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Revision 6692 - Directory Listing
Modified Mon Jun 25 02:31:06 2018 UTC (4 years ago) by jfenwick 
Fix
Revision 6691 - Directory Listing
Modified Mon Jun 25 02:28:12 2018 UTC (4 years ago) by jfenwick
Original Path: 5.2/speckley/src 
Prep for 5.2
Revision 6672 - Directory Listing
Modified Thu May 17 01:58:32 2018 UTC (4 years, 1 month ago) by uqagarro
Original Path: trunk/speckley/src 
Fixed some index swap bugs belonging to gradient calculus on Speckley.
Revision 6651 - Directory Listing
Modified Wed Feb 7 02:12:08 2018 UTC (4 years, 4 months ago) by jfenwick
Original Path: trunk/speckley/src 
Make everyone sad by touching all the files

Copyright dates update
Revision 6618 - Directory Listing
Modified Wed Aug 2 07:38:37 2017 UTC (4 years, 10 months ago) by jfenwick
Original Path: trunk/speckley/src 
Work on NetCDF4 inversion.

This does not work completely yet.
Revision 6578 - Directory Listing
Modified Wed May 17 04:16:40 2017 UTC (5 years, 1 month ago) by caltinay
Original Path: trunk/speckley/src 
Complex interpolation in speckley.
Revision 6577 - Directory Listing
Modified Wed May 17 02:34:45 2017 UTC (5 years, 1 month ago) by caltinay
Original Path: trunk/speckley/src 
complex integrals for speckley. Fixes #398
Revision 6523 - Directory Listing
Modified Tue Mar 7 06:50:34 2017 UTC (5 years, 3 months ago) by jfenwick
Original Path: trunk/speckley/src 
UPDATE THE COPYRIGHT DATES
Revision 6507 - Directory Listing
Modified Wed Mar 1 06:19:04 2017 UTC (5 years, 3 months ago) by jfenwick
Original Path: trunk/speckley/src 
More netcdf4 work

Still need to convert weipa
Revision 6434 - Directory Listing
Modified Sat Nov 5 12:16:07 2016 UTC (5 years, 7 months ago) by caltinay
Original Path: trunk/speckley/src 
Final pieces for #386: Complex gradients for Speckley 3D order 2-10. Removed workaround from escript.
Revision 6433 - Directory Listing
Modified Sat Nov 5 12:14:52 2016 UTC (5 years, 7 months ago) by caltinay
Original Path: trunk/speckley/src 
#386: speckley complex gradients for 2D orders 3-10
Revision 6432 - Directory Listing
Modified Sat Nov 5 11:55:44 2016 UTC (5 years, 7 months ago) by caltinay
Original Path: trunk/speckley/src 
#386 - complex gradient for speckley 2D.
Revision 6238 - Directory Listing
Modified Wed Jun 1 01:24:29 2016 UTC (6 years ago) by caltinay
Original Path: trunk/speckley/src 
fixing coverity-detected leaks CID 99614,99615
Revision 6175 - Directory Listing
Modified Fri Apr 15 06:59:14 2016 UTC (6 years, 2 months ago) by caltinay
Original Path: trunk/speckley/src 
make sure to copy python lists rather than adding on or PrependUnique is
useless.
Revision 6161 - Directory Listing
Modified Fri Apr 8 06:57:08 2016 UTC (6 years, 2 months ago) by caltinay
Original Path: trunk/speckley/src 
report filename in error message.
Revision 6145 - Directory Listing
Modified Wed Apr 6 06:28:57 2016 UTC (6 years, 2 months ago) by caltinay
Original Path: trunk/speckley/src 
now refraining from adding all libraries to all targets. So we don't link
unnecessary libraries, e.g. escript does not need parmetis etc...
Revision 6144 - Directory Listing
Modified Wed Apr 6 05:25:13 2016 UTC (6 years, 2 months ago) by caltinay
Original Path: trunk/speckley/src 
last round of namespacing defines.
Revision 6141 - Directory Listing
Modified Wed Apr 6 03:51:30 2016 UTC (6 years, 2 months ago) by caltinay
Original Path: trunk/speckley/src 
more namespacing of defines.
Revision 6124 - Directory Listing
Modified Tue Apr 5 03:23:12 2016 UTC (6 years, 2 months ago) by caltinay
Original Path: trunk/speckley/src 
Fixing python module build on OS X. Added PythonModule builder so we do this generically now.
