incompressible solver.



Revision 2151 - Directory Listing
Modified Wed Dec 10 06:34:25 2008 UTC (9 years ago) by caltinay
Original Path: trunk/finley
Moved common functionality from saveDX/VTK into private method. May be used
for future save* methods.


Revision 2150 - Directory Listing
Modified Wed Dec 10 05:57:12 2008 UTC (9 years ago) by caltinay
Original Path: trunk/finley
Removed unnecessary "magic name length".


Revision 2149 - Directory Listing
Modified Wed Dec 10 05:08:17 2008 UTC (9 years ago) by caltinay
Original Path: trunk/finley
Fixed a typo in error message.


Revision 2141 - Directory Listing
Modified Tue Dec 9 04:32:32 2008 UTC (9 years ago) by caltinay
Original Path: trunk/finley
saveVTK: Reviewed and changed parts of this function due to several issues.
Confirmed that it's still working using finley/test/python/generate_dumps.py
(manually inserted saveVTK) with and without MPI on 1 and 4 processors.

Changes include:
- removed unnecessary USE_VTK check - we are not using any VTK functions
- fixed writing of Rec9 & Hex27 connectivity data in MPI mode
- fixed some cases where the file was not closed and memory was not freed
- replaced many instances of fprintf by fputs (simple strings)
- some minor optimizations by moving or initializing variables and combining
  if-clauses
- got rid of ~300 lines of code and switched to consistent indentation making
  the file a bit better readable



Revision 2100 - Directory Listing
Modified Wed Nov 26 08:13:00 2008 UTC (9 years ago) by gross
Original Path: trunk/finley
This commit cleans up the incompressible solver and adds a DarcyFlux solver in model module. 
Some documentation for both classes has been added.
The convection code is only linear at the moment.




Revision 2094 - Directory Listing
Modified Tue Nov 25 05:45:41 2008 UTC (9 years ago) by caltinay
Original Path: trunk/finley
saveVTK: Close the file even if error is set upon completion. Note that
in some places the function still returns without proper clean up but
this won't be fixed until the rewrite to avoid more mess in the code.


Revision 2087 - Directory Listing
Modified Mon Nov 24 04:51:30 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/finley
Addressing mantis issue #221.
Interpolation.. and probeInterpolation.. now "work" for the NullDomain.
Work means throw a descriptive exception if you try to move into or out 
of the NullDomain.
The bad_cast exception related to this has been fixed.



Revision 2078 - Directory Listing
Modified Thu Nov 20 16:10:10 2008 UTC (9 years ago) by phornby
Original Path: trunk/finley
Two changes.

1. Move blocktimer from escript to esysUtils.
2. Make it possible to link to paso as a DLL or .so.

Should have no effect on 'nix's

In respect of 1., blocktimer had begun to spring up everywhere, so
for the moment I thought it best to move it to the only other library that
pops up all over the place.

In respect of 2., paso needed to be a DLL in order to use the windows intelc /fast
option, which does aggressive multi-file optimisations. Even in its current form, it either
vectorises or parallelises  hundreds more loops in the esys system than appear in the pragmas.

In achieving 2. I have not been too delicate in adding

PASO_DLL_API

declarations to the .h files in paso/src. Only toward the end of the process of
the conversion, when the number of linker errors dropped below 20, say, did I choosy about what
functions in a header I declared PASO_DLL_API. As a result, there are likely to be many routines
declared as external functions symbols that are in fact internal to the paso DLL. 
Why is this an issue?  It prevents the intelc compiler from getting aggressive on the paso module.
With pain there is sometimes gain. At least all the DLL rules in windows give good
(non-microsoft) compiler writers a chance to really shine.

So, if you should see a PASO_DLL_API on a function in a paso header file,
and think to yourself, "that function is only called in paso, why export it?", then feel free to
delete the PASO_DLL_API export declaration.

Here's hoping for no breakage.....

Revision 2076 - Directory Listing
Modified Thu Nov 20 12:34:17 2008 UTC (9 years ago) by phornby
Original Path: trunk/finley

I may get into trouble for this.
boost-python 1.34 does have a docstring_options class,
but does not have a 3 argument constructor for
it. So the test has been modified to 


#if ((BOOST_VERSION/100)%1000 > 34) || (BOOST_VERSION/100000 >1)

If you wish to make things more delicate, one can define a 2 argument construction
of docopt just for 1.34 (with an #elif). Probably not worth the effort frankly.

Hope that this has not broken anything for anyone else. The SVN logs suggest this is a
little fragile.....

Also, please be aware that much of our chemistry interface code, that we wish to use with
escript, makes extensive use of boost python.
Having two different boost versions mucking with the python interpreter sounds
like a really bad idea, I'm sure you'll agree.
The problem is that it is not a simple task for us to build new versions of boost-python
on all our platforms. Consequently, it would be nice to be informed when you guys
intend to upgrade a support library of this nature so that we can plan and allocate
resources to keep up.

Cheers.



Revision 2069 - Directory Listing
Modified Thu Nov 20 09:13:19 2008 UTC (9 years ago) by phornby
Original Path: trunk/finley
Another ElementTypeId TypeId=NoType; fix.

Revision 2064 - Directory Listing
Modified Thu Nov 20 04:06:34 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/finley
docstring_options was added in boost 1.34 - macro'd it out if you are 
compiling earlier than that.


Revision 2061 - Directory Listing
Modified Wed Nov 19 03:40:21 2008 UTC (9 years ago) by jfenwick
Original Path: trunk/finley
Fixing some warnings from epydoc.
Disabled c++ signatures in python docstrings.
Removed references to Bruce in epydoc and the users guide.

Revision 2059 - Directory Listing
Modified Mon Nov 17 22:57:50 2008 UTC (9 years ago) by gross
Original Path: trunk/finley
changes as suggested by phornby

Revision 2052 - Directory Listing
Modified Mon Nov 17 11:15:07 2008 UTC (9 years ago) by phornby
Original Path: trunk/finley
MALLOC_CHUNK -> malloc_chunk in case there is a name-space
collision with a macro at some time in the future.



Revision 2041 - Directory Listing
Modified Sat Nov 15 12:45:15 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
ESYS_STATIC_LIB no longer needs to be defined in SConscript files.

Revision 2034 - Directory Listing
Modified Thu Nov 13 03:03:42 2008 UTC (9 years, 1 month ago) by artak
Original Path: trunk/finley
variable <set> is initilized to get rid of compiler warnning errors. finley/src/Quadrature.c

Revision 2033 - Directory Listing
Modified Wed Nov 12 08:14:11 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
As in the last message, add an extra CPPDEFINE to py_local_wrapper_env



Revision 2031 - Directory Listing
Modified Wed Nov 12 08:02:33 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
Need finer control than INTERFACE_STATIC_LIB could exert. Now there is a
XXX_STATIC_LIB for each lib.



Revision 2030 - Directory Listing
Modified Wed Nov 12 07:34:08 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
Fix the undef'fing of _DLL_API in windows case.



Revision 2029 - Directory Listing
Modified Wed Nov 12 07:27:05 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
Test a more elegant way of handling XXX_DLL_API macros.



Revision 2027 - Directory Listing
Modified Tue Nov 11 02:52:24 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
Ensure ESCRIPT_EXPORTS is defined only while compiling escript on windows.
A similar comment applies to FINLEY_EXPORTS.

SConstruct:
Fixed a comment.
reformatted the Export() call, and added IS_WINDOWS_PLATFORM to the exports.

Revision 2025 - Directory Listing
Modified Tue Nov 11 00:18:33 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/finley
__const on some strings

Revision 2019 - Directory Listing
Modified Mon Nov 10 13:49:00 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
Yet another concerted effort to handle missing macro arguments
in a portable way.



Revision 2018 - Directory Listing
Modified Mon Nov 10 13:31:43 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
Only import mathimf.h on win32 with intelc. Allow others to use the
standard math.h

change the #ifndef const -> #ifndef __const (oops!!)



Revision 2006 - Directory Listing
Modified Mon Nov 10 03:07:08 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/finley
Updating svn:ignore properties.


Revision 1991 - Directory Listing
Modified Fri Nov 7 04:32:38 2008 UTC (9 years, 1 month ago) by caltinay
Original Path: trunk/finley
finley: Constify two variables.


Revision 1990 - Directory Listing
Modified Fri Nov 7 04:19:07 2008 UTC (9 years, 1 month ago) by ksteube
Original Path: trunk/finley
Changes to avoid compiler warnings
Finley files now pass -Wall on gcc 4.3.2
	saveVTK.c: replaced printf(string) with printf("%s", string)
	MeshAdapterFactory.cpp: moved a few lines to avoid possible use of uninitialized vars
	MeshAdapter.cpp: initialized ncdims in mesh dump
There is still a warning from a boost include file


Revision 1986 - Directory Listing
Modified Thu Nov 6 23:33:14 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/finley
Warning removal

Revision 1985 - Directory Listing
Modified Thu Nov 6 22:13:54 2008 UTC (9 years, 1 month ago) by caltinay
Original Path: trunk/finley
finley: Fixed compiler warnings (uninitialized vars). This is only a temporary hack. At a later stage this beast will be rewritten...


Revision 1981 - Directory Listing
Modified Thu Nov 6 05:27:33 2008 UTC (9 years, 1 month ago) by jfenwick
Original Path: trunk/finley
More warning removal.


Revision 1965 - Directory Listing
Modified Wed Nov 5 03:24:09 2008 UTC (9 years, 1 month ago) by caltinay
Original Path: trunk/finley
Fixed working directory of the seismic_wave example.


Revision 1942 - Directory Listing
Modified Wed Oct 29 03:29:35 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
remove unused rtmp var.

Revision 1937 - Directory Listing
Modified Tue Oct 28 01:26:55 2008 UTC (9 years, 1 month ago) by ksteube
Original Path: trunk/finley
Created a mid-sized test suite 'scalable_tests' as an alternative to 'all_tests'.
These run on small-ish systems and also on all 512 cores of Savanna.
Most features are covered, but it's better to use 'all_tests'.


Revision 1920 - Directory Listing
Modified Thu Oct 23 10:05:27 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
remove unused vars.

Revision 1919 - Directory Listing
Modified Thu Oct 23 10:03:10 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
Remove un-used vars introduced by my _WIN32 compilation branch. This is a checkin to allow a test of both compilation brabches.

Revision 1912 - Directory Listing
Modified Thu Oct 23 05:08:31 2008 UTC (9 years, 1 month ago) by ksteube
Original Path: trunk/finley
Finished wrapper script by setting PATH.

The wrapper script reproduces the environment of the person who built
the software + values specified in his hostname_options.py file.  A
user can run a python script without setting any environment variables
or loading any SGI modules.


Revision 1907 - Directory Listing
Modified Wed Oct 22 11:41:18 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
Mesh_read.c - remove a debug printout introduced by me (oops).

Pattern_coupling.c - remove declaration of naib where it was not used, and remove naib frpm
omp pragmas where it was not declared, and not used.

Apparently cognac.ivec.org did not like this??



Revision 1900 - Directory Listing
Modified Mon Oct 20 07:33:42 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
Fake commit to sync with my windows machine.

Fix looks like like it worked on Dedbian. Thanks.



Revision 1896 - Directory Listing
Modified Sun Oct 19 23:16:21 2008 UTC (9 years, 1 month ago) by gross
Original Path: trunk/finley
small fixes.

Revision 1895 - Directory Listing
Modified Sat Oct 18 11:06:38 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
Remove the amalgamated test suite because it consumes too much resource on winblows

Revision 1894 - Directory Listing
Modified Sat Oct 18 11:00:08 2008 UTC (9 years, 1 month ago) by phornby
Original Path: trunk/finley
Break run_linearPDEsOnFinley.py into 3 separate test modules to avoid crashes on winblows

Revision 1893 - Directory Listing
Modified Fri Oct 17 09:59:39 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley
brakets in SCAN error detection were missing.

Revision 1887 - Directory Listing
Modified Wed Oct 15 03:26:25 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
Fixed two typos that stopped the test suite from running.

Also, gcc 4.3.2 issued several warnings not seen before:
ignoring the return value of fscanf and using the wrong format
with printf.


