Log of /release/5.1/dudley
Directory Listing
Revision
6593 -
Directory Listing
Modified
Mon Jun 5 03:58:43 2017 UTC
(3 years, 8 months ago)
by
jfenwick
Branching for release 5.1
Revision
6587 -
Directory Listing
Modified
Wed May 24 07:50:23 2017 UTC
(3 years, 9 months ago)
by
jfenwick
Original Path:
trunk/dudley
Fix lazy related test failures.
Revision
6581 -
Directory Listing
Modified
Fri May 19 06:39:36 2017 UTC
(3 years, 9 months ago)
by
caltinay
Original Path:
trunk/dudley
Implement #412 - complex support for paso's coupler.
Removed guards from domains accordingly as complex interpolations without
trilinos are supported now.
Revision
6576 -
Directory Listing
Modified
Wed May 17 01:42:26 2017 UTC
(3 years, 9 months ago)
by
caltinay
Original Path:
trunk/dudley
Finished complex interpolation cases in dudley.
Revision
6575 -
Directory Listing
Modified
Wed May 17 01:04:36 2017 UTC
(3 years, 9 months ago)
by
caltinay
Original Path:
trunk/dudley
complex integration and interpolation in dudley.
Revision
6507 -
Directory Listing
Modified
Wed Mar 1 06:19:04 2017 UTC
(3 years, 11 months ago)
by
jfenwick
Original Path:
trunk/dudley
More netcdf4 work
Still need to convert weipa
Revision
6437 -
Directory Listing
Modified
Mon Nov 7 04:20:32 2016 UTC
(4 years, 3 months ago)
by
jfenwick
Original Path:
trunk/dudley
Fix compile error introduced last time.
Fix more calls in Dudley
Revision
6431 -
Directory Listing
Modified
Sat Nov 5 11:38:07 2016 UTC
(4 years, 3 months ago)
by
caltinay
Original Path:
trunk/dudley
#386: complex gradients for dudley.
Revision
6399 -
Directory Listing
Modified
Wed Aug 3 00:21:25 2016 UTC
(4 years, 6 months ago)
by
caltinay
Original Path:
trunk/dudley
fix warnings for paso-only build.
Revision
6395 -
Directory Listing
Modified
Mon Aug 1 22:25:27 2016 UTC
(4 years, 6 months ago)
by
caltinay
Original Path:
trunk/dudley
moving isDirectSolver() function to escript to correct solver library selection logic.
Also updated Ripley SystemMatrix overload with recent change.
Revision
6378 -
Directory Listing
Modified
Fri Jul 22 06:05:44 2016 UTC
(4 years, 7 months ago)
by
caltinay
Original Path:
trunk/dudley
added unroll flag to dudley and finley and enabled tests that were skipped
before.
Revision
6350 -
Directory Listing
Modified
Tue Jul 5 05:42:37 2016 UTC
(4 years, 7 months ago)
by
caltinay
Original Path:
trunk/dudley
complex dudley 3D PDE systems.
Revision
6347 -
Directory Listing
Modified
Tue Jul 5 04:50:14 2016 UTC
(4 years, 7 months ago)
by
caltinay
Original Path:
trunk/dudley
complex support for dudley 3D single PDEs.
Revision
6345 -
Directory Listing
Modified
Mon Jul 4 05:32:05 2016 UTC
(4 years, 7 months ago)
by
jfenwick
Original Path:
trunk/dudley
Converting minGlobalDataPoint and maxGlobalDataPoint to internal_
That way people should not be using it and we can get rid of #5
Fixed a minor error in an error message.
Revision
6343 -
Directory Listing
Modified
Mon Jul 4 02:11:54 2016 UTC
(4 years, 7 months ago)
by
caltinay
Original Path:
trunk/dudley
implemented complex-valued 2D single PDE solves with dudley.
Revision
6331 -
Directory Listing
Modified
Thu Jun 30 09:31:06 2016 UTC
(4 years, 7 months ago)
by
caltinay
Original Path:
trunk/dudley
fixing unreachable code warnings issued by nvcc.
Revision
6317 -
Directory Listing
Modified
Thu Jun 23 04:48:29 2016 UTC
(4 years, 8 months ago)
by
caltinay
Original Path:
trunk/dudley
parts for feature #3 - automatically choose trilinos if:
1) package == default
2) method == direct
3) trilinos available
4) mpi size > 1
Revision
6312 -
Directory Listing
Modified
Tue Jun 21 06:51:27 2016 UTC
(4 years, 8 months ago)
by
caltinay
Original Path:
trunk/dudley
re-enable MueLu with long-index builds. There are only a few tweaks required
in Trilinos which I have done locally so if the tests pass we can go from
there.
Revision
6298 -
Directory Listing
Modified
Fri Jun 17 04:00:35 2016 UTC
(4 years, 8 months ago)
by
caltinay
Original Path:
trunk/dudley
type fixes in debug mode and savanna lib reference fix.
Revision
6291 -
Directory Listing
Modified
Thu Jun 16 05:47:55 2016 UTC
(4 years, 8 months ago)
by
caltinay
Original Path:
trunk/dudley
advertise if escript was built with long indices as this means we can't run
MueLu (AMG) tests. Increased number of GS sweeps for a test that hangs again.
Revision
6281 -
Directory Listing
Modified
Tue Jun 14 02:42:32 2016 UTC
(4 years, 8 months ago)
by
caltinay
Original Path:
trunk/dudley
Changes to dudley tests. See last commit.
The main things are: separated all test classes that were inheriting from more
than one base class. Also switched to a glob in SConscript as some tests files
were not even in the list to be run.
Revision
6261 -
Directory Listing
Modified
Fri Jun 3 05:13:03 2016 UTC
(4 years, 8 months ago)
by
caltinay
Original Path:
trunk/dudley
fixed shared ptr race in dudley. Store pointer to matrix rather than
shared ptr when assembling PDE. This could be considered part of #365
Revision
6260 -
Directory Listing
Modified
Fri Jun 3 04:15:26 2016 UTC
(4 years, 8 months ago)
by
caltinay
Original Path:
trunk/dudley
modify solver tolerance for trilinos for some tests.
Paso's Jacobi seems to do a better job.
Revision
6237 -
Directory Listing
Modified
Wed Jun 1 01:17:10 2016 UTC
(4 years, 8 months ago)
by
caltinay
Original Path:
trunk/dudley
fixing coverity-detected leak CID 99603
Revision
6215 -
Directory Listing
Modified
Mon May 23 02:58:03 2016 UTC
(4 years, 9 months ago)
by
caltinay
Original Path:
trunk/dudley
trilinos-based DOF->node interpolation in finley. Not complete yet.
Revision
6214 -
Directory Listing
Modified
Fri May 20 07:04:31 2016 UTC
(4 years, 9 months ago)
by
caltinay
Original Path:
trunk/dudley
implemented trilinos interpolation from DOF->nodes in dudley.
Revision
6207 -
Directory Listing
Modified
Mon May 16 00:49:48 2016 UTC
(4 years, 9 months ago)
by
caltinay
Original Path:
trunk/dudley
merged finley Mesh and MeshAdapter into FinleyDomain.
Revision
6205 -
Directory Listing
Modified
Sun May 15 09:40:50 2016 UTC
(4 years, 9 months ago)
by
caltinay
Original Path:
trunk/dudley
minor changes to sync dudley and finley.
Revision
6203 -
Directory Listing
Modified
Wed May 11 06:13:51 2016 UTC
(4 years, 9 months ago)
by
caltinay
Original Path:
trunk/dudley
dudley: merged Mesh and MeshAdapter into DudleyDomain to finally remove the
now unnecessary indirection. If all builders are happy we can do the same
for finley.
Revision
6197 -
Directory Listing
Modified
Fri Apr 29 14:02:32 2016 UTC
(4 years, 9 months ago)
by
caltinay
Original Path:
trunk/dudley
moved Distribution struct to escript and updated domains accordingly.
We can now build the full escript suite without paso (-:
Revision
6196 -
Directory Listing
Modified
Thu Apr 28 03:38:25 2016 UTC
(4 years, 9 months ago)
by
caltinay
Original Path:
trunk/dudley
It looks like there is an issue with paso's GAUSS-SEIDEL and parallel domains
where some ranks have no element, or similar(?)
Getting around this in the unit tests now by optimizing domain distribution,
obviously that only works with parmetis. Alternative would be to use slightly
larger test domains.
Revision
6193 -
Directory Listing
Modified
Wed Apr 27 06:11:40 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
preparations for paso-less dudley.
Revision
6182 -
Directory Listing
Modified
Tue Apr 26 06:31:51 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
rather than skipping pde system tests with trilinos we now expect failures,
which actually translate to quite a few unexpected successes.
There is still a threading issue somewhere...
Revision
6175 -
Directory Listing
Modified
Fri Apr 15 06:59:14 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
make sure to copy python lists rather than adding on or PrependUnique is
useless.
Revision
6174 -
Directory Listing
Modified
Fri Apr 15 03:41:03 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
Some reorganisation of EscriptParams and related changes.
We now distinguish between modifiable parameters and build features.
To interrogate the latter use:
escript::hasFeature() [ python: escript.hasFeature() ]
and
escript::listFeatures() [ python: escript.listFeatures() ]
I have decided to add specific getters for the remaining few parameters to
avoid the penalty of string comparisons and to remove the wealth of friend
declarations with Data* classes.
Also made some changes in SConstruct to make sure we set *all* preprocessor
directives *before* building anything.
Still to do is dealing with checks for direct solver and gmsh. The latter needs
to be a runtime check rather than a compile time check.
Revision
6173 -
Directory Listing
Modified
Thu Apr 14 05:56:55 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
moved reference to JMPI down to Coupler.
Revision
6148 -
Directory Listing
Modified
Wed Apr 6 10:28:13 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
fix savanna options file and make sure libraries get added once only.
Revision
6145 -
Directory Listing
Modified
Wed Apr 6 06:28:57 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
now refraining from adding all libraries to all targets. So we don't link
unnecessary libraries, e.g. escript does not need parmetis etc...
Revision
6144 -
Directory Listing
Modified
Wed Apr 6 05:25:13 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
last round of namespacing defines.
Revision
6132 -
Directory Listing
Modified
Wed Apr 6 00:14:03 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
don't skip test with #ranks=1 and fix it (readGmsh).
Revision
6130 -
Directory Listing
Modified
Tue Apr 5 07:05:01 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
more index_t != int fixes in dudley and finley. Both compile now with index
type long. Weipa doesn't.
Revision
6126 -
Directory Listing
Modified
Tue Apr 5 04:29:41 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
more index_t != int fixes in dudley.
Revision
6124 -
Directory Listing
Modified
Tue Apr 5 03:23:12 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
Fixing python module build on OS X. Added PythonModule builder so we do this generically now.
Revision
6122 -
Directory Listing
Modified
Mon Apr 4 04:15:50 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
two fixes for long int build.
Revision
6119 -
Directory Listing
Modified
Sun Apr 3 23:36:59 2016 UTC
(4 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
merging trilinos branch to trunk.
We can now build with trilinos and use it instead of paso for single PDEs.
There are some more things to be done...
Revision
6034 -
Directory Listing
Modified
Wed Mar 9 00:37:57 2016 UTC
(4 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
a few changes to GroupTest / utest:
GroupTest class now takes a name parameter that is used as (shell) function
name in utest for the test group.
By default all tests are run as before but one can now do:
./utest.sh build '-t2' escriptcpp
to only run the escript c++ unit tests.
Also tweaked a couple things so utest.sh does now work with dash.
Revision
6032 -
Directory Listing
Modified
Tue Mar 8 10:02:26 2016 UTC
(4 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
hmm, I thought we're using globs...
Revision
6031 -
Directory Listing
Modified
Tue Mar 8 06:27:14 2016 UTC
(4 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
added a generic baseclass for PDE solver tests which is used by all domains.
Renamed test files to prepare for Trilinos merge at some point.
Revision
6029 -
Directory Listing
Modified
Mon Mar 7 11:16:41 2016 UTC
(4 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
increase domain size. Not entirely sure why we get spurious runtime errors
only for this test case but we shall see...
Revision
6017 -
Directory Listing
Modified
Thu Mar 3 03:06:42 2016 UTC
(4 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
fixing a few more POSIX_C redefinition warnings.
Revision
6012 -
Directory Listing
Modified
Wed Mar 2 05:06:18 2016 UTC
(4 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
copied fix from finley to dudley.
Revision
6008 -
Directory Listing
Modified
Wed Mar 2 04:09:58 2016 UTC
(4 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
don't call collective within conditional! This was fixed in finley
before.
Revision
6001 -
Directory Listing
Modified
Tue Mar 1 05:01:49 2016 UTC
(4 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
Bye bye esysUtils.
Also removed first.h as escript/DataTypes.h is now required everywhere
and fulfills that role by including a boost python header first.
Revision
6000 -
Directory Listing
Modified
Tue Mar 1 00:24:43 2016 UTC
(4 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
a few more include rearrangements.
Revision
5998 -
Directory Listing
Modified
Mon Feb 29 08:57:28 2016 UTC
(4 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
removed some macros and moved index.h to escript.
Revision
5996 -
Directory Listing
Modified
Mon Feb 29 05:39:02 2016 UTC
(4 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
1) finally put dudley into its own namespace
2) replaced all Esys*Error calls by exceptions in dudley and paso
Revision
5984 -
Directory Listing
Modified
Fri Feb 26 02:00:45 2016 UTC
(5 years ago)
by
caltinay
Original Path:
trunk/dudley
Added IOError. Also started replacing some 'setError()' calls by exception
throws as the latest test failures are bogus because an error was set but
never checked for.
Revision
5982 -
Directory Listing
Modified
Thu Feb 25 07:16:26 2016 UTC
(5 years ago)
by
caltinay
Original Path:
trunk/dudley
all of dudley's Assemble* routines are now in namespace and
I think I removed all DataC use.
Revision
5977 -
Directory Listing
Modified
Wed Feb 24 07:15:04 2016 UTC
(5 years ago)
by
caltinay
Original Path:
trunk/dudley
replaced some DataC usage by equivalent method calls.
Revision
5972 -
Directory Listing
Modified
Wed Feb 24 04:05:30 2016 UTC
(5 years ago)
by
caltinay
Original Path:
trunk/dudley
Major rework of our exceptions. We now have specific
AssertException
NotImplementedError
ValueError
which translate to the corresponding python exception type.
I have gone through a few places and replaced things but not everywhere.
Revision
5967 -
Directory Listing
Modified
Tue Feb 23 05:46:09 2016 UTC
(5 years ago)
by
caltinay
Original Path:
trunk/dudley
found a few instances of MPI_COMM_WORLD and squashed them.
Added member to AbstractDomain that returns a JMPI so we ensure all
domains support that.
Moved appendRankToFilename into class.
Revision
5966 -
Directory Listing
Modified
Tue Feb 23 03:31:17 2016 UTC
(5 years ago)
by
caltinay
Original Path:
trunk/dudley
fixed serial compile and moved mod_rank into class.
Revision
5962 -
Directory Listing
Modified
Mon Feb 22 06:46:23 2016 UTC
(5 years ago)
by
caltinay
Original Path:
trunk/dudley
removed types.h and adapted quite a bit of code...
Revision
5954 -
Directory Listing
Modified
Sun Feb 21 22:40:27 2016 UTC
(5 years ago)
by
caltinay
Original Path:
trunk/dudley
moved exception translators to escript.
Revision
5952 -
Directory Listing
Modified
Fri Feb 19 07:27:31 2016 UTC
(5 years ago)
by
caltinay
Original Path:
trunk/dudley
bye bye blocktimer.
I just tried to use it and the things it reports were plain wrong.
No wonder given the few places it was ever put in.
Also, it seems it has caused more problems than helped over the years
(see svn log).
If we are ever keen to time our code again we might as well do it properly
using PAPI or similar...
Revision
5948 -
Directory Listing
Modified
Fri Feb 19 05:02:39 2016 UTC
(5 years ago)
by
caltinay
Original Path:
trunk/dudley
moved index_t & dim_t into escript::DataTypes and updated files
accordingly. Dudley needs a full sweep of namespacing at some not-distant
future.
Revision
5938 -
Directory Listing
Modified
Thu Feb 18 06:30:35 2016 UTC
(5 years ago)
by
jfenwick
Original Path:
trunk/dudley
Merging from 5937 on the complex branch
Some parts of complex work but all of it is
not unit tested and it is certainly not feature
complete (I haven't put any time into dealing with
subworld for complex).
The other important aspect of this merge is that
c++11 is now required to build escript.
Revision
5929 -
Directory Listing
Modified
Wed Feb 17 07:40:00 2016 UTC
(5 years ago)
by
caltinay
Original Path:
trunk/dudley
Merged pasowrap into paso.
Unfortunately, this required touching quite a few files.
build_shared now defaults to true but will likely disappear altogether
once esysUtils disappears.
Revision
5863 -
Directory Listing
Modified
Wed Jan 13 02:25:48 2016 UTC
(5 years, 1 month ago)
by
jfenwick
Original Path:
trunk/dudley
Copyright dates updated.
\version for doxygen to read
Revision
5857 -
Directory Listing
Modified
Tue Dec 15 07:30:34 2015 UTC
(5 years, 2 months ago)
by
caltinay
Original Path:
trunk/dudley
hmm, this change was necessary on Trusty for some reason, it shouldn't break
other builds...
Revision
5796 -
Directory Listing
Modified
Mon Sep 21 03:43:09 2015 UTC
(5 years, 5 months ago)
by
caltinay
Original Path:
trunk/dudley
Removed some order 2 tests in dudley and fixed docstring to make
clear that dudley only supports order 1.
Revision
5736 -
Directory Listing
Modified
Fri Jul 10 00:34:03 2015 UTC
(5 years, 7 months ago)
by
sshaw
Original Path:
trunk/dudley
made namespace use consistent between header and cpp to help poor doxygen find the right functions
Revision
5706 -
Directory Listing
Modified
Mon Jun 29 03:41:36 2015 UTC
(5 years, 7 months ago)
by
sshaw
Original Path:
trunk/dudley
all python files now force use of python3 prints and division syntax to stop sneaky errors appearing in py3 environs
Revision
5705 -
Directory Listing
Modified
Mon Jun 29 01:07:07 2015 UTC
(5 years, 7 months ago)
by
sshaw
Original Path:
trunk/dudley
no more tab characters in python files
Revision
5703 -
Directory Listing
Modified
Mon Jun 29 00:56:26 2015 UTC
(5 years, 7 months ago)
by
jfenwick
Original Path:
trunk/dudley
Adding/fixing split world tests for domains except speckley
Revision
5699 -
Directory Listing
Modified
Fri Jun 26 05:01:26 2015 UTC
(5 years, 8 months ago)
by
sshaw
Original Path:
trunk/dudley
removing dudley tests that will never work
Revision
5695 -
Directory Listing
Modified
Fri Jun 26 03:28:21 2015 UTC
(5 years, 8 months ago)
by
sshaw
Original Path:
trunk/dudley
some testfile cleanup: python3ifying, unskipping, and less '= False and True'
Revision
5683 -
Directory Listing
Modified
Wed Jun 24 02:00:12 2015 UTC
(5 years, 8 months ago)
by
jfenwick
Original Path:
trunk/dudley
Removing debug output.
SUM variables now reset properly.
More forms of reduction supported.
Revision
5682 -
Directory Listing
Modified
Tue Jun 23 05:59:29 2015 UTC
(5 years, 8 months ago)
by
jduplessis
Original Path:
trunk/dudley
fixing Dudley help comments
Revision
5677 -
Directory Listing
Modified
Mon Jun 22 08:05:28 2015 UTC
(5 years, 8 months ago)
by
jduplessis
Original Path:
trunk/dudley
brick and rectangle documentations updates
Revision
5641 -
Directory Listing
Modified
Thu Jun 11 05:59:46 2015 UTC
(5 years, 8 months ago)
by
sshaw
Original Path:
trunk/dudley
adjusted dict->list conversions to be deterministic under python3 (fixes ranks operating on elements in different orders)
Revision
5593 -
Directory Listing
Modified
Fri Apr 24 01:36:26 2015 UTC
(5 years, 10 months ago)
by
jfenwick
Original Path:
trunk/dudley
Fixing institution name to comply with policy
Revision
5589 -
Directory Listing
Modified
Wed Apr 22 03:13:44 2015 UTC
(5 years, 10 months ago)
by
jfenwick
Original Path:
trunk/dudley
Changes brought across from the debian preparation branch.
Revision
5539 -
Directory Listing
Modified
Tue Mar 17 05:56:07 2015 UTC
(5 years, 11 months ago)
by
jfenwick
Original Path:
trunk/dudley
Made the docstrings for finley and dudley wrappers echo the docstrings from the c++drivers. Removed some old commented out boost.
Revision
5527 -
Directory Listing
Modified
Wed Mar 11 03:48:13 2015 UTC
(5 years, 11 months ago)
by
sshaw
Original Path:
trunk/dudley
test dependencies now use desired build path as check
Revision
5520 -
Directory Listing
Modified
Tue Mar 10 05:34:14 2015 UTC
(5 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
Fixing parmetis options. We've been passing an array that's too small
according to current parmetis doco.