Revision 6119 - Directory Listing
Modified Sun Apr 3 23:36:59 2016 UTC (6 years, 2 months ago) by caltinay
Original Path: trunk/speckley/src 
merging trilinos branch to trunk.
We can now build with trilinos and use it instead of paso for single PDEs.
There are some more things to be done...
Revision 6112 - Directory Listing
Modified Thu Mar 31 09:40:10 2016 UTC (6 years, 2 months ago) by jfenwick
Original Path: trunk/speckley/src 
Relicense all the things!
Revision 6076 - Directory Listing
Modified Fri Mar 18 12:06:46 2016 UTC (6 years, 3 months ago) by jfenwick
Original Path: trunk/speckley/src 
Fixing some namespaces and includes
Revision 6067 - Directory Listing
Modified Wed Mar 16 02:47:38 2016 UTC (6 years, 3 months ago) by caltinay
Original Path: trunk/speckley/src 
Back to having a single ESYS_ASSERT macro BUT when built with MPI we
are now merely printing the error message and calling MPI_Abort on COMM_WORLD.
My understanding is that this should work on subworlds as well as all
processes are part of COMM_WORLD...

Addresses #362
Revision 6060 - Directory Listing
Modified Fri Mar 11 02:51:26 2016 UTC (6 years, 3 months ago) by caltinay
Original Path: trunk/speckley/src 
added an MPI-aware version of ESYS_ASSERT and replaced suitable places.
This will not fix the current buildbot hang as that is within a block
where we don't have a JMPI intance.
Revision 6001 - Directory Listing
Modified Tue Mar 1 05:01:49 2016 UTC (6 years, 3 months ago) by caltinay
Original Path: trunk/speckley/src 
Bye bye esysUtils.
Also removed first.h as escript/DataTypes.h is now required everywhere
and fulfills that role by including a boost python header first.
Revision 5998 - Directory Listing
Modified Mon Feb 29 08:57:28 2016 UTC (6 years, 3 months ago) by caltinay
Original Path: trunk/speckley/src 
removed some macros and moved index.h to escript.
Revision 5997 - Directory Listing
Modified Mon Feb 29 07:24:47 2016 UTC (6 years, 3 months ago) by caltinay
Original Path: trunk/speckley/src 
moved esys MPI to escript.
Revision 5985 - Directory Listing
Modified Fri Feb 26 02:21:44 2016 UTC (6 years, 3 months ago) by jfenwick
Original Path: trunk/speckley/src 
Adding #define for namespace on dynamic_pointer_cast<>

Also for static_pointer_cast<>
The plan is to make it easy to switch between boost::
and std::  for shared_ptr

This will be important if we start to rely on more recent
share_ptr features (guaranteed to be in c++11 not necessarily in boost)
Revision 5972 - Directory Listing
Modified Wed Feb 24 04:05:30 2016 UTC (6 years, 4 months ago) by caltinay
Original Path: trunk/speckley/src 
Major rework of our exceptions. We now have specific
AssertException
NotImplementedError
ValueError
which translate to the corresponding python exception type.
I have gone through a few places and replaced things but not everywhere.
Revision 5968 - Directory Listing
Modified Tue Feb 23 06:08:37 2016 UTC (6 years, 4 months ago) by caltinay
Original Path: trunk/speckley/src 
moved file writer to escript and added explicit link to escript in paso.
Revision 5967 - Directory Listing
Modified Tue Feb 23 05:46:09 2016 UTC (6 years, 4 months ago) by caltinay
Original Path: trunk/speckley/src 
found a few instances of MPI_COMM_WORLD and squashed them.
Added member to AbstractDomain that returns a JMPI so we ensure all
domains support that.
Moved appendRankToFilename into class.
Revision 5965 - Directory Listing
Modified Tue Feb 23 01:45:40 2016 UTC (6 years, 4 months ago) by caltinay
Original Path: trunk/speckley/src 
removed more useless #defines.
Revision 5958 - Directory Listing
Modified Mon Feb 22 01:05:32 2016 UTC (6 years, 4 months ago) by caltinay
Original Path: trunk/speckley/src 
moved random to escript.
Revision 5954 - Directory Listing
Modified Sun Feb 21 22:40:27 2016 UTC (6 years, 4 months ago) by caltinay
Original Path: trunk/speckley/src 
moved exception translators to escript.
