Log of /release/pre3.3.1
Directory Listing
Revision
4171 -
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Modified
Fri Jan 25 07:34:53 2013 UTC
(9 years, 4 months ago)
by
jfenwick
Copied from:
trunk revision 4170
Lets try that again
Revision
4168 -
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Modified
Fri Jan 25 07:31:47 2013 UTC
(9 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Release title and dep fix
Revision
4167 -
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Modified
Fri Jan 25 05:21:30 2013 UTC
(9 years, 4 months ago)
by
jfenwick
Original Path:
trunk
fixes for doco for earlier releases
Revision
4166 -
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Modified
Fri Jan 25 04:18:45 2013 UTC
(9 years, 4 months ago)
by
azadeh
Original Path:
trunk
gravity
Revision
4165 -
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Modified
Fri Jan 25 01:07:57 2013 UTC
(9 years, 4 months ago)
by
azadeh
Original Path:
trunk
joint
Revision
4164 -
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Modified
Thu Jan 24 05:34:13 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
netcdf data source description.
Revision
4163 -
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Modified
Thu Jan 24 05:03:48 2013 UTC
(9 years, 4 months ago)
by
azadeh
Original Path:
trunk
changing
Revision
4162 -
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Modified
Thu Jan 24 03:53:19 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Added missing example file to display netcdf data.
Revision
4161 -
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Modified
Thu Jan 24 03:22:38 2013 UTC
(9 years, 4 months ago)
by
azadeh
Original Path:
trunk
modifying
Revision
4160 -
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Modified
Thu Jan 24 00:13:32 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Moved figures to subdir and added more DataSource doco.
Revision
4159 -
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Modified
Thu Jan 24 00:05:28 2013 UTC
(9 years, 4 months ago)
by
azadeh
Original Path:
trunk
dding magnetic images
Revision
4158 -
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Modified
Wed Jan 23 07:02:21 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Write output even when max iterations reached.
Revision
4157 -
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Modified
Wed Jan 23 03:52:07 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
added magnetic netcdf example (no data yet).
Revision
4156 -
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Modified
Wed Jan 23 03:45:14 2013 UTC
(9 years, 4 months ago)
by
azadeh
Original Path:
trunk
changes in document
Revision
4155 -
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Modified
Wed Jan 23 00:05:03 2013 UTC
(9 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Removed some incorrect ACcESS copyright attributions [2010 or later] since ACcESS did not exist at that point. Also added 2013 to a couple of files which I missed.
Revision
4154 -
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Modified
Tue Jan 22 09:30:23 2013 UTC
(9 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Round 1 of copyright fixes
Revision
4153 -
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Modified
Tue Jan 22 01:57:50 2013 UTC
(9 years, 4 months ago)
by
gross
Original Path:
trunk
no driver example added. Doe not work yet.
Revision
4152 -
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Modified
Tue Jan 22 00:29:03 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Moved figures to subdirectory.
Revision
4151 -
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Modified
Tue Jan 22 00:23:39 2013 UTC
(9 years, 4 months ago)
by
azadeh
Original Path:
trunk
update joint and magnetic cookbook.
Revision
4150 -
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Modified
Mon Jan 21 04:14:24 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Raise an exception if some methods are called after domain creation.
Revision
4149 -
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Modified
Mon Jan 21 02:03:31 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Checkpoint - DomainBuilder documented.
Revision
4148 -
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Modified
Mon Jan 21 01:04:20 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Updated netcdf gravity inversion example.
Revision
4147 -
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Modified
Fri Jan 18 03:35:15 2013 UTC
(9 years, 4 months ago)
by
gross
Original Path:
trunk
added some words in the overview and clean-up of bib.
Revision
4146 -
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Modified
Fri Jan 18 01:36:49 2013 UTC
(9 years, 4 months ago)
by
gross
Original Path:
trunk
some remarks on the class dependency added.
Revision
4145 -
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Modified
Fri Jan 18 00:51:49 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Checkpoint.
Revision
4144 -
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Modified
Fri Jan 18 00:34:21 2013 UTC
(9 years, 4 months ago)
by
gross
Original Path:
trunk
new diagrams
Revision
4143 -
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Modified
Thu Jan 17 08:48:47 2013 UTC
(9 years, 4 months ago)
by
gross
Original Path:
trunk
documentation of minimizer update plus clarification of notations on the code
Revision
4142 -
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Modified
Tue Jan 15 09:06:06 2013 UTC
(9 years, 4 months ago)
by
gross
Original Path:
trunk
documentation of inversion cost function added
Revision
4141 -
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Modified
Tue Jan 15 04:11:12 2013 UTC
(9 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Fixed to scripts to allow doco to build in pbuilder.
Looking for libraries in the place they were built is a good I've found.
Revision
4140 -
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Modified
Tue Jan 15 02:34:41 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Updated example inversion files.
Revision
4139 -
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Modified
Tue Jan 15 00:13:28 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Added L-BFGS reference and some minor changes.
Revision
4138 -
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Modified
Mon Jan 14 23:57:00 2013 UTC
(9 years, 4 months ago)
by
gross
Original Path:
trunk
some rearrangement of part II
Revision
4137 -
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Modified
Mon Jan 14 22:59:13 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Disabled another test.
Revision
4136 -
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Modified
Mon Jan 14 05:20:34 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
clarifications about cartesian domain
Revision
4135 -
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Modified
Mon Jan 14 04:54:14 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Fixed test file.
Revision
4134 -
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Modified
Sun Jan 13 23:24:35 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Removed failing test.
Revision
4133 -
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Modified
Fri Jan 11 06:41:10 2013 UTC
(9 years, 4 months ago)
by
gross
Original Path:
trunk
some documentation on Inversion Cost function added.
Revision
4132 -
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Modified
Fri Jan 11 05:46:49 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Range of epydoc fixes.
Revision
4131 -
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Modified
Fri Jan 11 03:54:16 2013 UTC
(9 years, 4 months ago)
by
gross
Original Path:
trunk
documentaion of inversion driver API added.
Revision
4130 -
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Modified
Thu Jan 10 03:38:17 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Do not end document after chapter :-)
Revision
4129 -
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Modified
Thu Jan 10 03:30:45 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Fixed small typo
Revision
4128 -
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Modified
Thu Jan 10 02:04:08 2013 UTC
(9 years, 4 months ago)
by
caltinay
Original Path:
trunk
Use fixed low number of iterations for the callback test.
Revision
4127 -
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Modified
Thu Jan 10 00:46:56 2013 UTC
(9 years, 4 months ago)
by
azadeh
Original Path:
trunk
add documentation for gravity.
Revision
4126 -
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Modified
Tue Jan 8 02:37:48 2013 UTC
(9 years, 4 months ago)
by
gross
Original Path:
trunk
some work on the level set class. no testing yet.
Revision
4125 -
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Modified
Wed Jan 2 06:15:00 2013 UTC
(9 years, 4 months ago)
by
gross
Original Path:
trunk
some fixes in the inversion set-up
Revision
4124 -
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Modified
Fri Dec 21 01:35:43 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
joint inversion added
Revision
4123 -
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Modified
Thu Dec 20 23:47:55 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
small fix
Revision
4122 -
Directory Listing
Modified
Thu Dec 20 05:42:35 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
More work towards joint inversion. There is now one class for inversion cost function which can handle all relevant cases
for a single model inversion, cross gradient case and functional dependence of physical parameters.
Revision
4121 -
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Modified
Wed Dec 19 00:24:50 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
changes to the boundary conditions.
Revision
4120 -
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Modified
Tue Dec 18 04:49:37 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
some improvements to the robutness of the minimizer:
a break down in the orthogonalization is hnadles via a restart.
a restart can now be set manually
the iteration throughs now an exception in case of failure.
It is also possible to set the density anomaly to zero for regions below a certain depth.
Revision
4119 -
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Modified
Mon Dec 17 04:53:15 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
some adjustments to the documentation
Revision
4118 -
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Modified
Mon Dec 17 00:50:47 2012 UTC
(9 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Some tweaks for auto building - need more though
Revision
4117 -
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Modified
Fri Dec 14 07:29:35 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
some adjustments with names
Revision
4116 -
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Modified
Fri Dec 14 07:21:14 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
tests for oscillatory data added.
Revision
4115 -
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Modified
Fri Dec 14 04:48:48 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
terminolgy for magnetic flux density clarified. clean up on synthetic data
Revision
4114 -
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Modified
Fri Dec 14 04:24:46 2012 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk
Time to remove deprecated saveVTK/DX methods from Data and Domain.
Revision
4113 -
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Modified
Fri Dec 14 01:54:53 2012 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk
shake29 options file.
Revision
4112 -
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Modified
Fri Dec 14 01:51:30 2012 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk
Added simple gravity inversion example to be included in cookbook.
Revision
4111 -
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Modified
Fri Dec 14 01:46:13 2012 UTC
(9 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Fixed the genrst script to be executable
Revision
4110 -
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Modified
Fri Dec 14 01:21:33 2012 UTC
(9 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Fixed to use whatever python is leading the path.
Disabled epydoc
Revision
4109 -
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Modified
Fri Dec 14 01:08:52 2012 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk
Fixed tests.
Revision
4108 -
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Modified
Thu Dec 13 06:38:11 2012 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk
Changed methods to add padding areas.
Revision
4107 -
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Modified
Thu Dec 13 05:54:03 2012 UTC
(9 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Now building doc using sphinx. Doc builds will fail until I get stuff installed on savanna
Revision
4106 -
Directory Listing
Modified
Thu Dec 13 05:08:44 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
some clarification on how to handle back ground magnetic field plus renaming of SyntheticData
Revision
4105 -
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Modified
Thu Dec 13 04:11:59 2012 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk
Updated test to reflect interface changes.
Revision
4104 -
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Modified
Thu Dec 13 03:30:23 2012 UTC
(9 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Ensuring we are using new-style classes
This may not be strictly necessary since our code does not depend on the difference.
Revision
4103 -
Directory Listing
Modified
Wed Dec 12 07:03:02 2012 UTC
(9 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Got rid of some unwanted sidebar elts. Correctly detect standalone functions exposed by boost
Revision
4102 -
Directory Listing
Modified
Wed Dec 12 06:17:03 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
more improvements on rescaling of weights. We now try to balance the gradients rather than the values.
Revision
4101 -
Directory Listing
Modified
Wed Dec 12 04:22:58 2012 UTC
(9 years, 5 months ago)
by
jfenwick
Original Path:
trunk
First attempt at a sphinx generated API docs
In the project root:
mkdir doctest
python doc/sphinx_api/genrst.py
cd doctest
make html
should do
Revision
4100 -
Directory Listing
Modified
Tue Dec 11 06:55:20 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
minimizer uses now a relative change to solution to terminate iteration. Gravity still has problems
Revision
4099 -
Directory Listing
Modified
Tue Dec 11 04:04:47 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
Clarification of terminology and scaling.
Joint inversion is not working yet.
Revision
4098 -
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Modified
Fri Dec 7 03:45:20 2012 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk
Unbroke my breakage.
Revision
4097 -
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Modified
Fri Dec 7 01:18:35 2012 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk
Minor edits.
Revision
4096 -
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Modified
Thu Dec 6 04:05:29 2012 UTC
(9 years, 5 months ago)
by
jfenwick
Original Path:
trunk
temporary doc fixes and moving tsunami out of the way
Revision
4095 -
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Modified
Wed Dec 5 05:32:22 2012 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk
A bit of doco cleanup.
Revision
4094 -
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Modified
Mon Dec 3 23:28:38 2012 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk
Fixed typo.
Revision
4093 -
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Modified
Fri Nov 30 04:52:01 2012 UTC
(9 years, 5 months ago)
by
gross
Original Path:
trunk
There is now a coherent implementation of gravity and magnetic forward model including an update of the user's guide.
Revision
4092 -
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Modified
Thu Nov 29 10:42:39 2012 UTC
(9 years, 5 months ago)
by
caltinay
Original Path:
trunk
Minor change. Test commit.
Revision
4091 -
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Modified
Mon Nov 26 10:27:29 2012 UTC
(9 years, 6 months ago)
by
gross
Original Path:
trunk
Some terminology introduced and magnetic inversion corrected.
Revision
4090 -
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Modified
Mon Nov 26 03:51:04 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Savanna tweaks.
Revision
4089 -
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Modified
Fri Nov 23 04:41:54 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Switch to new toolchain on Savanna.
Revision
4088 -
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Modified
Thu Nov 22 23:31:37 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Use kronecker, not numpy's identity in wave (why do these issues come up now?)
Revision
4087 -
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Modified
Thu Nov 22 22:28:01 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Moved matplotlib imports in test scripts before escript since there is an
import chain which pulls it so the use() function has no effect.
Revision
4086 -
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Modified
Wed Nov 21 02:48:12 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Doco for 1D interpolation [resolves #631]
Revision
4085 -
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Modified
Tue Nov 20 07:04:11 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
nonuniformInterolate and Slope added.
Doco later
Revision
4084 -
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Modified
Tue Nov 20 06:22:07 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Adding some linebreaks
Revision
4083 -
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Modified
Mon Nov 19 22:19:42 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
removed manually set weights from scripts.
Revision
4082 -
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Modified
Mon Nov 19 06:16:06 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Minor changes to install doco
Revision
4081 -
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Modified
Mon Nov 19 02:35:18 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Updated unit test to test LinearMapping instead of old ScalingMapping
Revision
4080 -
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Modified
Mon Nov 19 01:45:38 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Epydoc fixes
Revision
4079 -
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Modified
Fri Nov 16 07:59:01 2012 UTC
(9 years, 6 months ago)
by
gross
Original Path:
trunk
some modifications to scaling in downunder. still not perfect.
Revision
4078 -
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Modified
Fri Nov 16 07:50:49 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Unit tests for binary install with no scons and no source tree.
Script for installing and testing a .deb within a chroot.
Revision
4077 -
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Modified
Fri Nov 16 04:31:02 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Minor change.
Revision
4076 -
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Modified
Thu Nov 15 03:45:24 2012 UTC
(9 years, 6 months ago)
by
gross
Original Path:
trunk
def getDirectionalDerivative(self, m, d, grad_m):
Revision
4075 -
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Modified
Thu Nov 15 03:31:37 2012 UTC
(9 years, 6 months ago)
by
gross
Original Path:
trunk
missing latex files
Revision
4074 -
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Modified
Thu Nov 15 03:30:59 2012 UTC
(9 years, 6 months ago)
by
gross
Original Path:
trunk
this will break the downundermodule: major revision of the classes.
Revision
4073 -
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Modified
Thu Nov 15 03:28:33 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixing doco build error
Revision
4072 -
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Modified
Thu Nov 15 01:58:35 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fix to prevent escript from segfaulting on quantal
Revision
4071 -
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Modified
Tue Nov 13 21:43:11 2012 UTC
(9 years, 6 months ago)
by
gross
Original Path:
trunk
small fix
Revision
4070 -
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Modified
Tue Nov 13 07:55:22 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
File for quantal. Now to work out why on earth quantal manages to make epydoc segfault
Revision
4069 -
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Modified
Tue Nov 13 07:47:16 2012 UTC
(9 years, 6 months ago)
by
gross
Original Path:
trunk
ArithmeticTuple supports empty data object as components now.
Revision
4068 -
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Modified
Tue Nov 13 04:42:08 2012 UTC
(9 years, 6 months ago)
by
vboros
Original Path:
trunk
Small corrections to the magnetic forward model
Revision
4067 -
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Modified
Mon Nov 12 07:35:14 2012 UTC
(9 years, 6 months ago)
by
vboros
Original Path:
trunk
Magnetostatics background added
Revision
4066 -
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Modified
Mon Nov 12 06:18:47 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
renaming wheezyoptions file
Revision
4065 -
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Modified
Mon Nov 12 04:47:32 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Trying without uml
Revision
4064 -
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Modified
Fri Nov 9 07:25:14 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Tweaks
Revision
4063 -
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Modified
Fri Nov 9 06:15:00 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed a typo in method description.
Revision
4062 -
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Modified
Fri Nov 9 04:53:08 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Start of module reference section in inversion guide.
Revision
4061 -
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Modified
Fri Nov 9 04:05:28 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Updated data source test cases.
Revision
4060 -
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Modified
Fri Nov 9 03:50:19 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
-Overhaul of inversion data sources. Domain is now generated and managed by separate class.
-Removed UBCDataSource which was only used for testing.
-Updated example scripts.
Revision
4059 -
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Modified
Fri Nov 9 03:20:23 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Start of substitution for rules
Revision
4058 -
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Modified
Fri Nov 2 06:47:06 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
-Ripley now checks for input fs when calling gradient
-interactive mode works again when filename is supplied (typo)
-forward model PDE sets symmetry on now
Revision
4057 -
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Modified
Fri Nov 2 04:15:09 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
toc/hyperref fixes for inversion pdf.