Revision
5496 -
Directory Listing
Modified
Thu Feb 26 00:36:29 2015 UTC
(6 years ago)
by
sshaw
Original Path:
trunk/dudley
fixing a missing build dependency of pythonMPI existing before individual tests are run
Revision
5465 -
Directory Listing
Modified
Mon Feb 16 00:03:05 2015 UTC
(6 years ago)
by
jfenwick
Original Path:
trunk/dudley
We now have an arena where any headers which insist on being first
because they do bad things, can battle to the death.
esysutils/first.h
should only be included in .cpp files.
#define the macros for the features you need in that .cpp
For this to work, any such claims to primacy must be resolved in
first.h, so please don't try to hack pretenders to the throne into the
include hierachy.
Next, will be removing some older attempts at the same thing.
Revision
5432 -
Directory Listing
Modified
Fri Jan 23 02:40:32 2015 UTC
(6 years, 1 month ago)
by
caltinay
Original Path:
trunk/dudley
dudley needs a serious review!
Revision
5429 -
Directory Listing
Modified
Fri Jan 23 00:19:43 2015 UTC
(6 years, 1 month ago)
by
caltinay
Original Path:
trunk/dudley
Looks like debian has a very old version of parmetis so deal with that.
Revision
5419 -
Directory Listing
Modified
Wed Jan 14 09:14:05 2015 UTC
(6 years, 1 month ago)
by
jfenwick
Original Path:
trunk/dudley
Make tests write to the correct directories
Revision
5418 -
Directory Listing
Modified
Wed Jan 14 05:34:55 2015 UTC
(6 years, 1 month ago)
by
jfenwick
Original Path:
trunk/dudley
Fixing some unit test failures on osx
Revision
5326 -
Directory Listing
Modified
Tue Dec 9 05:04:34 2014 UTC
(6 years, 2 months ago)
by
sshaw
Original Path:
trunk/dudley
reinstating old dudley tests that weren't properly being tested due to constructor problems
Revision
5191 -
Directory Listing
Modified
Thu Oct 2 04:40:20 2014 UTC
(6 years, 4 months ago)
by
sshaw
Original Path:
trunk/dudley
adding speckley to ripley interpolation (single process only)
Revision
5183 -
Directory Listing
Modified
Tue Sep 30 05:55:37 2014 UTC
(6 years, 4 months ago)
by
caltinay
Original Path:
trunk/dudley
More long-index work. Added scons option 'longindices'.
Parts will not compile yet if set to true.
Revision
5148 -
Directory Listing
Modified
Mon Sep 15 01:25:23 2014 UTC
(6 years, 5 months ago)
by
caltinay
Original Path:
trunk/dudley
Merging ripley diagonal storage + CUDA support into trunk.
Options file version has been incremented due to new options
'cuda' and 'nvccflags'.
Revision
5121 -
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Modified
Wed Aug 20 10:32:40 2014 UTC
(6 years, 6 months ago)
by
caltinay
Original Path:
trunk/dudley
Made more methods pure virtual in AbstractDomain and moved the generic
implementation into NullDomain.
Made TestDomain derive from NullDomain to inherit the methods.
Revision
5104 -
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Modified
Mon Jul 21 07:47:55 2014 UTC
(6 years, 7 months ago)
by
caltinay
Original Path:
trunk/dudley
Fixed a threading performance issue in finley/dudley by preallocating
chunk in vector and using dynamic arrays directly for parallel region.
Revision
5061 -
Directory Listing
Modified
Fri Jun 20 04:10:59 2014 UTC
(6 years, 8 months ago)
by
jfenwick
Original Path:
trunk/dudley
Added descriptive information to functionspace names
Revision
5059 -
Directory Listing
Modified
Fri Jun 20 03:10:19 2014 UTC
(6 years, 8 months ago)
by
sshaw
Original Path:
trunk/dudley
more test renames, more marking non-test classes, fixed broken test in run_xml
Revision
5055 -
Directory Listing
Modified
Fri Jun 20 01:21:43 2014 UTC
(6 years, 8 months ago)
by
sshaw
Original Path:
trunk/dudley
more test renaming, less silent skipping of tests
Revision
5017 -
Directory Listing
Modified
Tue Jun 10 02:16:18 2014 UTC
(6 years, 8 months ago)
by
sshaw
Original Path:
trunk/dudley
scons now runs tests via a testrunner to collect lists of skipped tests in build/ (examples have their own builder since they aren't unit tests)
fixed hessian regularisation tests falling over by adding a shortcircuit optional arg that returns the pde, not the solution
added missing/omitted tests back into scons tests
Revision
4985 -
Directory Listing
Modified
Mon Jun 2 05:45:58 2014 UTC
(6 years, 8 months ago)
by
sshaw
Original Path:
trunk/dudley
uncommenting decorator that shouldn't have been commented
Revision
4984 -
Directory Listing
Modified
Mon Jun 2 02:50:34 2014 UTC
(6 years, 8 months ago)
by
sshaw
Original Path:
trunk/dudley
revamping testrunners, now uses automated discovery and allows running specific tests without modifying files (see escriptcore/py_src/testing.py for more info/examples)
Revision
4938 -
Directory Listing
Modified
Wed May 14 01:13:23 2014 UTC
(6 years, 9 months ago)
by
jfenwick
Original Path:
trunk/dudley
Modify unit tests to read their classes from
esys.escriptcore.utestselect
Change the line in that file to switch between unittest and unittest2
Revision
4934 -
Directory Listing
Modified
Tue May 13 00:28:11 2014 UTC
(6 years, 9 months ago)
by
jfenwick
Original Path:
trunk/dudley
This commit is brought to you by the number 4934 and the tool "meld".
Merge of partially complete split world code from branch.
Revision
4869 -
Directory Listing
Modified
Mon Apr 14 10:39:22 2014 UTC
(6 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
all of paso now lives in its own namespace.
Revision
4836 -
Directory Listing
Modified
Mon Apr 7 05:51:55 2014 UTC
(6 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
"Some" SystemMatrix clean up.....
Revision
4830 -
Directory Listing
Modified
Thu Apr 3 04:45:06 2014 UTC
(6 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
Removed obsolete file, reverted verbosity of test and a bit more cleanup.
Revision
4829 -
Directory Listing
Modified
Thu Apr 3 04:02:53 2014 UTC
(6 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
checkpointing some SparseMatrix cleanup.
Revision
4821 -
Directory Listing
Modified
Tue Apr 1 04:58:33 2014 UTC
(6 years, 10 months ago)
by
sshaw
Original Path:
trunk/dudley
moved SolverOptions to c++, split into SolverOptions for the options and SolverBuddy as the state as a precursor to per-pde solving... does break some use cases (e.g. pde.getSolverOptions().DIRECT will now fail, new value access is with SolverOptions.DIRECT), examples and documentation updated to match
Revision
4817 -
Directory Listing
Modified
Fri Mar 28 08:04:09 2014 UTC
(6 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
Coupler/Connector shared ptrs.
Revision
4816 -
Directory Listing
Modified
Fri Mar 28 06:16:02 2014 UTC
(6 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
paso::SharedComponents now header-only and shared ptr managed.
Revision
4814 -
Directory Listing
Modified
Fri Mar 28 04:31:02 2014 UTC
(6 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
paso::Distribution instances are now managed by a boost::shared_ptr, methods
are all inline.
Revision
4809 -
Directory Listing
Modified
Thu Mar 27 05:52:41 2014 UTC
(6 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
Removed code duplication and moved IndexList to esysUtils header only.
Renamed AML.cpp which is old,unused code.
Revision
4803 -
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Modified
Wed Mar 26 06:52:28 2014 UTC
(6 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
Removed obsolete wrappers for malloc and friends.
Paso_Pattern -> paso::Pattern
Revision
4801 -
Directory Listing
Modified
Wed Mar 26 03:26:58 2014 UTC
(6 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
paso::Coupler and paso::Connector.
Revision
4789 -
Directory Listing
Modified
Fri Mar 21 00:30:32 2014 UTC
(6 years, 11 months ago)
by
sshaw
Original Path:
trunk/dudley
changing more awkward logic into more obvious (and correct, though i doubt a negative length ever happens) logic
Revision
4787 -
Directory Listing
Modified
Fri Mar 21 00:08:15 2014 UTC
(6 years, 11 months ago)
by
sshaw
Original Path:
trunk/dudley
changed header guard definition to match header guard check
Revision
4687 -
Directory Listing
Modified
Wed Feb 19 00:03:29 2014 UTC
(7 years ago)
by
jfenwick
Original Path:
trunk/dudley
Remove randomFill python method from ripley domains.
All random data objects (for all domain types) should be generated
using esys.escript.RandomData()
The only filtered random we have is gaussian on ripley but
it is triggered by passing the tuple as the last arg of RandomData().
While the interface is a bit more complicated (in that you always need
to pass in shape and functionspace) it does mean we have a
common interface for all domains.
Removed randomFill from DataExpanded.
The reasoning behind this is to force domains to call the util function
themselves and enforce whatever consistancy requirements they have.
Added version of blocktools to deal with 2D case in Ripley.
Use blocktools for the 2D transfers [This was cleaner than modifying the
previous implementation to deal with variable shaped points].
Note that under MPI, ripley can not generate random data (even unfiltered)
if any of its per rank dimensions is <4 elements on any side.
Unit tests for these calls are in but some extra checks still needed.
Revision
4684 -
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Modified
Tue Feb 18 01:17:02 2014 UTC
(7 years ago)
by
jduplessis
Original Path:
trunk/dudley
Removing Finley mesh import which was copied from run_linearPdeOnFinley... as it is not used.
Revision
4657 -
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Modified
Thu Feb 6 06:12:20 2014 UTC
(7 years ago)
by
jfenwick
Original Path:
trunk/dudley
I changed some files.
Updated copyright notices, added GeoComp.
Revision
4607 -
Directory Listing
Modified
Wed Dec 18 09:46:16 2013 UTC
(7 years, 2 months ago)
by
jfenwick
Original Path:
trunk/dudley
include cmath in all cases rather than math.h - the mathinf for intel on windows is still there (in part because we have no way to test if it is still relevant)
Revision
4606 -
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Modified
Wed Dec 18 08:21:25 2013 UTC
(7 years, 2 months ago)
by
jfenwick
Original Path:
trunk/dudley
Updating run_models to not call the old DarcyFlow methods
Revision
4605 -
Directory Listing
Modified
Wed Dec 18 06:05:43 2013 UTC
(7 years, 2 months ago)
by
jfenwick
Original Path:
trunk/dudley
Mantis issue #675 said
Cihan:
while merging symbolic into trunk I noticed that most dudley tests are
disabled. This happened in revision 3261 where you wrote:
"Disable some unit tests for dudley until I can fix MPI failures"
Is that fixed?
=== I'm renabling most of the test (which pass without difficulty).
But one of them appears to be out of date or something.
More investigation required.
Revision
4599 -
Directory Listing
Modified
Sun Dec 15 23:51:13 2013 UTC
(7 years, 2 months ago)
by
sshaw
Original Path:
trunk/dudley
merged 3.4.1 release changes into trunk
Revision
4576 -
Directory Listing
Modified
Mon Dec 9 23:35:30 2013 UTC
(7 years, 2 months ago)
by
sshaw
Original Path:
trunk/dudley
python3ified things, replaced mixed whitespace and xrange calls
Revision
4566 -
Directory Listing
Modified
Thu Dec 5 01:02:47 2013 UTC
(7 years, 2 months ago)
by
sshaw
Original Path:
trunk/dudley
fixed Dudley saveVTK crash on world size > 6 (mantis bug #738)
Revision
4558 -
Directory Listing
Modified
Tue Dec 3 22:37:38 2013 UTC
(7 years, 2 months ago)
by
jfenwick
Original Path:
trunk/dudley
Moving MeshAdapter constructor call out of smartptr constructor. I think a throw in there would lead to undefined behaviour
Revision
4557 -
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Modified
Tue Dec 3 12:53:38 2013 UTC
(7 years, 2 months ago)
by
caltinay
Original Path:
trunk/dudley
Fixed boost/intel issue in dudley and synced options file with module on
savanna.
Revision
4521 -
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Modified
Mon Aug 26 11:51:30 2013 UTC
(7 years, 6 months ago)
by
jfenwick
Original Path:
trunk/dudley
Remove bool_t
Part of random.
Revision
4505 -
Directory Listing
Modified
Tue Jul 23 02:09:45 2013 UTC
(7 years, 7 months ago)
by
jfenwick
Original Path:
trunk/dudley
Hopefully addresses mantis721
Revision
4480 -
Directory Listing
Modified
Mon Jun 24 05:09:52 2013 UTC
(7 years, 8 months ago)
by
caltinay
Original Path:
trunk/dudley
More valgrind suppressions and memory leak fixes identified in various places.
Revision
4478 -
Directory Listing
Modified
Thu Jun 20 06:34:02 2013 UTC
(7 years, 8 months ago)
by
caltinay
Original Path:
trunk/dudley
Moved appendRankToFilename to header within namespace to remove code duplication
and fixed memory leaks this way.
Revision
4406 -
Directory Listing
Modified
Tue May 14 02:54:09 2013 UTC
(7 years, 9 months ago)
by
caltinay
Original Path:
trunk/dudley
Removed references to pyvisi which disappeared a few releases ago...
Revision
4398 -
Directory Listing
Modified
Thu May 9 08:42:44 2013 UTC
(7 years, 9 months ago)
by
jfenwick
Original Path:
trunk/dudley
support for supressing doco subpackages. fiddling with one of the imports to try to reduce the number of places where Data appears. Seriously it looks like we have 8 different Data classes
Revision
4348 -
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Modified
Tue Apr 2 07:15:43 2013 UTC
(7 years, 10 months ago)
by
caltinay
Original Path:
trunk/dudley
Reapply some of the spelling fixes that got lost....
Revision
4346 -
Directory Listing
Modified
Tue Apr 2 04:46:45 2013 UTC
(7 years, 10 months ago)
by
jfenwick
Original Path:
trunk/dudley
Bringing the changes from doubleplusgood branch.
Can't merge directly because svn doesn't transfer changes to renamed files (mutter grumble).
Revision
4255 -
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Modified
Wed Feb 27 03:06:21 2013 UTC
(7 years, 11 months ago)
by
jfenwick
Original Path:
trunk/dudley
Hopefully, this will address the interpolation problems.
New canInterpolate() function exposed to python which calls probeInterpolation
AbstractDomain now has an additional virtual.
preferredIntrpolationOnDomain()
This will return 0 if interpolation is impossible, 1 if possible and preferred.
It will return -1 if interpolation is possible and preferred in the
oposite direction.
A value of -1 does not say that the proposed interpolation is possible or not.
Rather it indicates "please use the other way".
If you really _need_ to test it that way, use probeInterpolationOnDomain
Revision
4192 -
Directory Listing
Modified
Tue Feb 12 00:28:47 2013 UTC
(8 years ago)
by
gross
Original Path:
trunk/dudley
problem with nc reader for dudley and finley fixed: the reader builds now the taginuse lists.
Revision
4114 -
Directory Listing
Modified
Fri Dec 14 04:24:46 2012 UTC
(8 years, 2 months ago)
by
caltinay
Original Path:
trunk/dudley
Time to remove deprecated saveVTK/DX methods from Data and Domain.
Revision
4078 -
Directory Listing
Modified
Fri Nov 16 07:50:49 2012 UTC
(8 years, 3 months ago)
by
jfenwick
Original Path:
trunk/dudley
Unit tests for binary install with no scons and no source tree.
Script for installing and testing a .deb within a chroot.
Revision
4035 -
Directory Listing
Modified
Thu Oct 25 03:10:14 2012 UTC
(8 years, 4 months ago)
by
caltinay
Original Path:
trunk/dudley
Tweaked scons files so tests work even when specifying non-absolute build_dir.
Revision
4024 -
Directory Listing
Modified
Mon Oct 22 06:11:29 2012 UTC
(8 years, 4 months ago)
by
gross
Original Path:
trunk/dudley
tag testing for finley and dudley files added.
Revision
4019 -
Directory Listing
Modified
Thu Oct 11 08:12:55 2012 UTC
(8 years, 4 months ago)
by
jfenwick
Original Path:
trunk/dudley
More tabbing errors,
range/xrange
...
Revision
3996 -
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Modified
Thu Sep 27 00:54:10 2012 UTC
(8 years, 5 months ago)
by
caltinay
Original Path:
trunk/dudley
Don't test saveCSV for cases it does not work with.
Revision
3994 -
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Modified
Wed Sep 26 07:38:38 2012 UTC
(8 years, 5 months ago)
by
jfenwick
Original Path:
trunk/dudley
Install doco still needs work.
Removing some of the weird:
esys.finley.finley
type modules
Revision
3993 -
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Modified
Wed Sep 26 07:00:55 2012 UTC
(8 years, 5 months ago)
by
caltinay
Original Path:
trunk/dudley
Addressing mantis 651. Test for finley will fail under MPI since there is
sth wrong with the way ReducedContinuousFunction samples are interrogated.
Revision
3991 -
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Modified
Tue Sep 25 23:52:22 2012 UTC
(8 years, 5 months ago)
by
caltinay
Original Path:
trunk/dudley
Updated doxygen cfg file and made a few first changes to doco.
Revision
3982 -
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Modified
Fri Sep 21 03:23:22 2012 UTC
(8 years, 5 months ago)
by
jfenwick
Original Path:
trunk/dudley
More edits + removing pyvisi from trunk
Revision
3981 -
Directory Listing
Modified
Fri Sep 21 02:47:54 2012 UTC
(8 years, 5 months ago)
by
jfenwick
Original Path:
trunk/dudley
First pass of updating copyright notices
Revision
3978 -
Directory Listing
Modified
Thu Sep 20 04:36:17 2012 UTC
(8 years, 5 months ago)
by
caltinay
Original Path:
trunk/dudley
Make sympy optional as it was intended initially. Trying to instantiate anything
from symbolic will raise an exception if sympy is not available.
Revision
3975 -
Directory Listing
Modified
Thu Sep 20 01:54:06 2012 UTC
(8 years, 5 months ago)
by
caltinay
Original Path:
trunk/dudley
Merged symbolic branch into trunk. Curious what daniel and spartacus have to
say...
Revision
3934 -
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Modified
Fri Jul 13 09:01:16 2012 UTC
(8 years, 7 months ago)
by
jfenwick
Original Path:
trunk/dudley
Added unit test for tagreader
Revision
3920 -
Directory Listing
Modified
Thu Jul 5 03:42:30 2012 UTC
(8 years, 7 months ago)
by
jfenwick
Original Path:
trunk/dudley
Copied over tagname reading stuff from finley
Revision
3914 -
Directory Listing
Modified
Wed Jun 20 04:51:47 2012 UTC
(8 years, 8 months ago)
by
jfenwick
Original Path:
trunk/dudley
Only allow setX from ContinuousFunctions.
This addresses mantis 644.
Revision
3892 -
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Modified
Tue Apr 10 08:57:23 2012 UTC
(8 years, 10 months ago)
by
jfenwick
Original Path:
trunk/dudley
Merged changes across from the attempt2 branch.
This version builds and passes python2 tests.
It also passes most python3 tests.
Revision
3793 -
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Modified
Wed Feb 1 07:39:43 2012 UTC
(9 years ago)
by
gross
Original Path:
trunk/dudley
new implementation of FCT solver with some modifications to the python interface
Revision
3792 -
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Modified
Wed Feb 1 06:16:25 2012 UTC
(9 years ago)
by
caltinay
Original Path:
trunk/dudley
Merged ripley rectangular domain into trunk.
Revision
3739 -
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Modified
Tue Dec 13 00:48:26 2011 UTC
(9 years, 2 months ago)
by
caltinay
Original Path:
trunk/dudley
Ok, the python wrappers do use esysUtils for the exception translator.
Anything else?
Revision
3737 -
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Modified
Tue Dec 13 00:04:39 2011 UTC
(9 years, 2 months ago)
by
caltinay
Original Path:
trunk/dudley
Reordered and removed superfluous libraries from link lines. Hope W32 likes
that.
Revision
3736 -
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Modified
Mon Dec 12 01:26:51 2011 UTC
(9 years, 2 months ago)
by
jfenwick
Original Path:
trunk/dudley
Fixed apparent multiple instances of Esys
Revision
3729 -
Directory Listing
Modified
Thu Dec 8 06:46:49 2011 UTC
(9 years, 2 months ago)
by
jfenwick
Original Path:
trunk/dudley
Fixed mistake in Finley_Assemble_PDE and the dudley equivalent.
Cihan - you might want to look to see if Ripley is affected
Revision
3681 -
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Modified
Fri Nov 18 04:54:15 2011 UTC
(9 years, 3 months ago)
by
caltinay
Original Path:
trunk/dudley
Moved implementation of getTransportTypeId() and getSystemMatrixTypeId() into
pasowrap.