Revision 1880 - Directory Listing
Modified Tue Oct 14 04:23:21 2008 UTC (9 years, 2 months ago) by caltinay
Original Path: trunk/finley
s/==/=/ in one more place in generate_dumps.py


Revision 1878 - Directory Listing
Modified Tue Oct 14 03:39:13 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley
new version of JacobiFree Newton GMRES + test added.

Revision 1877 - Directory Listing
Modified Tue Oct 14 02:58:39 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
convection.py checkpointing uses mkdir/rmdir, and under MPI there
was a race condition.

mkdir needs to be run on only one CPU and then a barrier to prevent
working processors from using the directory before it exists.

Added methods domain.MPIBarrier and domain.onMasterProcessor() to
implement this technique.

A more general solution might be possible in the future.


Revision 1876 - Directory Listing
Modified Mon Oct 13 10:19:17 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/finley
ftell lies on windows, so there is a win32 branch that reads the tag lines char by char.

Revision 1872 - Directory Listing
Modified Mon Oct 13 00:18:55 2008 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/finley
Closing the moreshared branch


Revision 1869 - Directory Listing
Modified Thu Oct 9 08:34:40 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley
typo fixed.

Revision 1867 - Directory Listing
Modified Thu Oct 9 05:35:24 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
New method for unit testing to compare two saveVTK files.
Can detect same-ness even if the nodes are re-ordered.
To do: issue with contact elements in that identical
nodes confuses test for node re-ordering.


Revision 1866 - Directory Listing
Modified Thu Oct 9 04:01:06 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
Repair to saveVTK similar to revision 1677 (there we got the number of offsets correct
and in this revision we got the number of types correct).
In case of MPI > 1 do not run saveDX tests since saveDX is not MPI parallel.


Revision 1859 - Directory Listing
Modified Wed Oct 8 03:03:37 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley
first version of testing for transport solver.

Revision 1856 - Directory Listing
Modified Tue Oct 7 07:10:47 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley
The NC dump tests work now with MPI.
In fact the old test did not exactly what it supposed to



Revision 1854 - Directory Listing
Modified Tue Oct 7 01:38:55 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
local_NE0 typo


Revision 1847 - Directory Listing
Modified Fri Oct 3 06:45:34 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/finley
OK, these get the blahcpp.so names correct now.



Revision 1845 - Directory Listing
Modified Fri Oct 3 05:23:47 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley
some naming problem for the installation of escriptcpp and finleycpp. Apparently this came is trough some mofifications in windows

Revision 1841 - Directory Listing
Modified Fri Oct 3 03:57:52 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley
modification on LinearPDE class and a first version of Transport class

Revision 1840 - Directory Listing
Modified Fri Oct 3 03:16:11 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/finley
These now install the correct .pyd files on windows.

Revision 1839 - Directory Listing
Modified Fri Oct 3 02:06:00 2008 UTC (9 years, 2 months ago) by phornby
Original Path: trunk/finley
temporary fix to get run_tests working

Revision 1830 - Directory Listing
Modified Thu Oct 2 06:51:48 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
Tests using JoinFaces() and domain.write() will not work under MPI and must be disabled for num procs > 1


Revision 1829 - Directory Listing
Modified Thu Oct 2 05:40:30 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
Adjusted tests for MPI.
Enabled two tests in run_inputOutput.py for order=2 after recent bugfix.


Revision 1827 - Directory Listing
Modified Thu Oct 2 04:28:07 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
MPI parallelized dump/load for Constant and Tagged data.
run_escriptOnFinley.py runs hybrid MPI/OpenMP.


Revision 1824 - Directory Listing
Modified Thu Oct 2 01:08:25 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
Updated tests for new Mesh_readGmsh.c of revision 1814


Revision 1823 - Directory Listing
Modified Wed Oct 1 05:56:05 2008 UTC (9 years, 2 months ago) by artak
Original Path: trunk/finley
GS preconditioner now works for block_size 2 and 3 as well. Sweep parameter introdiced, but not working yet

Revision 1819 - Directory Listing
Modified Tue Sep 30 05:58:06 2008 UTC (9 years, 2 months ago) by artak
Original Path: trunk/finley
Firs version of symmetric Gauss-Seidel preconditioner with coloring

Revision 1818 - Directory Listing
Modified Tue Sep 30 04:09:13 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley
chnaged the wrong line

Revision 1816 - Directory Listing
Modified Tue Sep 30 03:40:51 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley
bug with MPI fixed (relevant for cases of n0 and n1 < num processors)

Revision 1815 - Directory Listing
Modified Tue Sep 30 02:10:32 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley
tools to generate dump files for relevant data and mesh types

Revision 1814 - Directory Listing
Modified Tue Sep 30 00:21:21 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley
Contact elements have the right tyoe now.

Revision 1811 - Directory Listing
Modified Thu Sep 25 23:11:13 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
Copyright updated in all files


Revision 1810 - Directory Listing
Modified Thu Sep 25 06:53:26 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
Updated copyright for a few remaining python files


Revision 1809 - Directory Listing
Modified Thu Sep 25 06:43:44 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
Copyright updated in all python files


Revision 1807 - Directory Listing
Modified Thu Sep 25 01:04:51 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
The new MPI parallel ReadMesh is now the default after having passed
all tests both with and without MPI.
If you have been using ReadMesh you should notice no difference.
If you were using ReadMeshMPI then change to ReadMesh.


Revision 1805 - Directory Listing
Modified Wed Sep 24 23:39:00 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
Added python-level methods getMPISizeWorld() and getMPIRankWorld() for MPI process info.
Test suite run_inputOutput.py runs on any number of cores now, hybrid may still be a problem.


Revision 1804 - Directory Listing
Modified Wed Sep 24 07:52:19 2008 UTC (9 years, 2 months ago) by gross
Original Path: trunk/finley
a robister version of the upwinding scheme

Revision 1802 - Directory Listing
Modified Tue Sep 23 01:03:29 2008 UTC (9 years, 2 months ago) by jfenwick
Original Path: trunk/finley
Added canTag methods to FunctionSpace and AbstractDomain (and its 
offspring).
This checks to see if the domain supports tags for the given type of 
function space.

Constructors for DataTagged now throw exceptions if you attempt to make 
a DataTagged with a FunctionSpace which does not support tags.
To allow the default constructor to work, NullDomain has a single 
functioncode which "supports" tagging.

Fixed a bug in DataTagged::toString and DataTypes::pointToString.

Added FunctionSpace::getListOfTagsSTL.

algorithm(DataTagged, BinaryFunction) in DataAlgorithm now only 
processes tags known to be in use.
This fixes mantis issue #0000186.

Added comment to Data.h intro warning about holding references if the 
underlying DataAbstract changes.

_python_ unit tests have been updated to test TaggedData with invalid 
FunctionSpaces and to give the correct answers to Lsup etc.



Revision 1801 - Directory Listing
Modified Fri Sep 19 01:37:09 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
Fixed serialization of I/O for MPI...code didn't compile without MPI


Revision 1800 - Directory Listing
Modified Thu Sep 18 05:28:20 2008 UTC (9 years, 2 months ago) by ksteube
Original Path: trunk/finley
Serialized parallel I/O when writing mesh or data to NetCDF file on multiple MPI processors.
Added domain method getMPIComm() to complement getMPISize() and getMPIRank().


Revision 1796 - Directory Listing
Modified Wed Sep 17 01:45:46 2008 UTC (9 years, 3 months ago) by jfenwick
Original Path: trunk/finley
Merged noarrayview branch onto trunk.



Revision 1790 - Directory Listing
Modified Tue Sep 16 07:45:38 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
test is obsolet

Revision 1787 - Directory Listing
Modified Mon Sep 15 01:36:34 2008 UTC (9 years, 3 months ago) by artak
Original Path: trunk/finley
MINRES solver is added to escript. Additional 16 tests are added to run_simplesolve for MINRES and TFQMR solvers

Revision 1777 - Directory Listing
Modified Tue Sep 9 06:39:37 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
Implemented Lutz fix for MPI mesh dump/load using NetCDF


Revision 1776 - Directory Listing
Modified Tue Sep 9 06:03:53 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
Cleared away some debugging prints


Revision 1774 - Directory Listing
Modified Tue Sep 9 03:50:45 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
bug: unitialized values

Revision 1772 - Directory Listing
Modified Tue Sep 9 00:18:49 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
Added tests for reading a finley mesh and comparing it to a newly-created
mesh of the same type

Moved my mesh comparison function to be a class method


Revision 1771 - Directory Listing
Modified Mon Sep 8 22:47:55 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
Removed failing test until we fix a bug.
Fixed several compiler warnings.


Revision 1770 - Directory Listing
Modified Mon Sep 8 06:58:47 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
Detects an array reference out of bounds when running run_inputOutput.py


Revision 1766 - Directory Listing
Modified Mon Sep 8 02:51:14 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
code formatting

Revision 1765 - Directory Listing
Modified Mon Sep 8 02:49:57 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
some fixes for the case of empty processor

Revision 1764 - Directory Listing
Modified Mon Sep 8 02:48:26 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
type for the non mpi case fixed.

Revision 1763 - Directory Listing
Modified Mon Sep 8 02:47:55 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
more code formatting

Revision 1762 - Directory Listing
Modified Mon Sep 8 02:42:39 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
some formatting

Revision 1760 - Directory Listing
Modified Mon Sep 8 02:35:56 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
some renaming of variables to clarify what is going on

Revision 1755 - Directory Listing
Modified Mon Sep 8 01:34:40 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
Added new field to NetCDF dump of mesh


Revision 1754 - Directory Listing
Modified Sun Sep 7 22:07:26 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
Added new test suite run_inputOutput.py to systematically test I/O.
Can determine if two domains are same with Fourier analysis.
Added new method getNumDataPointsGlobal to return number of DPs of a distributed mesh.
Reading of tags in ReadMeshMPI failed occasionally, should be more robust now.


Revision 1753 - Directory Listing
Modified Sun Sep 7 22:01:23 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
Test suite fails due to missing arg in call to Finley_Mesh_createMappings.
Added NULL arg, but still need to find proper fix as loadMesh does not work.

Adjusted SConstruct to delete pythonMPI if not compiled for MPI.


Revision 1750 - Directory Listing
Modified Wed Sep 3 23:09:29 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
small bug fixed

Revision 1749 - Directory Listing
Modified Wed Sep 3 07:25:01 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
fixes a problem with the saveVTK writing under mpi



Revision 1748 - Directory Listing
Modified Wed Sep 3 06:10:39 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
MPI parallelism for Data().dump and load.  Use multiple NetCDF
files, one file per MPI process


Revision 1745 - Directory Listing
Modified Wed Sep 3 00:41:24 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
MPI mesh_read was crashing if tags not present


Revision 1744 - Directory Listing
Modified Tue Sep 2 07:39:18 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
Can now read and MPI distribute a finley mesh including the tags.


Revision 1743 - Directory Listing
Modified Tue Sep 2 00:54:05 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
Avoid crash due to zero-length writes in MPI_File_write_ordered.
Write a space instead of empty string.
The space will be at the end of a line and cause no problem.


Revision 1742 - Directory Listing
Modified Mon Sep 1 05:55:00 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
tests for VTK writer rec9 and Hex27 added

Revision 1741 - Directory Listing
Modified Mon Sep 1 04:06:41 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
VTK writer supports HEX27 and REC9 now.

Revision 1740 - Directory Listing
Modified Fri Aug 29 06:23:11 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
and some fixes for the GMSH reader

Revision 1739 - Directory Listing
Modified Fri Aug 29 06:19:53 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
Fix in the MPI mesh reader: Owner need to be set.



Revision 1738 - Directory Listing
Modified Fri Aug 29 05:06:45 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
some changes improving the robustness for MPI if the elements/processor is small

Revision 1736 - Directory Listing
Modified Fri Aug 29 02:23:16 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
This fixes a problem which is typically arising when using reduced order
with MPI and a "small" number of elements per processor. In this case it
can happen that the couple matrix is not using all entries sent to the
processor. The old implementations assumed that the indices will cover
the entire input. This assumption has been removed.