Revision
4056 -
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Modified
Thu Nov 1 07:20:38 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Allow doxygen to build in another target
Debian build stuff begins
Revision
4055 -
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Modified
Thu Nov 1 00:22:01 2012 UTC
(9 years, 6 months ago)
by
gross
Original Path:
trunk
Renaming of filenames
Revision
4054 -
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Modified
Wed Oct 31 23:27:57 2012 UTC
(9 years, 6 months ago)
by
gross
Original Path:
trunk
prilimary checkin
Revision
4053 -
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Modified
Wed Oct 31 07:27:35 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Do not fix potential on sides of domain by default.
Revision
4052 -
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Modified
Wed Oct 31 05:50:35 2012 UTC
(9 years, 6 months ago)
by
gross
Original Path:
trunk
missing references added (mantis id=683)
Revision
4051 -
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Modified
Wed Oct 31 03:40:47 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Split inversion cookbook into two parts...
Revision
4050 -
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Modified
Wed Oct 31 01:01:24 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Changed initial Hessian in magnetic test and removed some debug output.
Revision
4049 -
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Modified
Wed Oct 31 00:50:50 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed typos.
Revision
4048 -
Directory Listing
Modified
Tue Oct 30 21:54:15 2012 UTC
(9 years, 6 months ago)
by
gross
Original Path:
trunk
fixed modification in the DataSource creator
Revision
4047 -
Directory Listing
Modified
Tue Oct 30 09:10:07 2012 UTC
(9 years, 6 months ago)
by
gross
Original Path:
trunk
More on magnetic inversion
Revision
4046 -
Directory Listing
Modified
Tue Oct 30 04:43:25 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Deprecated saveDX and made sure DeprecationWarnings are shown (py2.7 disabled
those). Also a fix to $BUILD_DIR being non-absolute.
Revision
4045 -
Directory Listing
Modified
Tue Oct 30 03:57:22 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Imported inversion cookbook.
Revision
4044 -
Directory Listing
Modified
Tue Oct 30 03:35:17 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Some doco fixes for downunder.
Revision
4043 -
Directory Listing
Modified
Tue Oct 30 03:34:43 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Compile fixes for install guide.
Revision
4042 -
Directory Listing
Modified
Mon Oct 29 05:55:58 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
New SaveSilo tests (only run if Silo module available and MPI size=1).
Tests are somewhat limited due to missing functionality in Silo module (devs
contacted about that).
Revision
4041 -
Directory Listing
Modified
Sun Oct 28 23:42:35 2012 UTC
(9 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed a typo
Revision
4040 -
Directory Listing
Modified
Sun Oct 28 22:37:45 2012 UTC
(9 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Some py3 changes that didn't get committed for some reason
Revision
4039 -
Directory Listing
Modified
Fri Oct 26 07:34:06 2012 UTC
(9 years, 7 months ago)
by
gross
Original Path:
trunk
magnetic inversion added
Revision
4038 -
Directory Listing
Modified
Fri Oct 26 04:47:25 2012 UTC
(9 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Minor fix to control file
Revision
4037 -
Directory Listing
Modified
Fri Oct 26 03:04:30 2012 UTC
(9 years, 7 months ago)
by
gross
Original Path:
trunk
some modifictaions to make implementation for magnetic inversion easier
Revision
4036 -
Directory Listing
Modified
Thu Oct 25 06:21:03 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Added saveVTK tests for ripley domains.
Revision
4035 -
Directory Listing
Modified
Thu Oct 25 03:10:14 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Tweaked scons files so tests work even when specifying non-absolute build_dir.
Revision
4034 -
Directory Listing
Modified
Thu Oct 25 02:54:01 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Fixes to inversion. Using resetRightHandSideCoefficients() now.
Revision
4033 -
Directory Listing
Modified
Wed Oct 24 08:14:41 2012 UTC
(9 years, 7 months ago)
by
gross
Original Path:
trunk
some typos fixed.
Revision
4032 -
Directory Listing
Modified
Wed Oct 24 08:06:15 2012 UTC
(9 years, 7 months ago)
by
gross
Original Path:
trunk
Gravity inversion is disconnect from DataSource objects now in order to allow for more flexibility
when it comes to the definition of of Mapping and Regulariztion. GravityInversion does not hold a reference to the datasource object anymore.
use inv=GravityInversion()
inv.setUp(datasource)
rather than inv.setDataSource(datasource); inv.setUp()
Revision
4031 -
Directory Listing
Modified
Wed Oct 24 03:36:37 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Added option -x to run xterm to run-escript and replaced a few bashims.
Revision
4030 -
Directory Listing
Modified
Wed Oct 24 00:57:36 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Silenced the no-visit-in-path warning and fixed not-in-path run-escript in
utest.sh.
Revision
4029 -
Directory Listing
Modified
Wed Oct 24 00:29:15 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Reapplied changes from rev. 3853 which got lost in a merge...
Revision
4028 -
Directory Listing
Modified
Tue Oct 23 05:16:38 2012 UTC
(9 years, 7 months ago)
by
gross
Original Path:
trunk
changes in pycad to address feature request 0000661
Revision
4027 -
Directory Listing
Modified
Tue Oct 23 04:56:33 2012 UTC
(9 years, 7 months ago)
by
gross
Original Path:
trunk
setting a constant value to the initial solution of the Transport problem
had a problem. initial data object needs to be expanded before copied to the
paso transport object.
Revision
4026 -
Directory Listing
Modified
Tue Oct 23 03:12:50 2012 UTC
(9 years, 7 months ago)
by
gross
Original Path:
trunk
missing file
Revision
4025 -
Directory Listing
Modified
Mon Oct 22 08:18:47 2012 UTC
(9 years, 7 months ago)
by
gross
Original Path:
trunk
linearPDE.resetRightHandSideCoefficients has been implemented and tested.
Revision
4024 -
Directory Listing
Modified
Mon Oct 22 06:11:29 2012 UTC
(9 years, 7 months ago)
by
gross
Original Path:
trunk
tag testing for finley and dudley files added.
Revision
4023 -
Directory Listing
Modified
Tue Oct 16 04:17:48 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Another fix to the PDE assembly logic in ripley.
Revision
4022 -
Directory Listing
Modified
Mon Oct 15 23:52:24 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Fixed checks in ripley::addPDEToRHS().
Revision
4021 -
Directory Listing
Modified
Mon Oct 15 02:31:00 2012 UTC
(9 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Doco fixes.
Unit test fix for sys.version_info type change
Revision
4020 -
Directory Listing
Modified
Thu Oct 11 22:27:33 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Removed print() that slipped in in last commit.
Revision
4019 -
Directory Listing
Modified
Thu Oct 11 08:12:55 2012 UTC
(9 years, 7 months ago)
by
jfenwick
Original Path:
trunk
More tabbing errors,
range/xrange
...
Revision
4018 -
Directory Listing
Modified
Thu Oct 11 04:43:39 2012 UTC
(9 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Used "new" raise syntax in a few places
Fixed some tabbing
Fixed some funnies involving changes to xrange/range
added a quick and nasty __hash__ function to Symbol
def __hash__(self):
return id(self)
This does mean that __hash__ and == do not match exactly. Not sure if that matters for our purposes
Revision
4017 -
Directory Listing
Modified
Thu Oct 11 03:13:28 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Modified a test so roundoff errors don't cause failures.
Revision
4016 -
Directory Listing
Modified
Tue Oct 9 03:50:27 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Skip data source tests under MPI for now as there is no straightforward way
of comparing the data (saveVTK appears to be the best option).
Revision
4015 -
Directory Listing
Modified
Mon Oct 8 01:19:04 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Updated savanna options file to use latest compiler, mkl
Revision
4014 -
Directory Listing
Modified
Thu Oct 4 03:28:35 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Changed data source to use ripley's netCDF reader,
added tests and changed ERMapper test to have different x and y sizes.
Revision
4013 -
Directory Listing
Modified
Thu Oct 4 03:13:27 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Implemented netCDF grid reader analogous to binary grid reader in ripley.
Revision
4012 -
Directory Listing
Modified
Wed Oct 3 02:25:10 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Initialize X_reduced in forward model to avoid issues later on.
Revision
4011 -
Directory Listing
Modified
Wed Oct 3 00:47:55 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Updated test reference file.
Revision
4010 -
Directory Listing
Modified
Tue Oct 2 06:57:11 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Fixed a potential div by zero in ripley's automatic domain subdivider....
Revision
4009 -
Directory Listing
Modified
Tue Oct 2 05:53:37 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
don't try to flip y-coord in reader. some more fixes and doco.
Revision
4008 -
Directory Listing
Modified
Tue Oct 2 04:33:27 2012 UTC
(9 years, 7 months ago)
by
gross
Original Path:
trunk
point coordinates are now written in %.14e rather then %f. This fixes accuracy problems when it comes to geometrically small domains.
Revision
4007 -
Directory Listing
Modified
Tue Oct 2 02:12:01 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Doco updates.
Data source paddings now take x,y not xy,z as Z padding can be done by setting
vertical extents.
Revision
4006 -
Directory Listing
Modified
Fri Sep 28 06:16:46 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Update vm options to use pip-installed numpy.
Revision
4005 -
Directory Listing
Modified
Fri Sep 28 06:09:03 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
test fixes, doco updates, annoyance removals.
Revision
4004 -
Directory Listing
Modified
Fri Sep 28 04:45:25 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
don't use escript.escript.Data...
Revision
4003 -
Directory Listing
Modified
Fri Sep 28 00:20:01 2012 UTC
(9 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Load balancing on unit tests
Revision
4002 -
Directory Listing
Modified
Fri Sep 28 00:16:56 2012 UTC
(9 years, 7 months ago)
by
caltinay
Original Path:
trunk
Fixed a memory leak (freeing paso coupler) in ripley.
Revision
4001 -
Directory Listing
Modified
Thu Sep 27 01:35:52 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Removed obsolete files.
Revision
4000 -
Directory Listing
Modified
Thu Sep 27 01:32:07 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
s/escript/escore/
Revision
3999 -
Directory Listing
Modified
Thu Sep 27 01:31:07 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Splitting tests
Revision
3998 -
Directory Listing
Modified
Thu Sep 27 01:17:28 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Finley now throws in ownSample() for reduced function with mpisize>1.
Revision
3997 -
Directory Listing
Modified
Thu Sep 27 01:09:12 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Add note to documentation that saveDataCSV will not work in all cases.
Revision
3996 -
Directory Listing
Modified
Thu Sep 27 00:54:10 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Don't test saveCSV for cases it does not work with.
Revision
3995 -
Directory Listing
Modified
Wed Sep 26 12:43:17 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
More module fiddles
Revision
3994 -
Directory Listing
Modified
Wed Sep 26 07:38:38 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Install doco still needs work.
Removing some of the weird:
esys.finley.finley
type modules
Revision
3993 -
Directory Listing
Modified
Wed Sep 26 07:00:55 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Addressing mantis 651. Test for finley will fail under MPI since there is
sth wrong with the way ReducedContinuousFunction samples are interrogated.
Revision
3992 -
Directory Listing
Modified
Wed Sep 26 02:50:48 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Data.cpp: Removed some namespace ambiguities which fixes doxygen warnings, some
cleanup and reindent.
*: doxygen fixes.
Revision
3991 -
Directory Listing
Modified
Tue Sep 25 23:52:22 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Updated doxygen cfg file and made a few first changes to doco.
Revision
3990 -
Directory Listing
Modified
Tue Sep 25 05:03:20 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
First set of assorted epydoc fixes/additions.
Revision
3989 -
Directory Listing
Modified
Tue Sep 25 02:21:54 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
More copyright fixes.
pyvisi traces removed.
Some install doco
Revision
3988 -
Directory Listing
Modified
Mon Sep 24 01:08:19 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Scale coordinates if pyproj is not available
Revision
3987 -
Directory Listing
Modified
Sun Sep 23 23:24:37 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fix to test which fails when ripley adjusts number of elements (domain decomp.)
Revision
3986 -
Directory Listing
Modified
Sun Sep 23 23:01:10 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Added explicit cast to make osx happy.
Revision
3985 -
Directory Listing
Modified
Fri Sep 21 06:44:17 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Unit test for ER Mapper reader.
Revision
3984 -
Directory Listing
Modified
Fri Sep 21 06:41:54 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
invert Y coordinate in ripley's 3d data reader. This needs to be configurable
and added to 2d as well...
Revision
3983 -
Directory Listing
Modified
Fri Sep 21 06:41:03 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Use ReducedFunction for data sources.
Revision
3982 -
Directory Listing
Modified
Fri Sep 21 03:23:22 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
More edits + removing pyvisi from trunk
Revision
3981 -
Directory Listing
Modified
Fri Sep 21 02:47:54 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
First pass of updating copyright notices
Revision
3980 -
Directory Listing
Modified
Fri Sep 21 01:55:39 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Now using NullCellValue to initialise data object for ERS reader.
Revision
3979 -
Directory Listing
Modified
Thu Sep 20 06:18:49 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fixed tests under MPI.
Revision
3978 -
Directory Listing
Modified
Thu Sep 20 04:36:17 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Make sympy optional as it was intended initially. Trying to instantiate anything
from symbolic will raise an exception if sympy is not available.
Revision
3977 -
Directory Listing
Modified
Thu Sep 20 04:27:10 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Export KMP_MONITOR_STACKSIZE so tests work on savanna.
Revision
3976 -
Directory Listing
Modified
Thu Sep 20 03:26:47 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
fixed python-2.7'ism.
Revision
3975 -
Directory Listing
Modified
Thu Sep 20 01:54:06 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Merged symbolic branch into trunk. Curious what daniel and spartacus have to
say...
Revision
3972 -
Directory Listing
Modified
Wed Sep 19 03:08:39 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Can now constrain sides of domain.
Revision
3971 -
Directory Listing
Modified
Wed Sep 19 02:55:35 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Implemented binary grid reader in ripley which is now used in ER Mapper source.
Interface/details likely to change but need to get this running now.
Revision
3970 -
Directory Listing
Modified
Wed Sep 19 02:28:27 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
More install doc fixes
Revision
3969 -
Directory Listing
Modified
Tue Sep 18 05:34:38 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Removing reference to nose
Revision
3968 -
Directory Listing
Modified
Mon Sep 17 06:30:02 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Starting updates to the install guide
Revision
3967 -
Directory Listing
Modified
Mon Sep 17 04:02:58 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Changes to SConstruct to allow building with clang
Revision
3966 -
Directory Listing
Modified
Mon Sep 17 00:45:39 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Changed unit scale for ER Mapper files. Fixed an issue with UBC source.
Revision
3965 -
Directory Listing
Modified
Fri Sep 14 01:23:17 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Data sources have to end up in the Function fs or we get into trouble when
interpolating. Now using setValueOfDataPoint() which doesn't seem to slow
things down too much.
Revision
3964 -
Directory Listing
Modified
Thu Sep 13 03:49:55 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Hopefully this will fix the interpolation in data sources.
Revision
3963 -
Directory Listing
Modified
Thu Sep 13 01:39:00 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Fix to keep the warning-free-build happy
Revision
3962 -
Directory Listing
Modified
Tue Sep 11 09:12:07 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Fix in brick for ambiguous typing.
Python work around for unit tests.
Passing cpp tests as well.
omp is disabled due to a weird linking error.
Revision
3961 -
Directory Listing
Modified
Tue Sep 11 07:21:41 2012 UTC
(9 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Options file for mole.
Work around for python compile errors
Revision
3960 -
Directory Listing
Modified
Mon Sep 10 01:39:40 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Added accessors to fwd model, regularization and cost function plus access
to gravity survey data.
Revision
3959 -
Directory Listing
Modified
Fri Sep 7 04:48:07 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
support for geodetic coordinates in ER Mapper files. Correction to UTM
conversion (now assumes southern hemisphere).
Revision
3958 -
Directory Listing
Modified
Fri Sep 7 02:56:42 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fixes to netcdf data source and new ERS (ER Mapper) datasource.
Revision
3957 -
Directory Listing
Modified
Wed Sep 5 23:49:23 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Do not require pyproj module-wide. Print a warning if it is not available but
needed instead of raising an exception.
Revision
3956 -
Directory Listing
Modified
Wed Sep 5 04:57:43 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fixes to netcdf reader for inversions.
Revision
3955 -
Directory Listing
Modified
Tue Sep 4 01:44:41 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Added CentOS 6 vm options file.
Revision
3954 -
Directory Listing
Modified
Tue Sep 4 01:43:58 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fixed an issue with incompatible nose.
Revision
3953 -
Directory Listing
Modified
Mon Sep 3 00:57:12 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Some test output adjustments.