Revision
3637 -
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Modified
Fri Oct 21 04:29:33 2011 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk/dudley
Fixed memory leaks in loadMesh() for dudley and finley.
Revision
3628 -
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Modified
Wed Oct 19 02:09:36 2011 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk/dudley
Prepend our libraries instead of appending. This should fix HYPRE link
issue on epic.
Revision
3603 -
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Modified
Mon Sep 19 03:42:53 2011 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk/dudley
Fixed some unused var errors in non-mpi build.
Revision
3597 -
Directory Listing
Modified
Thu Sep 15 06:03:17 2011 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk/dudley
Switching to external cppunit:
-removed tools/CppUnitTest
-updated scons script and files
-updated tests to changed API
-updated readme
Bumped scons options file version to 201. Additions:
-cppunit*
-boomeramg*
-vsl_random
Revision
3578 -
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Modified
Mon Sep 5 23:18:45 2011 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk/dudley
Missing dependence added (?) and typo in test files fixed.
Revision
3576 -
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Modified
Mon Sep 5 06:33:20 2011 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk/dudley
Fixed two more instances of macro-dependent unused vars.
Revision
3551 -
Directory Listing
Modified
Fri Aug 19 03:53:41 2011 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk/dudley
Changing unit test calls to use non deprecated forms (python2.7)
fixes bug #568
Revision
3522 -
Directory Listing
Modified
Tue May 24 00:57:58 2011 UTC
(9 years, 9 months ago)
by
gross
Original Path:
trunk/dudley
(almost) full support for Point elements
Revision
3508 -
Directory Listing
Modified
Fri May 13 04:15:29 2011 UTC
(9 years, 9 months ago)
by
lgao
Original Path:
trunk/dudley
Add Boomer AMG as a new preconditioner
Can be used by .setPreconditioner(SolverOptions.BOOMERAMG)
and the following parallel coarsening method can be
used together with Boomer AMG preconditioner:
.setCoarsening(SolverOptions.CIJP_FIXED_RANDOM_COARSENING)
.setCoarsening(SolverOptions.CIJP_COARSENING)
.setCoarsening(SolverOptions.FALGOUT_COARSENING)
.setCoarsening(SolverOptions.PMIS_COARSENING)
.setCoarsening(SolverOptions.HMIS_COARSENING)
Note that Boomer AMG is only available when MPI is enabled.
Revision
3490 -
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Modified
Wed Mar 30 02:24:33 2011 UTC
(9 years, 11 months ago)
by
caltinay
Original Path:
trunk/dudley
More gcc-4.6 fixes (mostly initialized-but-unused-var warnings)
Revision
3454 -
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Modified
Tue Jan 25 04:00:29 2011 UTC
(10 years, 1 month ago)
by
caltinay
Original Path:
trunk/dudley
Fixed some minor doxygen issues.
Revision
3440 -
Directory Listing
Modified
Fri Jan 14 00:04:53 2011 UTC
(10 years, 1 month ago)
by
gross
Original Path:
trunk/dudley
a second AMG interpolation implemented
Revision
3432 -
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Modified
Fri Jan 7 01:32:07 2011 UTC
(10 years, 1 month ago)
by
jfenwick
Original Path:
trunk/dudley
Made import statements a bit more specific to clean up the epydoc
Revision
3402 -
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Modified
Tue Dec 7 07:36:12 2010 UTC
(10 years, 2 months ago)
by
gross
Original Path:
trunk/dudley
AMG support now block size > 3 (requires clapack or MKL).
additional diagnostics for AMG
Revision
3400 -
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Modified
Mon Dec 6 02:23:07 2010 UTC
(10 years, 2 months ago)
by
caltinay
Original Path:
trunk/dudley
Moved vtkCellType.h to weipa where it belongs now.
Revision
3368 -
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Modified
Fri Nov 19 05:59:46 2010 UTC
(10 years, 3 months ago)
by
jfenwick
Original Path:
trunk/dudley
3d interpolateTable support.
New more generic interface for table interpolation.
tests and doco updated
Revision
3355 -
Directory Listing
Modified
Tue Nov 16 06:35:06 2010 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk/dudley
Fixed building with boost < 1.40 by
- removing the saveVTK method from dudley's MeshAdapter completely
(no point introducing it now when we are trying to get rid of it soon)
- adding a helper function to weipa's python layer which can be called from C++
with older boost versions.
Revision
3349 -
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Modified
Mon Nov 15 05:09:56 2010 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk/dudley
escript now supports out-of-tree builds.
All build and test files are now created under a user-definable build_dir
directory.
This also fixes issue 291.
Removed most svn:ignore props since they are no longer required.
Revision
3346 -
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Modified
Fri Nov 12 01:19:02 2010 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk/dudley
Replaced usage of esys.escript.util.saveVTK by weipa.saveVTK in all python
scripts.
Revision
3345 -
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Modified
Thu Nov 11 23:51:45 2010 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk/dudley
Moved dudley saveVTK tests to weipa and removed unneeded files.
Revision
3344 -
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Modified
Thu Nov 11 23:26:52 2010 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk/dudley
Phew!
-escript, finley, and dudley now uses weipa's saveVTK implementation
-moved tests from finley to weipa accordingly; dudley still to do
-rebaselined all test files
-fixed a few issues in weipa.saveVTK, e.g. saving metadata without schema
-added a deprecation warning to esys.escript.util.saveVTK
-todo: change doco, tests and other places to use weipa.saveVTK
Revision
3317 -
Directory Listing
Modified
Thu Oct 28 00:50:41 2010 UTC
(10 years, 4 months ago)
by
caltinay
Original Path:
trunk/dudley
Removed bogus mpi.h includes, replaced others by our esysUtils wrapper
and rearranged so that the wrapper always comes before netcdf which fixes
linking problems when disabling mpi on systems with netCDF 4.x.
Revision
3312 -
Directory Listing
Modified
Tue Oct 26 07:54:58 2010 UTC
(10 years, 4 months ago)
by
gross
Original Path:
trunk/dudley
last step for a clean up version of the AMG
Revision
3269 -
Directory Listing
Modified
Wed Oct 13 03:21:50 2010 UTC
(10 years, 4 months ago)
by
jfenwick
Original Path:
trunk/dudley
Fixed some intel compiler warnings.
Put linearPDEs back the way it was and present a common interface for dudley and finley (as per Lutz)
Revision
3264 -
Directory Listing
Modified
Tue Oct 12 04:40:06 2010 UTC
(10 years, 4 months ago)
by
jfenwick
Original Path:
trunk/dudley
Minor changes to avoid optimiser bug in intel-10
Revision
3261 -
Directory Listing
Modified
Mon Oct 11 04:25:42 2010 UTC
(10 years, 4 months ago)
by
jfenwick
Original Path:
trunk/dudley
Disable some unit tests for dudley until I can fix MPI failures
Revision
3254 -
Directory Listing
Modified
Thu Oct 7 06:33:09 2010 UTC
(10 years, 4 months ago)
by
caltinay
Original Path:
branches/domexper/dudley
Back to C90 since M$ still won't support mixed code and declarations.
This should be a no-op.
Revision
3253 -
Directory Listing
Modified
Thu Oct 7 05:34:33 2010 UTC
(10 years, 4 months ago)
by
caltinay
Original Path:
branches/domexper/dudley
Corrected some merge issues, fixed another name clash that caused a segfault
in tests, changed remaining PASO_MPI's to ESYS_MPI and added -std=c99 to
gcc's default options.
Revision
3248 -
Directory Listing
Modified
Wed Oct 6 08:17:18 2010 UTC
(10 years, 4 months ago)
by
caltinay
Original Path:
branches/domexper/dudley
Added dudley support to weipa. Needs test cases but works with escript's
DataManager to save Silo+VTK files.
Revision
3247 -
Directory Listing
Modified
Wed Oct 6 05:53:06 2010 UTC
(10 years, 4 months ago)
by
caltinay
Original Path:
branches/domexper/dudley
Fixed name clashes between dudley and finley so both can be used
simultaneously.
Revision
3239 -
Directory Listing
Modified
Tue Oct 5 05:31:20 2010 UTC
(10 years, 4 months ago)
by
jfenwick
Original Path:
branches/domexper/dudley
Put the tsunami example back to use finley.
Moved a bunch of method signatures up into the AbstractDomain class
Revision
3234 -
Directory Listing
Modified
Mon Oct 4 01:46:30 2010 UTC
(10 years, 4 months ago)
by
jfenwick
Original Path:
branches/domexper/dudley
Some subdirs need to have changes pulled over but all of the unit tests
except for modellib appear to work
Revision
3173 -
Directory Listing
Modified
Fri Sep 10 03:24:38 2010 UTC
(10 years, 5 months ago)
by
jfenwick
Original Path:
branches/domexper/dudley
Indented Assemble_jacobeans consistantly.
Completed the first pass on the remainder of the functions in Assemble_jacobeans.
Revision
3171 -
Directory Listing
Modified
Fri Sep 10 00:31:11 2010 UTC
(10 years, 5 months ago)
by
jfenwick
Original Path:
branches/domexper/dudley
Remove some contact jacobean functions.
Assemble_jacobeans_2D_M1D_E2D finished first pass
Revision
3090 -
Directory Listing
Modified
Wed Aug 11 00:51:28 2010 UTC
(10 years, 6 months ago)
by
jfenwick
Original Path:
branches/domexper/dudley
Removed:
DUDLEY_CONTACT_ELEMENTS_1
DUDLEY_CONTACT_ELEMENTS_2
DUDLEY_REDUCED_CONTACT_ELEMENTS_1
DUDLEY_REDUCED_CONTACT_ELEMENTS_2
escript tests now query if the domain supports contact elements
before trying to use them.
Revision
3078 -
Directory Listing
Modified
Tue Aug 3 03:12:16 2010 UTC
(10 years, 6 months ago)
by
jfenwick
Original Path:
trunk/finley
Switched the build_dir keyword param to variant_dir.
Should fix issue 525.
Revision
3051 -
Directory Listing
Modified
Tue Jun 29 00:45:49 2010 UTC
(10 years, 8 months ago)
by
lgao
Original Path:
trunk/finley
Hybrid MPI/OpenMP versioned Gauss_Seidel preconditioner is added.
To use it, use "SolverOptions.GAUSS_SEIDEL_MPI" in python script.
Revision
3046 -
Directory Listing
Modified
Tue Jun 22 08:01:55 2010 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk/finley
some examples for a simple subduction model
Revision
3043 -
Directory Listing
Modified
Fri Jun 18 04:45:14 2010 UTC
(10 years, 8 months ago)
by
artak
Original Path:
trunk/finley
Problem with latest MKL should be fixed now. The problem was solving unrolled block matrix with MKL.
Revision
3028 -
Directory Listing
Modified
Thu May 13 03:41:27 2010 UTC
(10 years, 9 months ago)
by
gross
Original Path:
trunk/finley
a new test problem (doesn't use unit testing)
Revision
3027 -
Directory Listing
Modified
Wed May 12 05:26:09 2010 UTC
(10 years, 9 months ago)
by
gross
Original Path:
trunk/finley
some little fixes in an old script
Revision
2999 -
Directory Listing
Modified
Fri Mar 26 00:00:39 2010 UTC
(10 years, 11 months ago)
by
artak
Original Path:
trunk/finley
NE set to 10 elemennt, because 6 is too small for mpi=8 job.
Revision
2989 -
Directory Listing
Modified
Thu Mar 18 01:45:55 2010 UTC
(10 years, 11 months ago)
by
gross
Original Path:
trunk/finley
- bug in error handling in the case of lumped mass matrix fixed.
- switched back to rowsum lumping as there are problems with HRZ lumping for order 2
Revision
2940 -
Directory Listing
Modified
Fri Feb 19 00:38:45 2010 UTC
(11 years ago)
by
caltinay
Original Path:
trunk/finley
Minor potential optimization: prefer empty() over size()==0.
Revision
2934 -
Directory Listing
Modified
Fri Feb 12 05:09:06 2010 UTC
(11 years ago)
by
gross
Original Path:
trunk/finley
gmsh reader supports second order recs and hex now
Revision
2898 -
Directory Listing
Modified
Mon Feb 1 01:23:46 2010 UTC
(11 years ago)
by
caltinay
Original Path:
trunk/finley
Reverted the move of system_dep.h since it didn't solve the problem nicely.
Created a wrapper class for the needed functionality instead.
Revision
2897 -
Directory Listing
Modified
Mon Feb 1 01:22:50 2010 UTC
(11 years ago)
by
lgao
Original Path:
trunk/finley
Fix the Parmetis problem related with Mantis issue 0000480.
In case there is any node with no vertex, Parmetis will not
be used and a message will be printed.
Revision
2895 -
Directory Listing
Modified
Fri Jan 29 04:58:16 2010 UTC
(11 years ago)
by
caltinay
Original Path:
trunk/finley
Moved finley's system_dep.h file up to the C level to be able to export two
functions that are used by the dataexporter. Changed include paths and C++
style comments accordingly.
Revision
2881 -
Directory Listing
Modified
Thu Jan 28 02:03:15 2010 UTC
(11 years, 1 month ago)
by
jfenwick
Original Path:
trunk/finley
Don't panic.
Updating copyright stamps
Revision
2867 -
Directory Listing
Modified
Fri Jan 22 06:28:02 2010 UTC
(11 years, 1 month ago)
by
gross
Original Path:
trunk/finley
now option -i is used if no script is given
Revision
2857 -
Directory Listing
Modified
Mon Jan 18 07:44:42 2010 UTC
(11 years, 1 month ago)
by
gross
Original Path:
trunk/finley
test for ApproximationOrder added and Transport type problem now choose reduced when necessary only.
Revision
2856 -
Directory Listing
Modified
Mon Jan 18 04:14:37 2010 UTC
(11 years, 1 month ago)
by
gross
Original Path:
trunk/finley
FunctionSpaces provide now some information about their approximation order.
Revision
2850 -
Directory Listing
Modified
Fri Jan 15 07:14:25 2010 UTC
(11 years, 1 month ago)
by
gross
Original Path:
trunk/finley
the powerlaw is working again. tests are switched on again.
Revision
2842 -
Directory Listing
Modified
Thu Jan 14 05:42:02 2010 UTC
(11 years, 1 month ago)
by
caltinay
Original Path:
trunk/finley
Changed domain::dump() to write out NodeDistribution & DofDistribution even if
the current process has 0 nodes.
Revision
2841 -
Directory Listing
Modified
Thu Jan 14 01:02:56 2010 UTC
(11 years, 1 month ago)
by
jfenwick
Original Path:
trunk/finley
Unit tests for 2838 and adding setTags variant which takes a string instead of a tag num.
Revision
2828 -
Directory Listing
Modified
Tue Dec 22 01:24:40 2009 UTC
(11 years, 2 months ago)
by
artak
Original Path:
trunk/finley
Smoother for AMG now can be selected from python. Now only Jacobi and Gauss-Seidel are available as smoothers.
Revision
2816 -
Directory Listing
Modified
Thu Dec 10 02:09:43 2009 UTC
(11 years, 2 months ago)
by
artak
Original Path:
trunk/finley
Standard coarsening is added to options list.
Revision
2814 -
Directory Listing
Modified
Tue Dec 8 01:50:29 2009 UTC
(11 years, 2 months ago)
by
caltinay
Original Path:
trunk/finley
Removed minor code duplication.
Revision
2799 -
Directory Listing
Modified
Thu Dec 3 01:35:08 2009 UTC
(11 years, 2 months ago)
by
jfenwick
Original Path:
trunk/finley
resolveGroup function added to python.
Unit tests for resolveGroup, resolve and delay.
Revision
2779 -
Directory Listing
Modified
Thu Nov 26 03:51:15 2009 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk/finley
Fixed more instances of garbage=cstring+integer errors (d'oh!)
Revision
2778 -
Directory Listing
Modified
Thu Nov 26 01:50:30 2009 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk/finley
Fixed unintended pointer arithmetic with c-strings in MeshAdapter::dump() and
shortened error messages while being at it.
Revision
2770 -
Directory Listing
Modified
Wed Nov 25 01:24:51 2009 UTC
(11 years, 3 months ago)
by
jfenwick
Original Path:
trunk/finley
Removed buffer implementation of Lazy.
Removed supporting Alloc/Free Sample buffer calls.
Revision
2760 -
Directory Listing
Modified
Thu Nov 19 05:22:45 2009 UTC
(11 years, 3 months ago)
by
artak
Original Path:
trunk/finley
The first version of the new AMG preconditioner. It need a lot of polishing for efficiency. Old AMG now called AMLI preconditioner.
Revision
2755 -
Directory Listing
Modified
Wed Nov 18 23:19:32 2009 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk/finley
Reverted changes to Mesh_read from last commit. They break compilation with
MPI and seem unintentional.
Revision
2754 -
Directory Listing
Modified
Wed Nov 18 07:44:26 2009 UTC
(11 years, 3 months ago)
by
gross
Original Path:
trunk/finley
tests for macro elements in saveVTK added.
Revision
2752 -
Directory Listing
Modified
Wed Nov 18 06:01:18 2009 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk/finley
Fixed compilation error in mesh reader when using MPI.
Revision
2751 -
Directory Listing
Modified
Wed Nov 18 00:30:47 2009 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk/finley
Removed stray forward declaration.
Revision
2750 -
Directory Listing
Modified
Tue Nov 17 23:39:20 2009 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk/finley
Fixed some compilation errors with OpenMP introduced in last commit.
Revision
2748 -
Directory Listing
Modified
Tue Nov 17 07:32:59 2009 UTC
(11 years, 3 months ago)
by
gross
Original Path:
trunk/finley
Macro elements are implemented now. VTK writer for macro elements still needs testing.
Revision
2744 -
Directory Listing
Modified
Mon Nov 16 23:45:55 2009 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk/finley
SaveVTK: exponent could have 3 digits so reserve enough space.
Revision
2743 -
Directory Listing
Modified
Mon Nov 16 05:28:47 2009 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk/finley
Corrected memory allocation size for tensors in saveVTK. Fixes issue 460.
Revision
2742 -
Directory Listing
Modified
Thu Nov 12 06:03:37 2009 UTC
(11 years, 3 months ago)
by
jfenwick
Original Path:
trunk/finley
Merging changes from the lapack branch.
The inverse() operation has been moved into c++. [No lazy support for this operation yet.]
Optional Lapack support has been added for matrices larger than 3x3.
service0 is set to use mkl_lapack.
Revision
2732 -
Directory Listing
Modified
Mon Oct 26 01:11:31 2009 UTC
(11 years, 4 months ago)
by
jfenwick
Original Path:
trunk/finley
Fixed segfault in debug+omp tests.
Cause:
variable used in parallel section not declared shared.
Revision
2730 -
Directory Listing
Modified
Thu Oct 22 01:50:27 2009 UTC
(11 years, 4 months ago)
by
artak
Original Path:
trunk/finley
order member variable added to the tests.
Revision
2725 -
Directory Listing
Modified
Wed Oct 21 23:44:06 2009 UTC
(11 years, 4 months ago)
by
artak
Original Path:
trunk/finley
AMG unit tests are disabled for 2-nd order elements.
Revision
2722 -
Directory Listing
Modified
Fri Oct 16 06:45:01 2009 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk/finley
First steps towards macro elements. at the monent a macro element is identical to its counterpart of 2nd order.
Revision
2676 -
Directory Listing
Modified
Mon Sep 21 08:06:37 2009 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk/finley
FaultSystem: MaxValue and MinValue return now a Locator. This makes it possible to extract values of from other data objects at the location of the min/max value
Revision
2675 -
Directory Listing
Modified
Mon Sep 21 02:32:17 2009 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk/finley
getMinValue added to the fault system.
Revision
2663 -
Directory Listing
Modified
Tue Sep 15 06:04:44 2009 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk/finley
finally there is a 3D version for the fault system class
Revision
2654 -
Directory Listing
Modified
Tue Sep 8 07:11:12 2009 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk/finley
2D fault systems are now working. 3D still needs work.
Revision
2653 -
Directory Listing
Modified
Tue Sep 8 04:26:30 2009 UTC
(11 years, 5 months ago)
by
jfenwick
Original Path:
trunk/finley
Fix bug in maxGlobalDataPoint and minGlobalDataPoint.
They now give the correct answers and the datapoint ids returned are globally
correct.
Removed some #defines from before COW
Removed hasNoSamples() - I don't trust myself to use that properly let alone anybody else.
Revision
2647 -
Directory Listing
Modified
Fri Sep 4 05:25:25 2009 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk/finley
fault system add. There is still an example for the usage missing.
Revision
2646 -
Directory Listing
Modified
Fri Sep 4 00:13:00 2009 UTC
(11 years, 5 months ago)
by
jfenwick
Original Path:
trunk/finley
Unit tests and user doco for interpolation and saveCSV
Revision
2644 -
Directory Listing
Modified
Wed Sep 2 04:14:03 2009 UTC
(11 years, 5 months ago)
by
jfenwick
Original Path:
trunk/finley
Add unit tests for saveDataCSV which should be ready for use now.
Keyword args are now output in sorted order.
Removed some unneeded functions.