Revision 1735 - Directory Listing
Modified Fri Aug 29 00:18:26 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
This fixes a bug in the callculation of communication tables in
particular for the data to be send away. The problem was that the
previously used method based on the idea to use the elements stored on a
processor to decide what to send away is not suitable for the reduced
DOF. Now each processor sends a list of the DOFs it is expecting to its
naighbours. 




Revision 1733 - Directory Listing
Modified Thu Aug 28 01:46:07 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
bug fix: if the numer of elements to be generated suppose to be zero
still face elements and nodes are generated. this is fixed now.



Revision 1732 - Directory Listing
Modified Wed Aug 27 05:47:03 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
MPI read of finley mesh file working except for a bug related to mesh_prepare


Revision 1725 - Directory Listing
Modified Tue Aug 26 03:31:49 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
MPI read of .fly mesh file: fixed bug in message size while fanning out elements


Revision 1723 - Directory Listing
Modified Fri Aug 22 04:24:19 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
some unnecessary code removed.

Revision 1722 - Directory Listing
Modified Fri Aug 22 04:20:30 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
The CSR matrix patters handed ober to ParMetis may not containn the main diagonal entry. 
This revisison is fixing the problem.



Revision 1720 - Directory Listing
Modified Fri Aug 22 00:24:35 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
PARAMETIS macro renamed to USE_PARAMETIS as set by scons

Revision 1716 - Directory Listing
Modified Thu Aug 21 05:03:49 2008 UTC (9 years, 3 months ago) by gross
Original Path: trunk/finley
getListOfTags method added to FunctionSpace class

Revision 1713 - Directory Listing
Modified Wed Aug 20 07:03:45 2008 UTC (9 years, 3 months ago) by ksteube
Original Path: trunk/finley
MPI read of mesh.fly: reduced memory requirements


Revision 1707 - Directory Listing
Modified Thu Aug 14 06:38:14 2008 UTC (9 years, 4 months ago) by ksteube
Original Path: trunk/finley
Fixed nightly tests for savanna (no longer running in PBS cause can't
compile on compute node).
Modified domain.print_mesh_info() to tell how many elements are owned by
a node and how many are in the overlap.
Instrumented the preconditioner step.


Revision 1705 - Directory Listing
Modified Thu Aug 14 05:56:40 2008 UTC (9 years, 4 months ago) by ksteube
Original Path: trunk/finley
Branch scons-dev is hereby closed.
Some parts of scons scripts have been re-written.


Revision 1703 - Directory Listing
Modified Thu Aug 14 05:34:25 2008 UTC (9 years, 4 months ago) by artak
Original Path: trunk/finley
TFQMR solver is added to PASO solver. It is not parallelised yet.

Revision 1694 - Directory Listing
Modified Fri Aug 8 04:27:46 2008 UTC (9 years, 4 months ago) by artak
Original Path: trunk/finley
test_NoPDE_vector_variable is changed to avoid 0/0 division

Revision 1677 - Directory Listing
Modified Mon Jul 28 06:36:19 2008 UTC (9 years, 4 months ago) by gross
Original Path: trunk/finley
bug in the MPI version of saveVTK fixed

Revision 1674 - Directory Listing
Modified Fri Jul 25 00:47:16 2008 UTC (9 years, 4 months ago) by artak
Original Path: trunk/finley
Command line options (-e NE and -s solver ) are added

Revision 1669 - Directory Listing
Modified Thu Jul 24 01:10:04 2008 UTC (9 years, 4 months ago) by gross
Original Path: trunk/finley
A problem with VTK writer and MPI is fixed: Apparently MPI_file_open does not "delete" the file  which has the effect that 
if less date are written into the file as the file contained when opened bits of the previous containt remains in the file. This problem is fixed
by deleting the file if it exists before open it with MPI. The additional function Paso_existFile needed to be added as there is no standart C 
function to test the exists of a file.



Revision 1665 - Directory Listing
Modified Wed Jul 23 03:23:03 2008 UTC (9 years, 4 months ago) by gross
Original Path: trunk/finley
bug in the MPI version of saveVTK fixed

Revision 1664 - Directory Listing
Modified Tue Jul 22 03:41:38 2008 UTC (9 years, 4 months ago) by ksteube
Original Path: trunk/finley
Install() on Mac OS was naming shared libs file.dylib...not OK for our
libraries for python calling C++ (escriptcpp.so and finleycpp.so).
This is because python's dlopen() calls only look for .so files.


Revision 1660 - Directory Listing
Modified Mon Jul 21 03:23:46 2008 UTC (9 years, 4 months ago) by ksteube
Original Path: trunk/finley
Some variables were not declared as a result of recent cleanup


Revision 1659 - Directory Listing
Modified Fri Jul 18 02:28:13 2008 UTC (9 years, 5 months ago) by gross
Original Path: trunk/finley
some first version of a robust level set

Revision 1650 - Directory Listing
Modified Tue Jul 15 08:58:22 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/finley
more care with m_t and diagS needed in the pragmas.

Revision 1649 - Directory Listing
Modified Tue Jul 15 08:41:02 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/finley
Make operator=() on exception non-virtual. Should silence the Altix compiler.
However, if an exception is cast to another parent type, and
operator=() is called when the exception so cast is an l-value in the assignment,
an "incomplete" assignment will occur, copying only the parent class members of the 
l-value in the assignmnet.

Revision 1646 - Directory Listing
Modified Tue Jul 15 05:27:39 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/finley
Unused vars due to the #if 0's in the code.

Revision 1645 - Directory Listing
Modified Tue Jul 15 05:26:38 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/finley
unused vars.

Revision 1639 - Directory Listing
Modified Mon Jul 14 08:55:25 2008 UTC (9 years, 5 months ago) by gross
Original Path: trunk/finley


Revision 1637 - Directory Listing
Modified Mon Jul 14 05:34:59 2008 UTC (9 years, 5 months ago) by ksteube
Original Path: trunk/finley
Resolved some compiler warnings
Changed blocktimer to not use strdup, intead malloc and strcpy


Revision 1634 - Directory Listing
Modified Sat Jul 12 09:08:33 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/finley
linux_gcc_eg_options.py:
remove the std99 option, it is no longer needed as the code compiles without
C 1999 extension (need for these extensions elinminated in windows port).
Turn on all warnings except unknown pragmas. Should catch a lot of stuff.

SConstruct:
Impassioned plea

system_dep.h:
Add the standard incantation for dealing with const declarations
in C code called from C and C++

blocktimer:
Get the calling interface right for C code called from C and C++
and use __const as defined in system_dep.h
(Should be re-factored into compiler_dep.h file).

MeshAdapterFactory.cpp:
Since we have (effectively) no control over netCDF policy,
cast const char *'s to char *'s



Revision 1632 - Directory Listing
Modified Sat Jul 12 07:17:50 2008 UTC (9 years, 5 months ago) by trankine
Original Path: trunk/finley
compiling with netcdf on revealed an unused var.

Revision 1628 - Directory Listing
Modified Fri Jul 11 13:12:46 2008 UTC (9 years, 5 months ago) by phornby
Original Path: trunk/finley

Merge in /branches/windows_from_1456_trunk_1620_merged_in branch.

You will find a preserved pre-merge trunk in tags under tags/trunk_at_1625.
That will be useful for diffing & checking on my stupidity.

Here is a list of the conflicts and their resolution at this
point in time.


=================================================================================
(LLWS == looks like white space).

finley/src/Assemble_addToSystemMatrix.c - resolve to branch - unused var. may be wrong.....
finley/src/CPPAdapter/SystemMatrixAdapter.cpp - resolve to branch - LLWS
finley/src/CPPAdapter/MeshAdapter.cpp - resolve to branch - LLWS
paso/src/PCG.c - resolve to branch - unused var fixes.
paso/src/SolverFCT.c - resolve to branch - LLWS
paso/src/FGMRES.c - resolve to branch - LLWS
paso/src/Common.h - resolve to trunk version. It's omp.h's include... not sure it's needed,
but for the sake of saftey.....
paso/src/Functions.c - resolve to branch version, indentation/tab removal and return error
on bad unimplemented Paso_FunctionCall.
paso/src/SolverFCT_solve.c - resolve to branch version, unused vars
paso/src/SparseMatrix_MatrixVector.c - resolve to branch version, unused vars.
escript/src/Utils.cpp - resloved to branch, needs WinSock2.h
escript/src/DataExpanded.cpp - resolved to branch version - LLWS
escript/src/DataFactory.cpp - resolve to branch version
=================================================================================

This currently passes tests on linux (debian), but is not checked on windows or Altix yet.

This checkin is to make a trunk I can check out for windows to do tests on it.

Known outstanding problem is in the operator=() method of exceptions
causing warning messages on the intel compilers.

May the God of doughnuts have mercy on my soul.



Revision 1574 - Directory Listing
Modified Mon May 26 13:59:58 2008 UTC (9 years, 6 months ago) by gross
Original Path: trunk/finley
some modifications that may help to speed up compilation

Revision 1573 - Directory Listing
Modified Mon May 26 13:01:31 2008 UTC (9 years, 6 months ago) by gross
Original Path: trunk/finley
some modifications to run less tests


Revision 1572 - Directory Listing
Modified Mon May 26 12:50:56 2008 UTC (9 years, 6 months ago) by gross
Original Path: trunk/finley
some openmp problems in PCG fixed.

Revision 1570 - Directory Listing
Modified Sat May 24 21:31:04 2008 UTC (9 years, 6 months ago) by gross
Original Path: trunk/finley
modifications to PCG to support dynamic scheduling

Revision 1568 - Directory Listing
Modified Sat May 24 03:15:08 2008 UTC (9 years, 6 months ago) by ksteube
Original Path: trunk/finley
Some testing on ac.apac.edu.au, more work needed
New pyvisi example offscreen.py for offscreen rendering


Revision 1567 - Directory Listing
Modified Thu May 22 22:52:41 2008 UTC (9 years, 6 months ago) by ksteube
Original Path: trunk/finley
scons all_tests passes on Savanna with OMP=1 and OMP=4.
New boost for Savanna.
A few more cases of #s -> %s.


Revision 1566 - Directory Listing
Modified Thu May 22 12:07:35 2008 UTC (9 years, 6 months ago) by gross
Original Path: trunk/finley
some changes to chunk test

Revision 1565 - Directory Listing
Modified Thu May 22 10:19:47 2008 UTC (9 years, 6 months ago) by gross
Original Path: trunk/finley
some small fixes for openmp

Revision 1564 - Directory Listing
Modified Thu May 22 09:31:33 2008 UTC (9 years, 6 months ago) by gross
Original Path: trunk/finley
some openmp dynamic scheduling for MVM.

Revision 1562 - Directory Listing
Modified Wed May 21 13:04:40 2008 UTC (9 years, 6 months ago) by gross
Original Path: trunk/finley
The algebraic upwinding with MPI. The case of boundary constraint needs still some attention. 



Revision 1556 - Directory Listing
Modified Mon May 12 00:54:58 2008 UTC (9 years, 7 months ago) by gross
Original Path: trunk/finley
Modification to allow mixed mode execution. 
In order to keep the code portable accross platform all MPI calls within
parallel regions have been moved. 



Revision 1555 - Directory Listing
Modified Mon May 12 00:32:08 2008 UTC (9 years, 7 months ago) by ksteube
Original Path: trunk/finley
Adjusted vantage point


Revision 1553 - Directory Listing
Modified Thu May 8 09:38:07 2008 UTC (9 years, 7 months ago) by gross
Original Path: trunk/finley
some small bugs fixed to get MPI going with the modification. MPI version of BiCGStab added.