Revision
3952 -
Directory Listing
Modified
Sun Sep 2 23:42:25 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Made a test slightly more relaxed since roundoff errors caused it to fail on
one system.
Revision
3951 -
Directory Listing
Modified
Tue Aug 28 23:58:08 2012 UTC
(9 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fixed tests with python versions <2.7.
Revision
3950 -
Directory Listing
Modified
Fri Aug 24 06:10:02 2012 UTC
(9 years, 9 months ago)
by
caltinay
Original Path:
trunk
More tests and corrections in the alternative minimizers.
Revision
3949 -
Directory Listing
Modified
Fri Aug 24 02:37:47 2012 UTC
(9 years, 9 months ago)
by
caltinay
Original Path:
trunk
Added tests for mappings.
Revision
3948 -
Directory Listing
Modified
Fri Aug 24 01:01:34 2012 UTC
(9 years, 9 months ago)
by
caltinay
Original Path:
trunk
Some interface changes to make the inversion more flexible.
Revision
3947 -
Directory Listing
Modified
Wed Aug 22 23:19:10 2012 UTC
(9 years, 9 months ago)
by
caltinay
Original Path:
trunk
Compiling and installing downunder module now. Adjusted import statements
accordingly. Added a gravity test run.
Revision
3946 -
Directory Listing
Modified
Wed Aug 22 02:08:12 2012 UTC
(9 years, 9 months ago)
by
caltinay
Original Path:
trunk
Initial import of inversion code from devteam area, rev. 51.
Nothing is scons built/installed/tested yet.
Revision
3945 -
Directory Listing
Modified
Tue Aug 21 04:11:13 2012 UTC
(9 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Changing utest behaviour for MPI
Revision
3944 -
Directory Listing
Modified
Mon Aug 20 02:11:22 2012 UTC
(9 years, 9 months ago)
by
caltinay
Original Path:
trunk
Fixed ordering of Hex's in weipa's ripley writer.
Fixed an issue with auto domain subdivisions in ripley Brick.
Revision
3943 -
Directory Listing
Modified
Thu Aug 9 04:43:24 2012 UTC
(9 years, 9 months ago)
by
caltinay
Original Path:
trunk
Added heuristics for number of domain subdivisions to ripley so ripley domains
can now be created without specifying the values manually (but a warning will
be printed).
Revision
3942 -
Directory Listing
Modified
Fri Jul 27 01:04:48 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Porting changes back from 3.3 release branch
Revision
3941 -
Directory Listing
Modified
Fri Jul 27 00:38:10 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Some more test disabling
Revision
3940 -
Directory Listing
Modified
Thu Jul 26 05:54:58 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Disabling tests which do not allow MPI
Previously we allowed these if there was only one rank
Revision
3939 -
Directory Listing
Modified
Mon Jul 23 01:50:46 2012 UTC
(9 years, 10 months ago)
by
caltinay
Original Path:
trunk
Added return value checks for freopen in mpi redirect code. Ubuntu has a
warn_unused_result attribute set for the function.
Re-indented the file while at it.
Revision
3934 -
Directory Listing
Modified
Fri Jul 13 09:01:16 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Added unit test for tagreader
Revision
3931 -
Directory Listing
Modified
Tue Jul 10 00:39:09 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Fixing spelling
Revision
3928 -
Directory Listing
Modified
Mon Jul 9 23:23:43 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Do not allow attempts to setValue using a Locator which does not match the funcionSpace of the Data
Revision
3927 -
Directory Listing
Modified
Mon Jul 9 11:11:47 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Avoid warning
Revision
3923 -
Directory Listing
Modified
Mon Jul 9 05:12:12 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Fixing build error.
Revision
3922 -
Directory Listing
Modified
Mon Jul 9 02:19:51 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Adds setvalue to locator
Addresses mantis #531
Revision
3921 -
Directory Listing
Modified
Thu Jul 5 05:02:49 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Fix build error
Revision
3920 -
Directory Listing
Modified
Thu Jul 5 03:42:30 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Copied over tagname reading stuff from finley
Revision
3919 -
Directory Listing
Modified
Thu Jul 5 03:12:02 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Don't know what caused this to show as an error.
Compiler update perhaps?
Revision
3918 -
Directory Listing
Modified
Thu Jul 5 02:44:07 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Added unit test which uses the TestDomain to check reduction.
TestDomains can no longer be created directly from python
(fixes problem I had earlier)
TestDomain can now create testdomains with aribtrarily sized
coordinate vectors.
Revision
3917 -
Directory Listing
Modified
Thu Jul 5 00:17:50 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Fixing a bug in lazy reduction operations.
Will add extra test to prevent regression once I can find out why the test is crashing
Revision
3916 -
Directory Listing
Modified
Wed Jul 4 06:16:52 2012 UTC
(9 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Deal correctly with scalars passed into inplace update operators.
Fixes mantis 669
Revision
3915 -
Directory Listing
Modified
Mon Jun 25 02:17:58 2012 UTC
(9 years, 11 months ago)
by
caltinay
Original Path:
trunk
Added declspecs for all ripley classes.
Revision
3914 -
Directory Listing
Modified
Wed Jun 20 04:51:47 2012 UTC
(9 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Only allow setX from ContinuousFunctions.
This addresses mantis 644.
Revision
3913 -
Directory Listing
Modified
Tue Jun 19 06:21:58 2012 UTC
(9 years, 11 months ago)
by
caltinay
Original Path:
trunk
Fixed misuse of getSampleDataRO with lazy data in ripley.
Revision
3912 -
Directory Listing
Modified
Fri Jun 15 05:02:42 2012 UTC
(9 years, 11 months ago)
by
jfenwick
Original Path:
trunk
GetMeshFromFile wrapper to load .fly or .msh depending on the extension.
Note that this only works on one of the two formats named .msh
Addresses mantis issue 641.
Revision
3911 -
Directory Listing
Modified
Thu Jun 14 01:01:03 2012 UTC
(9 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Copyright changes
Revision
3910 -
Directory Listing
Modified
Thu Jun 14 00:45:03 2012 UTC
(9 years, 11 months ago)
by
gross
Original Path:
trunk
Small bug fixed.
Revision
3909 -
Directory Listing
Modified
Wed Jun 13 07:03:06 2012 UTC
(9 years, 11 months ago)
by
gross
Original Path:
trunk
darcy solver removes hydrostatic pressure from problem now
Revision
3908 -
Directory Listing
Modified
Wed Jun 13 05:43:45 2012 UTC
(9 years, 11 months ago)
by
caltinay
Original Path:
trunk
Fixed an error in ripley computing shared node id's.
pythonMPIredirect now redirects again.
Revision
3907 -
Directory Listing
Modified
Fri Jun 8 01:20:09 2012 UTC
(9 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Only switch on useElementsOnFace by default where we actually support it
Revision
3906 -
Directory Listing
Modified
Thu Jun 7 11:00:50 2012 UTC
(9 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Disable AMG on MPI builds
Revision
3905 -
Directory Listing
Modified
Tue Jun 5 08:33:41 2012 UTC
(9 years, 11 months ago)
by
gross
Original Path:
trunk
length scale changed
Revision
3904 -
Directory Listing
Modified
Tue Jun 5 08:30:24 2012 UTC
(9 years, 11 months ago)
by
gross
Original Path:
trunk
incorrect macro element argument removed
Revision
3903 -
Directory Listing
Modified
Tue Jun 5 08:26:20 2012 UTC
(9 years, 11 months ago)
by
gross
Original Path:
trunk
offset removed: not clear why this was there
Revision
3901 -
Directory Listing
Modified
Wed May 23 08:09:45 2012 UTC
(10 years ago)
by
jfenwick
Original Path:
trunk
Rectangle and Brick use rich face element by default.
This is to address issue #653
Updated unit tests to explicitly not use them where they didn't
specify previoulsy
Revision
3897 -
Directory Listing
Modified
Wed May 16 03:17:26 2012 UTC
(10 years ago)
by
jfenwick
Original Path:
trunk
correcting example
Revision
3896 -
Directory Listing
Modified
Fri May 11 01:31:29 2012 UTC
(10 years ago)
by
caltinay
Original Path:
trunk
Re-enable numpy header detection with python 2.
Revision
3895 -
Directory Listing
Modified
Mon Apr 16 00:09:42 2012 UTC
(10 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Adding some files which went missing in the merge
Revision
3894 -
Directory Listing
Modified
Wed Apr 11 03:13:15 2012 UTC
(10 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Still need to add notes to the install guide about Python3.
Revision
3893 -
Directory Listing
Modified
Wed Apr 11 01:40:10 2012 UTC
(10 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Pycad now generates scripts with floating points at 6 decimal places.
Tests have been ammended to match this.
Revision
3892 -
Directory Listing
Modified
Tue Apr 10 08:57:23 2012 UTC
(10 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Merged changes across from the attempt2 branch.
This version builds and passes python2 tests.
It also passes most python3 tests.
Revision
3887 -
Directory Listing
Modified
Thu Apr 5 03:14:59 2012 UTC
(10 years, 1 month ago)
by
gross
Original Path:
trunk
low level system in AMG is created one only now.
Revision
3886 -
Directory Listing
Modified
Thu Apr 5 00:50:30 2012 UTC
(10 years, 1 month ago)
by
gross
Original Path:
trunk
some minor problems with MPI AMG fixed.
Revision
3885 -
Directory Listing
Modified
Wed Apr 4 22:12:26 2012 UTC
(10 years, 1 month ago)
by
gross
Original Path:
trunk
some fix in AMG
Revision
3884 -
Directory Listing
Modified
Wed Apr 4 04:55:43 2012 UTC
(10 years, 1 month ago)
by
gross
Original Path:
trunk
some fix in AMG
Revision
3883 -
Directory Listing
Modified
Mon Mar 26 03:24:14 2012 UTC
(10 years, 2 months ago)
by
caltinay
Original Path:
trunk
Modified dlopenflags in escript's init module so newer MKL libraries can
successfully load support libraries.
Revision
3882 -
Directory Listing
Modified
Thu Mar 22 02:15:57 2012 UTC
(10 years, 2 months ago)
by
caltinay
Original Path:
trunk
Added another constraint for the numpy optimized array access: endianness.
The scipy netcdf reader gave me big endian data which resulted in garbage.
Can use the astype() method in python to convert.
Revision
3867 -
Directory Listing
Modified
Thu Mar 15 05:45:54 2012 UTC
(10 years, 2 months ago)
by
caltinay
Original Path:
trunk
weipa treats shapes (1,) and (1,1) as scalars. Fixes bogus output in VTK writer.
Revision
3866 -
Directory Listing
Modified
Wed Mar 14 02:06:13 2012 UTC
(10 years, 2 months ago)
by
caltinay
Original Path:
trunk
Use system silo on guineapig now.
Revision
3865 -
Directory Listing
Modified
Mon Mar 12 23:49:05 2012 UTC
(10 years, 2 months ago)
by
caltinay
Original Path:
trunk
Re-enabled threaded MKL on epic.
Revision
3863 -
Directory Listing
Modified
Mon Mar 12 00:15:40 2012 UTC
(10 years, 2 months ago)
by
gross
Original Path:
trunk
some debug prints removed
Revision
3861 -
Directory Listing
Modified
Fri Mar 9 02:06:29 2012 UTC
(10 years, 2 months ago)
by
caltinay
Original Path:
trunk
Added options file that disables openMP and replaces the MKL library for savanna.
Revision
3853 -
Directory Listing
Modified
Thu Mar 1 07:25:03 2012 UTC
(10 years, 2 months ago)
by
caltinay
Original Path:
trunk
Fixed hybrid mode when using OpenMPI by adding --cpus-per-rank argument to
mpirun in the launcher. Updated epic options file accordingly.
Revision
3852 -
Directory Listing
Modified
Thu Mar 1 05:34:52 2012 UTC
(10 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Correcting some indent errors
Revision
3851 -
Directory Listing
Modified
Wed Feb 29 05:23:30 2012 UTC
(10 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Start of cross-compile build for py3
Revision
3850 -
Directory Listing
Modified
Tue Feb 28 06:04:42 2012 UTC
(10 years, 2 months ago)
by
caltinay
Original Path:
trunk
Support for CSC in ripley.
Revision
3843 -
Directory Listing
Modified
Mon Feb 27 05:50:58 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Updated epic options, disabled OpenMP until problems solved.
Revision
3842 -
Directory Listing
Modified
Mon Feb 27 04:19:16 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Updated savanna libraries and compiler version.
Revision
3841 -
Directory Listing
Modified
Mon Feb 27 04:18:53 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Added support for OFFSET1 matrices in ripley.
Revision
3837 -
Directory Listing
Modified
Thu Feb 16 03:58:58 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Test cleanup.
Revision
3836 -
Directory Listing
Modified
Thu Feb 16 03:17:18 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Transport problem support for ripley.
Revision
3835 -
Directory Listing
Modified
Wed Feb 15 23:19:01 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
and another attempt to fix MPI compilation
Revision
3834 -
Directory Listing
Modified
Wed Feb 15 07:09:09 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
some declaration problems fixed
Revision
3833 -
Directory Listing
Modified
Wed Feb 15 06:19:45 2012 UTC
(10 years, 3 months ago)
by
lgao
Original Path:
trunk
Fix the merging problem for this file.
Revision
3830 -
Directory Listing
Modified
Wed Feb 15 04:27:47 2012 UTC
(10 years, 3 months ago)
by
lgao
Original Path:
trunk
Add comments for Smoother
Revision
3829 -
Directory Listing
Modified
Wed Feb 15 03:33:08 2012 UTC
(10 years, 3 months ago)
by
lgao
Original Path:
trunk
Fix warnings from another machine.
Revision
3828 -
Directory Listing
Modified
Wed Feb 15 03:27:58 2012 UTC
(10 years, 3 months ago)
by
lgao
Original Path:
trunk
Fix all warnings reported on guineapig.
Revision
3827 -
Directory Listing
Modified
Tue Feb 14 11:42:08 2012 UTC
(10 years, 3 months ago)
by
lgao
Original Path:
trunk
Merge branch "amg_from_3530" back into trunk.
Revision
3825 -
Directory Listing
Modified
Tue Feb 14 06:11:58 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
don't call MPI withing parallel regions
Revision
3824 -
Directory Listing
Modified
Tue Feb 14 01:22:16 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
fix for openmp
Revision
3823 -
Directory Listing
Modified
Mon Feb 13 08:09:32 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
some fixes for openmp/mpi compilation and linearNC can now handel constraints.
Revision
3822 -
Directory Listing
Modified
Mon Feb 13 06:22:06 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
Transport solver supports now constraints (except the linear CN)
Revision
3816 -
Directory Listing
Modified
Thu Feb 9 05:46:36 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
WrappedArray now honours the 'strides' field in the numpy array interface
and supports more data types. Fixes test failures on savanna which for some
reason did not surface on other machines.
Revision
3814 -
Directory Listing
Modified
Thu Feb 9 00:11:08 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Changes to savanna options file to use intel 12 and numpy 1.6.1.
Revision
3808 -
Directory Listing
Modified
Mon Feb 6 06:17:47 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
some modifications to the test examples
Revision
3807 -
Directory Listing
Modified
Mon Feb 6 06:14:25 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
LINEAR_CRANK_NICOLSON solver added
Revision
3806 -
Directory Listing
Modified
Mon Feb 6 02:32:48 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
ripley::getSize() also returns circumcircle now.
Revision
3805 -
Directory Listing
Modified
Mon Feb 6 01:42:20 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
return circumcircle now.
Revision
3804 -
Directory Listing
Modified
Mon Feb 6 00:48:22 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Fixed utest.sh generator so tests can be run if the installation prefix is
not `pwd`
Revision
3803 -
Directory Listing
Modified
Fri Feb 3 06:16:30 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Fixes to ripley unit test setup
Revision
3802 -
Directory Listing
Modified
Fri Feb 3 06:05:57 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Quick fix for potential invalid memory access in paso.
Revision
3801 -
Directory Listing
Modified
Fri Feb 3 05:21:02 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Fixed OpenMP bug in paso local AMG.
Revision
3800 -
Directory Listing
Modified
Fri Feb 3 01:18:06 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Fixed integration with constant data on ripley.
Revision
3799 -
Directory Listing
Modified
Thu Feb 2 10:41:28 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
test for gradient of constant data added
Revision
3798 -
Directory Listing
Modified
Thu Feb 2 09:47:27 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
test for interpolation of constant data added
Revision
3797 -
Directory Listing
Modified
Thu Feb 2 09:28:59 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
test for integration of constant data added.
Revision
3796 -
Directory Listing
Modified
Thu Feb 2 06:26:15 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
typo in grad calculation fixed.