Revision 5948 - Directory Listing
Modified Fri Feb 19 05:02:39 2016 UTC (6 years, 4 months ago) by caltinay
Original Path: trunk/speckley/src 
moved index_t & dim_t into escript::DataTypes and updated files
accordingly. Dudley needs a full sweep of namespacing at some not-distant
future.
Revision 5863 - Directory Listing
Modified Wed Jan 13 02:25:48 2016 UTC (6 years, 5 months ago) by jfenwick
Original Path: trunk/speckley/src 
Copyright dates updated.
\version for doxygen to read
Revision 5775 - Directory Listing
Modified Thu Jul 30 08:01:06 2015 UTC (6 years, 10 months ago) by sshaw
Original Path: trunk/speckley/src 
pushing release to trunk
Revision 5736 - Directory Listing
Modified Fri Jul 10 00:34:03 2015 UTC (6 years, 11 months ago) by sshaw
Original Path: trunk/speckley/src 
made namespace use consistent between header and cpp to help poor doxygen find the right functions
Revision 5731 - Directory Listing
Modified Thu Jul 9 02:27:37 2015 UTC (6 years, 11 months ago) by jfenwick
Original Path: trunk/speckley/src 
An attempt to provide some prior warning about situations described in issue#309.
If -DEXWRITECHK is defined, any attempt to get RW access to a data object
without requireWrite() will throw an exception.

This does not ultimately address the issue of dirac but will hopefully
catch problems.
Revision 5593 - Directory Listing
Modified Fri Apr 24 01:36:26 2015 UTC (7 years, 2 months ago) by jfenwick
Original Path: trunk/speckley/src 
Fixing institution name to comply with policy
Revision 5586 - Directory Listing
Modified Tue Apr 14 03:27:59 2015 UTC (7 years, 2 months ago) by sshaw
Original Path: trunk/speckley/src 
making speckley gradients faster
Revision 5585 - Directory Listing
Modified Fri Apr 10 06:00:39 2015 UTC (7 years, 2 months ago) by sshaw
Original Path: trunk/speckley/src 
MPI optimisations for speckley Brick corners and edges
Revision 5584 - Directory Listing
Modified Fri Apr 10 04:31:52 2015 UTC (7 years, 2 months ago) by sshaw
Original Path: trunk/speckley/src 
improved speckley Rectangle MPI use
Revision 5583 - Directory Listing
Modified Fri Apr 10 04:28:07 2015 UTC (7 years, 2 months ago) by sshaw
Original Path: trunk/speckley/src 
better MPI utilisation when sharing speckley Brick's faces
Revision 5579 - Directory Listing
Modified Tue Apr 7 01:19:53 2015 UTC (7 years, 2 months ago) by sshaw
Original Path: trunk/speckley/src 
fixing lazy breakages with speckley waves
Revision 5575 - Directory Listing
Modified Wed Apr 1 03:17:22 2015 UTC (7 years, 2 months ago) by sshaw
Original Path: trunk/speckley/src 
sphinx now builds python doco including module-level docstrings and class __init__ docstrings, also cleared up some doco errors and added multires documentation
Revision 5574 - Directory Listing
Modified Mon Mar 30 03:14:06 2015 UTC (7 years, 2 months ago) by sshaw
Original Path: trunk/speckley/src 
adding speckley wave assemblers and associated tests
Revision 5535 - Directory Listing
Modified Thu Mar 12 23:05:26 2015 UTC (7 years, 3 months ago) by jfenwick
Original Path: trunk/speckley/src 
Switch to boost::math::isnan
Revision 5529 - Directory Listing
Modified Wed Mar 11 04:03:12 2015 UTC (7 years, 3 months ago) by sshaw
Original Path: trunk/speckley/src 
finishing std namespace changes to speckley and ripley so they compile again
Revision 5525 - Directory Listing
Modified Wed Mar 11 01:17:16 2015 UTC (7 years, 3 months ago) by jfenwick
Original Path: trunk/speckley/src 
Getting isnan from boost::math which should help address issue 283
Removing top level using of std
Revision 5481 - Directory Listing
Modified Wed Feb 18 05:07:25 2015 UTC (7 years, 4 months ago) by sshaw
Original Path: trunk/speckley/src 