Revision 1552 - Directory Listing
Modified Thu May 8 08:52:41 2008 UTC (9 years, 7 months ago) by gross
Original Path: trunk/finley
some changes to make the implementatiopn of a upwind MPI version easier

Revision 1543 - Directory Listing
Modified Wed Apr 30 23:21:27 2008 UTC (9 years, 7 months ago) by ksteube
Original Path: trunk/finley
Create an MPEG movie from the state.N.vtu files of convection.py using pyvisi


Revision 1518 - Directory Listing
Modified Fri Apr 18 05:47:52 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/finley
Test are created for MINRES and TFQMR methods

Revision 1516 - Directory Listing
Modified Fri Apr 18 01:02:25 2008 UTC (9 years, 8 months ago) by ksteube
Original Path: trunk/finley
Reduced L and changed Arenious from 22.0 to 0.0


Revision 1515 - Directory Listing
Modified Thu Apr 17 23:36:31 2008 UTC (9 years, 8 months ago) by ksteube
Original Path: trunk/finley
Change to 3-D and change viscosity


Revision 1514 - Directory Listing
Modified Wed Apr 16 00:15:44 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/finley
default input parameter iter_restart for GMRES is set to 20

Revision 1513 - Directory Listing
Modified Tue Apr 15 08:47:57 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/finley
pragma ivdep removed. icc produced wrong code.

Revision 1512 - Directory Listing
Modified Tue Apr 15 00:54:25 2008 UTC (9 years, 8 months ago) by ksteube
Original Path: trunk/finley
Some typos


Revision 1494 - Directory Listing
Modified Mon Apr 14 06:53:28 2008 UTC (9 years, 8 months ago) by phornby
Original Path: trunk/finley
Make this exactly the same as the run_linearPDEsOnFinley.py.trunk_version on the windows
port branch.
Makes merge easier later.



Revision 1488 - Directory Listing
Modified Fri Apr 11 00:22:31 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/finley
restart parameter is changed in GMRES(m)

Revision 1483 - Directory Listing
Modified Wed Apr 9 03:20:00 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/finley
command line input parameters manipulation and execution time calculation are added

Revision 1476 - Directory Listing
Modified Mon Apr 7 23:38:50 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/finley
Jacobian-free Newton method added to Paso

Revision 1474 - Directory Listing
Modified Mon Apr 7 01:27:01 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/finley
restart is supported now.

Revision 1472 - Directory Listing
Modified Thu Apr 3 09:07:07 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/finley
some first steps towards restart added

Revision 1471 - Directory Listing
Modified Thu Apr 3 05:19:06 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/finley
test for GMRES solver for Stokes problem added

Revision 1466 - Directory Listing
Modified Wed Apr 2 03:33:43 2008 UTC (9 years, 8 months ago) by artak
Original Path: trunk/finley


Revision 1464 - Directory Listing
Modified Tue Apr 1 23:27:09 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/finley
bug for interpoltion from reduced solution to elements in MPI fixed.

Revision 1463 - Directory Listing
Modified Tue Apr 1 05:20:57 2008 UTC (9 years, 8 months ago) by gross
Original Path: trunk/finley
a better convection code

Revision 1459 - Directory Listing
Modified Thu Mar 27 01:49:10 2008 UTC (9 years, 8 months ago) by ksteube
Original Path: trunk/finley
Implemented ParMETIS for mesh partition optimization under MPI.
Documented optimize=True in User Guide for Brick() and Rectangle().


Revision 1456 - Directory Listing
Modified Thu Feb 28 17:20:49 2008 UTC (9 years, 9 months ago) by phornby
Original Path: trunk/finley
Clean up some debugging files from the branch merge.



Revision 1455 - Directory Listing
Modified Thu Feb 28 17:19:44 2008 UTC (9 years, 9 months ago) by phornby
Original Path: trunk/finley
Merge of branches/windows_from_1431_trunk.

Revamp of the exception system.
Fix unused vars and signed/unsigned comparisons.
defined a macro THROW(ARG) in the system_dep.h's to
deal with the expectations of declarations on different architectures.

Details in the logs of branches/windows_from_1431_trunk.

pre-merge snapshot of the trunk in tags/trunk_at_1452



Revision 1428 - Directory Listing
Modified Wed Feb 27 08:07:11 2008 UTC (9 years, 9 months ago) by trankine
Original Path: trunk/finley
Merge changes from windows port branch to test build on *nix not broken.

Revision 1425 - Directory Listing
Modified Wed Feb 27 06:12:04 2008 UTC (9 years, 9 months ago) by artak
Original Path: trunk/finley
Added new test for BiCGStab in run_simplesolve.py
algorithmic change in BICGSTAB: from r=r-wt to r=s-wt


Revision 1417 - Directory Listing
Modified Mon Feb 25 04:45:48 2008 UTC (9 years, 9 months ago) by gross
Original Path: trunk/finley
some more work on the transport solver.

Revision 1414 - Directory Listing
Modified Thu Feb 14 10:01:43 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/finley
a first verion of a Stokes solver

Revision 1411 - Directory Listing
Modified Thu Feb 7 08:09:15 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/finley
second test for upwinding added

Revision 1410 - Directory Listing
Modified Thu Feb 7 04:24:00 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/finley
a new version of the algebric upwinding a. flux limiter

Revision 1407 - Directory Listing
Modified Mon Feb 4 06:45:48 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/finley
new upwinding algorithm (still fails)

Revision 1402 - Directory Listing
Modified Thu Jan 31 00:17:49 2008 UTC (9 years, 10 months ago) by ksteube
Original Path: trunk/finley
now implemented to read/fan out elements


Revision 1401 - Directory Listing
Modified Fri Jan 25 04:31:18 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/finley
rewrite antidiffusion calculation to avoid coloring for OPENMP parallelization

Revision 1400 - Directory Listing
Modified Thu Jan 24 06:04:31 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/finley
better test example for upwinding added

Revision 1393 - Directory Listing
Modified Mon Jan 21 06:21:14 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/finley
axissymmetric collaps added.

Revision 1392 - Directory Listing
Modified Mon Jan 21 06:20:54 2008 UTC (9 years, 10 months ago) by gross
Original Path: trunk/finley
axissymmetric collaps added.

Revision 1388 - Directory Listing
Modified Fri Jan 11 07:45:58 2008 UTC (9 years, 11 months ago) by trankine
Original Path: trunk/finley
And get the *(&(*&(* name right

Revision 1387 - Directory Listing
Modified Fri Jan 11 07:45:26 2008 UTC (9 years, 11 months ago) by trankine
Original Path: temp/finley
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

Revision 1384 - Directory Listing
Modified Fri Jan 11 02:29:38 2008 UTC (9 years, 11 months ago) by phornby
Original Path: temp_trunk_copy/finley
Make a temp copy of the trunk before checking in the windows changes



Revision 1382 - Directory Listing
Modified Thu Jan 10 00:21:22 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/finley
some tests got deactivated. they are back now.

Revision 1379 - Directory Listing
Modified Wed Jan 9 04:17:03 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/finley
this seems to work on the cognac@ivec.org

Revision 1378 - Directory Listing
Modified Wed Jan 9 03:53:38 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/finley
new reference files considering the change in quadrature schemes



Revision 1377 - Directory Listing
Modified Wed Jan 9 03:45:59 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/finley
Some code was moved around to slow down the bustling intel compiler v10.



Revision 1376 - Directory Listing
Modified Wed Jan 9 01:38:18 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/finley
inserted sys.exit(1) into the tests so scons can detect the failure of the test. 
A similar statement has been removed from an earlier as it produces problems on 64bit Linux. Previously exit(0) was called in case of success but now this is not done in order to avoid a fatal end of the program. in the case of an error in the test there could be a fatal error so but I guess that this not really a problem.

PS: the fact that signal 0 was returned even for the case of an error lead to the illusion that all tests have been completed successfully.



Revision 1375 - Directory Listing
Modified Wed Jan 9 00:15:05 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/finley
bug in interpolation at reduced face elements fixed.

Revision 1374 - Directory Listing
Modified Tue Jan 8 09:37:55 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/finley
some changes to get things going on the cognac.ivec.org.

Revision 1371 - Directory Listing
Modified Thu Jan 3 06:11:21 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/finley
some bugs in the updwing scheme but there are still problem with the cross wind direction.

Revision 1370 - Directory Listing
Modified Wed Jan 2 09:21:43 2008 UTC (9 years, 11 months ago) by gross
Original Path: trunk/finley
explicit upwinding scheme added.

Revision 1368 - Directory Listing
Modified Wed Dec 19 03:45:20 2007 UTC (9 years, 11 months ago) by gross
Original Path: trunk/finley
very first step towards a pythn wrapper for the transport problem.

Revision 1367 - Directory Listing
Modified Wed Dec 19 02:45:07 2007 UTC (9 years, 11 months ago) by gross
Original Path: trunk/finley
finley can now assemble a transport problem.

Revision 1366 - Directory Listing
Modified Tue Dec 18 05:49:17 2007 UTC (10 years ago) by gross
Original Path: trunk/finley
finley can create a TransportProblem now

Revision 1365 - Directory Listing
Modified Mon Dec 17 07:28:23 2007 UTC (10 years ago) by gross
Original Path: trunk/finley
some cosmetics.

Revision 1364 - Directory Listing
Modified Mon Dec 17 07:22:45 2007 UTC (10 years ago) by gross
Original Path: trunk/finley
finley interface to paso's transport solver added.

Revision 1361 - Directory Listing
Modified Fri Dec 14 09:26:51 2007 UTC (10 years ago) by gross
Original Path: trunk/finley
first steps towards a flux controlled transport solver.

Revision 1360 - Directory Listing
Modified Thu Dec 13 05:05:00 2007 UTC (10 years ago) by ksteube
Original Path: trunk/finley
Partial implementation of ReadMeshMPI.
Will eventually replace ReadMesh but for now has a different name.


Revision 1359 - Directory Listing
Modified Wed Dec 5 03:42:09 2007 UTC (10 years ago) by gross
Original Path: trunk/finley
debug print removed.

Revision 1358 - Directory Listing
Modified Wed Dec 5 03:41:06 2007 UTC (10 years ago) by gross
Original Path: trunk/finley
setTaggedValue works now for expanded data.

Revision 1353 - Directory Listing
Modified Thu Nov 22 06:05:35 2007 UTC (10 years ago) by matt
Original Path: trunk/finley
Reversed the removal of blocktimer code. This needs to be fixed properly for
the Windows stuff to work.



Revision 1352 - Directory Listing
Modified Thu Nov 22 03:43:28 2007 UTC (10 years ago) by matt
Original Path: trunk/finley
Removed blocktimer code from Finley_Assemble_PDE().


Revision 1347 - Directory Listing
Modified Fri Nov 16 05:37:07 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk/finley
Completed mesh.dump(file) and mesh=LoadMesh(file) by adding TagMap and
implementing MPI parallelism.
Now allocating ElementFile for ContactElements even if there are none.
Removed file Mesh_dump.c since dump/loadMesh are in CPPAdapter/MeshAdapter*.cpp.


Revision 1346 - Directory Listing
Modified Wed Nov 14 22:48:12 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk/finley
dump/LoadMesh methods work except for TagMap, Point elements probably OK but are untested.


Revision 1345 - Directory Listing
Modified Wed Nov 14 07:53:34 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk/finley
Created LoadMesh to read a mesh from a distributed NetCDF file.
Can read nodes but not elements yet.


Revision 1344 - Directory Listing
Modified Wed Nov 14 04:28:25 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk/finley
Now using TMPMEMFREE but still thrashes memory for very large mesh.
Future solution will be to use NetCDF subsetting and less temp memory.


Revision 1343 - Directory Listing
Modified Wed Nov 14 02:48:02 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk/finley
First cut implementation of mesh.dump() using NetCDF.  TagMap not
saved yet.  The code for Points probably works but has not been tested.


Revision 1342 - Directory Listing
Modified Thu Nov 8 23:56:58 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk/finley
improvements on integration schemes for tets and tris: double precision (not all), higher orders

Revision 1341 - Directory Listing
Modified Thu Nov 8 23:55:20 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk/finley
tests for numerical integration added.

Revision 1340 - Directory Listing
Modified Thu Nov 8 06:24:43 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk/finley
Fixed create a local labeling of the DOFs


Revision 1339 - Directory Listing
Modified Wed Nov 7 01:53:12 2007 UTC (10 years, 1 month ago) by ksteube
Original Path: trunk/finley
Modified scons target release_src to include lib/ and include/ since
their presence is required for a build.  Modified
mydomain.print_mesh_info(True) to include more useful info about a
distributed domain.  Added mypde.getOperator().print_matrix_info(True)
to tell about a distributed matrix.