Revision
2641 -
Directory Listing
Modified
Mon Aug 31 07:41:49 2009 UTC
(11 years, 5 months ago)
by
jfenwick
Original Path:
trunk/finley
Fixed some of my stupids related to MPI compile errors.
Revision
2635 -
Directory Listing
Modified
Thu Aug 27 04:54:41 2009 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk/finley
A bunch of changes related to saveDataCSV.
[Not completed or unit tested yet]
Added saveDataCSV to util.py
AbstractDomain (and MeshAdapter) have a commonFunctionSpace method to
take a group of FunctionSpaces and return something they can all be interpolated to.
Added pointToStream() in DataTypes to help print points.
added actsConstant() to data - required because DataConstant doesn't store samples the same way other Data do.
Revision
2628 -
Directory Listing
Modified
Tue Aug 25 03:50:00 2009 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk/finley
Fixed linkage on getTestDomainFunctionSpace.
added Data.interpolateTable to perform 2D interpolation.
It needs better unit tests though.
Revision
2625 -
Directory Listing
Modified
Fri Aug 21 06:30:25 2009 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk/finley
Merging changes from new doco branch.
All docstrings are now in reStructured text.
A few email addresses have been fixes as well.
Revision
2620 -
Directory Listing
Modified
Thu Aug 20 06:24:00 2009 UTC
(11 years, 6 months ago)
by
gross
Original Path:
trunk/finley
some small additions to pycad to make life a bit easier.
Revision
2596 -
Directory Listing
Modified
Thu Aug 6 03:09:03 2009 UTC
(11 years, 6 months ago)
by
lgao
Original Path:
trunk/finley
Add new diagnostic information: "net time" (the execution time of solver, excluding the setup time for solver and the execution time of preconditioner)
Revision
2595 -
Directory Listing
Modified
Thu Aug 6 00:49:09 2009 UTC
(11 years, 6 months ago)
by
gross
Original Path:
trunk/finley
there was wrong test which triggered an excpetion in some cases where things were actually right
Revision
2564 -
Directory Listing
Modified
Tue Jul 28 04:46:38 2009 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk/finley
reduced PDE solutions added to topography
Revision
2563 -
Directory Listing
Modified
Tue Jul 28 03:50:45 2009 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk/finley
reengineered version of the mountain class so it becomes easier to use for the convection code
Revision
2561 -
Directory Listing
Modified
Mon Jul 27 07:38:45 2009 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk/finley
small bug in the calculation of the errors fixed.
Revision
2551 -
Directory Listing
Modified
Thu Jul 23 09:19:15 2009 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk/finley
a problem with the sparse matrix unrolling fixed.
Revision
2549 -
Directory Listing
Modified
Mon Jul 20 06:43:47 2009 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk/finley
Remainder of copyright date fixes
Revision
2534 -
Directory Listing
Modified
Thu Jul 16 06:49:19 2009 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk/finley
Changed examples, tests and tutorials to save VTK files as .vtu instead .xml.
Visit doesn't know what to do with xml's and vtu is the proper extension
anyway.
Revision
2533 -
Directory Listing
Modified
Wed Jul 15 05:57:01 2009 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk/finley
finley delivers now a status identifier of the mesh.
Revision
2524 -
Directory Listing
Modified
Wed Jul 8 00:39:26 2009 UTC
(11 years, 7 months ago)
by
artak
Original Path:
trunk/finley
Minimum size of the coarsest level matrix option added to solver options
Revision
2521 -
Directory Listing
Modified
Tue Jul 7 00:08:58 2009 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk/finley
Modified Lazy so that resolving a single sample uses the node cache method.
Fixed some doxygen problems.
Revision
2519 -
Directory Listing
Modified
Mon Jul 6 00:43:08 2009 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk/finley
Correcting some doxygen errors
Revision
2518 -
Directory Listing
Modified
Fri Jul 3 07:43:11 2009 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk/finley
bug in setNewX fixed: now it is made sure that the FunctionSpace of the new coordinates is correct.
Revision
2502 -
Directory Listing
Modified
Tue Jun 30 05:49:22 2009 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk/finley
tests for examples added. utest is not working yet.
Revision
2487 -
Directory Listing
Modified
Tue Jun 23 04:26:07 2009 UTC
(11 years, 8 months ago)
by
jfenwick
Original Path:
trunk/finley
Fixed const-ness on some return values.
Null-Domain now reports tag one as being in use.
Revision
2484 -
Directory Listing
Modified
Mon Jun 22 04:22:19 2009 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk/finley
numarray removed from docu; Locator revised.
Revision
2474 -
Directory Listing
Modified
Tue Jun 16 06:32:15 2009 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk/finley
linearPDEs has is now using the SolverOptions class to talk to PASO
Revision
2455 -
Directory Listing
Modified
Wed Jun 3 03:29:07 2009 UTC
(11 years, 8 months ago)
by
jfenwick
Original Path:
trunk/finley
Merging changes from numpy branch.
Revision
2445 -
Directory Listing
Modified
Fri May 29 03:23:25 2009 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk/finley
some improvement on convection which ios now working again
Revision
2438 -
Directory Listing
Modified
Tue May 26 02:26:52 2009 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk/finley
new version of power law (blame Hans)
Revision
2432 -
Directory Listing
Modified
Wed May 20 06:06:20 2009 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk/finley
power law and incompressible flow is running now
Revision
2425 -
Directory Listing
Modified
Thu May 14 09:06:35 2009 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk/finley
bug in getListOfTags fixed and some tested added
Revision
2421 -
Directory Listing
Modified
Thu May 14 02:29:06 2009 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk/finley
vtk writer supports now meta data and meta data schema
Revision
2419 -
Directory Listing
Modified
Thu May 14 01:56:18 2009 UTC
(11 years, 9 months ago)
by
jfenwick
Original Path:
trunk/finley
Use os.path.join instead of os.sep in tests
If you can read this message it means svn commit mails are working again.
... Or you are looking at the logs
Revision
2416 -
Directory Listing
Modified
Wed May 13 06:03:59 2009 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk/finley
* fix Windows MPI case: export system variables
* define ESCRIPT_NUM_PROC and ESCRIPT_NUM_NODES
* cleanup using os.path.join()
Revision
2385 -
Directory Listing
Modified
Wed Apr 15 03:52:38 2009 UTC
(11 years, 10 months ago)
by
gross
Original Path:
trunk/finley
two fixes dealing with zero samples under MPI
Revision
2368 -
Directory Listing
Modified
Mon Apr 6 05:05:35 2009 UTC
(11 years, 10 months ago)
by
gross
Original Path:
trunk/finley
some fixes for MKL and Mpisize>1
Revision
2344 -
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Modified
Mon Mar 30 02:13:58 2009 UTC
(11 years, 11 months ago)
by
jfenwick
Original Path:
trunk/finley
Change __url__ to launchpad site
Revision
2337 -
Directory Listing
Modified
Thu Mar 26 07:07:42 2009 UTC
(11 years, 11 months ago)
by
gross
Original Path:
trunk/finley
Transport class uses now useBackwardEuler rather than the mysterious theta.
Revision
2330 -
Directory Listing
Modified
Mon Mar 23 01:18:03 2009 UTC
(11 years, 11 months ago)
by
artak
Original Path:
trunk/finley
RILU changed to Jacobi in accordance with mantis bug reported a while ago
Revision
2325 -
Directory Listing
Modified
Thu Mar 19 05:32:13 2009 UTC
(11 years, 11 months ago)
by
gross
Original Path:
trunk/finley
tests for Lame equation added.
Revision
2320 -
Directory Listing
Modified
Thu Mar 19 03:40:16 2009 UTC
(11 years, 11 months ago)
by
gross
Original Path:
trunk/finley
some modifictaions to make sure that Mesh_merge.c Mesh_glueFaces.c Mesh_joinFaces.c reject to work under MPI
Revision
2319 -
Directory Listing
Modified
Thu Mar 19 03:19:41 2009 UTC
(11 years, 11 months ago)
by
gross
Original Path:
trunk/finley
some more work on tests on MPI
Revision
2311 -
Directory Listing
Modified
Mon Mar 16 23:00:08 2009 UTC
(11 years, 11 months ago)
by
jfenwick
Original Path:
trunk/finley
Fixed a bug causing Mac crashes.
Revision
2310 -
Directory Listing
Modified
Mon Mar 16 04:07:43 2009 UTC
(11 years, 11 months ago)
by
gross
Original Path:
trunk/finley
some modifications to the test to fix a problem cased by reordering in MPI
Revision
2308 -
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Modified
Mon Mar 16 01:20:56 2009 UTC
(11 years, 11 months ago)
by
gross
Original Path:
trunk/finley
size_t may be 64 bits which is incompatible to MPI_INT. This problem is fixed by inserting a cast in Mesh_read.c.
Moreover a fix has been added making sure that gmsh and triangle are executed on one processor only.
Revision
2256 -
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Modified
Mon Feb 9 06:20:32 2009 UTC
(12 years ago)
by
jfenwick
Original Path:
trunk/finley
Throw an exception if AbstractDomain::MPIBarrier is called (This shouldn't happen).
Added Barrier to saveVTK.
Replaced some misused keywords.
Revision
2243 -
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Modified
Wed Feb 4 05:22:28 2009 UTC
(12 years ago)
by
gross
Original Path:
trunk/finley
small bug fixed which could lead to a seg fault
Revision
2242 -
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Modified
Wed Feb 4 05:04:20 2009 UTC
(12 years ago)
by
jfenwick
Original Path:
trunk/finley
Development continues on unit test framework
Revision
2239 -
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Modified
Wed Feb 4 00:42:46 2009 UTC
(12 years ago)
by
jfenwick
Original Path:
trunk/finley
Added pyvisi and c++ unit tests to build of utest.sh
Revision
2235 -
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Modified
Tue Feb 3 01:47:47 2009 UTC
(12 years ago)
by
jfenwick
Original Path:
trunk/finley
Added support for generating non-scons test scripts
Revision
2234 -
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Modified
Mon Feb 2 05:30:30 2009 UTC
(12 years ago)
by
artak
Original Path:
trunk/finley
two new tests for Mountains class are added.
Revision
2231 -
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Modified
Fri Jan 30 05:16:05 2009 UTC
(12 years ago)
by
jfenwick
Original Path:
trunk/finley
Modified scons files to compile c++ unit tests with the same options used to compile the libraries.
Revision
2199 -
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Modified
Thu Jan 8 06:10:52 2009 UTC
(12 years, 1 month ago)
by
jfenwick
Original Path:
trunk/finley
Misc fixes:
Added some svn:ignore properties for output files that were cluttering things up.
Lazy fixes:
Fixed shape calculations for TRACE and TRANSPOSE for rank>2.
Adjusted unit test accordingly.
As a Temporary change to DataC.cpp to test for lazy data in DataC's expanded check.
This is wrong but would only affect people using lazy data.
The proper fix will come when the numarray removal code moves over from the branch.
Made tensor product AUTOLAZY capable.
Fixed some bugs resolving tensor products (incorrect offsets in buffers).
Macro'd some stray couts.
- It appears that AUTOLAZY now passes all unit tests.
- It will not be _really_ safe for general use until I can add COW.
- (Everything's better with COW)
Revision
2197 -
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Modified
Thu Jan 8 05:49:16 2009 UTC
(12 years, 1 month ago)
by
gross
Original Path:
trunk/finley
modifications to the way cosntraints are handeled in the Transport problem
Revision
2189 -
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Modified
Tue Dec 23 04:24:37 2008 UTC
(12 years, 2 months ago)
by
caltinay
Original Path:
trunk/finley
Changed generate_dumps script to use saveESD().
Revision
2180 -
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Modified
Thu Dec 18 00:30:25 2008 UTC
(12 years, 2 months ago)
by
caltinay
Original Path:
trunk/finley
Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 3).
With boost 1.37 all epydoc warnings are gone now.
This commit should be a no-op.
Revision
2172 -
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Modified
Wed Dec 17 08:30:12 2008 UTC
(12 years, 2 months ago)
by
phornby
Original Path:
trunk/finley
Fixed some signed/unsigned comparisons occurin g via MAX().
They were harmless anyway.
Revision
2156 -
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Modified
Mon Dec 15 05:09:02 2008 UTC
(12 years, 2 months ago)
by
gross
Original Path:
trunk/finley
some modifications to the iterative solver to make them easier to use.
There are also improved versions of the Darcy flux solver and the incompressible solver.
Revision
2151 -
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Modified
Wed Dec 10 06:34:25 2008 UTC
(12 years, 2 months ago)
by
caltinay
Original Path:
trunk/finley
Moved common functionality from saveDX/VTK into private method. May be used
for future save* methods.
Revision
2150 -
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Modified
Wed Dec 10 05:57:12 2008 UTC
(12 years, 2 months ago)
by
caltinay
Original Path:
trunk/finley
Removed unnecessary "magic name length".
Revision
2149 -
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Modified
Wed Dec 10 05:08:17 2008 UTC
(12 years, 2 months ago)
by
caltinay
Original Path:
trunk/finley
Fixed a typo in error message.
Revision
2141 -
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Modified
Tue Dec 9 04:32:32 2008 UTC
(12 years, 2 months ago)
by
caltinay
Original Path:
trunk/finley
saveVTK: Reviewed and changed parts of this function due to several issues.
Confirmed that it's still working using finley/test/python/generate_dumps.py
(manually inserted saveVTK) with and without MPI on 1 and 4 processors.
Changes include:
- removed unnecessary USE_VTK check - we are not using any VTK functions
- fixed writing of Rec9 & Hex27 connectivity data in MPI mode
- fixed some cases where the file was not closed and memory was not freed
- replaced many instances of fprintf by fputs (simple strings)
- some minor optimizations by moving or initializing variables and combining
if-clauses
- got rid of ~300 lines of code and switched to consistent indentation making
the file a bit better readable
Revision
2100 -
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Modified
Wed Nov 26 08:13:00 2008 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk/finley
This commit cleans up the incompressible solver and adds a DarcyFlux solver in model module.
Some documentation for both classes has been added.
The convection code is only linear at the moment.
Revision
2094 -
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Modified
Tue Nov 25 05:45:41 2008 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk/finley
saveVTK: Close the file even if error is set upon completion. Note that
in some places the function still returns without proper clean up but
this won't be fixed until the rewrite to avoid more mess in the code.
Revision
2087 -
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Modified
Mon Nov 24 04:51:30 2008 UTC
(12 years, 3 months ago)
by
jfenwick
Original Path:
trunk/finley
Addressing mantis issue #221.
Interpolation.. and probeInterpolation.. now "work" for the NullDomain.
Work means throw a descriptive exception if you try to move into or out
of the NullDomain.
The bad_cast exception related to this has been fixed.
Revision
2078 -
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Thu Nov 20 16:10:10 2008 UTC
(12 years, 3 months ago)
by
phornby
Original Path:
trunk/finley
Two changes.
1. Move blocktimer from escript to esysUtils.
2. Make it possible to link to paso as a DLL or .so.
Should have no effect on 'nix's
In respect of 1., blocktimer had begun to spring up everywhere, so
for the moment I thought it best to move it to the only other library that
pops up all over the place.
In respect of 2., paso needed to be a DLL in order to use the windows intelc /fast
option, which does aggressive multi-file optimisations. Even in its current form, it either
vectorises or parallelises hundreds more loops in the esys system than appear in the pragmas.
In achieving 2. I have not been too delicate in adding
PASO_DLL_API
declarations to the .h files in paso/src. Only toward the end of the process of
the conversion, when the number of linker errors dropped below 20, say, did I choosy about what
functions in a header I declared PASO_DLL_API. As a result, there are likely to be many routines
declared as external functions symbols that are in fact internal to the paso DLL.
Why is this an issue? It prevents the intelc compiler from getting aggressive on the paso module.
With pain there is sometimes gain. At least all the DLL rules in windows give good
(non-microsoft) compiler writers a chance to really shine.
So, if you should see a PASO_DLL_API on a function in a paso header file,
and think to yourself, "that function is only called in paso, why export it?", then feel free to
delete the PASO_DLL_API export declaration.
Here's hoping for no breakage.....
Revision
2076 -
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Thu Nov 20 12:34:17 2008 UTC
(12 years, 3 months ago)
by
phornby
Original Path:
trunk/finley
I may get into trouble for this.
boost-python 1.34 does have a docstring_options class,
but does not have a 3 argument constructor for
it. So the test has been modified to
#if ((BOOST_VERSION/100)%1000 > 34) || (BOOST_VERSION/100000 >1)
If you wish to make things more delicate, one can define a 2 argument construction
of docopt just for 1.34 (with an #elif). Probably not worth the effort frankly.
Hope that this has not broken anything for anyone else. The SVN logs suggest this is a
little fragile.....
Also, please be aware that much of our chemistry interface code, that we wish to use with
escript, makes extensive use of boost python.
Having two different boost versions mucking with the python interpreter sounds
like a really bad idea, I'm sure you'll agree.
The problem is that it is not a simple task for us to build new versions of boost-python
on all our platforms. Consequently, it would be nice to be informed when you guys
intend to upgrade a support library of this nature so that we can plan and allocate
resources to keep up.
Cheers.
Revision
2069 -
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Modified
Thu Nov 20 09:13:19 2008 UTC
(12 years, 3 months ago)
by
phornby
Original Path:
trunk/finley
Another ElementTypeId TypeId=NoType; fix.
Revision
2064 -
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Modified
Thu Nov 20 04:06:34 2008 UTC
(12 years, 3 months ago)
by
jfenwick
Original Path:
trunk/finley
docstring_options was added in boost 1.34 - macro'd it out if you are
compiling earlier than that.
Revision
2061 -
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Modified
Wed Nov 19 03:40:21 2008 UTC
(12 years, 3 months ago)
by
jfenwick
Original Path:
trunk/finley
Fixing some warnings from epydoc.
Disabled c++ signatures in python docstrings.
Removed references to Bruce in epydoc and the users guide.
Revision
2059 -
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Modified
Mon Nov 17 22:57:50 2008 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk/finley
changes as suggested by phornby
Revision
2052 -
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Modified
Mon Nov 17 11:15:07 2008 UTC
(12 years, 3 months ago)
by
phornby
Original Path:
trunk/finley
MALLOC_CHUNK -> malloc_chunk in case there is a name-space
collision with a macro at some time in the future.
Revision
2041 -
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Modified
Sat Nov 15 12:45:15 2008 UTC
(12 years, 3 months ago)
by
phornby
Original Path:
trunk/finley
ESYS_STATIC_LIB no longer needs to be defined in SConscript files.
Revision
2034 -
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Modified
Thu Nov 13 03:03:42 2008 UTC
(12 years, 3 months ago)
by
artak
Original Path:
trunk/finley
variable <set> is initilized to get rid of compiler warnning errors. finley/src/Quadrature.c
Revision
2033 -
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Modified
Wed Nov 12 08:14:11 2008 UTC
(12 years, 3 months ago)
by
phornby
Original Path:
trunk/finley
As in the last message, add an extra CPPDEFINE to py_local_wrapper_env
Revision
2031 -
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Modified
Wed Nov 12 08:02:33 2008 UTC
(12 years, 3 months ago)
by
phornby
Original Path:
trunk/finley
Need finer control than INTERFACE_STATIC_LIB could exert. Now there is a
XXX_STATIC_LIB for each lib.
Revision
2030 -
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Modified
Wed Nov 12 07:34:08 2008 UTC
(12 years, 3 months ago)
by
phornby
Original Path:
trunk/finley
Fix the undef'fing of _DLL_API in windows case.
Revision
2029 -
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Modified
Wed Nov 12 07:27:05 2008 UTC
(12 years, 3 months ago)
by
phornby
Original Path:
trunk/finley
Test a more elegant way of handling XXX_DLL_API macros.
Revision
2027 -
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Modified
Tue Nov 11 02:52:24 2008 UTC
(12 years, 3 months ago)
by
phornby
Original Path:
trunk/finley
Ensure ESCRIPT_EXPORTS is defined only while compiling escript on windows.
A similar comment applies to FINLEY_EXPORTS.
SConstruct:
Fixed a comment.
reformatted the Export() call, and added IS_WINDOWS_PLATFORM to the exports.
Revision
2019 -
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Modified
Mon Nov 10 13:49:00 2008 UTC
(12 years, 3 months ago)
by
phornby
Original Path:
trunk/finley
Yet another concerted effort to handle missing macro arguments
in a portable way.
Revision
2018 -
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Modified
Mon Nov 10 13:31:43 2008 UTC
(12 years, 3 months ago)
by
phornby
Original Path:
trunk/finley
Only import mathimf.h on win32 with intelc. Allow others to use the
standard math.h
change the #ifndef const -> #ifndef __const (oops!!)
Revision
2006 -
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Modified
Mon Nov 10 03:07:08 2008 UTC
(12 years, 3 months ago)
by
jfenwick
Original Path:
trunk/finley
Updating svn:ignore properties.
Revision
1991 -
Directory Listing
Modified
Fri Nov 7 04:32:38 2008 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk/finley
finley: Constify two variables.