Revision
3795 -
Directory Listing
Modified
Thu Feb 2 05:54:34 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Had to remove 'nowait' directive from PDE boundary conditions since all
4 (2D) / 8 (3D) values are updated the way it is implemented. This caused
race conditions when updating RHS.
Revision
3794 -
Directory Listing
Modified
Wed Feb 1 23:02:26 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
uninitialied variable fixed.
Revision
3793 -
Directory Listing
Modified
Wed Feb 1 07:39:43 2012 UTC
(10 years, 3 months ago)
by
gross
Original Path:
trunk
new implementation of FCT solver with some modifications to the python interface
Revision
3792 -
Directory Listing
Modified
Wed Feb 1 06:16:25 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Merged ripley rectangular domain into trunk.
Revision
3788 -
Directory Listing
Modified
Mon Jan 30 04:41:33 2012 UTC
(10 years, 3 months ago)
by
caltinay
Original Path:
trunk
Fixed showEscriptParams() which hasn't worked for 2 years or so.
Revision
3787 -
Directory Listing
Modified
Fri Jan 27 01:43:47 2012 UTC
(10 years, 4 months ago)
by
caltinay
Original Path:
trunk
Changed test cases from y.interpolateTable(...x...) to x.interpolateTable(...y...)
Revision
3786 -
Directory Listing
Modified
Wed Jan 25 04:46:39 2012 UTC
(10 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Made 2D interpolation call consistant with 1D and 3D.
Doco updates later
Revision
3784 -
Directory Listing
Modified
Wed Jan 25 01:31:42 2012 UTC
(10 years, 4 months ago)
by
caltinay
Original Path:
trunk
Implemented optimized copy from numpy in WrappedArray (#652).
Revision
3782 -
Directory Listing
Modified
Tue Jan 24 01:30:38 2012 UTC
(10 years, 4 months ago)
by
caltinay
Original Path:
trunk
Another attempt to fix #649
Revision
3778 -
Directory Listing
Modified
Fri Jan 20 05:09:52 2012 UTC
(10 years, 4 months ago)
by
gross
Original Path:
trunk
better error reporting from UMFPACK
Revision
3775 -
Directory Listing
Modified
Wed Jan 18 07:26:34 2012 UTC
(10 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Weipa updated
Revision
3774 -
Directory Listing
Modified
Wed Jan 18 06:29:34 2012 UTC
(10 years, 4 months ago)
by
jfenwick
Original Path:
trunk
dudley, pasowrap, pycad
Revision
3772 -
Directory Listing
Modified
Wed Jan 18 04:19:33 2012 UTC
(10 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Converting finley directories
Revision
3771 -
Directory Listing
Modified
Wed Jan 18 02:30:48 2012 UTC
(10 years, 4 months ago)
by
jfenwick
Original Path:
trunk
First stage of 2.6/3 conversion
Revision
3747 -
Directory Listing
Modified
Thu Dec 15 02:13:14 2011 UTC
(10 years, 5 months ago)
by
gross
Original Path:
trunk
inconsistent notation fixed.
Revision
3739 -
Directory Listing
Modified
Tue Dec 13 00:48:26 2011 UTC
(10 years, 5 months ago)
by
caltinay
Original Path:
trunk
Ok, the python wrappers do use esysUtils for the exception translator.
Anything else?
Revision
3738 -
Directory Listing
Modified
Tue Dec 13 00:37:55 2011 UTC
(10 years, 5 months ago)
by
caltinay
Original Path:
trunk
Windoze: Fixed warning and linker error
Don't look for non-existing pasowrap tests.
Revision
3737 -
Directory Listing
Modified
Tue Dec 13 00:04:39 2011 UTC
(10 years, 5 months ago)
by
caltinay
Original Path:
trunk
Reordered and removed superfluous libraries from link lines. Hope W32 likes
that.
Revision
3736 -
Directory Listing
Modified
Mon Dec 12 01:26:51 2011 UTC
(10 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Fixed apparent multiple instances of Esys
Revision
3734 -
Directory Listing
Modified
Fri Dec 9 04:48:08 2011 UTC
(10 years, 5 months ago)
by
caltinay
Original Path:
trunk
pycad kept creating temporary files. This should hopefully fix it.
Revision
3729 -
Directory Listing
Modified
Thu Dec 8 06:46:49 2011 UTC
(10 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Fixed mistake in Finley_Assemble_PDE and the dudley equivalent.
Cihan - you might want to look to see if Ripley is affected
Revision
3728 -
Directory Listing
Modified
Thu Dec 8 05:11:19 2011 UTC
(10 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Oops
Revision
3727 -
Directory Listing
Modified
Thu Dec 8 04:55:56 2011 UTC
(10 years, 5 months ago)
by
jfenwick
Original Path:
trunk
More broken linkage
Revision
3726 -
Directory Listing
Modified
Thu Dec 8 04:35:52 2011 UTC
(10 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Fixing some broken linkage on windows
Revision
3723 -
Directory Listing
Modified
Wed Dec 7 05:59:04 2011 UTC
(10 years, 5 months ago)
by
caltinay
Original Path:
trunk
Don't eat exceptions when using MPI with one rank.
Revision
3720 -
Directory Listing
Modified
Wed Dec 7 04:32:21 2011 UTC
(10 years, 5 months ago)
by
caltinay
Original Path:
trunk
Fixed off-by-one error in FunctionSpace
Revision
3689 -
Directory Listing
Modified
Wed Nov 23 01:39:45 2011 UTC
(10 years, 6 months ago)
by
gross
Original Path:
trunk
integration nodes fixed
Revision
3681 -
Directory Listing
Modified
Fri Nov 18 04:54:15 2011 UTC
(10 years, 6 months ago)
by
caltinay
Original Path:
trunk
Moved implementation of getTransportTypeId() and getSystemMatrixTypeId() into
pasowrap.
Revision
3678 -
Directory Listing
Modified
Thu Nov 17 06:32:05 2011 UTC
(10 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Reversing other changes which made it in somehow
Revision
3677 -
Directory Listing
Modified
Thu Nov 17 04:01:12 2011 UTC
(10 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed order of libraries which makes static esysUtils work again.
Revision
3676 -
Directory Listing
Modified
Thu Nov 17 03:52:25 2011 UTC
(10 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Removed some debug text
Corrected some dudley where they should not have been.
Set savanna to build shared for now
Revision
3675 -
Directory Listing
Modified
Thu Nov 17 00:53:38 2011 UTC
(10 years, 6 months ago)
by
jfenwick
Original Path:
trunk
pasowrap joins the trunk.
Revision
3667 -
Directory Listing
Modified
Tue Nov 15 23:29:23 2011 UTC
(10 years, 6 months ago)
by
gross
Original Path:
trunk
better consistence of script and notation
Revision
3650 -
Directory Listing
Modified
Fri Nov 4 07:02:55 2011 UTC
(10 years, 6 months ago)
by
gross
Original Path:
trunk
ode solver added
Revision
3649 -
Directory Listing
Modified
Fri Nov 4 04:35:15 2011 UTC
(10 years, 6 months ago)
by
gross
Original Path:
trunk
gmsh reader understand name tags now.
Revision
3648 -
Directory Listing
Modified
Thu Nov 3 08:13:31 2011 UTC
(10 years, 6 months ago)
by
gross
Original Path:
trunk
typos fixed
Revision
3647 -
Directory Listing
Modified
Tue Nov 1 23:33:18 2011 UTC
(10 years, 6 months ago)
by
lgao
Original Path:
trunk
With this option file, unit tests finished successfully with the following order to load module:
module load mpi/gcc/openmpi/1.4.3
module load python/2.6.7
module load boost/1.46.1-python-2.6
module load netcdf/4.0.1
module load scons/2.0.1-python-2.6
module load intel-compilers/11.1.075
module load intel-mkl/10.3.5.220
module load python-numpy/1.3.0-python-2.6
module load cppunit/1.12.1
module load python-matplotlib/0.98.5.3-python-2.6
module load hdf5/1.8.6
module load silo/4.7.2
module load hypre/2.0.0
HYPRE is loaded but not used yet since the installed hypre module on epic comes with static library only.
Revision
3646 -
Directory Listing
Modified
Fri Oct 28 05:20:38 2011 UTC
(10 years, 7 months ago)
by
lgao
Original Path:
trunk
working option file on epic
Revision
3645 -
Directory Listing
Modified
Fri Oct 28 00:11:30 2011 UTC
(10 years, 7 months ago)
by
caltinay
Original Path:
trunk
Fixed typos.
Revision
3644 -
Directory Listing
Modified
Thu Oct 27 06:42:56 2011 UTC
(10 years, 7 months ago)
by
gross
Original Path:
trunk
hint to add surface items in pycad
Revision
3643 -
Directory Listing
Modified
Thu Oct 27 06:23:16 2011 UTC
(10 years, 7 months ago)
by
caltinay
Original Path:
trunk
Updated savanna options file. We're now using silo 4.8, netcdf 4.1.1 and boost 1.42 on savanna.
Revision
3642 -
Directory Listing
Modified
Thu Oct 27 03:41:51 2011 UTC
(10 years, 7 months ago)
by
caltinay
Original Path:
trunk
Assorted spelling/comment fixes in paso.
Revision
3641 -
Directory Listing
Modified
Thu Oct 27 02:16:12 2011 UTC
(10 years, 7 months ago)
by
gross
Original Path:
trunk
more work on the assemblage
Revision
3639 -
Directory Listing
Modified
Tue Oct 25 02:13:26 2011 UTC
(10 years, 7 months ago)
by
caltinay
Original Path:
trunk
Assorted spelling fixes in finley C.
Revision
3637 -
Directory Listing
Modified
Fri Oct 21 04:29:33 2011 UTC
(10 years, 7 months ago)
by
caltinay
Original Path:
trunk
Fixed memory leaks in loadMesh() for dudley and finley.
Revision
3635 -
Directory Listing
Modified
Fri Oct 21 00:26:01 2011 UTC
(10 years, 7 months ago)
by
caltinay
Original Path:
trunk
Fixed minor issues.
Revision
3630 -
Directory Listing
Modified
Wed Oct 19 03:04:53 2011 UTC
(10 years, 7 months ago)
by
gross
Original Path:
trunk
minor fix to dary flux
Revision
3629 -
Directory Listing
Modified
Wed Oct 19 03:04:27 2011 UTC
(10 years, 7 months ago)
by
gross
Original Path:
trunk
darcy example added
Revision
3628 -
Directory Listing
Modified
Wed Oct 19 02:09:36 2011 UTC
(10 years, 7 months ago)
by
caltinay
Original Path:
trunk
Prepend our libraries instead of appending. This should fix HYPRE link
issue on epic.
Revision
3627 -
Directory Listing
Modified
Fri Oct 14 13:54:49 2011 UTC
(10 years, 7 months ago)
by
caltinay
Original Path:
trunk
Reverted some changes that slipped in and caused the Silo writer to not behave.
Revision
3626 -
Directory Listing
Modified
Fri Oct 14 02:34:55 2011 UTC
(10 years, 7 months ago)
by
gross
Original Path:
trunk
Silo and cppunit added for epic (there is still a problem with hypre)
Revision
3625 -
Directory Listing
Modified
Thu Oct 13 01:54:27 2011 UTC
(10 years, 7 months ago)
by
gross
Original Path:
trunk
missing argument in gmsh reader documentation added
Revision
3624 -
Directory Listing
Modified
Wed Oct 12 07:58:25 2011 UTC
(10 years, 7 months ago)
by
gross
Original Path:
trunk
changes for epic.ivec.org
Revision
3623 -
Directory Listing
Modified
Tue Oct 11 03:59:40 2011 UTC
(10 years, 7 months ago)
by
caltinay
Original Path:
trunk
Added option to enable/disable saving of mesh data in weipa.
Now defaults to false since it's mainly for debugging.
Fixes #640.
Revision
3622 -
Directory Listing
Modified
Thu Oct 6 08:06:41 2011 UTC
(10 years, 7 months ago)
by
trankine
Original Path:
trunk
Epic.ivec.org scons build template
Revision
3620 -
Directory Listing
Modified
Wed Oct 5 06:06:14 2011 UTC
(10 years, 7 months ago)
by
gross
Original Path:
trunk
bug fixed
Revision
3619 -
Directory Listing
Modified
Wed Oct 5 03:53:34 2011 UTC
(10 years, 7 months ago)
by
gross
Original Path:
trunk
some rescaling of permeability in the darcy solver added
Revision
3618 -
Directory Listing
Modified
Fri Sep 30 04:07:09 2011 UTC
(10 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Allowed 'no' as an mpi type.
Allowed SVN_VERSION to be specified from the command line.
TO BE USED ONLY FOR RELEASE PURPOSES where you do not have a .svn checkout
Revision
3616 -
Directory Listing
Modified
Fri Sep 30 00:56:37 2011 UTC
(10 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Center a table that I noticed and use upquote package to stop LaTeX from
mucking about with ' in python code.
Fixes #632
Revision
3607 -
Directory Listing
Modified
Mon Sep 19 22:08:24 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fixed double/float warning.
Revision
3606 -
Directory Listing
Modified
Mon Sep 19 16:26:51 2011 UTC
(10 years, 8 months ago)
by
trankine
Original Path:
trunk
Trial nosetests runner tests for better integration
Revision
3605 -
Directory Listing
Modified
Mon Sep 19 07:47:23 2011 UTC
(10 years, 8 months ago)
by
trankine
Original Path:
trunk
cppunit actually does do the install step in the msvc project files and does put the build products where scons can find them.
Revision
3604 -
Directory Listing
Modified
Mon Sep 19 04:47:53 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
Changed detection of pdflatex since some versions of scons require .ltx or
.latex file extensions when pdflatex is not available.
Also added cleanup of utest.sh and buildvars file.
Revision
3603 -
Directory Listing
Modified
Mon Sep 19 03:42:53 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fixed some unused var errors in non-mpi build.
Revision
3602 -
Directory Listing
Modified
Mon Sep 19 02:38:11 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fix scons checks on windows
Revision
3601 -
Directory Listing
Modified
Mon Sep 19 01:21:33 2011 UTC
(10 years, 8 months ago)
by
trankine
Original Path:
trunk
Updating cgisrv3 options for external cppunit - because I cant see brackets.
Revision
3600 -
Directory Listing
Modified
Mon Sep 19 00:58:15 2011 UTC
(10 years, 8 months ago)
by
trankine
Original Path:
trunk
Updating cgisrv3 options for external cppunit
Revision
3599 -
Directory Listing
Modified
Fri Sep 16 01:34:46 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
Updated install guide to mention external CppUnit dependency for unit tests.
Revision
3598 -
Directory Listing
Modified
Fri Sep 16 01:01:17 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
New config option build_shared (which replaces share_paso & share_esysUtils).
Also enabled building escriptreader library on Windows which should now
work in both shared and static mode.
Revision
3597 -
Directory Listing
Modified
Thu Sep 15 06:03:17 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
Switching to external cppunit:
-removed tools/CppUnitTest
-updated scons script and files
-updated tests to changed API
-updated readme
Bumped scons options file version to 201. Additions:
-cppunit*
-boomeramg*
-vsl_random
Revision
3596 -
Directory Listing
Modified
Thu Sep 15 05:58:15 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
Deleted some obsolete options files.
Revision
3595 -
Directory Listing
Modified
Thu Sep 15 05:56:47 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
Skip some more gmsh-dependend tests if gmsh is not available.
Revision
3594 -
Directory Listing
Modified
Thu Sep 15 00:45:04 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
Added missing declspecs in paso. Thanks Terry.
Revision
3589 -
Directory Listing
Modified
Mon Sep 12 03:25:25 2011 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk
This fixes the bug 616. Problem was that the Coupler used the pattern of original rather than unrolled pattern.
Revision
3588 -
Directory Listing
Modified
Mon Sep 12 01:53:17 2011 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk
Typo fixed.
Revision
3586 -
Directory Listing
Modified
Fri Sep 9 04:02:29 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
run_domainreaders now passes some parameters to the constructors so
kwargs is tested to be working. Addresses #578.
Revision
3585 -
Directory Listing
Modified
Wed Sep 7 06:16:08 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fix for #582: Determine if gmsh was compiled with MPI support and use
MPI_Comm_spawn to invoke it if necessary.
Revision
3584 -
Directory Listing
Modified
Tue Sep 6 11:08:34 2011 UTC
(10 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Removing Locator.setValue for now
Revision
3583 -
Directory Listing
Modified
Tue Sep 6 04:27:59 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
Updated shake75 options file.
Revision
3582 -
Directory Listing
Modified
Tue Sep 6 02:02:17 2011 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk
some clarification of the documentation on the Stokes solver.
Revision
3581 -
Directory Listing
Modified
Tue Sep 6 00:52:58 2011 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk
Used python 2.7 syntax. Sorry!