Revision 1338 - Directory Listing
Modified Mon Nov 5 06:32:29 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk/finley
bug in the selection of the order of the output mesh fixed.

Revision 1335 - Directory Listing
Modified Fri Nov 2 05:54:25 2007 UTC (10 years, 1 month ago) by gross
Original Path: trunk/finley
color ranges were not initialized.

Revision 1326 - Directory Listing
Modified Mon Oct 1 08:10:41 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/finley
Implemented domain.print_mesh_info() so we can see the distribution of elements & nodes.
Implemented -DBOUNDS_CHECK to catch an error with periodicN=True.


Revision 1322 - Directory Listing
Modified Thu Sep 27 04:40:43 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/finley
Code now compiles and runs on cyclone.hpcu.uq.edu.au.
Had to remove intelc from the SConstruct, but didn't commit that change.
Changed a couple C++ comments to C comments.


Revision 1317 - Directory Listing
Modified Tue Sep 25 03:41:48 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/finley
yet another file copied from MPI branch to trunk


Revision 1315 - Directory Listing
Modified Tue Sep 25 02:41:13 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/finley
Copied more files from MPI branch to trunk


Revision 1313 - Directory Listing
Modified Tue Sep 25 01:44:26 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/finley
Copied a handful of files from trunk-mpi-branch into trunk


Revision 1312 - Directory Listing
Modified Mon Sep 24 06:18:44 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/finley
The MPI branch is hereby closed. All future work should be in trunk.

Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.


Revision 1310 - Directory Listing
Modified Mon Sep 24 04:00:47 2007 UTC (10 years, 2 months ago) by ksteube
Original Path: trunk/finley
A few additions to make trunk match trunk-mpi-branch


Revision 1235 - Directory Listing
Modified Mon Aug 13 00:25:29 2007 UTC (10 years, 4 months ago) by phornby
Original Path: trunk/finley
Started the removal of IS_WINDOWS_PLATFORM, and now insis that the windows options file be kept up to date, and be complete.

boost_libs -> boost_lib.

Revision 1221 - Directory Listing
Modified Fri Aug 3 00:27:20 2007 UTC (10 years, 4 months ago) by ksteube
Original Path: trunk/finley
Disabled HRZ lumping until the tests pass


Revision 1220 - Directory Listing
Modified Thu Aug 2 04:46:20 2007 UTC (10 years, 4 months ago) by btully
Original Path: trunk/finley
Included HRZ lumping scheme for the LUMPED solver.


Revision 1204 - Directory Listing
Modified Sat Jun 23 11:43:12 2007 UTC (10 years, 5 months ago) by gross
Original Path: trunk/finley
a frame for an improved lumping procedure added.

Revision 1198 - Directory Listing
Modified Tue Jun 19 00:24:29 2007 UTC (10 years, 6 months ago) by btully
Original Path: trunk/finley
Updated Rec9 Shape Functions.
Included a new definition for Hex27 Reference Element and associated Shape Functions.


Revision 1185 - Directory Listing
Modified Thu May 31 04:33:31 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley
once again: some changes to get the tests passed on windows.

Revision 1181 - Directory Listing
Modified Wed May 30 06:08:44 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley
some more test for vtk interface

Revision 1180 - Directory Listing
Modified Wed May 30 05:53:38 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley
some new test data

Revision 1179 - Directory Listing
Modified Wed May 30 05:10:02 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley
some debug print outs removed.

Revision 1178 - Directory Listing
Modified Wed May 30 05:03:17 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley
bug in visualization interface test fixed.

Revision 1177 - Directory Listing
Modified Wed May 30 05:01:29 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley
debug print out removed.

Revision 1174 - Directory Listing
Modified Tue May 29 07:05:59 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley
more modifications to the test rquired by the new intergartion schemes

Revision 1173 - Directory Listing
Modified Mon May 28 03:29:57 2007 UTC (10 years, 6 months ago) by ksteube
Original Path: trunk/finley
Reverted to revision 1170, update in 1171 was a mistake


Revision 1171 - Directory Listing
Modified Fri May 25 06:55:05 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley
some modifications to the tests to consider the new integration schemes for tri and tet

Revision 1170 - Directory Listing
Modified Fri May 25 05:24:57 2007 UTC (10 years, 6 months ago) by btully
Original Path: trunk/finley
Added new methods for integration of Tri's and Tet's For Order 2 and 3.
NB: There is a conflict in the testing of the getNormal() function. On consultation with Lutz, we have concluded this is an issue with the test rather than the new methods.


Revision 1163 - Directory Listing
Modified Wed May 23 23:56:39 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley
import of DISPLAY environment variable into scons ENV added. This is required to run pyvisi tests under XGL

Revision 1157 - Directory Listing
Modified Mon May 21 06:45:52 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley
ops, wrong name

Revision 1156 - Directory Listing
Modified Mon May 21 06:45:14 2007 UTC (10 years, 6 months ago) by gross
Original Path: trunk/finley
node label optimization

Revision 1149 - Directory Listing
Modified Thu May 17 00:30:15 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/finley
some fixes from the windows version

Revision 1141 - Directory Listing
Modified Tue May 15 04:24:51 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/finley
Some changes to make things run on windows. There is still a problem with netcdf an long file names on windows but there is the suspicion that this is a bigger problem related to boost (compiler options). In fact runs with large numbers of iteration/time steps tend to create seg faults. 

Revision 1139 - Directory Listing
Modified Mon May 14 05:12:53 2007 UTC (10 years, 7 months ago) by ksteube
Original Path: trunk/finley
Finished renaming of boost_lib to boost_libs and boost_lib_path to boost_libs_path.


Revision 1137 - Directory Listing
Modified Thu May 10 08:11:31 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/finley
This version passes the tests on windows except for 

   * vtk
   * netCDF

The version needs to be tested on altix and linux

Revision 1135 - Directory Listing
Modified Wed May 9 01:58:32 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/finley
These are still modifications for windows.

The run_generators.py and run_visualization_interface.py pass now. There is no need for the win32 reference directory. 

Revision 1134 - Directory Listing
Modified Wed May 9 01:44:04 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/finley
fixed a bag in the extra bits to make the ordering unique. This does not effect the correctness of the result but makes sure that the results are independent from the sorting algorithm.

Revision 1133 - Directory Listing
Modified Tue May 8 07:19:33 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/finley
Changes needed for windows. This still does not work on and has not run on linux and the altix. 
 
There are a few changes in names in the scons script, in particular _libs is used rather than _lib and _libs is always a list. By default on windows MSVC is used. The location of python is at C:\Program Files\python<version>, boost at C:\Program Files\boost and netcdf at C:\Program Files\netcdf. 

 

Revision 1116 - Directory Listing
Modified Mon Apr 23 03:36:34 2007 UTC (10 years, 7 months ago) by gross
Original Path: trunk/finley
Interporpolation from full to reduced integration order added.



Revision 1107 - Directory Listing
Modified Thu Apr 19 02:14:18 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
Small bug in ReadMeh call fixed.
Test for typ of verbose argument in pdetools.SaddlePointSolver added.



Revision 1092 - Directory Listing
Modified Fri Apr 13 03:39:49 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
the useless profilinf for data.cpp removed (doDebug=yes should work again)
and a small bug in the gmsh reader fixed.


Revision 1080 - Directory Listing
Modified Wed Apr 11 06:07:30 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
small typo fixed.

Revision 1072 - Directory Listing
Modified Thu Mar 29 06:44:30 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
PDE assemblage for reduced integration order + tests added.



Revision 1065 - Directory Listing
Modified Tue Mar 27 09:04:56 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
tests VTK + DX files for reduced integration order added. Tests pass.

Revision 1064 - Directory Listing
Modified Tue Mar 27 06:21:02 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
test for reduced integration order for grad, interpolate and integrate added.
Bug shown by the tests have been fixed.



Revision 1063 - Directory Listing
Modified Mon Mar 26 08:29:18 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
test for creation of reduced function spaces added.
tests for dumping data on reduced function spaces added.
This showed a small bug with compilation setting for compilation with netCDF which is fixed



Revision 1062 - Directory Listing
Modified Mon Mar 26 06:17:53 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
reduced integration schemes are implemented now for grad, integrate, etc. Tests still to be added.

Revision 1059 - Directory Listing
Modified Fri Mar 23 11:01:53 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
first steps toward reduced element integration order. The escript bit is done but the finley part still needs work.

Revision 1049 - Directory Listing
Modified Tue Mar 20 03:00:18 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
bandwidth optimizer has been moved back (Lutz: switch on your brain.
)

Revision 1048 - Directory Listing
Modified Tue Mar 20 02:59:14 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
bandwidth optimizer has been moved.

Revision 1047 - Directory Listing
Modified Tue Mar 20 02:54:09 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
some clean-up

Revision 1046 - Directory Listing
Modified Tue Mar 20 02:52:24 2007 UTC (10 years, 8 months ago) by gross
Original Path: trunk/finley
the finley benchmarks have been moved into a seperate directory to get keep them out off the building process.

Revision 1044 - Directory Listing
Modified Mon Mar 19 07:29:31 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk/finley
clear name tagging is supported now.

Revision 1030 - Directory Listing
Modified Wed Mar 14 05:14:44 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/finley
Assemble_CopyElementData.c - resolve with my local edits.
Mesh_saveVTK.c - remove debug print.
DataArrayView.h - remove dllim/export declarations on template functions.



Revision 1028 - Directory Listing
Modified Wed Mar 14 00:15:24 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk/finley
modifications to be compliant with _WIN32. The substitutes for asinh, acosh, atanh are still missing (erf will through an exception)

Revision 1022 - Directory Listing
Modified Tue Mar 13 02:25:53 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/finley
Now define the destructors for all the Exceptions (sorry guys & gals).



Revision 1020 - Directory Listing
Modified Mon Mar 12 10:12:36 2007 UTC (10 years, 9 months ago) by phornby
Original Path: trunk/finley
Added explicit destructors to all Exception classes.

Fixed an ifdef in TestCase.cpp

Made the conditional definition of M_PI in LocalOps.h
depend only on M_PI being undefined.

Replace dynamically dimensioned arrays in DataFactory & DataTagged with malloc.

sort() method of list does not take a named argument
(despite the manual's claims to the contary).



Revision 1003 - Directory Listing
Modified Thu Mar 1 01:53:37 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk/finley
small fix on the finley gmsh reader for the case of no face elements.

Revision 997 - Directory Listing
Modified Mon Feb 26 06:31:45 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk/finley
small small fixes in modellib

Revision 990 - Directory Listing
Modified Wed Feb 21 04:27:52 2007 UTC (10 years, 9 months ago) by ksteube
Original Path: trunk/finley
Cleaned up the python in-line doc to make epydoc work better

Configured for shake71 to find NetCDF libraries


Revision 983 - Directory Listing
Modified Tue Feb 20 02:49:08 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk/finley
full Data object dump and load now available. Tests added.

Revision 982 - Directory Listing
Modified Mon Feb 19 23:55:52 2007 UTC (10 years, 9 months ago) by gross
Original Path: trunk/finley
data object load checks for sample  ordering now.

Revision 971 - Directory Listing
Modified Wed Feb 14 04:40:49 2007 UTC (10 years, 10 months ago) by ksteube
Original Path: trunk/finley
Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.



Revision 969 - Directory Listing
Modified Tue Feb 13 23:02:23 2007 UTC (10 years, 10 months ago) by ksteube
Original Path: trunk/finley
Parallelization using MPI for solution of implicit problems.

Parallelization for explicit problems has already been accomplished in
the main SVN branch.

This is incomplete and is not ready for use.



Revision 967 - Directory Listing
Modified Tue Feb 13 09:40:12 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/finley
dump and load of expanded data via netCDF added. some test are still missing.

Revision 965 - Directory Listing
Modified Tue Feb 13 05:38:45 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/finley
johns local setting removed.