fixing a memory leak in the new MPI wrapper, along with some comment updating to satisfy doxygen a bit better
Revision 5480 - Directory Listing
Modified Wed Feb 18 04:35:50 2015 UTC (7 years, 4 months ago) by jfenwick
Original Path: trunk/speckley/src 
Stage 1 of removing escriptDataC
Revision 5478 - Directory Listing
Modified Wed Feb 18 01:57:49 2015 UTC (7 years, 4 months ago) by sshaw
Original Path: trunk/speckley/src 
introducing shiny new reduced function spaces to speckley
Revision 5469 - Directory Listing
Modified Mon Feb 16 04:03:24 2015 UTC (7 years, 4 months ago) by jfenwick
Original Path: trunk/speckley/src 
fixes I forgot to commit
Revision 5467 - Directory Listing
Modified Mon Feb 16 00:24:20 2015 UTC (7 years, 4 months ago) by jfenwick
Original Path: trunk/speckley/src 
Removing DBADPYTHONMACRO workarounds
Revision 5464 - Directory Listing
Modified Sat Feb 14 00:25:03 2015 UTC (7 years, 4 months ago) by jfenwick
Original Path: trunk/speckley/src 
Fix for python compile warnings
Revision 5448 - Directory Listing
Modified Fri Feb 6 05:31:37 2015 UTC (7 years, 4 months ago) by jfenwick
Original Path: trunk/speckley/src 
Updating all the dates
Revision 5373 - Directory Listing
Modified Mon Dec 15 06:09:58 2014 UTC (7 years, 6 months ago) by caltinay
Original Path: trunk/speckley/src 
Fixing OMP build with icc13 on raijin.
Revision 5317 - Directory Listing
Modified Tue Dec 9 00:36:08 2014 UTC (7 years, 6 months ago) by sshaw
Original Path: trunk/speckley/src 
speckley and ripley can now interpolate from DiracDeltaFunctions to ContinuousFunction
Revision 5303 - Directory Listing
Modified Thu Dec 4 06:17:11 2014 UTC (7 years, 6 months ago) by jfenwick
Original Path: trunk/speckley/src 
Changes to keep clang happy
Revision 5268 - Directory Listing
Modified Mon Nov 17 07:10:40 2014 UTC (7 years, 7 months ago) by sshaw
Original Path: trunk/speckley/src 
completed speckley->ripley interpolation across multi-axial subdivisions
Revision 5261 - Directory Listing
Modified Thu Nov 13 04:40:28 2014 UTC (7 years, 7 months ago) by jfenwick
Original Path: trunk/speckley/src 
uint ->unsigned int;  using namespace std in speckly Rectangle to allow isnan to work.
Revision 5258 - Directory Listing
Modified Tue Nov 11 04:29:54 2014 UTC (7 years, 7 months ago) by sshaw
Original Path: trunk/speckley/src 
replacing a sleep with an MPIbarrier because it's much, much faster in block testing
Revision 5255 - Directory Listing
Modified Tue Nov 11 01:55:44 2014 UTC (7 years, 7 months ago) by sshaw
Original Path: trunk/speckley/src 
adding support for biaxial MPI subdivision for speckly->ripley coupler
Revision 5247 - Directory Listing
Modified Fri Nov 7 02:44:08 2014 UTC (7 years, 7 months ago) by sshaw
Original Path: trunk/speckley/src 
fixing non-MPI builds with couplers
Revision 5246 - Directory Listing
Modified Fri Nov 7 01:41:18 2014 UTC (7 years, 7 months ago) by sshaw
Original Path: trunk/speckley/src 
adding speckley->ripley MPI Brick coupling for single axis subdivisions
Revision 5227 - Directory Listing
Modified Mon Oct 27 06:09:03 2014 UTC (7 years, 7 months ago) by sshaw
Original Path: trunk/speckley/src 
adding forgotten files
Revision 5226 - Directory Listing
Modified Mon Oct 27 05:04:07 2014 UTC (7 years, 7 months ago) by sshaw
Original Path: trunk/speckley/src 
extending speckley->ripley interpolation to support MPI
Revision 5201 - Directory Listing
Modified Fri Oct 10 06:23:03 2014 UTC (7 years, 8 months ago) by sshaw
Original Path: trunk/speckley/src 
fixing errors in speckley bricks node referencing in multidimensional subdivisions, fixes recent VTK failures
Revision 5196 - Directory Listing
Modified Tue Oct 7 02:00:59 2014 UTC (7 years, 8 months ago) by caltinay
Original Path: trunk/speckley/src 
more type changes/fixes.