Revision
1990 -
Directory Listing
Modified
Fri Nov 7 04:19:07 2008 UTC
(12 years, 3 months ago)
by
ksteube
Original Path:
trunk/finley
Changes to avoid compiler warnings
Finley files now pass -Wall on gcc 4.3.2
saveVTK.c: replaced printf(string) with printf("%s", string)
MeshAdapterFactory.cpp: moved a few lines to avoid possible use of uninitialized vars
MeshAdapter.cpp: initialized ncdims in mesh dump
There is still a warning from a boost include file
Revision
1985 -
Directory Listing
Modified
Thu Nov 6 22:13:54 2008 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk/finley
finley: Fixed compiler warnings (uninitialized vars). This is only a temporary hack. At a later stage this beast will be rewritten...
Revision
1965 -
Directory Listing
Modified
Wed Nov 5 03:24:09 2008 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk/finley
Fixed working directory of the seismic_wave example.
Revision
1937 -
Directory Listing
Modified
Tue Oct 28 01:26:55 2008 UTC
(12 years, 4 months ago)
by
ksteube
Original Path:
trunk/finley
Created a mid-sized test suite 'scalable_tests' as an alternative to 'all_tests'.
These run on small-ish systems and also on all 512 cores of Savanna.
Most features are covered, but it's better to use 'all_tests'.
Revision
1919 -
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Modified
Thu Oct 23 10:03:10 2008 UTC
(12 years, 4 months ago)
by
phornby
Original Path:
trunk/finley
Remove un-used vars introduced by my _WIN32 compilation branch. This is a checkin to allow a test of both compilation brabches.
Revision
1912 -
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Modified
Thu Oct 23 05:08:31 2008 UTC
(12 years, 4 months ago)
by
ksteube
Original Path:
trunk/finley
Finished wrapper script by setting PATH.
The wrapper script reproduces the environment of the person who built
the software + values specified in his hostname_options.py file. A
user can run a python script without setting any environment variables
or loading any SGI modules.
Revision
1907 -
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Modified
Wed Oct 22 11:41:18 2008 UTC
(12 years, 4 months ago)
by
phornby
Original Path:
trunk/finley
Mesh_read.c - remove a debug printout introduced by me (oops).
Pattern_coupling.c - remove declaration of naib where it was not used, and remove naib frpm
omp pragmas where it was not declared, and not used.
Apparently cognac.ivec.org did not like this??
Revision
1900 -
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Modified
Mon Oct 20 07:33:42 2008 UTC
(12 years, 4 months ago)
by
phornby
Original Path:
trunk/finley
Fake commit to sync with my windows machine.
Fix looks like like it worked on Dedbian. Thanks.
Revision
1895 -
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Modified
Sat Oct 18 11:06:38 2008 UTC
(12 years, 4 months ago)
by
phornby
Original Path:
trunk/finley
Remove the amalgamated test suite because it consumes too much resource on winblows
Revision
1894 -
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Modified
Sat Oct 18 11:00:08 2008 UTC
(12 years, 4 months ago)
by
phornby
Original Path:
trunk/finley
Break run_linearPDEsOnFinley.py into 3 separate test modules to avoid crashes on winblows
Revision
1893 -
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Modified
Fri Oct 17 09:59:39 2008 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk/finley
brakets in SCAN error detection were missing.
Revision
1887 -
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Modified
Wed Oct 15 03:26:25 2008 UTC
(12 years, 4 months ago)
by
ksteube
Original Path:
trunk/finley
Fixed two typos that stopped the test suite from running.
Also, gcc 4.3.2 issued several warnings not seen before:
ignoring the return value of fscanf and using the wrong format
with printf.
Revision
1880 -
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Modified
Tue Oct 14 04:23:21 2008 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk/finley
s/==/=/ in one more place in generate_dumps.py
Revision
1878 -
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Modified
Tue Oct 14 03:39:13 2008 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk/finley
new version of JacobiFree Newton GMRES + test added.
Revision
1877 -
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Modified
Tue Oct 14 02:58:39 2008 UTC
(12 years, 4 months ago)
by
ksteube
Original Path:
trunk/finley
convection.py checkpointing uses mkdir/rmdir, and under MPI there
was a race condition.
mkdir needs to be run on only one CPU and then a barrier to prevent
working processors from using the directory before it exists.
Added methods domain.MPIBarrier and domain.onMasterProcessor() to
implement this technique.
A more general solution might be possible in the future.
Revision
1876 -
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Modified
Mon Oct 13 10:19:17 2008 UTC
(12 years, 4 months ago)
by
phornby
Original Path:
trunk/finley
ftell lies on windows, so there is a win32 branch that reads the tag lines char by char.
Revision
1872 -
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Modified
Mon Oct 13 00:18:55 2008 UTC
(12 years, 4 months ago)
by
jfenwick
Original Path:
trunk/finley
Closing the moreshared branch
Revision
1867 -
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Modified
Thu Oct 9 05:35:24 2008 UTC
(12 years, 4 months ago)
by
ksteube
Original Path:
trunk/finley
New method for unit testing to compare two saveVTK files.
Can detect same-ness even if the nodes are re-ordered.
To do: issue with contact elements in that identical
nodes confuses test for node re-ordering.
Revision
1866 -
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Modified
Thu Oct 9 04:01:06 2008 UTC
(12 years, 4 months ago)
by
ksteube
Original Path:
trunk/finley
Repair to saveVTK similar to revision 1677 (there we got the number of offsets correct
and in this revision we got the number of types correct).
In case of MPI > 1 do not run saveDX tests since saveDX is not MPI parallel.
Revision
1859 -
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Modified
Wed Oct 8 03:03:37 2008 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk/finley
first version of testing for transport solver.
Revision
1856 -
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Modified
Tue Oct 7 07:10:47 2008 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk/finley
The NC dump tests work now with MPI.
In fact the old test did not exactly what it supposed to
Revision
1847 -
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Modified
Fri Oct 3 06:45:34 2008 UTC
(12 years, 4 months ago)
by
phornby
Original Path:
trunk/finley
OK, these get the blahcpp.so names correct now.
Revision
1845 -
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Modified
Fri Oct 3 05:23:47 2008 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk/finley
some naming problem for the installation of escriptcpp and finleycpp. Apparently this came is trough some mofifications in windows
Revision
1841 -
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Modified
Fri Oct 3 03:57:52 2008 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk/finley
modification on LinearPDE class and a first version of Transport class
Revision
1840 -
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Modified
Fri Oct 3 03:16:11 2008 UTC
(12 years, 4 months ago)
by
phornby
Original Path:
trunk/finley
These now install the correct .pyd files on windows.
Revision
1839 -
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Modified
Fri Oct 3 02:06:00 2008 UTC
(12 years, 4 months ago)
by
phornby
Original Path:
trunk/finley
temporary fix to get run_tests working
Revision
1830 -
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Modified
Thu Oct 2 06:51:48 2008 UTC
(12 years, 4 months ago)
by
ksteube
Original Path:
trunk/finley
Tests using JoinFaces() and domain.write() will not work under MPI and must be disabled for num procs > 1
Revision
1829 -
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Modified
Thu Oct 2 05:40:30 2008 UTC
(12 years, 4 months ago)
by
ksteube
Original Path:
trunk/finley
Adjusted tests for MPI.
Enabled two tests in run_inputOutput.py for order=2 after recent bugfix.
Revision
1827 -
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Modified
Thu Oct 2 04:28:07 2008 UTC
(12 years, 4 months ago)
by
ksteube
Original Path:
trunk/finley
MPI parallelized dump/load for Constant and Tagged data.
run_escriptOnFinley.py runs hybrid MPI/OpenMP.
Revision
1823 -
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Modified
Wed Oct 1 05:56:05 2008 UTC
(12 years, 4 months ago)
by
artak
Original Path:
trunk/finley
GS preconditioner now works for block_size 2 and 3 as well. Sweep parameter introdiced, but not working yet
Revision
1819 -
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Modified
Tue Sep 30 05:58:06 2008 UTC
(12 years, 4 months ago)
by
artak
Original Path:
trunk/finley
Firs version of symmetric Gauss-Seidel preconditioner with coloring
Revision
1816 -
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Modified
Tue Sep 30 03:40:51 2008 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk/finley
bug with MPI fixed (relevant for cases of n0 and n1 < num processors)
Revision
1815 -
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Modified
Tue Sep 30 02:10:32 2008 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk/finley
tools to generate dump files for relevant data and mesh types
Revision
1814 -
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Modified
Tue Sep 30 00:21:21 2008 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk/finley
Contact elements have the right tyoe now.
Revision
1811 -
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Modified
Thu Sep 25 23:11:13 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Copyright updated in all files
Revision
1810 -
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Modified
Thu Sep 25 06:53:26 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Updated copyright for a few remaining python files
Revision
1809 -
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Modified
Thu Sep 25 06:43:44 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Copyright updated in all python files
Revision
1807 -
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Modified
Thu Sep 25 01:04:51 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
The new MPI parallel ReadMesh is now the default after having passed
all tests both with and without MPI.
If you have been using ReadMesh you should notice no difference.
If you were using ReadMeshMPI then change to ReadMesh.
Revision
1805 -
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Modified
Wed Sep 24 23:39:00 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Added python-level methods getMPISizeWorld() and getMPIRankWorld() for MPI process info.
Test suite run_inputOutput.py runs on any number of cores now, hybrid may still be a problem.
Revision
1804 -
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Modified
Wed Sep 24 07:52:19 2008 UTC
(12 years, 5 months ago)
by
gross
Original Path:
trunk/finley
a robister version of the upwinding scheme
Revision
1802 -
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Modified
Tue Sep 23 01:03:29 2008 UTC
(12 years, 5 months ago)
by
jfenwick
Original Path:
trunk/finley
Added canTag methods to FunctionSpace and AbstractDomain (and its
offspring).
This checks to see if the domain supports tags for the given type of
function space.
Constructors for DataTagged now throw exceptions if you attempt to make
a DataTagged with a FunctionSpace which does not support tags.
To allow the default constructor to work, NullDomain has a single
functioncode which "supports" tagging.
Fixed a bug in DataTagged::toString and DataTypes::pointToString.
Added FunctionSpace::getListOfTagsSTL.
algorithm(DataTagged, BinaryFunction) in DataAlgorithm now only
processes tags known to be in use.
This fixes mantis issue #0000186.
Added comment to Data.h intro warning about holding references if the
underlying DataAbstract changes.
_python_ unit tests have been updated to test TaggedData with invalid
FunctionSpaces and to give the correct answers to Lsup etc.
Revision
1801 -
Directory Listing
Modified
Fri Sep 19 01:37:09 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Fixed serialization of I/O for MPI...code didn't compile without MPI
Revision
1800 -
Directory Listing
Modified
Thu Sep 18 05:28:20 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Serialized parallel I/O when writing mesh or data to NetCDF file on multiple MPI processors.
Added domain method getMPIComm() to complement getMPISize() and getMPIRank().
Revision
1796 -
Directory Listing
Modified
Wed Sep 17 01:45:46 2008 UTC
(12 years, 5 months ago)
by
jfenwick
Original Path:
trunk/finley
Merged noarrayview branch onto trunk.
Revision
1787 -
Directory Listing
Modified
Mon Sep 15 01:36:34 2008 UTC
(12 years, 5 months ago)
by
artak
Original Path:
trunk/finley
MINRES solver is added to escript. Additional 16 tests are added to run_simplesolve for MINRES and TFQMR solvers
Revision
1777 -
Directory Listing
Modified
Tue Sep 9 06:39:37 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Implemented Lutz fix for MPI mesh dump/load using NetCDF
Revision
1776 -
Directory Listing
Modified
Tue Sep 9 06:03:53 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Cleared away some debugging prints
Revision
1772 -
Directory Listing
Modified
Tue Sep 9 00:18:49 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Added tests for reading a finley mesh and comparing it to a newly-created
mesh of the same type
Moved my mesh comparison function to be a class method
Revision
1771 -
Directory Listing
Modified
Mon Sep 8 22:47:55 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Removed failing test until we fix a bug.
Fixed several compiler warnings.
Revision
1770 -
Directory Listing
Modified
Mon Sep 8 06:58:47 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Detects an array reference out of bounds when running run_inputOutput.py
Revision
1765 -
Directory Listing
Modified
Mon Sep 8 02:49:57 2008 UTC
(12 years, 5 months ago)
by
gross
Original Path:
trunk/finley
some fixes for the case of empty processor
Revision
1764 -
Directory Listing
Modified
Mon Sep 8 02:48:26 2008 UTC
(12 years, 5 months ago)
by
gross
Original Path:
trunk/finley
type for the non mpi case fixed.
Revision
1760 -
Directory Listing
Modified
Mon Sep 8 02:35:56 2008 UTC
(12 years, 5 months ago)
by
gross
Original Path:
trunk/finley
some renaming of variables to clarify what is going on
Revision
1755 -
Directory Listing
Modified
Mon Sep 8 01:34:40 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Added new field to NetCDF dump of mesh
Revision
1754 -
Directory Listing
Modified
Sun Sep 7 22:07:26 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Added new test suite run_inputOutput.py to systematically test I/O.
Can determine if two domains are same with Fourier analysis.
Added new method getNumDataPointsGlobal to return number of DPs of a distributed mesh.
Reading of tags in ReadMeshMPI failed occasionally, should be more robust now.
Revision
1753 -
Directory Listing
Modified
Sun Sep 7 22:01:23 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Test suite fails due to missing arg in call to Finley_Mesh_createMappings.
Added NULL arg, but still need to find proper fix as loadMesh does not work.
Adjusted SConstruct to delete pythonMPI if not compiled for MPI.
Revision
1749 -
Directory Listing
Modified
Wed Sep 3 07:25:01 2008 UTC
(12 years, 5 months ago)
by
gross
Original Path:
trunk/finley
fixes a problem with the saveVTK writing under mpi
Revision
1748 -
Directory Listing
Modified
Wed Sep 3 06:10:39 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
MPI parallelism for Data().dump and load. Use multiple NetCDF
files, one file per MPI process
Revision
1745 -
Directory Listing
Modified
Wed Sep 3 00:41:24 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
MPI mesh_read was crashing if tags not present
Revision
1744 -
Directory Listing
Modified
Tue Sep 2 07:39:18 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Can now read and MPI distribute a finley mesh including the tags.
Revision
1743 -
Directory Listing
Modified
Tue Sep 2 00:54:05 2008 UTC
(12 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Avoid crash due to zero-length writes in MPI_File_write_ordered.
Write a space instead of empty string.
The space will be at the end of a line and cause no problem.
Revision
1742 -
Directory Listing
Modified
Mon Sep 1 05:55:00 2008 UTC
(12 years, 5 months ago)
by
gross
Original Path:
trunk/finley
tests for VTK writer rec9 and Hex27 added
Revision
1741 -
Directory Listing
Modified
Mon Sep 1 04:06:41 2008 UTC
(12 years, 5 months ago)
by
gross
Original Path:
trunk/finley
VTK writer supports HEX27 and REC9 now.
Revision
1740 -
Directory Listing
Modified
Fri Aug 29 06:23:11 2008 UTC
(12 years, 5 months ago)
by
gross
Original Path:
trunk/finley
and some fixes for the GMSH reader
Revision
1739 -
Directory Listing
Modified
Fri Aug 29 06:19:53 2008 UTC
(12 years, 6 months ago)
by
gross
Original Path:
trunk/finley
Fix in the MPI mesh reader: Owner need to be set.
Revision
1738 -
Directory Listing
Modified
Fri Aug 29 05:06:45 2008 UTC
(12 years, 6 months ago)
by
gross
Original Path:
trunk/finley
some changes improving the robustness for MPI if the elements/processor is small
Revision
1736 -
Directory Listing
Modified
Fri Aug 29 02:23:16 2008 UTC
(12 years, 6 months ago)
by
gross
Original Path:
trunk/finley
This fixes a problem which is typically arising when using reduced order
with MPI and a "small" number of elements per processor. In this case it
can happen that the couple matrix is not using all entries sent to the
processor. The old implementations assumed that the indices will cover
the entire input. This assumption has been removed.
Revision
1735 -
Directory Listing
Modified
Fri Aug 29 00:18:26 2008 UTC
(12 years, 6 months ago)
by
gross
Original Path:
trunk/finley
This fixes a bug in the callculation of communication tables in
particular for the data to be send away. The problem was that the
previously used method based on the idea to use the elements stored on a
processor to decide what to send away is not suitable for the reduced
DOF. Now each processor sends a list of the DOFs it is expecting to its
naighbours.
Revision
1733 -
Directory Listing
Modified
Thu Aug 28 01:46:07 2008 UTC
(12 years, 6 months ago)
by
gross
Original Path:
trunk/finley
bug fix: if the numer of elements to be generated suppose to be zero
still face elements and nodes are generated. this is fixed now.
Revision
1732 -
Directory Listing
Modified
Wed Aug 27 05:47:03 2008 UTC
(12 years, 6 months ago)
by
ksteube
Original Path:
trunk/finley
MPI read of finley mesh file working except for a bug related to mesh_prepare
Revision
1725 -
Directory Listing
Modified
Tue Aug 26 03:31:49 2008 UTC
(12 years, 6 months ago)
by
ksteube
Original Path:
trunk/finley
MPI read of .fly mesh file: fixed bug in message size while fanning out elements
Revision
1722 -
Directory Listing
Modified
Fri Aug 22 04:20:30 2008 UTC
(12 years, 6 months ago)
by
gross
Original Path:
trunk/finley
The CSR matrix patters handed ober to ParMetis may not containn the main diagonal entry.
This revisison is fixing the problem.
Revision
1720 -
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Modified
Fri Aug 22 00:24:35 2008 UTC
(12 years, 6 months ago)
by
gross
Original Path:
trunk/finley
PARAMETIS macro renamed to USE_PARAMETIS as set by scons
Revision
1716 -
Directory Listing
Modified
Thu Aug 21 05:03:49 2008 UTC
(12 years, 6 months ago)
by
gross
Original Path:
trunk/finley
getListOfTags method added to FunctionSpace class
Revision
1713 -
Directory Listing
Modified
Wed Aug 20 07:03:45 2008 UTC
(12 years, 6 months ago)
by
ksteube
Original Path:
trunk/finley
MPI read of mesh.fly: reduced memory requirements
Revision
1707 -
Directory Listing
Modified
Thu Aug 14 06:38:14 2008 UTC
(12 years, 6 months ago)
by
ksteube
Original Path:
trunk/finley
Fixed nightly tests for savanna (no longer running in PBS cause can't
compile on compute node).
Modified domain.print_mesh_info() to tell how many elements are owned by
a node and how many are in the overlap.
Instrumented the preconditioner step.
Revision
1705 -
Directory Listing
Modified
Thu Aug 14 05:56:40 2008 UTC
(12 years, 6 months ago)
by
ksteube
Original Path:
trunk/finley
Branch scons-dev is hereby closed.
Some parts of scons scripts have been re-written.
Revision
1703 -
Directory Listing
Modified
Thu Aug 14 05:34:25 2008 UTC
(12 years, 6 months ago)
by
artak
Original Path:
trunk/finley
TFQMR solver is added to PASO solver. It is not parallelised yet.
Revision
1694 -
Directory Listing
Modified
Fri Aug 8 04:27:46 2008 UTC
(12 years, 6 months ago)
by
artak
Original Path:
trunk/finley
test_NoPDE_vector_variable is changed to avoid 0/0 division
Revision
1677 -
Directory Listing
Modified
Mon Jul 28 06:36:19 2008 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk/finley
bug in the MPI version of saveVTK fixed
Revision
1674 -
Directory Listing
Modified
Fri Jul 25 00:47:16 2008 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk/finley
Command line options (-e NE and -s solver ) are added
Revision
1669 -
Directory Listing
Modified
Thu Jul 24 01:10:04 2008 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk/finley
A problem with VTK writer and MPI is fixed: Apparently MPI_file_open does not "delete" the file which has the effect that
if less date are written into the file as the file contained when opened bits of the previous containt remains in the file. This problem is fixed
by deleting the file if it exists before open it with MPI. The additional function Paso_existFile needed to be added as there is no standart C
function to test the exists of a file.
Revision
1665 -
Directory Listing
Modified
Wed Jul 23 03:23:03 2008 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk/finley
bug in the MPI version of saveVTK fixed
Revision
1664 -
Directory Listing
Modified
Tue Jul 22 03:41:38 2008 UTC
(12 years, 7 months ago)
by
ksteube
Original Path:
trunk/finley
Install() on Mac OS was naming shared libs file.dylib...not OK for our
libraries for python calling C++ (escriptcpp.so and finleycpp.so).
This is because python's dlopen() calls only look for .so files.
Revision
1660 -
Directory Listing
Modified
Mon Jul 21 03:23:46 2008 UTC
(12 years, 7 months ago)
by
ksteube
Original Path:
trunk/finley
Some variables were not declared as a result of recent cleanup
Revision
1659 -
Directory Listing
Modified
Fri Jul 18 02:28:13 2008 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk/finley
some first version of a robust level set
Revision
1650 -
Directory Listing
Modified
Tue Jul 15 08:58:22 2008 UTC
(12 years, 7 months ago)
by
phornby
Original Path:
trunk/finley
more care with m_t and diagS needed in the pragmas.