Revision 964 - Directory Listing
Modified Tue Feb 13 05:10:26 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/finley
The set/getRefVal functions of Data objects have been removed (mainly to avoid later problems with MPI).
Moreover, a faster access to the reference id of samples has been introduced. I don't think that anybody will
profit form this at this stage but it will allow a faster dump of data objects.



Revision 960 - Directory Listing
Modified Tue Feb 13 01:39:05 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/finley
typo in file name fixed

Revision 959 - Directory Listing
Modified Tue Feb 13 01:38:39 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/finley
typo in file name fixed

Revision 950 - Directory Listing
Modified Tue Feb 6 07:01:11 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/finley
escript data objects can now be saved to netCDF files, see http://www.unidata.ucar.edu/software/netcdf/.
Currently only constant data are implemented with expanded and tagged data to follow.
There are two new functions to dump a data object

   s=Data(...)
   s.dump(<filename>)

and to recover it

   s=load(<filename>, domain)

Notice that the function space of s is recovered but domain is still need. 

dump and load will replace archive and extract.

The installation needs now the netCDF installed. 



Revision 944 - Directory Listing
Modified Tue Jan 30 08:57:37 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/finley
PropertySet added

Revision 940 - Directory Listing
Modified Mon Jan 29 00:09:08 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/finley
ivdep removed as it produces wrong results with OPenMP

Revision 939 - Directory Listing
Modified Thu Jan 25 04:23:38 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/finley
bug in finley mesh reader fixed

Revision 935 - Directory Listing
Modified Tue Jan 23 09:53:10 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/finley
a missing file

Revision 934 - Directory Listing
Modified Tue Jan 23 09:52:45 2007 UTC (10 years, 10 months ago) by gross
Original Path: trunk/finley
gmsh file reader for finley

Revision 929 - Directory Listing
Modified Wed Jan 17 07:41:13 2007 UTC (10 years, 11 months ago) by gross
Original Path: trunk/finley
reverse orientation added but does not work for 2D yet.

Revision 903 - Directory Listing
Modified Fri Nov 17 01:59:49 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley
bug with tagged data in vtk and dx writer fixed

Revision 897 - Directory Listing
Modified Thu Nov 9 07:37:40 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley
cfs added

Revision 896 - Directory Listing
Modified Thu Nov 9 05:46:31 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley
a new version

Revision 895 - Directory Listing
Modified Thu Nov 9 05:45:55 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley
moved to make plave for better version

Revision 894 - Directory Listing
Modified Thu Nov 9 05:45:22 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley


Revision 893 - Directory Listing
Modified Wed Nov 8 08:20:19 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley
small bug fixed

Revision 892 - Directory Listing
Modified Wed Nov 8 06:14:29 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley


Revision 888 - Directory Listing
Modified Tue Nov 7 08:31:26 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley
Problem in Mesh_findMatchingFaces.c fixed:
default tolerance in python interface was set too tight.




Revision 887 - Directory Listing
Modified Thu Nov 2 07:17:07 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley
some more work on the slip distribution

Revision 884 - Directory Listing
Modified Mon Oct 30 06:37:30 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley
simple mesh generator for slip_stress

Revision 883 - Directory Listing
Modified Mon Oct 30 06:12:54 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley
new example added

Revision 878 - Directory Listing
Modified Wed Oct 25 03:42:56 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley
bigger mesh

Revision 877 - Directory Listing
Modified Wed Oct 25 03:06:58 2006 UTC (11 years, 1 month ago) by gross
Original Path: trunk/finley
backtraking in the saddlepoint problem (not perfect yet)

Revision 873 - Directory Listing
Modified Mon Oct 16 04:07:33 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley
uszawa scheme runs with variable viscosity

Revision 868 - Directory Listing
Modified Tue Oct 10 22:32:13 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley
new benchmark problem

Revision 866 - Directory Listing
Modified Mon Oct 9 03:50:20 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley
now GEAR scheme is used

Revision 865 - Directory Listing
Modified Fri Oct 6 10:02:18 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley
some functions for minimizing a function added. there is still some work required but successfully applied in an aplication

Revision 862 - Directory Listing
Modified Tue Oct 3 06:01:30 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley
bug in mesh generator fixed.

Revision 859 - Directory Listing
Modified Tue Sep 26 02:19:18 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley
tests for order2 tetrahedron elements added


Revision 858 - Directory Listing
Modified Tue Sep 26 01:01:39 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley
typo fixed

Revision 857 - Directory Listing
Modified Tue Sep 26 01:00:45 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley
tests for order1 tetrahedron elements added

Revision 855 - Directory Listing
Modified Fri Sep 22 09:30:06 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley
some tests for triangle meshes added

Revision 853 - Directory Listing
Modified Wed Sep 20 05:56:36 2006 UTC (11 years, 2 months ago) by gross
Original Path: trunk/finley
some performance problems wit openmp fixed.

Revision 850 - Directory Listing
Modified Sun Sep 17 23:27:00 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/finley
some problems with vtk writer fixed

Revision 844 - Directory Listing
Modified Thu Sep 7 08:32:01 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/finley
with better  mesh

Revision 843 - Directory Listing
Modified Thu Sep 7 05:55:12 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/finley
some timing added

Revision 842 - Directory Listing
Modified Thu Sep 7 05:40:22 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/finley
a little wave propagation simulation

Revision 820 - Directory Listing
Modified Mon Aug 28 06:55:36 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/finley
make the modelframe test run

Revision 818 - Directory Listing
Modified Sun Aug 27 11:10:34 2006 UTC (11 years, 3 months ago) by dhawcroft
Original Path: trunk/finley
saveVTK fixes



Revision 817 - Directory Listing
Modified Sat Aug 26 03:08:52 2006 UTC (11 years, 3 months ago) by ksteube
Original Path: trunk/finley
Can now compile and run with MPI on shake71



Revision 815 - Directory Listing
Modified Wed Aug 23 09:31:50 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/finley
ops! wrong file has been sent

Revision 814 - Directory Listing
Modified Wed Aug 23 09:31:10 2006 UTC (11 years, 3 months ago) by gross
Original Path: trunk/finley
small bug in general tensor propduct fixed

Revision 812 - Directory Listing
Modified Thu Aug 17 05:49:59 2006 UTC (11 years, 4 months ago) by dhawcroft
Original Path: trunk/finley


Revision 808 - Directory Listing
Modified Fri Aug 11 01:25:16 2006 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/finley
Can now build escript and use doxygen on shake71



Revision 806 - Directory Listing
Modified Thu Aug 10 11:58:52 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk/finley
Interface to the direct solver library UMLPACK is no implemented.



Revision 799 - Directory Listing
Modified Mon Aug 7 23:30:53 2006 UTC (11 years, 4 months ago) by ksteube
Original Path: trunk/finley
Moved a #pragma to modify the appropriate line


Revision 798 - Directory Listing
Modified Fri Aug 4 01:05:36 2006 UTC (11 years, 4 months ago) by gross
Original Path: trunk/finley
Reimplementation of the assemblage with persistent jacobeans.
There are also a few changes to the tests which has now
dramatically reduced the memory demand.



Revision 796 - Directory Listing
Modified Mon Jul 31 06:16:17 2006 UTC (11 years, 4 months ago) by dhawcroft
Original Path: trunk/finley
much faster parallel saveVTK
needs testers, don't be shy


Revision 794 - Directory Listing
Modified Sun Jul 30 03:45:01 2006 UTC (11 years, 4 months ago) by dhawcroft
Original Path: trunk/finley


Revision 793 - Directory Listing
Modified Sat Jul 29 19:40:22 2006 UTC (11 years, 4 months ago) by dhawcroft
Original Path: trunk/finley
Preliminary MPI version of saveVTK. Needs testers. Works for point data and should work for cell centered data.

Revision 788 - Directory Listing
Modified Wed Jul 26 05:12:15 2006 UTC (11 years, 4 months ago) by bcumming
Original Path: trunk/finley
small corrections to code in previous commit, and some header files that
should have been included in the last commit.



Revision 787 - Directory Listing
Modified Wed Jul 26 01:46:45 2006 UTC (11 years, 4 months ago) by bcumming
Original Path: trunk/finley
MPI update
Each element (normal elements, faceElements, ContactElements and points)
are now assigned a unique global id to streamline per-element
calculations and file IO of element data.




Revision 783 - Directory Listing
Modified Tue Jul 18 01:32:50 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/finley
coordinates, element size and normals returned by corresponding
FunctionSpace mesthods are now protected against updates. So 
+=, -=, *=, /=, setTaggedValue, fillFromNumArray will through an
excpetion.

The FunctionSpace class does nut buffer the oordinates, element size and
normals yet.



Revision 782 - Directory Listing
Modified Tue Jul 18 00:47:47 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk/finley
Large number of changes to Finley for meshing in MPI.

- optimisation and neatening up of rectcanglular mesh generation code
- first and second order 1D, 2D and 3D rectangular meshes are now
  available in finley and escript using MPI.
- reduced meshes now generated in MPI, and interpolation to and from 
  reduced data types now supported.  


Revision 781 - Directory Listing
Modified Fri Jul 14 08:47:38 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/finley
grad functions linked into the persistent jacobean scheme

Revision 779 - Directory Listing
Modified Fri Jul 14 07:41:31 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk/finley
+ Updated compilation options for Cognac to squeeze out a bit more performance
+ Now compiles using the Intel Math headers (mathimf.h) rather than plain math.h on both Win32 and Linux platforms when using the Intel compiler. Gives a small boost to performance on Altix and is essential on Windows



Revision 778 - Directory Listing
Modified Thu Jul 13 02:27:45 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/finley
add a switch to stop calls of external solver libraries

Revision 777 - Directory Listing
Modified Wed Jul 12 08:54:45 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/finley
integration with persistent jacobeans is running now

Revision 776 - Directory Listing
Modified Wed Jul 12 00:07:31 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/finley
basic code for persistence of jacobeans added. routines are not called yet

Revision 773 - Directory Listing
Modified Fri Jul 7 10:10:00 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/finley
assemblage tests added

Revision 769 - Directory Listing
Modified Sun Jul 2 23:58:22 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/finley
A bit more tests are generated now. Ther is still a problem with the slection of the solution order.



Revision 768 - Directory Listing
Modified Fri Jun 30 09:26:16 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/finley
and the generation of tests for contact elements works now.

Revision 767 - Directory Listing
Modified Fri Jun 30 07:29:08 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/finley
new FunctionSpace method setTags added

Revision 766 - Directory Listing
Modified Fri Jun 30 06:44:14 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/finley
modified version of a test generator (private use)

Revision 765 - Directory Listing
Modified Fri Jun 30 06:37:11 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/finley
The test for the contact normal has been modified to take in cosideration the fact that the normal is unique up to the factor +/-1. 
Now the test checks the kllength of the normal for 1 and the angle to the reference normal.



Revision 763 - Directory Listing
Modified Fri Jun 30 05:52:31 2006 UTC (11 years, 5 months ago) by gross
Original Path: trunk/finley
some modification in the element reordering which should solve some problems 
caused by the fact that qsort may handels == items differently on different platform.



Revision 759 - Directory Listing
Modified Thu Jun 29 01:53:23 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk/finley
- added directory pythonMPI to the source tree. this directory contains
  the c++ wrapper that is used to run python scripts in parallel for the
  MPI version of escript/finley
- updated the SConstruct and ./scons/ess_options.py for conditional MPI
  compilation. To compile the MPI version on ESS uncomment the #define
  PASO_MPI in ./paso/src/Paso.h and add the command line option
  useMPI=yes when running scons.
- fixed a compile time error in the MPI build in  
  finley/src/CPPAdapter/MeshAdapterFactory.cpp 
     


Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (11 years, 5 months ago) by woo409
Original Path: trunk/finley
+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)


Revision 751 - Directory Listing
Modified Mon Jun 26 01:46:34 2006 UTC (11 years, 5 months ago) by bcumming
Original Path: trunk/finley
Changes relating to the MPI version of escript
The standard OpenMP version of escript is unchanged

- updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes
  over multiple MPI processes.
- added CommBuffer code in Paso for communication of Data associated
  with distributed meshes
- updates in Finley and Escript to support distributed data and operations
  on distributed data (such as interpolation).
- construction of RHS in MPI, so that simple explicit schemes (such as
  /docs/examples/wave.py without IO and the Locator) can run in MPI.
- updated mesh generation for first order line, rectangle and brick
  meshes and second order line meshes in MPI.        
- small changes to trunk/SConstruct and trunk/scons/ess_options.py to
  build the MPI version, these changes are turned off by default.