Revision 5195 - Directory Listing
Modified Fri Oct 3 02:12:56 2014 UTC (7 years, 8 months ago) by sshaw
Original Path: trunk/speckley/src 
speckley: more informative functionspace errors for coupled interpolation, removed points from tagsinuse to match ripley
Revision 5194 - Directory Listing
Modified Thu Oct 2 06:36:02 2014 UTC (7 years, 8 months ago) by caltinay
Original Path: trunk/speckley/src 
Some more long-index work.
Revision 5192 - Directory Listing
Modified Thu Oct 2 04:42:23 2014 UTC (7 years, 8 months ago) by sshaw
Original Path: trunk/speckley/src 
adding omitted copyright header
Revision 5191 - Directory Listing
Modified Thu Oct 2 04:40:20 2014 UTC (7 years, 8 months ago) by sshaw
Original Path: trunk/speckley/src 
adding speckley to ripley interpolation (single process only)
Revision 5190 - Directory Listing
Modified Thu Oct 2 01:15:32 2014 UTC (7 years, 8 months ago) by sshaw
Original Path: trunk/speckley/src 
removing accidentally included and incomplete cross domain work
Revision 5189 - Directory Listing
Modified Thu Oct 2 01:12:57 2014 UTC (7 years, 8 months ago) by sshaw
Original Path: trunk/speckley/src 
fixing badly behaved dirac points in speckley
Revision 5177 - Directory Listing
Modified Thu Sep 25 04:37:54 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
more speckley type cleanup (and unused function cleanup)
Revision 5175 - Directory Listing
Modified Thu Sep 25 03:58:06 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
some speckley type corrections
Revision 5173 - Directory Listing
Modified Thu Sep 25 01:04:26 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
fixing a sillyness in speckley dirac point assignment
Revision 5170 - Directory Listing
Modified Wed Sep 24 00:30:39 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
fixing bug in multi-process speckley with dirac points, some test cleanup
Revision 5158 - Directory Listing
Modified Wed Sep 17 04:33:42 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
removed vestigal FunctionOnBoundary and reduced functionspaces from speckley
Revision 5157 - Directory Listing
Modified Wed Sep 17 01:02:58 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
fixing non-MPI builds of speckley
Revision 5155 - Directory Listing
Modified Tue Sep 16 04:21:15 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
stripping out some leftover commented debug from previous commit
Revision 5154 - Directory Listing
Modified Tue Sep 16 04:19:03 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
updating speckley binary grid reads to interpolate all missing quad points
Revision 5150 - Directory Listing
Modified Mon Sep 15 06:09:42 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
type corrections to speckley and adding in binarygrid support for brick (element corners only)
Revision 5149 - Directory Listing
Modified Mon Sep 15 01:57:06 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
removed transport from speckley, added read/write binary grids for rectangles
Revision 5145 - Directory Listing
Modified Thu Sep 11 03:28:37 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
fixed corner issue in three-dimensional speckley subdivisions
Revision 5143 - Directory Listing
Modified Wed Sep 10 07:27:59 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
removing some of those omp loop sections until they play well
Revision 5142 - Directory Listing
Modified Wed Sep 10 07:18:34 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
marked loops as omp, wrapped remaining MPI-only function call
Revision 5139 - Directory Listing
Modified Wed Sep 10 05:42:46 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
speckley brick now supports MPI
Revision 5133 - Directory Listing
Modified Fri Sep 5 00:07:34 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
fixed non-MPI builds with speckley
Revision 5132 - Directory Listing
Modified Thu Sep 4 07:02:24 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
added MPI support and tests to speckley, cleaned out more ghostzone code
Revision 5129 - Directory Listing
Modified Fri Aug 29 05:10:48 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
fixing missed MPI type merge from ripley
Revision 5128 - Directory Listing
Modified Fri Aug 29 00:52:35 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
fixing a bad index calculation
Revision 5127 - Directory Listing
Modified Fri Aug 29 00:30:34 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
more redundant includes removed
Revision 5126 - Directory Listing
Modified Thu Aug 28 23:32:59 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
fixing last remnants of speckley::SystemMatrix
Revision 5125 - Directory Listing
Modified Thu Aug 28 23:16:21 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
removing troublesome future-predicting #include
Revision 5123 - Directory Listing
Added Thu Aug 28 07:02:11 2014 UTC (7 years, 9 months ago) by sshaw
Original Path: trunk/speckley/src 
Adding speckley (high-order) domain family, doesn't yet support MPI, Reduced functionspaces, or PDEs using A, B and/or C
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