Revision
1649 -
Directory Listing
Modified
Tue Jul 15 08:41:02 2008 UTC
(12 years, 7 months ago)
by
phornby
Original Path:
trunk/finley
Make operator=() on exception non-virtual. Should silence the Altix compiler.
However, if an exception is cast to another parent type, and
operator=() is called when the exception so cast is an l-value in the assignment,
an "incomplete" assignment will occur, copying only the parent class members of the
l-value in the assignmnet.
Revision
1646 -
Directory Listing
Modified
Tue Jul 15 05:27:39 2008 UTC
(12 years, 7 months ago)
by
phornby
Original Path:
trunk/finley
Unused vars due to the #if 0's in the code.
Revision
1637 -
Directory Listing
Modified
Mon Jul 14 05:34:59 2008 UTC
(12 years, 7 months ago)
by
ksteube
Original Path:
trunk/finley
Resolved some compiler warnings
Changed blocktimer to not use strdup, intead malloc and strcpy
Revision
1634 -
Directory Listing
Modified
Sat Jul 12 09:08:33 2008 UTC
(12 years, 7 months ago)
by
phornby
Original Path:
trunk/finley
linux_gcc_eg_options.py:
remove the std99 option, it is no longer needed as the code compiles without
C 1999 extension (need for these extensions elinminated in windows port).
Turn on all warnings except unknown pragmas. Should catch a lot of stuff.
SConstruct:
Impassioned plea
system_dep.h:
Add the standard incantation for dealing with const declarations
in C code called from C and C++
blocktimer:
Get the calling interface right for C code called from C and C++
and use __const as defined in system_dep.h
(Should be re-factored into compiler_dep.h file).
MeshAdapterFactory.cpp:
Since we have (effectively) no control over netCDF policy,
cast const char *'s to char *'s
Revision
1632 -
Directory Listing
Modified
Sat Jul 12 07:17:50 2008 UTC
(12 years, 7 months ago)
by
trankine
Original Path:
trunk/finley
compiling with netcdf on revealed an unused var.
Revision
1628 -
Directory Listing
Modified
Fri Jul 11 13:12:46 2008 UTC
(12 years, 7 months ago)
by
phornby
Original Path:
trunk/finley
Merge in /branches/windows_from_1456_trunk_1620_merged_in branch.
You will find a preserved pre-merge trunk in tags under tags/trunk_at_1625.
That will be useful for diffing & checking on my stupidity.
Here is a list of the conflicts and their resolution at this
point in time.
=================================================================================
(LLWS == looks like white space).
finley/src/Assemble_addToSystemMatrix.c - resolve to branch - unused var. may be wrong.....
finley/src/CPPAdapter/SystemMatrixAdapter.cpp - resolve to branch - LLWS
finley/src/CPPAdapter/MeshAdapter.cpp - resolve to branch - LLWS
paso/src/PCG.c - resolve to branch - unused var fixes.
paso/src/SolverFCT.c - resolve to branch - LLWS
paso/src/FGMRES.c - resolve to branch - LLWS
paso/src/Common.h - resolve to trunk version. It's omp.h's include... not sure it's needed,
but for the sake of saftey.....
paso/src/Functions.c - resolve to branch version, indentation/tab removal and return error
on bad unimplemented Paso_FunctionCall.
paso/src/SolverFCT_solve.c - resolve to branch version, unused vars
paso/src/SparseMatrix_MatrixVector.c - resolve to branch version, unused vars.
escript/src/Utils.cpp - resloved to branch, needs WinSock2.h
escript/src/DataExpanded.cpp - resolved to branch version - LLWS
escript/src/DataFactory.cpp - resolve to branch version
=================================================================================
This currently passes tests on linux (debian), but is not checked on windows or Altix yet.
This checkin is to make a trunk I can check out for windows to do tests on it.
Known outstanding problem is in the operator=() method of exceptions
causing warning messages on the intel compilers.
May the God of doughnuts have mercy on my soul.
Revision
1574 -
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Modified
Mon May 26 13:59:58 2008 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk/finley
some modifications that may help to speed up compilation
Revision
1573 -
Directory Listing
Modified
Mon May 26 13:01:31 2008 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk/finley
some modifications to run less tests
Revision
1572 -
Directory Listing
Modified
Mon May 26 12:50:56 2008 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk/finley
some openmp problems in PCG fixed.
Revision
1570 -
Directory Listing
Modified
Sat May 24 21:31:04 2008 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk/finley
modifications to PCG to support dynamic scheduling
Revision
1568 -
Directory Listing
Modified
Sat May 24 03:15:08 2008 UTC
(12 years, 9 months ago)
by
ksteube
Original Path:
trunk/finley
Some testing on ac.apac.edu.au, more work needed
New pyvisi example offscreen.py for offscreen rendering
Revision
1567 -
Directory Listing
Modified
Thu May 22 22:52:41 2008 UTC
(12 years, 9 months ago)
by
ksteube
Original Path:
trunk/finley
scons all_tests passes on Savanna with OMP=1 and OMP=4.
New boost for Savanna.
A few more cases of #s -> %s.
Revision
1564 -
Directory Listing
Modified
Thu May 22 09:31:33 2008 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk/finley
some openmp dynamic scheduling for MVM.
Revision
1562 -
Directory Listing
Modified
Wed May 21 13:04:40 2008 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk/finley
The algebraic upwinding with MPI. The case of boundary constraint needs still some attention.
Revision
1556 -
Directory Listing
Modified
Mon May 12 00:54:58 2008 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk/finley
Modification to allow mixed mode execution.
In order to keep the code portable accross platform all MPI calls within
parallel regions have been moved.
Revision
1553 -
Directory Listing
Modified
Thu May 8 09:38:07 2008 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk/finley
some small bugs fixed to get MPI going with the modification. MPI version of BiCGStab added.
Revision
1552 -
Directory Listing
Modified
Thu May 8 08:52:41 2008 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk/finley
some changes to make the implementatiopn of a upwind MPI version easier
Revision
1543 -
Directory Listing
Modified
Wed Apr 30 23:21:27 2008 UTC
(12 years, 9 months ago)
by
ksteube
Original Path:
trunk/finley
Create an MPEG movie from the state.N.vtu files of convection.py using pyvisi
Revision
1518 -
Directory Listing
Modified
Fri Apr 18 05:47:52 2008 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk/finley
Test are created for MINRES and TFQMR methods
Revision
1516 -
Directory Listing
Modified
Fri Apr 18 01:02:25 2008 UTC
(12 years, 10 months ago)
by
ksteube
Original Path:
trunk/finley
Reduced L and changed Arenious from 22.0 to 0.0
Revision
1515 -
Directory Listing
Modified
Thu Apr 17 23:36:31 2008 UTC
(12 years, 10 months ago)
by
ksteube
Original Path:
trunk/finley
Change to 3-D and change viscosity
Revision
1514 -
Directory Listing
Modified
Wed Apr 16 00:15:44 2008 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk/finley
default input parameter iter_restart for GMRES is set to 20
Revision
1513 -
Directory Listing
Modified
Tue Apr 15 08:47:57 2008 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk/finley
pragma ivdep removed. icc produced wrong code.
Revision
1494 -
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Modified
Mon Apr 14 06:53:28 2008 UTC
(12 years, 10 months ago)
by
phornby
Original Path:
trunk/finley
Make this exactly the same as the run_linearPDEsOnFinley.py.trunk_version on the windows
port branch.
Makes merge easier later.
Revision
1488 -
Directory Listing
Modified
Fri Apr 11 00:22:31 2008 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk/finley
restart parameter is changed in GMRES(m)
Revision
1483 -
Directory Listing
Modified
Wed Apr 9 03:20:00 2008 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk/finley
command line input parameters manipulation and execution time calculation are added
Revision
1476 -
Directory Listing
Modified
Mon Apr 7 23:38:50 2008 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk/finley
Jacobian-free Newton method added to Paso
Revision
1472 -
Directory Listing
Modified
Thu Apr 3 09:07:07 2008 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk/finley
some first steps towards restart added
Revision
1471 -
Directory Listing
Modified
Thu Apr 3 05:19:06 2008 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk/finley
test for GMRES solver for Stokes problem added
Revision
1464 -
Directory Listing
Modified
Tue Apr 1 23:27:09 2008 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk/finley
bug for interpoltion from reduced solution to elements in MPI fixed.
Revision
1459 -
Directory Listing
Modified
Thu Mar 27 01:49:10 2008 UTC
(12 years, 11 months ago)
by
ksteube
Original Path:
trunk/finley
Implemented ParMETIS for mesh partition optimization under MPI.
Documented optimize=True in User Guide for Brick() and Rectangle().
Revision
1456 -
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Modified
Thu Feb 28 17:20:49 2008 UTC
(13 years ago)
by
phornby
Original Path:
trunk/finley
Clean up some debugging files from the branch merge.
Revision
1455 -
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Modified
Thu Feb 28 17:19:44 2008 UTC
(13 years ago)
by
phornby
Original Path:
trunk/finley
Merge of branches/windows_from_1431_trunk.
Revamp of the exception system.
Fix unused vars and signed/unsigned comparisons.
defined a macro THROW(ARG) in the system_dep.h's to
deal with the expectations of declarations on different architectures.
Details in the logs of branches/windows_from_1431_trunk.
pre-merge snapshot of the trunk in tags/trunk_at_1452
Revision
1428 -
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Modified
Wed Feb 27 08:07:11 2008 UTC
(13 years ago)
by
trankine
Original Path:
trunk/finley
Merge changes from windows port branch to test build on *nix not broken.
Revision
1425 -
Directory Listing
Modified
Wed Feb 27 06:12:04 2008 UTC
(13 years ago)
by
artak
Original Path:
trunk/finley
Added new test for BiCGStab in run_simplesolve.py
algorithmic change in BICGSTAB: from r=r-wt to r=s-wt
Revision
1410 -
Directory Listing
Modified
Thu Feb 7 04:24:00 2008 UTC
(13 years ago)
by
gross
Original Path:
trunk/finley
a new version of the algebric upwinding a. flux limiter
Revision
1402 -
Directory Listing
Modified
Thu Jan 31 00:17:49 2008 UTC
(13 years ago)
by
ksteube
Original Path:
trunk/finley
now implemented to read/fan out elements
Revision
1401 -
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Modified
Fri Jan 25 04:31:18 2008 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk/finley
rewrite antidiffusion calculation to avoid coloring for OPENMP parallelization
Revision
1400 -
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Modified
Thu Jan 24 06:04:31 2008 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk/finley
better test example for upwinding added
Revision
1388 -
Directory Listing
Modified
Fri Jan 11 07:45:58 2008 UTC
(13 years, 1 month ago)
by
trankine
Original Path:
trunk/finley
And get the *(&(*&(* name right
Revision
1387 -
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Modified
Fri Jan 11 07:45:26 2008 UTC
(13 years, 1 month ago)
by
trankine
Original Path:
temp/finley
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.
Revision
1382 -
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Modified
Thu Jan 10 00:21:22 2008 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk/finley
some tests got deactivated. they are back now.
Revision
1378 -
Directory Listing
Modified
Wed Jan 9 03:53:38 2008 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk/finley
new reference files considering the change in quadrature schemes
Revision
1377 -
Directory Listing
Modified
Wed Jan 9 03:45:59 2008 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk/finley
Some code was moved around to slow down the bustling intel compiler v10.
Revision
1376 -
Directory Listing
Modified
Wed Jan 9 01:38:18 2008 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk/finley
inserted sys.exit(1) into the tests so scons can detect the failure of the test.
A similar statement has been removed from an earlier as it produces problems on 64bit Linux. Previously exit(0) was called in case of success but now this is not done in order to avoid a fatal end of the program. in the case of an error in the test there could be a fatal error so but I guess that this not really a problem.
PS: the fact that signal 0 was returned even for the case of an error lead to the illusion that all tests have been completed successfully.
Revision
1375 -
Directory Listing
Modified
Wed Jan 9 00:15:05 2008 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk/finley
bug in interpolation at reduced face elements fixed.
Revision
1374 -
Directory Listing
Modified
Tue Jan 8 09:37:55 2008 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk/finley
some changes to get things going on the cognac.ivec.org.
Revision
1371 -
Directory Listing
Modified
Thu Jan 3 06:11:21 2008 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk/finley
some bugs in the updwing scheme but there are still problem with the cross wind direction.
Revision
1368 -
Directory Listing
Modified
Wed Dec 19 03:45:20 2007 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk/finley
very first step towards a pythn wrapper for the transport problem.
Revision
1367 -
Directory Listing
Modified
Wed Dec 19 02:45:07 2007 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk/finley
finley can now assemble a transport problem.
Revision
1366 -
Directory Listing
Modified
Tue Dec 18 05:49:17 2007 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk/finley
finley can create a TransportProblem now
Revision
1364 -
Directory Listing
Modified
Mon Dec 17 07:22:45 2007 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk/finley
finley interface to paso's transport solver added.
Revision
1361 -
Directory Listing
Modified
Fri Dec 14 09:26:51 2007 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk/finley
first steps towards a flux controlled transport solver.
Revision
1360 -
Directory Listing
Modified
Thu Dec 13 05:05:00 2007 UTC
(13 years, 2 months ago)
by
ksteube
Original Path:
trunk/finley
Partial implementation of ReadMeshMPI.
Will eventually replace ReadMesh but for now has a different name.
Revision
1358 -
Directory Listing
Modified
Wed Dec 5 03:41:06 2007 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk/finley
setTaggedValue works now for expanded data.
Revision
1353 -
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Modified
Thu Nov 22 06:05:35 2007 UTC
(13 years, 3 months ago)
by
matt
Original Path:
trunk/finley
Reversed the removal of blocktimer code. This needs to be fixed properly for
the Windows stuff to work.
Revision
1352 -
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Modified
Thu Nov 22 03:43:28 2007 UTC
(13 years, 3 months ago)
by
matt
Original Path:
trunk/finley
Removed blocktimer code from Finley_Assemble_PDE().
Revision
1347 -
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Modified
Fri Nov 16 05:37:07 2007 UTC
(13 years, 3 months ago)
by
ksteube
Original Path:
trunk/finley
Completed mesh.dump(file) and mesh=LoadMesh(file) by adding TagMap and
implementing MPI parallelism.
Now allocating ElementFile for ContactElements even if there are none.
Removed file Mesh_dump.c since dump/loadMesh are in CPPAdapter/MeshAdapter*.cpp.
Revision
1346 -
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Modified
Wed Nov 14 22:48:12 2007 UTC
(13 years, 3 months ago)
by
ksteube
Original Path:
trunk/finley
dump/LoadMesh methods work except for TagMap, Point elements probably OK but are untested.
Revision
1345 -
Directory Listing
Modified
Wed Nov 14 07:53:34 2007 UTC
(13 years, 3 months ago)
by
ksteube
Original Path:
trunk/finley
Created LoadMesh to read a mesh from a distributed NetCDF file.
Can read nodes but not elements yet.
Revision
1344 -
Directory Listing
Modified
Wed Nov 14 04:28:25 2007 UTC
(13 years, 3 months ago)
by
ksteube
Original Path:
trunk/finley
Now using TMPMEMFREE but still thrashes memory for very large mesh.
Future solution will be to use NetCDF subsetting and less temp memory.
Revision
1343 -
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Modified
Wed Nov 14 02:48:02 2007 UTC
(13 years, 3 months ago)
by
ksteube
Original Path:
trunk/finley
First cut implementation of mesh.dump() using NetCDF. TagMap not
saved yet. The code for Points probably works but has not been tested.
Revision
1342 -
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Modified
Thu Nov 8 23:56:58 2007 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk/finley
improvements on integration schemes for tets and tris: double precision (not all), higher orders
Revision
1341 -
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Modified
Thu Nov 8 23:55:20 2007 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk/finley
tests for numerical integration added.
Revision
1340 -
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Modified
Thu Nov 8 06:24:43 2007 UTC
(13 years, 3 months ago)
by
ksteube
Original Path:
trunk/finley
Fixed create a local labeling of the DOFs
Revision
1339 -
Directory Listing
Modified
Wed Nov 7 01:53:12 2007 UTC
(13 years, 3 months ago)
by
ksteube
Original Path:
trunk/finley
Modified scons target release_src to include lib/ and include/ since
their presence is required for a build. Modified
mydomain.print_mesh_info(True) to include more useful info about a
distributed domain. Added mypde.getOperator().print_matrix_info(True)
to tell about a distributed matrix.
Revision
1338 -
Directory Listing
Modified
Mon Nov 5 06:32:29 2007 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk/finley
bug in the selection of the order of the output mesh fixed.
Revision
1335 -
Directory Listing
Modified
Fri Nov 2 05:54:25 2007 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk/finley
color ranges were not initialized.
Revision
1326 -
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Modified
Mon Oct 1 08:10:41 2007 UTC
(13 years, 4 months ago)
by
ksteube
Original Path:
trunk/finley
Implemented domain.print_mesh_info() so we can see the distribution of elements & nodes.
Implemented -DBOUNDS_CHECK to catch an error with periodicN=True.
Revision
1322 -
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Modified
Thu Sep 27 04:40:43 2007 UTC
(13 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Code now compiles and runs on cyclone.hpcu.uq.edu.au.
Had to remove intelc from the SConstruct, but didn't commit that change.
Changed a couple C++ comments to C comments.
Revision
1317 -
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Modified
Tue Sep 25 03:41:48 2007 UTC
(13 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
yet another file copied from MPI branch to trunk
Revision
1315 -
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Modified
Tue Sep 25 02:41:13 2007 UTC
(13 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Copied more files from MPI branch to trunk
Revision
1313 -
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Modified
Tue Sep 25 01:44:26 2007 UTC
(13 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
Copied a handful of files from trunk-mpi-branch into trunk
Revision
1312 -
Directory Listing
Modified
Mon Sep 24 06:18:44 2007 UTC
(13 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
The MPI branch is hereby closed. All future work should be in trunk.
Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.
Revision
1310 -
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Modified
Mon Sep 24 04:00:47 2007 UTC
(13 years, 5 months ago)
by
ksteube
Original Path:
trunk/finley
A few additions to make trunk match trunk-mpi-branch
Revision
1235 -
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Modified
Mon Aug 13 00:25:29 2007 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk/finley
Started the removal of IS_WINDOWS_PLATFORM, and now insis that the windows options file be kept up to date, and be complete.
boost_libs -> boost_lib.
Revision
1221 -
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Modified
Fri Aug 3 00:27:20 2007 UTC
(13 years, 6 months ago)
by
ksteube
Original Path:
trunk/finley
Disabled HRZ lumping until the tests pass
Revision
1220 -
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Modified
Thu Aug 2 04:46:20 2007 UTC
(13 years, 6 months ago)
by
btully
Original Path:
trunk/finley
Included HRZ lumping scheme for the LUMPED solver.
Revision
1204 -
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Modified
Sat Jun 23 11:43:12 2007 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk/finley
a frame for an improved lumping procedure added.
Revision
1198 -
Directory Listing
Modified
Tue Jun 19 00:24:29 2007 UTC
(13 years, 8 months ago)
by
btully
Original Path:
trunk/finley
Updated Rec9 Shape Functions.
Included a new definition for Hex27 Reference Element and associated Shape Functions.
Revision
1185 -
Directory Listing
Modified
Thu May 31 04:33:31 2007 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk/finley
once again: some changes to get the tests passed on windows.
Revision
1181 -
Directory Listing
Modified
Wed May 30 06:08:44 2007 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk/finley
some more test for vtk interface
Revision
1178 -
Directory Listing
Modified
Wed May 30 05:03:17 2007 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk/finley
bug in visualization interface test fixed.
Revision
1174 -
Directory Listing
Modified
Tue May 29 07:05:59 2007 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk/finley
more modifications to the test rquired by the new intergartion schemes
Revision
1171 -
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Modified
Fri May 25 06:55:05 2007 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk/finley
some modifications to the tests to consider the new integration schemes for tri and tet
Revision
1170 -
Directory Listing
Modified
Fri May 25 05:24:57 2007 UTC
(13 years, 9 months ago)
by
btully
Original Path:
trunk/finley
Added new methods for integration of Tri's and Tet's For Order 2 and 3.
NB: There is a conflict in the testing of the getNormal() function. On consultation with Lutz, we have concluded this is an issue with the test rather than the new methods.
Revision
1163 -
Directory Listing
Modified
Wed May 23 23:56:39 2007 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk/finley
import of DISPLAY environment variable into scons ENV added. This is required to run pyvisi tests under XGL
Revision
1149 -
Directory Listing
Modified
Thu May 17 00:30:15 2007 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk/finley
some fixes from the windows version
Revision
1141 -
Directory Listing
Modified
Tue May 15 04:24:51 2007 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk/finley
Some changes to make things run on windows. There is still a problem with netcdf an long file names on windows but there is the suspicion that this is a bigger problem related to boost (compiler options). In fact runs with large numbers of iteration/time steps tend to create seg faults.