Revision 731 - Directory Listing
Modified Mon May 15 04:09:52 2006 UTC (11 years, 7 months ago) by bcumming
Original Path: trunk/finley


Revision 730 - Directory Listing
Modified Mon May 15 04:03:49 2006 UTC (11 years, 7 months ago) by bcumming
Original Path: trunk/finley


Revision 727 - Directory Listing
Modified Fri May 12 06:31:06 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk/finley
In case of an error in paso a seg fault occured. this was caused by
inproper deallocation of memory in this case. this problem is fixed now.



Revision 720 - Directory Listing
Modified Thu Apr 27 10:16:05 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk/finley
formatting errors in epydoc tags fixed

Revision 714 - Directory Listing
Modified Thu Apr 27 05:42:33 2006 UTC (11 years, 7 months ago) by elspeth
Original Path: trunk/finley
Fixed python test

Revision 709 - Directory Listing
Modified Wed Apr 26 06:35:36 2006 UTC (11 years, 7 months ago) by gross
Original Path: trunk/finley
fixes to get scons py_tests going: mainly fixes in the pathes

Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley
latex build documentation is working now

Revision 706 - Directory Listing
Modified Sat Apr 8 16:13:02 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley
python tests compile and run but there is still a problem with dependencies'


Revision 705 - Directory Listing
Modified Fri Apr 7 17:57:37 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley
python tests are allmost working

Revision 703 - Directory Listing
Modified Thu Apr 6 02:20:47 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley
some missing files

Revision 700 - Directory Listing
Modified Thu Apr 6 00:13:40 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley
A few changes in the build mechanism and the file structure so scons can build release tar files:

  * paso/src/Solver has been moved to paso/src 
  * all test_.py are now run_.py files and are assumed to be passing python tests. they can run by 
    scons py_tests and are part of the release test set
  * escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory 
    (rather then the PYTHONPATH).
  * all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i
    by not run automatically.
  * CppUnitTest is now treated as a escript module (against previous decisions).
  * scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files)

the python tests don't pass yet due to path problems.



Revision 699 - Directory Listing
Modified Fri Mar 31 06:27:56 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley
now float**Data is running

Revision 698 - Directory Listing
Modified Fri Mar 31 04:52:55 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley
test with tagged data pass now

Revision 692 - Directory Listing
Modified Thu Mar 30 08:05:02 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley
test with tagged data still fail and switched off

Revision 690 - Directory Listing
Modified Tue Mar 28 07:18:51 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk/finley
+ Added basic_py_tests target which will run the basic set of python tests. The list of python tests was taken from autoscons


Revision 687 - Directory Listing
Modified Mon Mar 27 22:17:32 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley
small fixes

Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (11 years, 8 months ago) by robwdcock
Original Path: trunk/finley
+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3



Revision 643 - Directory Listing
Modified Fri Mar 24 00:28:41 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk/finley
More copyright info added.


Revision 637 - Directory Listing
Modified Thu Mar 23 10:55:31 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley
more copyright statements added

Revision 626 - Directory Listing
Modified Thu Mar 23 02:16:36 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk/finley
Copyright information inserted


Revision 620 - Directory Listing
Modified Wed Mar 22 07:43:42 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley
problem with tagged data isolated

Revision 618 - Directory Listing
Modified Wed Mar 22 04:02:38 2006 UTC (11 years, 8 months ago) by gross
Original Path: trunk/finley
mmio moced to paso

Revision 617 - Directory Listing
Modified Wed Mar 22 02:58:17 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk/finley
More copyright.


Revision 616 - Directory Listing
Modified Wed Mar 22 02:46:56 2006 UTC (11 years, 8 months ago) by elspeth
Original Path: trunk/finley
Copyright added to more source files.


Revision 602 - Directory Listing
Modified Fri Mar 17 06:57:46 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/finley
more work on pyvisi integration

Revision 595 - Directory Listing
Modified Tue Mar 14 23:52:45 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/finley
test_utilOnFinley fixed (did run the tests that still fail)

Revision 590 - Directory Listing
Modified Fri Mar 10 06:29:14 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/finley
all tests activated

Revision 589 - Directory Listing
Modified Fri Mar 10 06:28:35 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/finley
my little test generator

Revision 584 - Directory Listing
Modified Thu Mar 9 23:03:38 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/finley
eigenvalues: compiles and passes tests on altix now

Revision 580 - Directory Listing
Modified Wed Mar 8 05:45:51 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/finley
faster version of the local eigenvalue calculation

Revision 558 - Directory Listing
Modified Thu Feb 23 01:02:31 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/finley
switch back to test on no tagged data

Revision 553 - Directory Listing
Modified Wed Feb 22 04:01:21 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/finley
tests for tagged data

Revision 552 - Directory Listing
Modified Wed Feb 22 03:18:07 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/finley
and more work on saving the element jacobians (please don;t look at the code)

Revision 550 - Directory Listing
Modified Wed Feb 22 02:14:38 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/finley
more tests on slicing

Revision 547 - Directory Listing
Modified Tue Feb 21 06:10:54 2006 UTC (11 years, 9 months ago) by gross
Original Path: trunk/finley
solution and reduced solution can have reference numbers now!

Revision 532 - Directory Listing
Modified Wed Feb 15 09:45:53 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
first steps towards the reuse of the element jacobians

Revision 526 - Directory Listing
Modified Tue Feb 14 06:56:33 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
pdetools test added

Revision 521 - Directory Listing
Modified Tue Feb 14 05:50:56 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
now done test_utilOnFinley.py

Revision 491 - Directory Listing
Modified Thu Feb 2 08:21:10 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
small  bug fixed

Revision 484 - Directory Listing
Modified Thu Feb 2 02:12:08 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
add remainder of includes to SConscript includes install

Revision 481 - Directory Listing
Modified Wed Feb 1 05:57:50 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
add mechanism to install .h files to inc directories
(still need to specify full lists of .h files to install)


Revision 480 - Directory Listing
Modified Wed Feb 1 05:15:12 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
rationalise #includes and forward declarations


Revision 479 - Directory Listing
Modified Wed Feb 1 04:36:53 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
a few more benchmarks added

Revision 474 - Directory Listing
Modified Mon Jan 30 04:23:44 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
restructure escript source tree
move src/Data/* -> src
remove inc
modify #includes and cpppath settings accordingly


Revision 473 - Directory Listing
Modified Fri Jan 27 01:59:09 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
make adjustments to allow for new source tree structure


Revision 472 - Directory Listing
Modified Fri Jan 27 01:50:59 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
rationalise all #includes


Revision 471 - Directory Listing
Modified Fri Jan 27 01:33:02 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
reorganise finley src tree to remove inc dir and src/finley directory


Revision 468 - Directory Listing
Modified Wed Jan 25 06:50:39 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
reorganised esysUtils to remove inc directory

Revision 467 - Directory Listing
Modified Wed Jan 25 05:43:46 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
adjustments to includes to allow for new paso src tree structure

Revision 464 - Directory Listing
Modified Wed Jan 25 00:42:41 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
typo fixed: the anisotropic problems are returneing the correct answer now.

Revision 461 - Directory Listing
Modified Wed Jan 25 00:01:12 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
systems benchmarks run now

Revision 460 - Directory Listing
Modified Tue Jan 24 07:53:39 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
some mopre problems added

Revision 459 - Directory Listing
Modified Tue Jan 24 07:51:02 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
some mopre problems added

Revision 457 - Directory Listing
Modified Tue Jan 24 06:13:03 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
fix installation to directories specified by pyinstall and libinstall


Revision 455 - Directory Listing
Modified Tue Jan 24 04:36:54 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
minor comment and formatting changes


Revision 454 - Directory Listing
Modified Tue Jan 24 01:34:31 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
replace libdir default settings - SConstruct was broken without them


Revision 453 - Directory Listing
Modified Tue Jan 24 01:23:28 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
reset the solver

Revision 452 - Directory Listing
Modified Mon Jan 23 23:48:50 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
iter_max increased

Revision 450 - Directory Listing
Modified Mon Jan 23 05:04:45 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
remove old make based build system


Revision 449 - Directory Listing
Modified Mon Jan 23 03:48:51 2006 UTC (11 years, 10 months ago) by jgs
Original Path: trunk/finley
finley source directories now merged into one directory: src/finley


Revision 448 - Directory Listing
Modified Mon Jan 23 03:04:06 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
small typy fixed

Revision 447 - Directory Listing
Modified Mon Jan 23 02:59:59 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
a simple linear elastic solver

Revision 446 - Directory Listing
Modified Mon Jan 23 00:36:07 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
typo fixed

Revision 443 - Directory Listing
Modified Fri Jan 20 06:22:38 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
L2 function added

Revision 442 - Directory Listing
Modified Fri Jan 20 04:39:43 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
kronecker (and relatives) take now a FunctionSpace as argument and return a Data object in tthis functionspace

Revision 437 - Directory Listing
Modified Fri Jan 20 00:16:58 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
comprehensive testing for integrate function added. tests for grad will be added in the next check in. GradTest is obsolete now.

Revision 435 - Directory Listing
Modified Thu Jan 19 03:57:30 2006 UTC (11 years, 10 months ago) by gross
Original Path: trunk/finley
minor change

Revision 432 - Directory Listing
Modified Fri Jan 13 07:38:54 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
some fixes for openmp

Revision 431 - Directory Listing
Modified Fri Jan 13 05:07:10 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
new implementation of ILU0

Revision 430 - Directory Listing
Modified Wed Jan 11 06:40:50 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
ILU has been replicated is called RILU (recursive ILU) now. ILU will now be reimplemented.

Revision 428 - Directory Listing
Modified Wed Jan 11 01:38:16 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
interplotared is changed from method to function call

Revision 425 - Directory Listing
Modified Tue Jan 10 04:10:39 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
The sparse solver can be called by paso now. 

the building has been change to reduce some code redundancy:
now all scons SCscripts are importing scons/esys_options.py which
imports platform specific settings. 




Revision 423 - Directory Listing
Modified Fri Jan 6 08:09:43 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
some modifications in visualization to get equidistant output

Revision 416 - Directory Listing
Modified Wed Jan 4 05:38:35 2006 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
changes in Paso have been worked in

Revision 404 - Directory Listing
Modified Thu Dec 22 23:04:55 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
direct solver works for symmetry flag now

Revision 402 - Directory Listing
Modified Thu Dec 22 22:46:54 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
cut of for small values

Revision 399 - Directory Listing
Modified Wed Dec 21 22:43:48 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
frame to run a single test out of the test_util suite

Revision 389 - Directory Listing
Modified Tue Dec 20 03:17:28 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
Laplace benchmarks added

Revision 388 - Directory Listing
Modified Tue Dec 20 03:13:17 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
laplace benchmarks added

Revision 384 - Directory Listing
Modified Mon Dec 19 06:11:32 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
finleybench is build now

Revision 383 - Directory Listing
Modified Mon Dec 19 06:10:45 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
Finley options added plus some other stuff

Revision 382 - Directory Listing
Modified Mon Dec 19 06:09:49 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
run finley benchmark

Revision 381 - Directory Listing
Modified Mon Dec 19 03:15:44 2005 UTC (11 years, 11 months ago) by gross
Original Path: trunk/finley
first version of a finley benchmark suite for test the paso solver

Revision 362 - Directory Listing
Modified Thu Dec 15 02:07:55 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
removed unit-test runner scripts as unit-tests now run from scons

Revision 360 - Directory Listing
Modified Thu Dec 15 01:52:16 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
add target to run all unit tests, the build will fail
for this target if any unit test fails


Revision 355 - Directory Listing
Modified Wed Dec 14 05:05:31 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
add explicit target for building of unit tests


Revision 352 - Directory Listing
Modified Wed Dec 14 02:21:37 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
turns out Install() targets should also be made Default()
targets if you want them to actually reliably work!