Revision
3580 -
Directory Listing
Modified
Tue Sep 6 00:31:35 2011 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk
error handeling for python compilation improved.
Revision
3579 -
Directory Listing
Modified
Mon Sep 5 23:25:01 2011 UTC
(10 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Stopping unit test from failing until I can get it working
Revision
3578 -
Directory Listing
Modified
Mon Sep 5 23:18:45 2011 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk
Missing dependence added (?) and typo in test files fixed.
Revision
3577 -
Directory Listing
Modified
Mon Sep 5 08:22:52 2011 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk
getFLux fixed and tests added.
Revision
3576 -
Directory Listing
Modified
Mon Sep 5 06:33:20 2011 UTC
(10 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fixed two more instances of macro-dependent unused vars.
Revision
3575 -
Directory Listing
Modified
Fri Sep 2 08:31:08 2011 UTC
(10 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Fixing bug I introduced with the last commit
Revision
3574 -
Directory Listing
Modified
Fri Sep 2 07:19:31 2011 UTC
(10 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Added setValue to locator.
Some unit tests added but they aren't being triggered for some reason
Revision
3573 -
Directory Listing
Modified
Fri Sep 2 05:51:02 2011 UTC
(10 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Added more comprehensible doco about 3D interpolation.
Also fixed a bug but this may break code which previously used 3D interpolation.
This fixes mantis #581
Revision
3572 -
Directory Listing
Modified
Thu Sep 1 07:54:42 2011 UTC
(10 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Comment out a non-existant function from the Finley interface and (hopefully)
fix mantis bug #623
Revision
3571 -
Directory Listing
Modified
Thu Sep 1 03:53:23 2011 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk
LinearSolver option RILU has been removed from the documentation it is not supported yet.
Revision
3570 -
Directory Listing
Modified
Thu Sep 1 03:11:26 2011 UTC
(10 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Fixed some bib entries, changed visit script in guide to use " instead of '.
Reworded a sentence.
Revision
3569 -
Directory Listing
Modified
Thu Sep 1 02:42:36 2011 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk
Darcy flow solver and docu reviewed. Coupled solvers have been removed.
Revision
3568 -
Directory Listing
Modified
Tue Aug 30 08:23:24 2011 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk
darcy flux documentation updated.
Revision
3567 -
Directory Listing
Modified
Tue Aug 30 07:55:02 2011 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk
FIXME and TODO fixed.
Revision
3566 -
Directory Listing
Modified
Tue Aug 30 07:37:55 2011 UTC
(10 years, 8 months ago)
by
gross
Original Path:
trunk
small fix to units
Revision
3565 -
Directory Listing
Modified
Mon Aug 29 10:28:57 2011 UTC
(10 years, 8 months ago)
by
jfenwick
Original Path:
trunk
surely it will accept this one
Revision
3564 -
Directory Listing
Modified
Mon Aug 29 09:09:30 2011 UTC
(10 years, 9 months ago)
by
jfenwick
Original Path:
trunk
In case windows is case sensitive
Revision
3563 -
Directory Listing
Modified
Mon Aug 29 04:26:46 2011 UTC
(10 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Another try to fix the windows issue
Revision
3562 -
Directory Listing
Modified
Mon Aug 29 03:31:13 2011 UTC
(10 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Removed DLL export from non-exported methods
Revision
3561 -
Directory Listing
Modified
Mon Aug 29 02:51:05 2011 UTC
(10 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Attempt to fix windows problem
Revision
3560 -
Directory Listing
Modified
Mon Aug 29 01:10:42 2011 UTC
(10 years, 9 months ago)
by
gross
Original Path:
trunk
lf missing in buildvars print
Revision
3559 -
Directory Listing
Modified
Fri Aug 26 07:47:27 2011 UTC
(10 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Silence some warnings unused var warnings under gcc.
Revision
3558 -
Directory Listing
Modified
Fri Aug 26 06:09:02 2011 UTC
(10 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Merged changes from dirac.
Now the only way to add diracPoints is to use the constructor
Revision
3552 -
Directory Listing
Modified
Mon Aug 22 00:05:17 2011 UTC
(10 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Fixed icc problem
Revision
3551 -
Directory Listing
Modified
Fri Aug 19 03:53:41 2011 UTC
(10 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Changing unit test calls to use non deprecated forms (python2.7)
fixes bug #568
Revision
3550 -
Directory Listing
Modified
Fri Aug 19 01:51:35 2011 UTC
(10 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Switching from rand() to boost::random for non-VSL randoms
Revision
3549 -
Directory Listing
Modified
Tue Aug 9 06:40:06 2011 UTC
(10 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Fix for issue #617
A couple of extra tests to make sure it doesn't happen again
Revision
3548 -
Directory Listing
Modified
Tue Aug 9 04:00:27 2011 UTC
(10 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Fixing badger options
Revision
3547 -
Directory Listing
Modified
Tue Aug 2 04:24:09 2011 UTC
(10 years, 9 months ago)
by
lgao
Original Path:
trunk
Set "lapack" to "mkl" before the mantis bug 0000616 is solved.
Revision
3546 -
Directory Listing
Modified
Thu Jul 28 01:32:20 2011 UTC
(10 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Replaced 'and' with && since windows doesn't seem to understand it
Revision
3545 -
Directory Listing
Modified
Wed Jul 27 06:29:09 2011 UTC
(10 years, 10 months ago)
by
lgao
Original Path:
trunk
Turn off VSL for random data before the MKL library link line problem has been solved.
Revision
3544 -
Directory Listing
Modified
Wed Jul 27 06:19:10 2011 UTC
(10 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Temporary fix to get windows to compile
Revision
3543 -
Directory Listing
Modified
Fri Jul 22 06:58:03 2011 UTC
(10 years, 10 months ago)
by
gross
Original Path:
trunk
and the generator script
Revision
3542 -
Directory Listing
Modified
Fri Jul 22 06:57:41 2011 UTC
(10 years, 10 months ago)
by
gross
Original Path:
trunk
first attempts toward a multi grid solver
Revision
3541 -
Directory Listing
Modified
Fri Jul 22 03:21:06 2011 UTC
(10 years, 10 months ago)
by
trankine
Original Path:
trunk
migration to system maintained dependancies (not per build). will allow multi builders
Revision
3538 -
Directory Listing
Modified
Mon Jul 4 00:13:02 2011 UTC
(10 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Added paper with current dev team to the references section.
Revision
3529 -
Directory Listing
Modified
Thu May 26 00:36:10 2011 UTC
(11 years ago)
by
caltinay
Original Path:
trunk
Re-enable VisIt and Silo on savanna and use gcc-4.6 on shake75.
Revision
3527 -
Directory Listing
Modified
Tue May 24 06:59:20 2011 UTC
(11 years ago)
by
gross
Original Path:
trunk
modifications to the coal seam gas
Revision
3526 -
Directory Listing
Modified
Tue May 24 05:01:46 2011 UTC
(11 years ago)
by
gross
Original Path:
trunk
coal code uses nodal wells now
Revision
3525 -
Directory Listing
Modified
Tue May 24 04:04:58 2011 UTC
(11 years ago)
by
gross
Original Path:
trunk
and more typos fixed.
Revision
3523 -
Directory Listing
Modified
Tue May 24 02:03:37 2011 UTC
(11 years ago)
by
caltinay
Original Path:
trunk
Fixed declaration order (register const) for gcc-4.6
Revision
3522 -
Directory Listing
Modified
Tue May 24 00:57:58 2011 UTC
(11 years ago)
by
gross
Original Path:
trunk
(almost) full support for Point elements
Revision
3520 -
Directory Listing
Modified
Mon May 23 06:24:30 2011 UTC
(11 years ago)
by
gross
Original Path:
trunk
some fixes for to point interpolation
Revision
3519 -
Directory Listing
Modified
Mon May 23 05:55:47 2011 UTC
(11 years ago)
by
gross
Original Path:
trunk
compiler fixes
Revision
3515 -
Directory Listing
Modified
Thu May 19 08:20:57 2011 UTC
(11 years ago)
by
gross
Original Path:
trunk
some first work for DiracFunctions
Revision
3514 -
Directory Listing
Modified
Thu May 19 04:48:34 2011 UTC
(11 years ago)
by
caltinay
Original Path:
trunk
Fixed __truediv__ and added __rtruediv__ for new python division operator.
Revision
3513 -
Directory Listing
Modified
Thu May 19 04:45:19 2011 UTC
(11 years ago)
by
lgao
Original Path:
trunk
When "werror" is set to True, scons build will complains about compilation failure of some boost "multi-array" test case. This causes recently unit-tests failures. So I set "werror" back to False before someone who has the knowledge fixes the problem.
Revision
3511 -
Directory Listing
Modified
Tue May 17 23:56:13 2011 UTC
(11 years ago)
by
lgao
Original Path:
trunk
Fixed the scons build problem in case MPI is not in use (this
is the reason why unit tests failed to execute properly for the
past several days).
Revision
3510 -
Directory Listing
Modified
Fri May 13 06:09:49 2011 UTC
(11 years ago)
by
gross
Original Path:
trunk
some fixes for the compilation without BOOMERAMG
Revision
3508 -
Directory Listing
Modified
Fri May 13 04:15:29 2011 UTC
(11 years ago)
by
lgao
Original Path:
trunk
Add Boomer AMG as a new preconditioner
Can be used by .setPreconditioner(SolverOptions.BOOMERAMG)
and the following parallel coarsening method can be
used together with Boomer AMG preconditioner:
.setCoarsening(SolverOptions.CIJP_FIXED_RANDOM_COARSENING)
.setCoarsening(SolverOptions.CIJP_COARSENING)
.setCoarsening(SolverOptions.FALGOUT_COARSENING)
.setCoarsening(SolverOptions.PMIS_COARSENING)
.setCoarsening(SolverOptions.HMIS_COARSENING)
Note that Boomer AMG is only available when MPI is enabled.
Revision
3506 -
Directory Listing
Modified
Wed May 11 01:59:45 2011 UTC
(11 years ago)
by
jfenwick
Original Path:
trunk
Use VSL if MKLRANDOM is defined.
Use different seeds for different ranks/threads.
Use different seeds for successive calls with no seed given.
Revision
3505 -
Directory Listing
Modified
Fri Apr 29 07:09:45 2011 UTC
(11 years, 1 month ago)
by
jfenwick
Original Path:
trunk
arithmetic operations now return NotImplemented if they don't know what to do.
Fixes mantis issue #54
Revision
3504 -
Directory Listing
Modified
Thu Apr 28 12:55:05 2011 UTC
(11 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Move arithmetic ops into explicitly named methods
Revision
3503 -
Directory Listing
Modified
Thu Apr 28 06:55:30 2011 UTC
(11 years, 1 month ago)
by
gross
Original Path:
trunk
missing file
Revision
3502 -
Directory Listing
Modified
Thu Apr 28 05:06:24 2011 UTC
(11 years, 1 month ago)
by
gross
Original Path:
trunk
Darcy flow solver is now supporting 4 solvers
Revision
3500 -
Directory Listing
Modified
Mon Apr 11 03:09:06 2011 UTC
(11 years, 1 month ago)
by
gross
Original Path:
trunk
GMRES solver for new DarcyFlux solver added
Revision
3498 -
Directory Listing
Modified
Thu Apr 7 01:12:59 2011 UTC
(11 years, 1 month ago)
by
lgao
Original Path:
trunk
Two modifications to OpenMP versioned AMG:
(1) in RungeStueben Search:
* use a smaller panel to reduce the searching time for an unkown with
the largest lambda value;
* fix the mistakes made in this function (Two places where set S is
expected, not set S^T).
(2) while construct the coarse level matrix A_C:
A_C = P^T (A P) where A is the fine level matrix and P is the
interpolation operator. Since we've already had the tranpose of P
when we process "A_temp = A P", the performance of matrix product
can be improved when we use P^T for the calculation of A_temp.
Revision
3494 -
Directory Listing
Modified
Tue Apr 5 04:12:08 2011 UTC
(11 years, 1 month ago)
by
gross
Original Path:
trunk
more coal seam gas
Revision
3490 -
Directory Listing
Modified
Wed Mar 30 02:24:33 2011 UTC
(11 years, 2 months ago)
by
caltinay
Original Path:
trunk
More gcc-4.6 fixes (mostly initialized-but-unused-var warnings)
Revision
3489 -
Directory Listing
Modified
Wed Mar 30 00:46:04 2011 UTC
(11 years, 2 months ago)
by
caltinay
Original Path:
trunk
Fixed a few warnings emitted by gcc-4.6.
Revision
3487 -
Directory Listing
Modified
Mon Mar 28 03:44:22 2011 UTC
(11 years, 2 months ago)
by
gross
Original Path:
trunk
some compile fixes
Revision
3486 -
Directory Listing
Modified
Sun Mar 27 22:27:45 2011 UTC
(11 years, 2 months ago)
by
gross
Original Path:
trunk
bug in eigenvector calculation fixed (see mantis=594)
Revision
3485 -
Directory Listing
Modified
Thu Mar 24 22:44:40 2011 UTC
(11 years, 2 months ago)
by
gross
Original Path:
trunk
some compile fixes
Revision
3484 -
Directory Listing
Modified
Thu Mar 24 05:42:07 2011 UTC
(11 years, 2 months ago)
by
gross
Original Path:
trunk
some work on coal gas
Revision
3483 -
Directory Listing
Modified
Wed Mar 23 04:18:35 2011 UTC
(11 years, 2 months ago)
by
gross
Original Path:
trunk
Ops: AMG MPI chould not be called yet.
Revision
3482 -
Directory Listing
Modified
Wed Mar 23 04:06:52 2011 UTC
(11 years, 2 months ago)
by
gross
Original Path:
trunk
some work on AMG MPI
Revision
3478 -
Directory Listing
Modified
Wed Mar 23 04:02:39 2011 UTC
(11 years, 2 months ago)
by
gross
Original Path:
trunk
coal gas stuff
Revision
3475 -
Directory Listing
Modified
Thu Mar 17 00:28:08 2011 UTC
(11 years, 2 months ago)
by
caltinay
Original Path:
trunk
Removed an obsolete file.
Revision
3470 -
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Modified
Mon Mar 14 03:50:49 2011 UTC
(11 years, 2 months ago)
by
caltinay
Original Path:
trunk
Fix for mantis issue 591 (added __truediv__ methods to Data class).
Revision
3469 -
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Modified
Tue Feb 22 06:39:16 2011 UTC
(11 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Fix docstring in dudley
Revision
3468 -
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Modified
Tue Feb 22 06:38:57 2011 UTC
(11 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Made constructors more efficient.
Only has a very minor affect on performance
Revision
3467 -
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Modified
Tue Feb 8 09:31:46 2011 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk
Fixed unit test after last change.
Revision
3466 -
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Modified
Tue Feb 8 05:16:21 2011 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk
Added TEMP and friends to the list of env vars exported by scons.
Modified pycad's gmsh command line since the mesh filename may also contain
spaces.
Revision
3465 -
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Modified
Tue Feb 8 00:11:15 2011 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk
Use the subprocess module within pycad's Triangle.
Revision
3464 -
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Modified
Mon Feb 7 05:17:11 2011 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk
Use the subprocess module with argument list to run gmsh from pycad to avoid
having to deal with spaces in path names.
Revision
3463 -
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Modified
Mon Feb 7 02:09:57 2011 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk
Check for gmsh in main SConstruct file and skip tests that depend on it when
the executable is not found.
Revision
3462 -
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Modified
Mon Feb 7 02:01:50 2011 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk
Removed debug output.
Revision
3461 -
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Modified
Sun Feb 6 23:33:37 2011 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk
Re-enabled silo on savanna as well.
Revision
3460 -
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Modified
Sun Feb 6 23:24:22 2011 UTC
(11 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Re-enabling MPI on savanna
Revision
3459 -
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Modified
Wed Feb 2 01:54:45 2011 UTC
(11 years, 3 months ago)
by
caltinay
Original Path:
trunk
Patch from Terry to fix compilation on Windows with MKL enabled.
Revision
3458 -
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Modified
Mon Jan 31 07:06:42 2011 UTC
(11 years, 3 months ago)
by
gross
Original Path:
trunk
more on AMG under MPI
Revision
3457 -
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Modified
Thu Jan 27 01:38:17 2011 UTC
(11 years, 4 months ago)
by
caltinay
Original Path:
trunk
Added missing cookbook figures from Anthony.
Revision
3456 -
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Modified
Tue Jan 25 08:20:02 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
segfault fixed
Revision
3455 -
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Modified
Tue Jan 25 04:23:17 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
some compilation fixes
Revision
3454 -
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Modified
Tue Jan 25 04:00:29 2011 UTC
(11 years, 4 months ago)
by
caltinay
Original Path:
trunk
Fixed some minor doxygen issues.