Revision
1139 -
Directory Listing
Modified
Mon May 14 05:12:53 2007 UTC
(13 years, 9 months ago)
by
ksteube
Original Path:
trunk/finley
Finished renaming of boost_lib to boost_libs and boost_lib_path to boost_libs_path.
Revision
1137 -
Directory Listing
Modified
Thu May 10 08:11:31 2007 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk/finley
This version passes the tests on windows except for
* vtk
* netCDF
The version needs to be tested on altix and linux
Revision
1135 -
Directory Listing
Modified
Wed May 9 01:58:32 2007 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk/finley
These are still modifications for windows.
The run_generators.py and run_visualization_interface.py pass now. There is no need for the win32 reference directory.
Revision
1134 -
Directory Listing
Modified
Wed May 9 01:44:04 2007 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk/finley
fixed a bag in the extra bits to make the ordering unique. This does not effect the correctness of the result but makes sure that the results are independent from the sorting algorithm.
Revision
1133 -
Directory Listing
Modified
Tue May 8 07:19:33 2007 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk/finley
Changes needed for windows. This still does not work on and has not run on linux and the altix.
There are a few changes in names in the scons script, in particular _libs is used rather than _lib and _libs is always a list. By default on windows MSVC is used. The location of python is at C:\Program Files\python<version>, boost at C:\Program Files\boost and netcdf at C:\Program Files\netcdf.
Revision
1116 -
Directory Listing
Modified
Mon Apr 23 03:36:34 2007 UTC
(13 years, 10 months ago)
by
gross
Original Path:
trunk/finley
Interporpolation from full to reduced integration order added.
Revision
1107 -
Directory Listing
Modified
Thu Apr 19 02:14:18 2007 UTC
(13 years, 10 months ago)
by
gross
Original Path:
trunk/finley
Small bug in ReadMeh call fixed.
Test for typ of verbose argument in pdetools.SaddlePointSolver added.
Revision
1092 -
Directory Listing
Modified
Fri Apr 13 03:39:49 2007 UTC
(13 years, 10 months ago)
by
gross
Original Path:
trunk/finley
the useless profilinf for data.cpp removed (doDebug=yes should work again)
and a small bug in the gmsh reader fixed.
Revision
1072 -
Directory Listing
Modified
Thu Mar 29 06:44:30 2007 UTC
(13 years, 11 months ago)
by
gross
Original Path:
trunk/finley
PDE assemblage for reduced integration order + tests added.
Revision
1065 -
Directory Listing
Modified
Tue Mar 27 09:04:56 2007 UTC
(13 years, 11 months ago)
by
gross
Original Path:
trunk/finley
tests VTK + DX files for reduced integration order added. Tests pass.
Revision
1064 -
Directory Listing
Modified
Tue Mar 27 06:21:02 2007 UTC
(13 years, 11 months ago)
by
gross
Original Path:
trunk/finley
test for reduced integration order for grad, interpolate and integrate added.
Bug shown by the tests have been fixed.
Revision
1063 -
Directory Listing
Modified
Mon Mar 26 08:29:18 2007 UTC
(13 years, 11 months ago)
by
gross
Original Path:
trunk/finley
test for creation of reduced function spaces added.
tests for dumping data on reduced function spaces added.
This showed a small bug with compilation setting for compilation with netCDF which is fixed
Revision
1062 -
Directory Listing
Modified
Mon Mar 26 06:17:53 2007 UTC
(13 years, 11 months ago)
by
gross
Original Path:
trunk/finley
reduced integration schemes are implemented now for grad, integrate, etc. Tests still to be added.
Revision
1059 -
Directory Listing
Modified
Fri Mar 23 11:01:53 2007 UTC
(13 years, 11 months ago)
by
gross
Original Path:
trunk/finley
first steps toward reduced element integration order. The escript bit is done but the finley part still needs work.
Revision
1049 -
Directory Listing
Modified
Tue Mar 20 03:00:18 2007 UTC
(13 years, 11 months ago)
by
gross
Original Path:
trunk/finley
bandwidth optimizer has been moved back (Lutz: switch on your brain.
)
Revision
1048 -
Directory Listing
Modified
Tue Mar 20 02:59:14 2007 UTC
(13 years, 11 months ago)
by
gross
Original Path:
trunk/finley
bandwidth optimizer has been moved.
Revision
1046 -
Directory Listing
Modified
Tue Mar 20 02:52:24 2007 UTC
(13 years, 11 months ago)
by
gross
Original Path:
trunk/finley
the finley benchmarks have been moved into a seperate directory to get keep them out off the building process.
Revision
1044 -
Directory Listing
Modified
Mon Mar 19 07:29:31 2007 UTC
(13 years, 11 months ago)
by
gross
Original Path:
trunk/finley
clear name tagging is supported now.
Revision
1030 -
Directory Listing
Modified
Wed Mar 14 05:14:44 2007 UTC
(13 years, 11 months ago)
by
phornby
Original Path:
trunk/finley
Assemble_CopyElementData.c - resolve with my local edits.
Mesh_saveVTK.c - remove debug print.
DataArrayView.h - remove dllim/export declarations on template functions.
Revision
1028 -
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Modified
Wed Mar 14 00:15:24 2007 UTC
(13 years, 11 months ago)
by
gross
Original Path:
trunk/finley
modifications to be compliant with _WIN32. The substitutes for asinh, acosh, atanh are still missing (erf will through an exception)
Revision
1022 -
Directory Listing
Modified
Tue Mar 13 02:25:53 2007 UTC
(13 years, 11 months ago)
by
phornby
Original Path:
trunk/finley
Now define the destructors for all the Exceptions (sorry guys & gals).
Revision
1020 -
Directory Listing
Modified
Mon Mar 12 10:12:36 2007 UTC
(13 years, 11 months ago)
by
phornby
Original Path:
trunk/finley
Added explicit destructors to all Exception classes.
Fixed an ifdef in TestCase.cpp
Made the conditional definition of M_PI in LocalOps.h
depend only on M_PI being undefined.
Replace dynamically dimensioned arrays in DataFactory & DataTagged with malloc.
sort() method of list does not take a named argument
(despite the manual's claims to the contary).
Revision
1003 -
Directory Listing
Modified
Thu Mar 1 01:53:37 2007 UTC
(13 years, 11 months ago)
by
gross
Original Path:
trunk/finley
small fix on the finley gmsh reader for the case of no face elements.
Revision
990 -
Directory Listing
Modified
Wed Feb 21 04:27:52 2007 UTC
(14 years ago)
by
ksteube
Original Path:
trunk/finley
Cleaned up the python in-line doc to make epydoc work better
Configured for shake71 to find NetCDF libraries
Revision
983 -
Directory Listing
Modified
Tue Feb 20 02:49:08 2007 UTC
(14 years ago)
by
gross
Original Path:
trunk/finley
full Data object dump and load now available. Tests added.
Revision
982 -
Directory Listing
Modified
Mon Feb 19 23:55:52 2007 UTC
(14 years ago)
by
gross
Original Path:
trunk/finley
data object load checks for sample ordering now.
Revision
971 -
Directory Listing
Modified
Wed Feb 14 04:40:49 2007 UTC
(14 years ago)
by
ksteube
Original Path:
trunk/finley
Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.
Revision
969 -
Directory Listing
Modified
Tue Feb 13 23:02:23 2007 UTC
(14 years ago)
by
ksteube
Original Path:
trunk/finley
Parallelization using MPI for solution of implicit problems.
Parallelization for explicit problems has already been accomplished in
the main SVN branch.
This is incomplete and is not ready for use.
Revision
967 -
Directory Listing
Modified
Tue Feb 13 09:40:12 2007 UTC
(14 years ago)
by
gross
Original Path:
trunk/finley
dump and load of expanded data via netCDF added. some test are still missing.
Revision
964 -
Directory Listing
Modified
Tue Feb 13 05:10:26 2007 UTC
(14 years ago)
by
gross
Original Path:
trunk/finley
The set/getRefVal functions of Data objects have been removed (mainly to avoid later problems with MPI).
Moreover, a faster access to the reference id of samples has been introduced. I don't think that anybody will
profit form this at this stage but it will allow a faster dump of data objects.
Revision
950 -
Directory Listing
Modified
Tue Feb 6 07:01:11 2007 UTC
(14 years ago)
by
gross
Original Path:
trunk/finley
escript data objects can now be saved to netCDF files, see http://www.unidata.ucar.edu/software/netcdf/.
Currently only constant data are implemented with expanded and tagged data to follow.
There are two new functions to dump a data object
s=Data(...)
s.dump(<filename>)
and to recover it
s=load(<filename>, domain)
Notice that the function space of s is recovered but domain is still need.
dump and load will replace archive and extract.
The installation needs now the netCDF installed.
Revision
940 -
Directory Listing
Modified
Mon Jan 29 00:09:08 2007 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk/finley
ivdep removed as it produces wrong results with OPenMP
Revision
939 -
Directory Listing
Modified
Thu Jan 25 04:23:38 2007 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk/finley
bug in finley mesh reader fixed
Revision
929 -
Directory Listing
Modified
Wed Jan 17 07:41:13 2007 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk/finley
reverse orientation added but does not work for 2D yet.
Revision
903 -
Directory Listing
Modified
Fri Nov 17 01:59:49 2006 UTC
(14 years, 3 months ago)
by
gross
Original Path:
trunk/finley
bug with tagged data in vtk and dx writer fixed
Revision
895 -
Directory Listing
Modified
Thu Nov 9 05:45:55 2006 UTC
(14 years, 3 months ago)
by
gross
Original Path:
trunk/finley
moved to make plave for better version
Revision
888 -
Directory Listing
Modified
Tue Nov 7 08:31:26 2006 UTC
(14 years, 3 months ago)
by
gross
Original Path:
trunk/finley
Problem in Mesh_findMatchingFaces.c fixed:
default tolerance in python interface was set too tight.
Revision
887 -
Directory Listing
Modified
Thu Nov 2 07:17:07 2006 UTC
(14 years, 3 months ago)
by
gross
Original Path:
trunk/finley
some more work on the slip distribution
Revision
884 -
Directory Listing
Modified
Mon Oct 30 06:37:30 2006 UTC
(14 years, 3 months ago)
by
gross
Original Path:
trunk/finley
simple mesh generator for slip_stress
Revision
877 -
Directory Listing
Modified
Wed Oct 25 03:06:58 2006 UTC
(14 years, 4 months ago)
by
gross
Original Path:
trunk/finley
backtraking in the saddlepoint problem (not perfect yet)
Revision
873 -
Directory Listing
Modified
Mon Oct 16 04:07:33 2006 UTC
(14 years, 4 months ago)
by
gross
Original Path:
trunk/finley
uszawa scheme runs with variable viscosity
Revision
865 -
Directory Listing
Modified
Fri Oct 6 10:02:18 2006 UTC
(14 years, 4 months ago)
by
gross
Original Path:
trunk/finley
some functions for minimizing a function added. there is still some work required but successfully applied in an aplication
Revision
862 -
Directory Listing
Modified
Tue Oct 3 06:01:30 2006 UTC
(14 years, 4 months ago)
by
gross
Original Path:
trunk/finley
bug in mesh generator fixed.
Revision
859 -
Directory Listing
Modified
Tue Sep 26 02:19:18 2006 UTC
(14 years, 5 months ago)
by
gross
Original Path:
trunk/finley
tests for order2 tetrahedron elements added
Revision
857 -
Directory Listing
Modified
Tue Sep 26 01:00:45 2006 UTC
(14 years, 5 months ago)
by
gross
Original Path:
trunk/finley
tests for order1 tetrahedron elements added
Revision
855 -
Directory Listing
Modified
Fri Sep 22 09:30:06 2006 UTC
(14 years, 5 months ago)
by
gross
Original Path:
trunk/finley
some tests for triangle meshes added
Revision
853 -
Directory Listing
Modified
Wed Sep 20 05:56:36 2006 UTC
(14 years, 5 months ago)
by
gross
Original Path:
trunk/finley
some performance problems wit openmp fixed.
Revision
850 -
Directory Listing
Modified
Sun Sep 17 23:27:00 2006 UTC
(14 years, 5 months ago)
by
gross
Original Path:
trunk/finley
some problems with vtk writer fixed
Revision
842 -
Directory Listing
Modified
Thu Sep 7 05:40:22 2006 UTC
(14 years, 5 months ago)
by
gross
Original Path:
trunk/finley
a little wave propagation simulation
Revision
820 -
Directory Listing
Modified
Mon Aug 28 06:55:36 2006 UTC
(14 years, 6 months ago)
by
gross
Original Path:
trunk/finley
make the modelframe test run
Revision
817 -
Directory Listing
Modified
Sat Aug 26 03:08:52 2006 UTC
(14 years, 6 months ago)
by
ksteube
Original Path:
trunk/finley
Can now compile and run with MPI on shake71
Revision
815 -
Directory Listing
Modified
Wed Aug 23 09:31:50 2006 UTC
(14 years, 6 months ago)
by
gross
Original Path:
trunk/finley
ops! wrong file has been sent
Revision
814 -
Directory Listing
Modified
Wed Aug 23 09:31:10 2006 UTC
(14 years, 6 months ago)
by
gross
Original Path:
trunk/finley
small bug in general tensor propduct fixed
Revision
808 -
Directory Listing
Modified
Fri Aug 11 01:25:16 2006 UTC
(14 years, 6 months ago)
by
ksteube
Original Path:
trunk/finley
Can now build escript and use doxygen on shake71
Revision
806 -
Directory Listing
Modified
Thu Aug 10 11:58:52 2006 UTC
(14 years, 6 months ago)
by
gross
Original Path:
trunk/finley
Interface to the direct solver library UMLPACK is no implemented.
Revision
799 -
Directory Listing
Modified
Mon Aug 7 23:30:53 2006 UTC
(14 years, 6 months ago)
by
ksteube
Original Path:
trunk/finley
Moved a #pragma to modify the appropriate line
Revision
798 -
Directory Listing
Modified
Fri Aug 4 01:05:36 2006 UTC
(14 years, 6 months ago)
by
gross
Original Path:
trunk/finley
Reimplementation of the assemblage with persistent jacobeans.
There are also a few changes to the tests which has now
dramatically reduced the memory demand.
Revision
796 -
Directory Listing
Modified
Mon Jul 31 06:16:17 2006 UTC
(14 years, 6 months ago)
by
dhawcroft
Original Path:
trunk/finley
much faster parallel saveVTK
needs testers, don't be shy
Revision
793 -
Directory Listing
Modified
Sat Jul 29 19:40:22 2006 UTC
(14 years, 7 months ago)
by
dhawcroft
Original Path:
trunk/finley
Preliminary MPI version of saveVTK. Needs testers. Works for point data and should work for cell centered data.
Revision
788 -
Directory Listing
Modified
Wed Jul 26 05:12:15 2006 UTC
(14 years, 7 months ago)
by
bcumming
Original Path:
trunk/finley
small corrections to code in previous commit, and some header files that
should have been included in the last commit.
Revision
787 -
Directory Listing
Modified
Wed Jul 26 01:46:45 2006 UTC
(14 years, 7 months ago)
by
bcumming
Original Path:
trunk/finley
MPI update
Each element (normal elements, faceElements, ContactElements and points)
are now assigned a unique global id to streamline per-element
calculations and file IO of element data.
Revision
783 -
Directory Listing
Modified
Tue Jul 18 01:32:50 2006 UTC
(14 years, 7 months ago)
by
gross
Original Path:
trunk/finley
coordinates, element size and normals returned by corresponding
FunctionSpace mesthods are now protected against updates. So
+=, -=, *=, /=, setTaggedValue, fillFromNumArray will through an
excpetion.
The FunctionSpace class does nut buffer the oordinates, element size and
normals yet.
Revision
782 -
Directory Listing
Modified
Tue Jul 18 00:47:47 2006 UTC
(14 years, 7 months ago)
by
bcumming
Original Path:
trunk/finley
Large number of changes to Finley for meshing in MPI.
- optimisation and neatening up of rectcanglular mesh generation code
- first and second order 1D, 2D and 3D rectangular meshes are now
available in finley and escript using MPI.
- reduced meshes now generated in MPI, and interpolation to and from
reduced data types now supported.
Revision
781 -
Directory Listing
Modified
Fri Jul 14 08:47:38 2006 UTC
(14 years, 7 months ago)
by
gross
Original Path:
trunk/finley
grad functions linked into the persistent jacobean scheme
Revision
779 -
Directory Listing
Modified
Fri Jul 14 07:41:31 2006 UTC
(14 years, 7 months ago)
by
woo409
Original Path:
trunk/finley
+ Updated compilation options for Cognac to squeeze out a bit more performance
+ Now compiles using the Intel Math headers (mathimf.h) rather than plain math.h on both Win32 and Linux platforms when using the Intel compiler. Gives a small boost to performance on Altix and is essential on Windows
Revision
778 -
Directory Listing
Modified
Thu Jul 13 02:27:45 2006 UTC
(14 years, 7 months ago)
by
gross
Original Path:
trunk/finley
add a switch to stop calls of external solver libraries
Revision
777 -
Directory Listing
Modified
Wed Jul 12 08:54:45 2006 UTC
(14 years, 7 months ago)
by
gross
Original Path:
trunk/finley
integration with persistent jacobeans is running now
Revision
776 -
Directory Listing
Modified
Wed Jul 12 00:07:31 2006 UTC
(14 years, 7 months ago)
by
gross
Original Path:
trunk/finley
basic code for persistence of jacobeans added. routines are not called yet
Revision
769 -
Directory Listing
Modified
Sun Jul 2 23:58:22 2006 UTC
(14 years, 7 months ago)
by
gross
Original Path:
trunk/finley
A bit more tests are generated now. Ther is still a problem with the slection of the solution order.
Revision
768 -
Directory Listing
Modified
Fri Jun 30 09:26:16 2006 UTC
(14 years, 8 months ago)
by
gross
Original Path:
trunk/finley
and the generation of tests for contact elements works now.
Revision
767 -
Directory Listing
Modified
Fri Jun 30 07:29:08 2006 UTC
(14 years, 8 months ago)
by
gross
Original Path:
trunk/finley
new FunctionSpace method setTags added
Revision
766 -
Directory Listing
Modified
Fri Jun 30 06:44:14 2006 UTC
(14 years, 8 months ago)
by
gross
Original Path:
trunk/finley
modified version of a test generator (private use)
Revision
765 -
Directory Listing
Modified
Fri Jun 30 06:37:11 2006 UTC
(14 years, 8 months ago)
by
gross
Original Path:
trunk/finley
The test for the contact normal has been modified to take in cosideration the fact that the normal is unique up to the factor +/-1.
Now the test checks the kllength of the normal for 1 and the angle to the reference normal.
Revision
763 -
Directory Listing
Modified
Fri Jun 30 05:52:31 2006 UTC
(14 years, 8 months ago)
by
gross
Original Path:
trunk/finley
some modification in the element reordering which should solve some problems
caused by the fact that qsort may handels == items differently on different platform.
Revision
759 -
Directory Listing
Modified
Thu Jun 29 01:53:23 2006 UTC
(14 years, 8 months ago)
by
bcumming
Original Path:
trunk/finley
- added directory pythonMPI to the source tree. this directory contains
the c++ wrapper that is used to run python scripts in parallel for the
MPI version of escript/finley
- updated the SConstruct and ./scons/ess_options.py for conditional MPI
compilation. To compile the MPI version on ESS uncomment the #define
PASO_MPI in ./paso/src/Paso.h and add the command line option
useMPI=yes when running scons.
- fixed a compile time error in the MPI build in
finley/src/CPPAdapter/MeshAdapterFactory.cpp
Revision
757 -
Directory Listing
Modified
Mon Jun 26 13:12:56 2006 UTC
(14 years, 8 months ago)
by
woo409
Original Path:
trunk/finley
+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)
Revision
751 -
Directory Listing
Modified
Mon Jun 26 01:46:34 2006 UTC
(14 years, 8 months ago)
by
bcumming
Original Path:
trunk/finley
Changes relating to the MPI version of escript
The standard OpenMP version of escript is unchanged
- updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes
over multiple MPI processes.
- added CommBuffer code in Paso for communication of Data associated
with distributed meshes
- updates in Finley and Escript to support distributed data and operations
on distributed data (such as interpolation).
- construction of RHS in MPI, so that simple explicit schemes (such as
/docs/examples/wave.py without IO and the Locator) can run in MPI.
- updated mesh generation for first order line, rectangle and brick
meshes and second order line meshes in MPI.
- small changes to trunk/SConstruct and trunk/scons/ess_options.py to
build the MPI version, these changes are turned off by default.
Revision
727 -
Directory Listing
Modified
Fri May 12 06:31:06 2006 UTC
(14 years, 9 months ago)
by
gross
Original Path:
trunk/finley
In case of an error in paso a seg fault occured. this was caused by
inproper deallocation of memory in this case. this problem is fixed now.