Revision 340 - Directory Listing
Modified Mon Dec 12 05:10:45 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
pass in pyinstall value from top-level scons script and add
correct suffix in module level scons scipr


Revision 325 - Directory Listing
Modified Wed Dec 7 02:08:17 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
now determine hostname via socket.gethostname() as HOSTNAME
environment variable is apparently not set on all platforms


Revision 324 - Directory Listing
Modified Wed Dec 7 01:10:36 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
add symlinks to include files - previously added by hand as cvs couldn't
handle them


Revision 320 - Directory Listing
Modified Tue Dec 6 04:35:27 2005 UTC (12 years ago) by svn
Original Path: trunk/finley
unit tests now run ok

Revision 319 - Directory Listing
Modified Tue Dec 6 04:25:37 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
temporary unit tests scripts

Revision 309 - Directory Listing
Modified Mon Dec 5 01:59:58 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
now load default options - by default!


Revision 303 - Directory Listing
Modified Fri Dec 2 05:54:01 2005 UTC (12 years ago) by gross
Original Path: trunk/finley
is now in modellib

Revision 302 - Directory Listing
Modified Fri Dec 2 05:51:51 2005 UTC (12 years ago) by gross
Original Path: trunk/finley
runs again

Revision 301 - Directory Listing
Modified Fri Dec 2 05:49:29 2005 UTC (12 years ago) by gross
Original Path: trunk/finley
runs again

Revision 300 - Directory Listing
Modified Fri Dec 2 05:47:17 2005 UTC (12 years ago) by gross
Original Path: trunk/finley
runs again

Revision 299 - Directory Listing
Modified Fri Dec 2 05:45:38 2005 UTC (12 years ago) by gross
Original Path: trunk/finley
runs again

Revision 298 - Directory Listing
Modified Fri Dec 2 05:42:11 2005 UTC (12 years ago) by gross
Original Path: trunk/finley
runs again

Revision 296 - Directory Listing
Modified Fri Dec 2 03:55:36 2005 UTC (12 years ago) by gross
Original Path: trunk/finley
test passes now

Revision 294 - Directory Listing
Modified Fri Dec 2 03:47:30 2005 UTC (12 years ago) by gross
Original Path: trunk/finley
test of symbols.py with python

Revision 288 - Directory Listing
Modified Fri Dec 2 01:55:04 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
now automatically build unit tests as required based on dependencies
between unit tests and libraries


Revision 284 - Directory Listing
Modified Thu Dec 1 06:39:23 2005 UTC (12 years ago) by gross
Original Path: trunk/finley
test are passed now

Revision 277 - Directory Listing
Modified Wed Nov 30 04:52:39 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
explicitly define dependencies between modules


Revision 273 - Directory Listing
Modified Wed Nov 30 03:30:40 2005 UTC (12 years ago) by gross
Original Path: trunk/finley
cast to float added. this avoids problems with very small values

Revision 272 - Directory Listing
Modified Wed Nov 30 03:30:30 2005 UTC (12 years ago) by gross
Original Path: trunk/finley
cast to float added. this avoids problems with very small coodinates.

Revision 271 - Directory Listing
Modified Wed Nov 30 03:27:30 2005 UTC (12 years ago) by gross
Original Path: trunk/finley
cast to float added. this avoids problems with very small values

Revision 268 - Directory Listing
Modified Wed Nov 30 01:39:47 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
setup scons configuration to make and install python code


Revision 255 - Directory Listing
Modified Tue Nov 29 06:13:22 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
pass in solver libraries to link with via options files now

Revision 252 - Directory Listing
Modified Tue Nov 29 05:58:03 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
pass in platform specific libraries via options files now


Revision 249 - Directory Listing
Modified Tue Nov 29 05:29:09 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
fix compiler options to enable compilation on gcc platforms

Revision 248 - Directory Listing
Modified Tue Nov 29 04:58:23 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
add top level scons config files to allow building
of all unit tests for each module at once


Revision 246 - Directory Listing
Modified Tue Nov 29 04:27:00 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
allow compile options to be loaded from a config
file specified on the command line to scons


Revision 241 - Directory Listing
Modified Mon Nov 28 06:14:47 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
if usegcc=1 is set on command line, load compiler options
fropm scons/gcc_options.py


Revision 239 - Directory Listing
Modified Mon Nov 28 05:49:32 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
read names of python and boost libraries from config file now


Revision 228 - Directory Listing
Modified Fri Nov 25 02:01:14 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
now read compile options from options file


Revision 224 - Directory Listing
Modified Fri Nov 25 00:33:27 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
implement switching of debug compiler options based on command line flag 'debug'

Revision 223 - Directory Listing
Modified Thu Nov 24 23:12:13 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
pass in cc/cxx settings from config file

Revision 217 - Directory Listing
Modified Thu Nov 24 06:48:50 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
import sys

Revision 216 - Directory Listing
Modified Thu Nov 24 06:35:14 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
first pass at importing compile options from an external file'


Revision 214 - Directory Listing
Modified Thu Nov 24 05:15:26 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
collect all information needed to determine build
configuration (ie: debug/nodebug, host, platform etc)


Revision 211 - Directory Listing
Modified Thu Nov 24 00:29:23 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
removed


Revision 208 - Directory Listing
Modified Wed Nov 23 05:08:45 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
?


Revision 206 - Directory Listing
Modified Wed Nov 23 05:03:42 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
remove MeshAdapter test for now - will only work with scons build system


Revision 205 - Directory Listing
Modified Wed Nov 23 05:02:59 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
fix settings to account for new finley source tree structure


Revision 204 - Directory Listing
Modified Wed Nov 23 04:43:51 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
revised scons files to account for new finley source tree structure


Revision 203 - Directory Listing
Modified Wed Nov 23 04:36:15 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
adjust include file names to allow for new finley source tree structure


Revision 202 - Directory Listing
Modified Wed Nov 23 04:18:39 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
scons builds will now take place in parallel "finley" src dir


Revision 201 - Directory Listing
Modified Wed Nov 23 04:10:21 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
copy finleyC and CPPAdapter to finley and finley/CPPAdapter to
facilitate scons builds


Revision 192 - Directory Listing
Modified Mon Nov 21 04:52:14 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
pass in top level install directory for finley/escript/bruce/paso
libraries when building via top level scons script


Revision 191 - Directory Listing
Modified Mon Nov 21 04:10:12 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
push platform dependent compiler flags and include directories up to library level scons files - these will eventually be brought in from external config files

Revision 190 - Directory Listing
Modified Mon Nov 21 03:27:42 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
pass in value for esysroot and use this to determine include file locations

Revision 188 - Directory Listing
Modified Mon Nov 21 01:20:26 2005 UTC (12 years ago) by jgs
Original Path: trunk/finley
explicitly add -fpic option to all compiler options lists
to ensure relocatable code is generated


Revision 183 - Directory Listing
Modified Fri Nov 18 05:24:37 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/finley
can now build finleyC/finleycpp concurrently


Revision 182 - Directory Listing
Modified Fri Nov 18 05:07:36 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/finley
first draft of config/construct files for finleyC/finleycpp libraries


Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/finley
Copied from: trunk/esys2/finley revision 154
move all directories from trunk/esys2 into trunk and remove esys2


Revision 154 - Directory Listing
Modified Mon Nov 7 05:51:17 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-11-07


Revision 153 - Directory Listing
Modified Tue Oct 25 01:51:20 2005 UTC (12 years, 1 month ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-10-25


Revision 152 - Directory Listing
Modified Fri Oct 21 08:32:21 2005 UTC (12 years, 1 month ago) by phornby
Original Path: trunk/esys2/finley
DataConstantTestCase.cpp, DataExpandedTestCase.cpp:

Replace

DataExpanded testData1(FunctionSpace(),....)

with

FunctionSpace tmp_fns;
DataExpanded testData1(tmp_fns,shape,data);

for GCC's sake.




Added some profiling to PoissonSolverTest.py.


Revision 151 - Directory Listing
Modified Thu Sep 22 01:55:00 2005 UTC (12 years, 2 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-09-22


Revision 150 - Directory Listing
Modified Thu Sep 15 03:44:45 2005 UTC (12 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-09-15


Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (12 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-09-01


Revision 148 - Directory Listing
Modified Tue Aug 23 01:24:31 2005 UTC (12 years, 3 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-08-23


Revision 147 - Directory Listing
Modified Fri Aug 12 01:45:47 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley
erge of development branch dev-02 back to main trunk on 2005-08-12


Revision 146 - Directory Listing
Modified Fri Jul 29 01:44:29 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley
First merge of development branch dev-02 back to main trunk on 2005-07-29


Revision 141 - Directory Listing
Modified Mon Jul 25 05:15:41 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley
fixed to work with new python source/install directory structure


Revision 140 - Directory Listing
Modified Mon Jul 25 00:08:42 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley
add __init__.pyc to install list


Revision 139 - Directory Listing
Modified Mon Jul 25 00:05:12 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley
python init file for finley module


Revision 137 - Directory Listing
Modified Fri Jul 22 07:07:20 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley
removed all references to modellib module


Revision 126 - Directory Listing
Modified Fri Jul 22 03:53:08 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch back to main trunk on 2005-07-22


Revision 123 - Directory Listing
Modified Fri Jul 8 04:08:13 2005 UTC (12 years, 5 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch back to main trunk on 2005-07-08


Revision 122 - Directory Listing
Modified Thu Jun 9 05:38:05 2005 UTC (12 years, 6 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch back to main trunk on 2005-06-09


Revision 121 - Directory Listing
Modified Fri May 6 04:26:16 2005 UTC (12 years, 7 months ago) by jgs
Original Path: trunk/esys2/finley
Merge of development branch back to main trunk on 2005-05-06


Revision 119 - Directory Listing
Modified Tue Apr 12 04:45:05 2005 UTC (12 years, 8 months ago) by jgs
Original Path: trunk/esys2/finley
*** empty log message ***


Revision 117 - Directory Listing
Modified Fri Apr 1 05:48:57 2005 UTC (12 years, 8 months ago) by jgs
Original Path: trunk/esys2/finley
*** empty log message ***


Revision 115 - Directory Listing
Modified Fri Mar 4 07:12:47 2005 UTC (12 years, 9 months ago) by jgs
Original Path: trunk/esys2/finley
*** empty log message ***


Revision 113 - Directory Listing
Modified Mon Feb 28 07:06:33 2005 UTC (12 years, 9 months ago) by jgs
Original Path: trunk/esys2/finley
*** empty log message ***


Revision 110 - Directory Listing
Modified Mon Feb 14 04:14:42 2005 UTC (12 years, 10 months ago) by jgs
Original Path: trunk/esys2/finley
*** empty log message ***


Revision 108 - Directory Listing
Modified Thu Jan 27 06:21:59 2005 UTC (12 years, 10 months ago) by jgs
Original Path: trunk/esys2/finley
*** empty log message ***


Revision 104 - Directory Listing
Modified Fri Dec 17 07:43:12 2004 UTC (13 years ago) by jgs
Original Path: trunk/esys2/finley
*** empty log message ***


Revision 102 - Directory Listing
Modified Wed Dec 15 07:08:39 2004 UTC (13 years ago) by jgs
Original Path: trunk/esys2/finley
*** empty log message ***


Revision 100 - Directory Listing
Modified Wed Dec 15 03:48:48 2004 UTC (13 years ago) by jgs
Original Path: trunk/esys2/finley
*** empty log message ***


Revision 97 - Directory Listing
Modified Tue Dec 14 05:39:33 2004 UTC (13 years ago) by jgs
Original Path: trunk/esys2/finley
*** empty log message ***


Revision 84 - Directory Listing
Modified Tue Oct 26 23:51:56 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/finley
*** empty log message ***


Revision 82 - Directory Listing
Added Tue Oct 26 06:53:54 2004 UTC (13 years, 1 month ago) by jgs
Original Path: trunk/esys2/finley
Initial revision


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