Revision
3453 -
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Modified
Tue Jan 25 03:59:30 2011 UTC
(11 years, 4 months ago)
by
caltinay
Original Path:
trunk
Disabled C99 extensions on guineapig again.
Revision
3452 -
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Modified
Tue Jan 25 01:53:57 2011 UTC
(11 years, 4 months ago)
by
caltinay
Original Path:
trunk
Fixed building cookbook, including toc (scons scans for keywords in the tex
files but not in .cls as it seems).
Also fixed a few epydoc warnings and typos.
Revision
3451 -
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Modified
Sun Jan 23 23:11:01 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
compilation fixes
Revision
3450 -
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Modified
Fri Jan 21 06:39:56 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
more compilation fixing
Revision
3449 -
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Modified
Fri Jan 21 05:48:15 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
compile problem in AMG fixed.
Revision
3448 -
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Modified
Fri Jan 21 04:38:54 2011 UTC
(11 years, 4 months ago)
by
ahallam
Original Path:
trunk
Quick final changes to cookbook to accomodate example10c problem. 'So long and thanks for all the fish.'
Revision
3447 -
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Modified
Fri Jan 21 04:33:42 2011 UTC
(11 years, 4 months ago)
by
ahallam
Original Path:
trunk
example10c removed from testing as it is not in the cookbook.
Revision
3446 -
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Modified
Thu Jan 20 06:47:07 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
and more work toward AMG MPI
Revision
3445 -
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Modified
Wed Jan 19 06:02:15 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
more work towards MPI AMG
Revision
3444 -
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Modified
Tue Jan 18 23:17:27 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
run_domainreaders.py can only be run for MPI ranks = 1 as gmsh does not support MPI yet
Revision
3443 -
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Modified
Tue Jan 18 05:38:48 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
test for AMG fixed. New test set guarantees SPD stiffness matrix. Previously this was not guaranteed and could lead to singular coarse level matrices (which cause MKL based runs to fail)
Revision
3442 -
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Modified
Tue Jan 18 01:47:36 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
emeregncy
Revision
3441 -
Directory Listing
Modified
Fri Jan 14 01:09:09 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
clarifiaction of function names as a first step towards a MPI version of AMG
Revision
3440 -
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Modified
Fri Jan 14 00:04:53 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
a second AMG interpolation implemented
Revision
3439 -
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Modified
Fri Jan 14 00:04:01 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
some modifications to fix the cook examples runs for testing
Revision
3438 -
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Modified
Thu Jan 13 23:24:50 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
mesh size reduced
Revision
3437 -
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Modified
Mon Jan 10 05:05:15 2011 UTC
(11 years, 4 months ago)
by
plaub
Original Path:
trunk
Fixed test for new default arguments
Revision
3436 -
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Modified
Mon Jan 10 02:06:07 2011 UTC
(11 years, 4 months ago)
by
plaub
Original Path:
trunk
Added/modified AMG tests:
- "self.failUnless(...)" became "self.assertTrue(...)"
because fail* is soon to be deprecated,
- fixed logical error in self.assertTrue argument,
- added another test, 'testSquare'.
Added some print statements to AMG.c in verbose mode to
identify which of the stopping conditions were fulfilled.
Changed default AMG parameters for 'setNumPreSweeps' and
'setNumPostSweeps' to 1 (huge speed improvment).
P.S Beware of bugs in the above code; I have only proved
it correct, not tried it... Jokes!
Revision
3435 -
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Modified
Fri Jan 7 03:40:39 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
initial value changed
Revision
3434 -
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Modified
Fri Jan 7 03:35:58 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
initial value changed
Revision
3433 -
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Modified
Fri Jan 7 02:39:05 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
initial value changed
Revision
3432 -
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Modified
Fri Jan 7 01:32:07 2011 UTC
(11 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Made import statements a bit more specific to clean up the epydoc
Revision
3431 -
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Modified
Fri Jan 7 01:19:21 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
redundant setMinCoarseMatrixSparsity removed.
Revision
3430 -
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Modified
Thu Jan 6 09:09:19 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
import order is critical
Revision
3429 -
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Modified
Thu Jan 6 07:40:01 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
SAMESIGN macro added
Revision
3428 -
Directory Listing
Modified
Thu Jan 6 01:12:36 2011 UTC
(11 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Fixed errors (and space/tabs) in geometry.py
Added unit tests
Revision
3427 -
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Modified
Thu Jan 6 00:11:45 2011 UTC
(11 years, 4 months ago)
by
ahallam
Original Path:
trunk
Missing script.
Revision
3426 -
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Modified
Wed Jan 5 02:51:35 2011 UTC
(11 years, 4 months ago)
by
ahallam
Original Path:
trunk
Added new example tests.
Revision
3425 -
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Modified
Wed Jan 5 02:50:38 2011 UTC
(11 years, 4 months ago)
by
ahallam
Original Path:
trunk
Added new example tests.
Revision
3424 -
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Modified
Wed Jan 5 00:24:46 2011 UTC
(11 years, 4 months ago)
by
gross
Original Path:
trunk
memory leak in UMFPACK interface fixed
Revision
3423 -
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Modified
Thu Dec 16 04:24:13 2010 UTC
(11 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Fix a typo in geometry.py
Revision
3422 -
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Modified
Mon Dec 13 23:27:47 2010 UTC
(11 years, 5 months ago)
by
caltinay
Original Path:
trunk
Updated shake75 options file to use visit 2.2
Revision
3421 -
Directory Listing
Modified
Mon Dec 13 23:15:01 2010 UTC
(11 years, 5 months ago)
by
artak
Original Path:
trunk
semi-colon is missing
Revision
3417 -
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Modified
Sun Dec 12 23:40:27 2010 UTC
(11 years, 5 months ago)
by
artak
Original Path:
trunk
Treat warnings as errors is disabled.
Revision
3412 -
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Modified
Fri Dec 10 02:03:49 2010 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk
some fixes for MKL lapack
Revision
3411 -
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Modified
Thu Dec 9 22:42:02 2010 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk
some cleaning
Revision
3410 -
Directory Listing
Modified
Thu Dec 9 07:02:52 2010 UTC
(11 years, 5 months ago)
by
ahallam
Original Path:
trunk
Minor changes to cookbook, gravity example.
Revision
3409 -
Directory Listing
Modified
Thu Dec 9 07:01:23 2010 UTC
(11 years, 5 months ago)
by
ahallam
Original Path:
trunk
minor changes to examples before holiday.
Revision
3407 -
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Modified
Wed Dec 8 05:16:08 2010 UTC
(11 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Obsolete
Revision
3406 -
Directory Listing
Modified
Wed Dec 8 01:09:37 2010 UTC
(11 years, 5 months ago)
by
ahallam
Original Path:
trunk
Updates to cookbook documentation for release.
Revision
3405 -
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Modified
Wed Dec 8 01:09:06 2010 UTC
(11 years, 5 months ago)
by
ahallam
Original Path:
trunk
Changes to example09 for memory footprint. One change too help wording in layer_cake function. example09b removed from testing. Not for impending release.
Revision
3404 -
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Modified
Tue Dec 7 10:24:32 2010 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk
missing file
Revision
3403 -
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Modified
Tue Dec 7 08:13:51 2010 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk
some small fixes
Revision
3402 -
Directory Listing
Modified
Tue Dec 7 07:36:12 2010 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk
AMG support now block size > 3 (requires clapack or MKL).
additional diagnostics for AMG
Revision
3400 -
Directory Listing
Modified
Mon Dec 6 02:23:07 2010 UTC
(11 years, 5 months ago)
by
caltinay
Original Path:
trunk
Moved vtkCellType.h to weipa where it belongs now.
Revision
3399 -
Directory Listing
Modified
Mon Dec 6 02:02:16 2010 UTC
(11 years, 5 months ago)
by
caltinay
Original Path:
trunk
Updated VTK files to reflect changes to the writer.
Revision
3398 -
Directory Listing
Modified
Mon Dec 6 00:02:33 2010 UTC
(11 years, 5 months ago)
by
caltinay
Original Path:
trunk
Fixed the quad mask in a very specific case and changed saveVTK to write a
specific value for unused nodes instead of the first one which breaks unit
tests depending on the number of ranks used.
Still need to rebaseline some VTK files so the tests pass.
Revision
3397 -
Directory Listing
Modified
Sun Dec 5 22:46:25 2010 UTC
(11 years, 5 months ago)
by
caltinay
Original Path:
trunk
Fixed an issue in saveVTK/Silo.
Revision
3396 -
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Modified
Fri Dec 3 08:24:16 2010 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk
wrong pointer handed
Revision
3395 -
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Modified
Fri Dec 3 06:30:35 2010 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk
small correction
Revision
3394 -
Directory Listing
Modified
Fri Dec 3 06:07:08 2010 UTC
(11 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Nasty hack to dodge a linking issue for serial builds on savanna
Revision
3393 -
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Modified
Fri Dec 3 04:14:56 2010 UTC
(11 years, 5 months ago)
by
caltinay
Original Path:
trunk
shake24 (darwin) needs -L/usr/lib to pull correct gcc library.
The python library path was also not entirely correct - fixed.
Revision
3392 -
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Modified
Thu Dec 2 03:26:29 2010 UTC
(11 years, 5 months ago)
by
ahallam
Original Path:
trunk
Updates to cookbook. Includes new section on variable meshing. To be reviewed.
Revision
3391 -
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Modified
Thu Dec 2 02:25:53 2010 UTC
(11 years, 5 months ago)
by
gross
Original Path:
trunk
seg fault fixed.
Revision
3390 -
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Modified
Thu Dec 2 00:34:37 2010 UTC
(11 years, 5 months ago)
by
jfenwick
Original Path:
trunk
RandomData added
Revision
3389 -
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Modified
Wed Dec 1 23:03:35 2010 UTC
(11 years, 5 months ago)
by
ahallam
Original Path:
trunk
Some changes to the cookbook examples. Starting Inversion experimentation.
Revision
3388 -
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Modified
Mon Nov 29 06:07:07 2010 UTC
(11 years, 5 months ago)
by
caltinay
Original Path:
trunk
Added quotes around some variables to fix running scripts located in a
directory whose name contains spaces.
Revision
3387 -
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Modified
Thu Nov 25 07:09:23 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed some annoying typos.
Revision
3386 -
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Modified
Thu Nov 25 05:05:50 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
scons choked on the newlines within the parameter list. Fixed.
Revision
3385 -
Directory Listing
Modified
Thu Nov 25 04:41:33 2010 UTC
(11 years, 6 months ago)
by
ahallam
Original Path:
trunk
Updates to cookbook, something is wrong with the sconstruct though
Revision
3384 -
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Modified
Thu Nov 25 03:28:01 2010 UTC
(11 years, 6 months ago)
by
ahallam
Original Path:
trunk
Cookbook lumping updates.
Revision
3383 -
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Modified
Thu Nov 25 02:17:51 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed some typos and added missing symlinks.
Revision
3382 -
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Modified
Thu Nov 25 00:43:18 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
I've added better credits for dev team.
There is a new page just before the contents page with current dev team
and a more detailed list in the user guide appendix.
Please check this and let me know if you think there are errors or
omissions.
Also fixed a typo.
Removed reference to python style files we no longer use from the
license file.
Revision
3381 -
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Modified
Wed Nov 24 23:37:55 2010 UTC
(11 years, 6 months ago)
by
ahallam
Original Path:
trunk
Proofing of lumping.tex
Revision
3380 -
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Modified
Wed Nov 24 05:03:25 2010 UTC
(11 years, 6 months ago)
by
gross
Original Path:
trunk
update to change list
Revision
3379 -
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Modified
Wed Nov 24 04:48:49 2010 UTC
(11 years, 6 months ago)
by
gross
Original Path:
trunk
some clarification on lumping
Revision
3378 -
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Modified
Tue Nov 23 05:09:25 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Pass dictionary of data objects to EscriptDataset as kwargs in DataManager.
Revision
3377 -
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Modified
Tue Nov 23 02:01:20 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Removed empty esys, include and lib directories since the install prefix is
variable now. Don't shoot me for this if this hurts.
Revision
3376 -
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Modified
Tue Nov 23 01:56:20 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Invoke run-escript instead of escript in runTest.
Revision
3375 -
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Modified
Tue Nov 23 00:37:23 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fix to unit tests
Revision
3374 -
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Modified
Tue Nov 23 00:30:20 2010 UTC
(11 years, 6 months ago)
by
ahallam
Original Path:
trunk
Fixes to example scripts.
Revision
3373 -
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Modified
Tue Nov 23 00:29:07 2010 UTC
(11 years, 6 months ago)
by
ahallam
Original Path:
trunk
New figures.
Revision
3372 -
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Modified
Mon Nov 22 23:10:03 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Added missing import to fix unit test
Revision
3371 -
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Modified
Mon Nov 22 06:13:47 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Sort data objects by name before passing them to the EscriptDataset object.
This addresses #537.
Revision
3370 -
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Modified
Sun Nov 21 23:22:25 2010 UTC
(11 years, 6 months ago)
by
ahallam
Original Path:
trunk
Rearranged figures for release.
Revision
3369 -
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Modified
Fri Nov 19 06:26:11 2010 UTC
(11 years, 6 months ago)
by
gross
Original Path:
trunk
matrix balance introduced in paso
Revision
3368 -
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Modified
Fri Nov 19 05:59:46 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
3d interpolateTable support.
New more generic interface for table interpolation.
tests and doco updated
Revision
3367 -
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Modified
Fri Nov 19 02:07:25 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
added quick intro to visualization with VisIt and fixed a file reference.
Revision
3366 -
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Modified
Thu Nov 18 23:41:42 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
esys.weipa Python interface documentation.
Revision
3365 -
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Modified
Thu Nov 18 10:49:40 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed compilation without VisIt.
Revision
3364 -
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Modified
Thu Nov 18 05:51:44 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Expose visitInitialize and visitPublishData through the python interface.
Revision
3363 -
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Modified
Thu Nov 18 05:49:45 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Catch some corner cases in weipa's VisIt controller to make it more foolproof
and allow reinitialization.
Revision
3362 -
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Modified
Thu Nov 18 04:59:44 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Made the VisIt interface less verbose in non-debug mode and removed unused
includes.
Revision
3361 -
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Modified
Thu Nov 18 01:56:36 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Minor enhancement.
Revision
3360 -
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Modified
Thu Nov 18 00:20:21 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fix some epydoc errors
Fixed issue 564
removed minimize.py since it hasn't worked in who knows how long
Revision
3359 -
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Modified
Wed Nov 17 23:32:36 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixing problem with ./utest.sh including full build path
Revision
3358 -
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Modified
Wed Nov 17 08:02:32 2010 UTC
(11 years, 6 months ago)
by
gross
Original Path:
trunk
a more flexiblae version of safeDiv
Revision
3357 -
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Modified
Wed Nov 17 06:21:37 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed a crash when loading data from netCDF files.
Revision
3356 -
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Modified
Wed Nov 17 05:27:47 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Finley type Finley_Tri3Face_Contact is no longer untested within weipa.
Revision
3355 -
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Modified
Tue Nov 16 06:35:06 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed building with boost < 1.40 by
- removing the saveVTK method from dudley's MeshAdapter completely
(no point introducing it now when we are trying to get rid of it soon)
- adding a helper function to weipa's python layer which can be called from C++
with older boost versions.
Revision
3354 -
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Modified
Tue Nov 16 04:48:09 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fix problem with superclass init
Revision
3353 -
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Modified
Tue Nov 16 04:32:40 2010 UTC
(11 years, 6 months ago)
by
gross
Original Path:
trunk
some clarification on AMG in the documentation
Revision
3352 -
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Modified
Tue Nov 16 03:58:09 2010 UTC
(11 years, 6 months ago)
by
gross
Original Path:
trunk
exposure of AMG options
Revision
3351 -
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Modified
Tue Nov 16 02:39:40 2010 UTC
(11 years, 6 months ago)
by
gross
Original Path:
trunk
modified approach for AMG coarsning using a panel
Revision
3350 -
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Modified
Mon Nov 15 05:14:43 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed MSVC90 file as per Gordon's report.
Revision
3349 -
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Modified
Mon Nov 15 05:09:56 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
escript now supports out-of-tree builds.
All build and test files are now created under a user-definable build_dir
directory.
This also fixes issue 291.
Removed most svn:ignore props since they are no longer required.
Revision
3348 -
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Modified
Fri Nov 12 05:55:50 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Added weipa import statements to the relevant parts in user guide and cookbook.
Documented the deprecation of esys.escript.saveVTK in the changes chapter.