Revision
720 -
Directory Listing
Modified
Thu Apr 27 10:16:05 2006 UTC
(14 years, 10 months ago)
by
gross
Original Path:
trunk/finley
formatting errors in epydoc tags fixed
Revision
709 -
Directory Listing
Modified
Wed Apr 26 06:35:36 2006 UTC
(14 years, 10 months ago)
by
gross
Original Path:
trunk/finley
fixes to get scons py_tests going: mainly fixes in the pathes
Revision
707 -
Directory Listing
Modified
Wed Apr 12 23:58:02 2006 UTC
(14 years, 10 months ago)
by
gross
Original Path:
trunk/finley
latex build documentation is working now
Revision
706 -
Directory Listing
Modified
Sat Apr 8 16:13:02 2006 UTC
(14 years, 10 months ago)
by
gross
Original Path:
trunk/finley
python tests compile and run but there is still a problem with dependencies'
Revision
705 -
Directory Listing
Modified
Fri Apr 7 17:57:37 2006 UTC
(14 years, 10 months ago)
by
gross
Original Path:
trunk/finley
python tests are allmost working
Revision
700 -
Directory Listing
Modified
Thu Apr 6 00:13:40 2006 UTC
(14 years, 10 months ago)
by
gross
Original Path:
trunk/finley
A few changes in the build mechanism and the file structure so scons can build release tar files:
* paso/src/Solver has been moved to paso/src
* all test_.py are now run_.py files and are assumed to be passing python tests. they can run by
scons py_tests and are part of the release test set
* escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory
(rather then the PYTHONPATH).
* all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i
by not run automatically.
* CppUnitTest is now treated as a escript module (against previous decisions).
* scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files)
the python tests don't pass yet due to path problems.
Revision
699 -
Directory Listing
Modified
Fri Mar 31 06:27:56 2006 UTC
(14 years, 10 months ago)
by
gross
Original Path:
trunk/finley
now float**Data is running
Revision
698 -
Directory Listing
Modified
Fri Mar 31 04:52:55 2006 UTC
(14 years, 10 months ago)
by
gross
Original Path:
trunk/finley
test with tagged data pass now
Revision
692 -
Directory Listing
Modified
Thu Mar 30 08:05:02 2006 UTC
(14 years, 11 months ago)
by
gross
Original Path:
trunk/finley
test with tagged data still fail and switched off
Revision
690 -
Directory Listing
Modified
Tue Mar 28 07:18:51 2006 UTC
(14 years, 11 months ago)
by
robwdcock
Original Path:
trunk/finley
+ Added basic_py_tests target which will run the basic set of python tests. The list of python tests was taken from autoscons
Revision
682 -
Directory Listing
Modified
Mon Mar 27 02:43:09 2006 UTC
(14 years, 11 months ago)
by
robwdcock
Original Path:
trunk/finley
+ NEW BUILD SYSTEM
This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.
ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows
module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3
Revision
643 -
Directory Listing
Modified
Fri Mar 24 00:28:41 2006 UTC
(14 years, 11 months ago)
by
elspeth
Original Path:
trunk/finley
More copyright info added.
Revision
637 -
Directory Listing
Modified
Thu Mar 23 10:55:31 2006 UTC
(14 years, 11 months ago)
by
gross
Original Path:
trunk/finley
more copyright statements added
Revision
626 -
Directory Listing
Modified
Thu Mar 23 02:16:36 2006 UTC
(14 years, 11 months ago)
by
elspeth
Original Path:
trunk/finley
Copyright information inserted
Revision
620 -
Directory Listing
Modified
Wed Mar 22 07:43:42 2006 UTC
(14 years, 11 months ago)
by
gross
Original Path:
trunk/finley
problem with tagged data isolated
Revision
616 -
Directory Listing
Modified
Wed Mar 22 02:46:56 2006 UTC
(14 years, 11 months ago)
by
elspeth
Original Path:
trunk/finley
Copyright added to more source files.
Revision
602 -
Directory Listing
Modified
Fri Mar 17 06:57:46 2006 UTC
(14 years, 11 months ago)
by
gross
Original Path:
trunk/finley
more work on pyvisi integration
Revision
595 -
Directory Listing
Modified
Tue Mar 14 23:52:45 2006 UTC
(14 years, 11 months ago)
by
gross
Original Path:
trunk/finley
test_utilOnFinley fixed (did run the tests that still fail)
Revision
584 -
Directory Listing
Modified
Thu Mar 9 23:03:38 2006 UTC
(14 years, 11 months ago)
by
gross
Original Path:
trunk/finley
eigenvalues: compiles and passes tests on altix now
Revision
580 -
Directory Listing
Modified
Wed Mar 8 05:45:51 2006 UTC
(14 years, 11 months ago)
by
gross
Original Path:
trunk/finley
faster version of the local eigenvalue calculation
Revision
558 -
Directory Listing
Modified
Thu Feb 23 01:02:31 2006 UTC
(15 years ago)
by
gross
Original Path:
trunk/finley
switch back to test on no tagged data
Revision
552 -
Directory Listing
Modified
Wed Feb 22 03:18:07 2006 UTC
(15 years ago)
by
gross
Original Path:
trunk/finley
and more work on saving the element jacobians (please don;t look at the code)
Revision
547 -
Directory Listing
Modified
Tue Feb 21 06:10:54 2006 UTC
(15 years ago)
by
gross
Original Path:
trunk/finley
solution and reduced solution can have reference numbers now!
Revision
532 -
Directory Listing
Modified
Wed Feb 15 09:45:53 2006 UTC
(15 years ago)
by
gross
Original Path:
trunk/finley
first steps towards the reuse of the element jacobians
Revision
484 -
Directory Listing
Modified
Thu Feb 2 02:12:08 2006 UTC
(15 years ago)
by
jgs
Original Path:
trunk/finley
add remainder of includes to SConscript includes install
Revision
481 -
Directory Listing
Modified
Wed Feb 1 05:57:50 2006 UTC
(15 years ago)
by
jgs
Original Path:
trunk/finley
add mechanism to install .h files to inc directories
(still need to specify full lists of .h files to install)
Revision
480 -
Directory Listing
Modified
Wed Feb 1 05:15:12 2006 UTC
(15 years ago)
by
jgs
Original Path:
trunk/finley
rationalise #includes and forward declarations
Revision
474 -
Directory Listing
Modified
Mon Jan 30 04:23:44 2006 UTC
(15 years ago)
by
jgs
Original Path:
trunk/finley
restructure escript source tree
move src/Data/* -> src
remove inc
modify #includes and cpppath settings accordingly
Revision
473 -
Directory Listing
Modified
Fri Jan 27 01:59:09 2006 UTC
(15 years, 1 month ago)
by
jgs
Original Path:
trunk/finley
make adjustments to allow for new source tree structure
Revision
471 -
Directory Listing
Modified
Fri Jan 27 01:33:02 2006 UTC
(15 years, 1 month ago)
by
jgs
Original Path:
trunk/finley
reorganise finley src tree to remove inc dir and src/finley directory
Revision
468 -
Directory Listing
Modified
Wed Jan 25 06:50:39 2006 UTC
(15 years, 1 month ago)
by
jgs
Original Path:
trunk/finley
reorganised esysUtils to remove inc directory
Revision
467 -
Directory Listing
Modified
Wed Jan 25 05:43:46 2006 UTC
(15 years, 1 month ago)
by
jgs
Original Path:
trunk/finley
adjustments to includes to allow for new paso src tree structure
Revision
464 -
Directory Listing
Modified
Wed Jan 25 00:42:41 2006 UTC
(15 years, 1 month ago)
by
gross
Original Path:
trunk/finley
typo fixed: the anisotropic problems are returneing the correct answer now.
Revision
457 -
Directory Listing
Modified
Tue Jan 24 06:13:03 2006 UTC
(15 years, 1 month ago)
by
jgs
Original Path:
trunk/finley
fix installation to directories specified by pyinstall and libinstall
Revision
455 -
Directory Listing
Modified
Tue Jan 24 04:36:54 2006 UTC
(15 years, 1 month ago)
by
jgs
Original Path:
trunk/finley
minor comment and formatting changes
Revision
454 -
Directory Listing
Modified
Tue Jan 24 01:34:31 2006 UTC
(15 years, 1 month ago)
by
jgs
Original Path:
trunk/finley
replace libdir default settings - SConstruct was broken without them
Revision
450 -
Directory Listing
Modified
Mon Jan 23 05:04:45 2006 UTC
(15 years, 1 month ago)
by
jgs
Original Path:
trunk/finley
remove old make based build system
Revision
449 -
Directory Listing
Modified
Mon Jan 23 03:48:51 2006 UTC
(15 years, 1 month ago)
by
jgs
Original Path:
trunk/finley
finley source directories now merged into one directory: src/finley
Revision
447 -
Directory Listing
Modified
Mon Jan 23 02:59:59 2006 UTC
(15 years, 1 month ago)
by
gross
Original Path:
trunk/finley
a simple linear elastic solver
Revision
442 -
Directory Listing
Modified
Fri Jan 20 04:39:43 2006 UTC
(15 years, 1 month ago)
by
gross
Original Path:
trunk/finley
kronecker (and relatives) take now a FunctionSpace as argument and return a Data object in tthis functionspace
Revision
437 -
Directory Listing
Modified
Fri Jan 20 00:16:58 2006 UTC
(15 years, 1 month ago)
by
gross
Original Path:
trunk/finley
comprehensive testing for integrate function added. tests for grad will be added in the next check in. GradTest is obsolete now.
Revision
430 -
Directory Listing
Modified
Wed Jan 11 06:40:50 2006 UTC
(15 years, 1 month ago)
by
gross
Original Path:
trunk/finley
ILU has been replicated is called RILU (recursive ILU) now. ILU will now be reimplemented.
Revision
428 -
Directory Listing
Modified
Wed Jan 11 01:38:16 2006 UTC
(15 years, 1 month ago)
by
gross
Original Path:
trunk/finley
interplotared is changed from method to function call
Revision
425 -
Directory Listing
Modified
Tue Jan 10 04:10:39 2006 UTC
(15 years, 1 month ago)
by
gross
Original Path:
trunk/finley
The sparse solver can be called by paso now.
the building has been change to reduce some code redundancy:
now all scons SCscripts are importing scons/esys_options.py which
imports platform specific settings.
Revision
423 -
Directory Listing
Modified
Fri Jan 6 08:09:43 2006 UTC
(15 years, 1 month ago)
by
gross
Original Path:
trunk/finley
some modifications in visualization to get equidistant output
Revision
416 -
Directory Listing
Modified
Wed Jan 4 05:38:35 2006 UTC
(15 years, 1 month ago)
by
gross
Original Path:
trunk/finley
changes in Paso have been worked in
Revision
404 -
Directory Listing
Modified
Thu Dec 22 23:04:55 2005 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/finley
direct solver works for symmetry flag now
Revision
399 -
Directory Listing
Modified
Wed Dec 21 22:43:48 2005 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/finley
frame to run a single test out of the test_util suite
Revision
383 -
Directory Listing
Modified
Mon Dec 19 06:10:45 2005 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/finley
Finley options added plus some other stuff
Revision
381 -
Directory Listing
Modified
Mon Dec 19 03:15:44 2005 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/finley
first version of a finley benchmark suite for test the paso solver
Revision
362 -
Directory Listing
Modified
Thu Dec 15 02:07:55 2005 UTC
(15 years, 2 months ago)
by
jgs
Original Path:
trunk/finley
removed unit-test runner scripts as unit-tests now run from scons
Revision
360 -
Directory Listing
Modified
Thu Dec 15 01:52:16 2005 UTC
(15 years, 2 months ago)
by
jgs
Original Path:
trunk/finley
add target to run all unit tests, the build will fail
for this target if any unit test fails
Revision
355 -
Directory Listing
Modified
Wed Dec 14 05:05:31 2005 UTC
(15 years, 2 months ago)
by
jgs
Original Path:
trunk/finley
add explicit target for building of unit tests
Revision
352 -
Directory Listing
Modified
Wed Dec 14 02:21:37 2005 UTC
(15 years, 2 months ago)
by
jgs
Original Path:
trunk/finley
turns out Install() targets should also be made Default()
targets if you want them to actually reliably work!
Revision
340 -
Directory Listing
Modified
Mon Dec 12 05:10:45 2005 UTC
(15 years, 2 months ago)
by
jgs
Original Path:
trunk/finley
pass in pyinstall value from top-level scons script and add
correct suffix in module level scons scipr
Revision
325 -
Directory Listing
Modified
Wed Dec 7 02:08:17 2005 UTC
(15 years, 2 months ago)
by
jgs
Original Path:
trunk/finley
now determine hostname via socket.gethostname() as HOSTNAME
environment variable is apparently not set on all platforms
Revision
324 -
Directory Listing
Modified
Wed Dec 7 01:10:36 2005 UTC
(15 years, 2 months ago)
by
jgs
Original Path:
trunk/finley
add symlinks to include files - previously added by hand as cvs couldn't
handle them
Revision
309 -
Directory Listing
Modified
Mon Dec 5 01:59:58 2005 UTC
(15 years, 2 months ago)
by
jgs
Original Path:
trunk/finley
now load default options - by default!
Revision
294 -
Directory Listing
Modified
Fri Dec 2 03:47:30 2005 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/finley
test of symbols.py with python
Revision
288 -
Directory Listing
Modified
Fri Dec 2 01:55:04 2005 UTC
(15 years, 2 months ago)
by
jgs
Original Path:
trunk/finley
now automatically build unit tests as required based on dependencies
between unit tests and libraries
Revision
277 -
Directory Listing
Modified
Wed Nov 30 04:52:39 2005 UTC
(15 years, 2 months ago)
by
jgs
Original Path:
trunk/finley
explicitly define dependencies between modules
Revision
273 -
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Modified
Wed Nov 30 03:30:40 2005 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/finley
cast to float added. this avoids problems with very small values
Revision
272 -
Directory Listing
Modified
Wed Nov 30 03:30:30 2005 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/finley
cast to float added. this avoids problems with very small coodinates.
Revision
271 -
Directory Listing
Modified
Wed Nov 30 03:27:30 2005 UTC
(15 years, 2 months ago)
by
gross
Original Path:
trunk/finley
cast to float added. this avoids problems with very small values
Revision
268 -
Directory Listing
Modified
Wed Nov 30 01:39:47 2005 UTC
(15 years, 2 months ago)
by
jgs
Original Path:
trunk/finley
setup scons configuration to make and install python code
Revision
255 -
Directory Listing
Modified
Tue Nov 29 06:13:22 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
pass in solver libraries to link with via options files now
Revision
252 -
Directory Listing
Modified
Tue Nov 29 05:58:03 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
pass in platform specific libraries via options files now
Revision
249 -
Directory Listing
Modified
Tue Nov 29 05:29:09 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
fix compiler options to enable compilation on gcc platforms
Revision
248 -
Directory Listing
Modified
Tue Nov 29 04:58:23 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
add top level scons config files to allow building
of all unit tests for each module at once
Revision
246 -
Directory Listing
Modified
Tue Nov 29 04:27:00 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
allow compile options to be loaded from a config
file specified on the command line to scons
Revision
241 -
Directory Listing
Modified
Mon Nov 28 06:14:47 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
if usegcc=1 is set on command line, load compiler options
fropm scons/gcc_options.py
Revision
239 -
Directory Listing
Modified
Mon Nov 28 05:49:32 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
read names of python and boost libraries from config file now
Revision
228 -
Directory Listing
Modified
Fri Nov 25 02:01:14 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
now read compile options from options file
Revision
224 -
Directory Listing
Modified
Fri Nov 25 00:33:27 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
implement switching of debug compiler options based on command line flag 'debug'
Revision
223 -
Directory Listing
Modified
Thu Nov 24 23:12:13 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
pass in cc/cxx settings from config file
Revision
216 -
Directory Listing
Modified
Thu Nov 24 06:35:14 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
first pass at importing compile options from an external file'
Revision
214 -
Directory Listing
Modified
Thu Nov 24 05:15:26 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
collect all information needed to determine build
configuration (ie: debug/nodebug, host, platform etc)
Revision
206 -
Directory Listing
Modified
Wed Nov 23 05:03:42 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
remove MeshAdapter test for now - will only work with scons build system
Revision
205 -
Directory Listing
Modified
Wed Nov 23 05:02:59 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
fix settings to account for new finley source tree structure
Revision
204 -
Directory Listing
Modified
Wed Nov 23 04:43:51 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
revised scons files to account for new finley source tree structure
Revision
203 -
Directory Listing
Modified
Wed Nov 23 04:36:15 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
adjust include file names to allow for new finley source tree structure
Revision
202 -
Directory Listing
Modified
Wed Nov 23 04:18:39 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
scons builds will now take place in parallel "finley" src dir
Revision
201 -
Directory Listing
Modified
Wed Nov 23 04:10:21 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
copy finleyC and CPPAdapter to finley and finley/CPPAdapter to
facilitate scons builds
Revision
192 -
Directory Listing
Modified
Mon Nov 21 04:52:14 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
pass in top level install directory for finley/escript/bruce/paso
libraries when building via top level scons script
Revision
191 -
Directory Listing
Modified
Mon Nov 21 04:10:12 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
push platform dependent compiler flags and include directories up to library level scons files - these will eventually be brought in from external config files
Revision
190 -
Directory Listing
Modified
Mon Nov 21 03:27:42 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
pass in value for esysroot and use this to determine include file locations
Revision
188 -
Directory Listing
Modified
Mon Nov 21 01:20:26 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
explicitly add -fpic option to all compiler options lists
to ensure relocatable code is generated
Revision
183 -
Directory Listing
Modified
Fri Nov 18 05:24:37 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
can now build finleyC/finleycpp concurrently
Revision
182 -
Directory Listing
Modified
Fri Nov 18 05:07:36 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/finley
first draft of config/construct files for finleyC/finleycpp libraries
Revision
154 -
Directory Listing
Modified
Mon Nov 7 05:51:17 2005 UTC
(15 years, 3 months ago)
by
jgs
Original Path:
trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-11-07
Revision
153 -
Directory Listing
Modified
Tue Oct 25 01:51:20 2005 UTC
(15 years, 4 months ago)
by
jgs
Original Path:
trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-10-25
Revision
152 -
Directory Listing
Modified
Fri Oct 21 08:32:21 2005 UTC
(15 years, 4 months ago)
by
phornby
Original Path:
trunk/esys2/finley
DataConstantTestCase.cpp, DataExpandedTestCase.cpp:
Replace
DataExpanded testData1(FunctionSpace(),....)
with
FunctionSpace tmp_fns;
DataExpanded testData1(tmp_fns,shape,data);
for GCC's sake.
Added some profiling to PoissonSolverTest.py.
Revision
151 -
Directory Listing
Modified
Thu Sep 22 01:55:00 2005 UTC
(15 years, 5 months ago)
by
jgs
Original Path:
trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-09-22
Revision
150 -
Directory Listing
Modified
Thu Sep 15 03:44:45 2005 UTC
(15 years, 5 months ago)
by
jgs
Original Path:
trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-09-15
Revision
149 -
Directory Listing
Modified
Thu Sep 1 03:31:39 2005 UTC
(15 years, 5 months ago)
by
jgs
Original Path:
trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-09-01
Revision
148 -
Directory Listing
Modified
Tue Aug 23 01:24:31 2005 UTC
(15 years, 6 months ago)
by
jgs
Original Path:
trunk/esys2/finley
Merge of development branch dev-02 back to main trunk on 2005-08-23
Revision
147 -
Directory Listing
Modified
Fri Aug 12 01:45:47 2005 UTC
(15 years, 6 months ago)
by
jgs
Original Path:
trunk/esys2/finley
erge of development branch dev-02 back to main trunk on 2005-08-12
Revision
146 -
Directory Listing
Modified
Fri Jul 29 01:44:29 2005 UTC
(15 years, 7 months ago)
by
jgs
Original Path:
trunk/esys2/finley
First merge of development branch dev-02 back to main trunk on 2005-07-29
Revision
141 -
Directory Listing
Modified
Mon Jul 25 05:15:41 2005 UTC
(15 years, 7 months ago)
by
jgs
Original Path:
trunk/esys2/finley
fixed to work with new python source/install directory structure
Revision
126 -
Directory Listing
Modified
Fri Jul 22 03:53:08 2005 UTC
(15 years, 7 months ago)
by
jgs
Original Path:
trunk/esys2/finley
Merge of development branch back to main trunk on 2005-07-22
Revision
123 -
Directory Listing
Modified
Fri Jul 8 04:08:13 2005 UTC
(15 years, 7 months ago)
by
jgs
Original Path:
trunk/esys2/finley
Merge of development branch back to main trunk on 2005-07-08
Revision
122 -
Directory Listing
Modified
Thu Jun 9 05:38:05 2005 UTC
(15 years, 8 months ago)
by
jgs
Original Path:
trunk/esys2/finley
Merge of development branch back to main trunk on 2005-06-09
Revision
121 -
Directory Listing
Modified
Fri May 6 04:26:16 2005 UTC
(15 years, 9 months ago)
by
jgs
Original Path:
trunk/esys2/finley
Merge of development branch back to main trunk on 2005-05-06