Revision
3347 -
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Modified
Fri Nov 12 04:58:27 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
-Do not compare mesh variables (like owner, color etc) in the saveVTK tests
since they depend on the number of ranks.
-Fixed a problem where ranks without data samples can't know whether a
reduced mesh is to be used or not.
Revision
3346 -
Directory Listing
Modified
Fri Nov 12 01:19:02 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Replaced usage of esys.escript.util.saveVTK by weipa.saveVTK in all python
scripts.
Revision
3345 -
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Modified
Thu Nov 11 23:51:45 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Moved dudley saveVTK tests to weipa and removed unneeded files.
Revision
3344 -
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Modified
Thu Nov 11 23:26:52 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Phew!
-escript, finley, and dudley now uses weipa's saveVTK implementation
-moved tests from finley to weipa accordingly; dudley still to do
-rebaselined all test files
-fixed a few issues in weipa.saveVTK, e.g. saving metadata without schema
-added a deprecation warning to esys.escript.util.saveVTK
-todo: change doco, tests and other places to use weipa.saveVTK
Revision
3343 -
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Modified
Wed Nov 10 02:01:29 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Rename users guide to user.pdf from guide.pdf to match the conventions
we follow with the other files.
Corrected the description of Einstein convention from "convenient"
to "compact".
Revision
3342 -
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Modified
Tue Nov 9 03:41:58 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed interpolation for Line3Macro elements in weipa.
Revision
3341 -
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Modified
Mon Nov 8 21:34:01 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Renamed MS options file.
Revision
3340 -
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Modified
Mon Nov 8 01:25:58 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Relax python version check.
Only checks X.Y not X.Y.Z
Fixes mantis #556
Revision
3339 -
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Modified
Fri Nov 5 05:30:31 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed more package clashing problems.
Package install.pdf not install.tex
Changed title on most documents to esys-Escript except for the cookbook coz I like ti that way.
Revision
3338 -
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Modified
Fri Nov 5 03:50:51 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Remove old name for man page to prevent clash with erlang.
Changed default library to link for boost to boost_python-mt
Revision
3337 -
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Modified
Fri Nov 5 03:20:19 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Work around weird scons behaviour
Revision
3336 -
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Modified
Fri Nov 5 00:28:44 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed bib entry
Revision
3335 -
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Modified
Wed Nov 3 05:02:57 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fix the launcher so that it can give an environment even if buildvars is not present.
Environment now includes scons for standalone builds.
Fixes and cleanup for the install documentation.
scons TEMPLATES updated to define the optionfile version by default.
...mumble
finley no longer imports escript into the default namespace
...
Revision
3334 -
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Modified
Wed Nov 3 00:46:56 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Added 3.2 to changes page
Revision
3333 -
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Modified
Mon Nov 1 06:08:05 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Updated lapack paths on guineapig.
Revision
3332 -
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Modified
Mon Nov 1 05:26:55 2010 UTC
(11 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Copy run-escript over for a prefix install.
Fixes mantis issue: 551
Revision
3331 -
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Modified
Mon Nov 1 05:21:18 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Appendix done. Fixed some overfull hboxes.
Revision
3330 -
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Modified
Mon Nov 1 04:29:09 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
trunk
Finished user's guide chapters up to Appendix.
Revision
3329 -
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Modified
Fri Oct 29 05:55:55 2010 UTC
(11 years, 6 months ago)
by
caltinay
Original Path:
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Faultsystems2d. not finished yet.
Revision
3328 -
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Modified
Fri Oct 29 02:21:42 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Fixed script filename
Revision
3327 -
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Modified
Fri Oct 29 02:08:37 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
missing omp function added.
Revision
3326 -
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Modified
Fri Oct 29 00:45:32 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
6.2 Darcy Flux. Note that I commented the gravity flow subsection since it's
not written.
Revision
3325 -
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Modified
Fri Oct 29 00:30:51 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
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Section 6.1.
Revision
3324 -
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Modified
Thu Oct 28 23:43:09 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Finished pycad chapter 5, regenerated eps files
Revision
3323 -
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Modified
Thu Oct 28 09:53:46 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
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some openmp fizes.
Revision
3322 -
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Modified
Thu Oct 28 05:26:37 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Adapt install guide to new style.
Simplify package building scripts to autodetect necessary info and build control file automatically.
Revision
3321 -
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Modified
Thu Oct 28 05:02:41 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
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a problem with surface orientation fixed.
Revision
3320 -
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Modified
Thu Oct 28 03:29:51 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
This fixes the scons warning about not finding the Intel top dir on Savanna.
Revision
3319 -
Directory Listing
Modified
Thu Oct 28 03:14:27 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
export PATH to scons when creating environment so tools in non-default
locations such as latex on savanna are found.
Revision
3318 -
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Modified
Thu Oct 28 01:05:36 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
This should fix building paso without OpenMP.
Revision
3317 -
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Modified
Thu Oct 28 00:50:41 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Removed bogus mpi.h includes, replaced others by our esysUtils wrapper
and rearranged so that the wrapper always comes before netcdf which fixes
linking problems when disabling mpi on systems with netCDF 4.x.
Revision
3316 -
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Modified
Wed Oct 27 01:43:21 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Finished Chapter 4, added missing bibliography entries for Trilinos and SuperLU
Revision
3315 -
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Modified
Wed Oct 27 01:20:27 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
bug in sparse matrixmatrix fixed.
Revision
3314 -
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Modified
Tue Oct 26 22:22:20 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
output removed/leaned up
Revision
3313 -
Directory Listing
Modified
Tue Oct 26 22:00:09 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
some print statements removed
Revision
3312 -
Directory Listing
Modified
Tue Oct 26 07:54:58 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
last step for a clean up version of the AMG
Revision
3311 -
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Modified
Tue Oct 26 05:43:25 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Added raggedbottom to last page before appendix.
Condensed the latex picture figures a bit
Revision
3310 -
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Modified
Tue Oct 26 03:58:17 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Fixed some pdf bookmarks and added the index package
Revision
3309 -
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Modified
Tue Oct 26 03:56:26 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Updated escript section with added DataManager reference.
Revision
3308 -
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Modified
Tue Oct 26 03:24:54 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Moved listing and class up a level.
Removed hackscore from cookbook.
Made cookbook use the new stuff - removed old stuff
Revision
3307 -
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Modified
Tue Oct 26 01:19:19 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Put index back in and added link to index and biblio to the TOC.
Revision
3306 -
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Modified
Mon Oct 25 05:09:13 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Commented declaremodule and modulesynopsis.
Revision
3305 -
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Modified
Mon Oct 25 05:04:22 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Fancy shuffling
Revision
3304 -
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Modified
Mon Oct 25 04:43:48 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Disabled building html user's guide - it doesn't read the class file properly
and the PDF now supports links.
Revision
3303 -
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Modified
Mon Oct 25 04:33:31 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
more clean up work on the AMG
Revision
3302 -
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Modified
Mon Oct 25 01:50:07 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Fixed appendix so hyperref generates links properly
Revision
3301 -
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Modified
Mon Oct 25 01:27:54 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Modified layout of descriptions.
Fixed some overfull hboxes
Revision
3300 -
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Modified
Mon Oct 25 00:22:14 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Some text fixes
Revision
3299 -
Directory Listing
Modified
Sun Oct 24 23:44:18 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
some fixes
Revision
3297 -
Directory Listing
Modified
Fri Oct 22 05:47:37 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
small fix
Revision
3296 -
Directory Listing
Modified
Fri Oct 22 02:53:24 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
hackscore removal.
Revision
3294 -
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Modified
Fri Oct 22 01:15:56 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Tweaks
Revision
3293 -
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Modified
Thu Oct 21 23:18:32 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
user's guide builds again with new class file. The cleanup can commence...
Revision
3292 -
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Modified
Thu Oct 21 05:02:49 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Adding the class file
Revision
3291 -
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Modified
Thu Oct 21 00:37:42 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Work on user's guide up to section 3.2 (exclusive), including some text on
new DataManager class.
Also reworked a couple of images.
This should be the last commit of the guide before changes to the latex class.
Revision
3290 -
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Modified
Wed Oct 20 08:31:56 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
small fixes
Revision
3289 -
Directory Listing
Modified
Wed Oct 20 07:07:11 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
missing factor fixed.
Revision
3288 -
Directory Listing
Modified
Tue Oct 19 01:08:31 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Corrections to user guide sections 1.5 and 1.6.
Converted backgrounds of the very complex stokes flow eps files by raster
images leaving the vectors untouched so the change is barely visible but
makes loading the PDF page some orders of magnitude faster.
Revision
3287 -
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Modified
Tue Oct 19 00:42:22 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
complaint from valgrind about an uninitialized value fixed (no impact on result)
Revision
3286 -
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Modified
Tue Oct 19 00:36:27 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
small memory leak fixed.
Revision
3285 -
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Modified
Tue Oct 19 00:28:00 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
bug in initialization step fixed.
Revision
3284 -
Directory Listing
Modified
Mon Oct 18 23:48:04 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
old AMLI code collected in a single file. It does not compile and should be merged with RecILU
Revision
3283 -
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Modified
Mon Oct 18 22:39:28 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
AMG reengineered, BUG is Smoother fixed.
Revision
3282 -
Directory Listing
Modified
Fri Oct 15 06:59:32 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Don't build guide_pdf when only guide_html was requested.
Revision
3281 -
Directory Listing
Modified
Fri Oct 15 06:52:34 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
latex2html doesn't like './' in graphicspath, so removed it.
Revision
3280 -
Directory Listing
Modified
Fri Oct 15 05:11:11 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Corrections to 1.4 of the user's guide.
Revision
3279 -
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Modified
Fri Oct 15 04:02:06 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Some corrections to 1.3 of user's guide and defined graphicspath globally.
Revision
3278 -
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Modified
Fri Oct 15 02:00:45 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Updated section 1.2 of user's guide.
Revision
3277 -
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Modified
Fri Oct 15 01:06:24 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
This should keep scons happy on systems without pdflatex issuing a warning
to the user. Also updated all other doc sconscript files to use a global
release_dir prefix so we can easily move the files somewhere else if req'd.
Revision
3276 -
Directory Listing
Modified
Thu Oct 14 21:38:05 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
new damage solver
Revision
3275 -
Directory Listing
Modified
Thu Oct 14 06:15:27 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
As it turns out the tangential operator implementation is not a good idea.
This a check in to save the last version of this approach before starting using a different method.
Revision
3274 -
Directory Listing
Modified
Thu Oct 14 06:14:30 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Some initial corrections to the user's guide.
Revision
3273 -
Directory Listing
Modified
Thu Oct 14 05:44:08 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Fixed guide_html dependencies so the pages are really rebuilt when source
files change.
Revision
3272 -
Directory Listing
Modified
Thu Oct 14 04:02:06 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Similar to last commit but for cookbook. Can't test since cookbook doesn't
build at the moment.
Revision
3271 -
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Modified
Thu Oct 14 02:16:00 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
-use existing scons pdflatex target for user's guide
-create temporary files in build directory rather than source directory
-make latex less verbose if verbosity option is off
This fixes #291 for user's guide.
Revision
3270 -
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Modified
Thu Oct 14 00:30:11 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
added -dEPSCrop option to ps2pdf so graphics are cropped as expected.
Revision
3269 -
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Modified
Wed Oct 13 03:21:50 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Fixed some intel compiler warnings.
Put linearPDEs back the way it was and present a common interface for dudley and finley (as per Lutz)
Revision
3268 -
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Modified
Wed Oct 13 02:16:23 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Do not ignore unknown options since the warnings are not easily visible,
bail out instead.
Revision
3267 -
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Modified
Wed Oct 13 02:12:06 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Renamed restarts.py to datamanager.py, added a method to explicitly set the
domain without adding data. Calling export() without domain/data will now
output a warning. Some additional cleanup.
Revision
3266 -
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Modified
Wed Oct 13 00:32:46 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Disable MPI on shake24 due to conflicting installations in default locations.
Revision
3265 -
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Modified
Tue Oct 12 04:42:03 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Updated relevant sections in install guide to reflect scons option changes.
Standalone section needs to be updated before the release.
Revision
3264 -
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Modified
Tue Oct 12 04:40:06 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Minor changes to avoid optimiser bug in intel-10
Revision
3263 -
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Modified
Tue Oct 12 01:16:21 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Updated convection script to use escript DataManager.
Revision
3262 -
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Modified
Mon Oct 11 07:19:40 2010 UTC
(11 years, 7 months ago)
by
gross
Original Path:
trunk
header file include added
Revision
3261 -
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Modified
Mon Oct 11 04:25:42 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Disable some unit tests for dudley until I can fix MPI failures
Revision
3260 -
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Modified
Mon Oct 11 03:41:35 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Removing dead files
Revision
3259 -
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Modified
Mon Oct 11 01:48:14 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Merging dudley and scons updates from branches
Revision
3250 -
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Modified
Thu Oct 7 01:49:18 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
Fixed a declaration/definition mismatch.
Revision
3245 -
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Modified
Tue Oct 5 23:17:56 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Removing out of date scripts
Revision
3233 -
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Modified
Mon Oct 4 00:54:26 2010 UTC
(11 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Fixed build error
Revision
3232 -
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Modified
Fri Oct 1 02:08:38 2010 UTC
(11 years, 7 months ago)
by
ahallam
Original Path:
trunk
Updates to cookbook, new chapter DC Resis and IP. Using new packages hyperref, natbib
Revision
3222 -
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Modified
Wed Sep 29 03:55:44 2010 UTC
(11 years, 7 months ago)
by
caltinay
Original Path:
trunk
This should make windoze happy.
Revision
3209 -
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Modified
Mon Sep 27 01:54:46 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Added missing libraries to escriptconvert.
Revision
3208 -
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Modified
Sun Sep 26 23:31:17 2010 UTC
(11 years, 8 months ago)
by
jfenwick
Original Path:
trunk
List tests as not working with MPI
Revision
3201 -
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Modified
Thu Sep 23 06:54:18 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
bug in meanValue fixed.
Revision
3200 -
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Modified
Thu Sep 23 06:53:36 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
more damage
Revision
3195 -
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Modified
Wed Sep 22 00:28:04 2010 UTC
(11 years, 8 months ago)
by
ahallam
Original Path:
trunk
Shortened runtime of cookbook examples to aid testing.
Revision
3194 -
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Modified
Tue Sep 21 09:14:56 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
missing files
Revision
3193 -
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Modified
Tue Sep 21 06:56:44 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
more clean up in AMG
Revision
3192 -
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Modified
Fri Sep 17 04:02:57 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
- weipa's saveVTK will now save multiple files if the data objects to write are
not on the same mesh.
- the save* methods now also add the appropriate file extension if not already
supplied
Revision
3191 -
Directory Listing
Modified
Fri Sep 17 00:44:20 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Use consistent naming for domain, mesh and 'chunks'
Revision
3190 -
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Modified
Thu Sep 16 23:29:09 2010 UTC
(11 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Disable some cookbook examples until we can get issues sorted out
Revision
3188 -
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Modified
Thu Sep 16 04:36:38 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fixed deletion of old restart directories with a checkpoint freq>1.
Revision
3186 -
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Modified
Thu Sep 16 01:23:53 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Added checkpoint frequency setting to DataManager so that visualisation files
can be created independent of restart files. Also removed the overhead of
creating an EscriptDataset instance for the restart-only case.
Revision
3185 -
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Modified
Thu Sep 16 00:30:09 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Weipa now supports initialization from DataConstant instances.
Revision
3183 -
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Modified
Tue Sep 14 23:09:59 2010 UTC
(11 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Adding timing information to unit tests.
Revision
3182 -
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Modified
Tue Sep 14 06:05:55 2010 UTC
(11 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Temporarily removing example8c from unit testing.
It seems to lock the test - or it runs for rediculous timeframes.
Revision
3181 -
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Modified
Tue Sep 14 05:01:00 2010 UTC
(11 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Fix to buggy recovery of colouring information.
Unfortunately unable to fix buggy spelling of colour.
Revision
3180 -
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Modified
Tue Sep 14 03:39:55 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
some fixes for the case that no direc solver is available.
Revision
3179 -
Directory Listing
Modified
Tue Sep 14 01:55:24 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
typo fixed
Revision
3178 -
Directory Listing
Modified
Tue Sep 14 00:31:59 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Corrected check for python version in launcher, added a function get_buildvar
for convenience.
Revision
3177 -
Directory Listing
Modified
Mon Sep 13 10:30:24 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
running vresion
Revision
3176 -
Directory Listing
Modified
Sat Sep 11 01:09:54 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Maybe this will finally make the Mac happy.
Revision
3175 -
Directory Listing
Modified
Fri Sep 10 09:03:38 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
intial checkin
Revision
3174 -
Directory Listing
Modified
Fri Sep 10 03:55:18 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Enabled debian's lapack on shake75.
Revision
3168 -
Directory Listing
Modified
Wed Sep 8 23:01:25 2010 UTC
(11 years, 8 months ago)
by
ahallam
Original Path:
trunk
Missing *.png
Revision
3167 -
Directory Listing
Modified
Wed Sep 8 03:24:29 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Only run pyvisi tests if VTK was enabled at configuration time.
Revision
3166 -
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Modified
Tue Sep 7 23:47:06 2010 UTC
(11 years, 8 months ago)
by
ahallam
Original Path:
trunk
Fix doc build error. I will add the figure when I come in tomorrow and turn Darra on.
Revision
3165 -
Directory Listing
Modified
Tue Sep 7 09:15:16 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Next attempt at fixing mac test failure.
Revision
3164 -
Directory Listing
Modified
Tue Sep 7 09:10:09 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Do not use VTK on guineapig - pyvisi is deprecated anyway.
Revision
3162 -
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Modified
Tue Sep 7 05:29:32 2010 UTC
(11 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Changes to match packages in the debian repo.
Also got rid of lib/pyversion
Revision
3160 -
Directory Listing
Modified
Mon Sep 6 09:17:28 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
bug fixed in RILU and test modified.
Revision
3159 -
Directory Listing
Modified
Mon Sep 6 06:59:31 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
AMG is using now a simpler interface to the Smoothers.
Revision
3158 -
Directory Listing
Modified
Mon Sep 6 06:09:11 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
GS and Jacobi are now used through the same interface.
Revision
3154 -
Directory Listing
Modified
Sun Sep 5 22:49:51 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Possible fix for mac linker error.
Revision
3153 -
Directory Listing
Modified
Sun Sep 5 01:31:49 2010 UTC
(11 years, 8 months ago)
by
ahallam
Original Path:
trunk
Updates to cookbook. Fixes to SWP and new Gravitational Potential
Revision
3151 -
Directory Listing
Modified
Fri Sep 3 05:46:12 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
More weipa tests including saveVTK.
Revision
3150 -
Directory Listing
Modified
Fri Sep 3 05:40:27 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Removed executable prop from non-executables.
Revision
3148 -
Directory Listing
Modified
Fri Sep 3 02:09:47 2010 UTC
(11 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Another attempt to patch the X issue
Revision
3147 -
Directory Listing
Modified
Fri Sep 3 02:03:05 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Don't clear domain on error. Moved adding Metadata-tags to the C++ level.
Revision
3146 -
Directory Listing
Modified
Fri Sep 3 01:29:21 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Properly initialise data centering variable.
Revision
3143 -
Directory Listing
Modified
Fri Sep 3 00:31:55 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
-Moved finley specifics into weipa subclasses
-EscriptDataset is now the only weipa class exported in Windows
-Some weipa code cleanup
Revision
3142 -
Directory Listing
Modified
Thu Sep 2 23:58:47 2010 UTC
(11 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Trying to fix X problem
Revision
3140 -
Directory Listing
Modified
Thu Sep 2 07:26:43 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
a more robust version of MINRES (really?)
Revision
3139 -
Directory Listing
Modified
Thu Sep 2 06:37:43 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fixed a typo.
Revision
3135 -
Directory Listing
Modified
Thu Sep 2 03:28:39 2010 UTC
(11 years, 8 months ago)
by
ahallam
Original Path:
trunk
Updates to cookbook scripts. Gravitation Examples.
Revision
3133 -
Directory Listing
Modified
Thu Sep 2 02:04:29 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Added methods to set mesh labels and units to DataManager.
Revision
3132 -
Directory Listing
Modified
Thu Sep 2 01:48:31 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Removed unused variable.
Revision
3131 -
Directory Listing
Modified
Thu Sep 2 01:40:47 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
DataManager now uses Python magic to figure out how to load the domain without
hardcoding anything finley-specific.
Revision
3129 -
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Modified
Wed Sep 1 07:58:23 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Fixed unit test.
Revision
3128 -
Directory Listing
Modified
Wed Sep 1 03:54:09 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
-Added mesh axis label/unit and variable unit support to weipa's Silo writer
-Created EscriptDataset python wrapper
-Some code cleanup and a ghost zone fix for the VisIt interface
Revision
3125 -
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Modified
Tue Aug 31 05:37:30 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
more code cleaning
Revision
3121 -
Directory Listing
Modified
Mon Aug 30 23:12:58 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
missing file
Revision
3120 -
Directory Listing
Modified
Mon Aug 30 10:48:00 2010 UTC
(11 years, 8 months ago)
by
gross
Original Path:
trunk
first iteration on Paso code clean up
Revision
3116 -
Directory Listing
Modified
Mon Aug 30 00:54:52 2010 UTC
(11 years, 8 months ago)
by
caltinay
Original Path:
trunk
Prepared weipa to use Silo's HDF5 driver & compression which performs better
than the default PDB. Code is disabled though because NetCDF 4 is currently
interfering (Unidata has been contacted). Added a note about this.
Revision
3113 -
Directory Listing
Modified
Fri Aug 27 04:04:56 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
Fixed commit from rev.2867 which broke the ability to specify script parameters.
Revision
3112 -
Directory Listing
Modified
Thu Aug 26 07:10:36 2010 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk
missing include added.
Revision
3111 -
Directory Listing
Modified
Thu Aug 26 06:49:42 2010 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk
some diagnostics for time step backtracing added
Revision
3110 -
Directory Listing
Modified
Thu Aug 26 05:42:18 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
Fixed a typo.
Revision
3109 -
Directory Listing
Modified
Thu Aug 26 04:33:18 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
Added accessor for the simulation cycle and log which directory was used to
restart.
Revision
3108 -
Directory Listing
Modified
Thu Aug 26 03:43:05 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
More weipa tests.
Revision
3107 -
Directory Listing
Modified
Thu Aug 26 03:41:28 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
Removed ugly #defines in favour of a class.
Revision
3106 -
Directory Listing
Modified
Wed Aug 25 08:15:38 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
Fixed export when 'work_dir' is set to sth other than the current dir.
Revision
3105 -
Directory Listing
Modified
Wed Aug 25 04:37:52 2010 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk
bug fixed in the Gauss Seidel
Revision
3104 -
Directory Listing
Modified
Wed Aug 25 00:53:25 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
Set up initial test suite files for weipa and some basic preliminary tests.
Revision
3103 -
Directory Listing
Modified
Tue Aug 24 07:01:33 2010 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk
test fix
Revision
3102 -
Directory Listing
Modified
Tue Aug 24 06:14:21 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
Inject the DataManager class to the escript namespace.
Revision
3101 -
Directory Listing
Modified
Tue Aug 24 06:08:12 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
weipa's saveVTK now stores metadata schema & string as expected.
Revision
3100 -
Directory Listing
Modified
Mon Aug 23 09:31:09 2010 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk
bug in ILU0 fixed.
Revision
3099 -
Directory Listing
Modified
Sun Aug 22 04:35:15 2010 UTC
(11 years, 9 months ago)
by
ahallam
Original Path:
trunk
Gravitational Potential Example- Needs some tuning.
Revision
3098 -
Directory Listing
Modified
Fri Aug 20 08:08:27 2010 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk
fix to the GaussSeidel
Revision
3097 -
Directory Listing
Modified
Fri Aug 20 04:59:12 2010 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk
some modifications to the GaussSeidel
Revision
3096 -
Directory Listing
Modified
Thu Aug 19 01:40:52 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
-New VisIt simulation control interface in weipa (uses VisIt's simv2)
-Rewrote restarts.py to be a more generic data manager for restarts and exports
-Removed weipa python file since the functionality is now handled by restarts.py
Revision
3095 -
Directory Listing
Modified
Tue Aug 17 03:42:31 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
Fixed building libescriptreader for the VisIt plugin.
Revision
3094 -
Directory Listing
Modified
Fri Aug 13 08:38:06 2010 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk
The MPI and sequational GAUSS_SEIDEL have been merged.
The couring and main diagonal pointer is now manged by the patternm which means that they are calculated once only even if the preconditioner is deleted.
Revision
3093 -
Directory Listing
Modified
Fri Aug 13 08:07:45 2010 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk
problem with no MPI compilation fixed
Revision
3092 -
Directory Listing
Modified
Fri Aug 13 07:55:03 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
Added getDataFlat() which will be used by the VisIt simulation interface
Revision
3091 -
Directory Listing
Modified
Fri Aug 13 07:47:57 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
-fixed cleanup on error when invoking escriptconvert in parallel
-fixed saving VTK files on one rank if data was loaded in chunks
-cleaned up EscriptDataset and split a couple of methods
Revision
3089 -
Directory Listing
Modified
Mon Aug 9 07:20:58 2010 UTC
(11 years, 9 months ago)
by
ahallam
Original Path:
trunk
Updates to example scripts - should now be working except for example09b.py which needs more memory.
Revision
3084 -
Directory Listing
Modified
Wed Aug 4 03:26:50 2010 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk
small bug fixed.
Revision
3083 -
Directory Listing
Modified
Tue Aug 3 06:34:35 2010 UTC
(11 years, 9 months ago)
by
caltinay
Original Path:
trunk
Updated some svn:ignore props.
Revision
3081 -
Directory Listing
Modified
Tue Aug 3 05:36:42 2010 UTC
(11 years, 9 months ago)
by
gross
Original Path:
trunk
a light restart manager added.
Revision
3078 -
Directory Listing
Modified
Tue Aug 3 03:12:16 2010 UTC
(11 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Switched the build_dir keyword param to variant_dir.
Should fix issue 525.
Revision
3077 -
Directory Listing
Modified
Mon Aug 2 23:01:14 2010 UTC
(11 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Fix my error
Revision
3076 -
Directory Listing
Modified
Mon Aug 2 05:21:40 2010 UTC
(11 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Removing hardcoded savanna from the SConstruct file.
Revision
3075 -
Directory Listing
Modified
Wed Jul 28 02:51:20 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
Updates to cookbook example. Lumping turned off for order 2 models until bug resolves.
Revision
3074 -
Directory Listing
Modified
Tue Jul 27 01:47:45 2010 UTC
(11 years, 10 months ago)
by
gross
Original Path:
trunk
tolerance for PCG relaxed.
Revision
3073 -
Directory Listing
Modified
Mon Jul 26 06:10:50 2010 UTC
(11 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Rename files to fix build problem
Revision
3072 -
Directory Listing
Modified
Fri Jul 23 07:10:03 2010 UTC
(11 years, 10 months ago)
by
gross
Original Path:
trunk
wrong file
Revision
3071 -
Directory Listing
Modified
Wed Jul 21 05:37:30 2010 UTC
(11 years, 10 months ago)
by
gross
Original Path:
trunk
new darcy flux
Revision
3070 -
Directory Listing
Modified
Wed Jul 21 04:09:58 2010 UTC
(11 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Fixord
Revision
3069 -
Directory Listing
Modified
Wed Jul 21 03:24:48 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
Updates to layer cake and cookbook as well as examples.
Revision
3068 -
Directory Listing
Modified
Mon Jul 19 00:43:31 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
Missing Figures
Revision
3067 -
Directory Listing
Modified
Mon Jul 19 00:40:37 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
Cookbook Updates - Chapter 9 - New figures.
Revision
3066 -
Directory Listing
Modified
Sun Jul 18 23:32:07 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
Missing Picture causing errors.
Revision
3065 -
Directory Listing
Modified
Thu Jul 15 02:59:27 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
Updates to newer examples.
Revision
3064 -
Directory Listing
Modified
Thu Jul 15 02:58:23 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
Updates to cookbook with fixed images and new chaper for 3d seismic model. New chapter is now added.
Revision
3063 -
Directory Listing
Modified
Thu Jul 15 02:57:46 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
Updates to cookbook with fixed images and new chaper for 3d seismic model.
Revision
3062 -
Directory Listing
Modified
Wed Jul 14 00:18:30 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
Joels suggested changes for naming conventions. The function is now located in esys.pycad.extras as layer_cake.
Revision
3061 -
Directory Listing
Modified
Tue Jul 13 23:34:10 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
function LayerCake fixed is now under esys.pycad.layer_cake
Revision
3060 -
Directory Listing
Modified
Tue Jul 13 00:55:09 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
Adding layer cake builder to pycad
Revision
3059 -
Directory Listing
Modified
Tue Jul 6 03:31:48 2010 UTC
(11 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Fix error message in launcher. Allow non-data objects to be passed to condEval
Revision
3056 -
Directory Listing
Modified
Mon Jul 5 00:07:16 2010 UTC
(11 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Have the escript launcher check the PBS_NODEFILE variable for hosts.
Revision
3055 -
Directory Listing
Modified
Sun Jul 4 21:52:36 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
3d wave equation and ABC
Revision
3054 -
Directory Listing
Modified
Wed Jun 30 02:22:25 2010 UTC
(11 years, 10 months ago)
by
ahallam
Original Path:
trunk
Missing Figures...
Revision
3053 -
Directory Listing
Modified
Tue Jun 29 01:31:31 2010 UTC
(11 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Fixes to deal with new savanna configuration.
Blocking out missing images.
Revision
3052 -
Directory Listing
Modified
Tue Jun 29 00:57:45 2010 UTC
(11 years, 11 months ago)
by
lgao
Original Path:
trunk
Revert the commit of this options file made by my last commit for Gauss-Seidel.
Revision
3051 -
Directory Listing
Modified
Tue Jun 29 00:45:49 2010 UTC
(11 years, 11 months ago)
by
lgao
Original Path:
trunk
Hybrid MPI/OpenMP versioned Gauss_Seidel preconditioner is added.
To use it, use "SolverOptions.GAUSS_SEIDEL_MPI" in python script.
Revision
3050 -
Directory Listing
Modified
Sun Jun 27 22:54:12 2010 UTC
(11 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Visual studio 2008 (v9.0) with Microsoft MPI libraries.
Courtesy of Gordon German.
Revision
3047 -
Directory Listing
Modified
Thu Jun 24 00:33:05 2010 UTC
(11 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Adding user name to tmpfiles.
Changing name of cluster options file to savanna from service0
Revision
3046 -
Directory Listing
Modified
Tue Jun 22 08:01:55 2010 UTC
(11 years, 11 months ago)
by
gross
Original Path:
trunk
some examples for a simple subduction model
Revision
3045 -
Directory Listing
Modified
Fri Jun 18 06:38:18 2010 UTC
(11 years, 11 months ago)
by
lgao
Original Path:
trunk
Enable MKL and Lapack (the unit test problem has been fixed after Artak's commit).
Revision
3044 -
Directory Listing
Modified
Fri Jun 18 04:48:47 2010 UTC
(11 years, 11 months ago)
by
artak
Original Path:
trunk
Put back
Revision
3043 -
Directory Listing
Modified
Fri Jun 18 04:45:14 2010 UTC
(11 years, 11 months ago)
by
artak
Original Path:
trunk
Problem with latest MKL should be fixed now. The problem was solving unrolled block matrix with MKL.
Revision
3042 -
Directory Listing
Modified
Fri Jun 18 04:01:43 2010 UTC
(11 years, 11 months ago)
by
lgao
Original Path:
trunk
Disable Lapack to disable MKL.
Revision
3041 -
Directory Listing
Modified
Fri Jun 18 04:01:40 2010 UTC
(11 years, 11 months ago)
by
artak
Original Path:
trunk
Should be faster with openmp. Some ROW-COL conversion.
Revision
3040 -
Directory Listing
Modified
Fri Jun 18 03:05:17 2010 UTC
(11 years, 11 months ago)
by
lgao
Original Path:
trunk
Using lastest MKL library and set "usemkl=no" before the
problem with MKL in unit tests is solved ("maximum number
of iteration step reached" for test_***_AMG_System).
Revision
3039 -
Directory Listing
Modified
Tue Jun 15 07:21:56 2010 UTC
(11 years, 11 months ago)
by
caltinay
Original Path:
trunk
Fix the NetCDF 4.1 issue (hopefully) - MPICH and IntelMPI have the required
definition.
Revision
3038 -
Directory Listing
Modified
Tue Jun 15 07:08:46 2010 UTC
(11 years, 11 months ago)
by
lgao
Original Path:
trunk
Update the path to Intel-mpi 4.0.0.027
Revision
3037 -
Directory Listing
Modified
Mon Jun 14 00:59:30 2010 UTC
(11 years, 11 months ago)
by
caltinay
Original Path:
trunk
Renamed escriptexport to weipa. Fixes #475.
Revision
3036 -
Directory Listing
Modified
Mon Jun 14 00:13:18 2010 UTC
(11 years, 11 months ago)
by
caltinay
Original Path:
trunk
Fixed compilation with MPI and NetCDF 4.1. Removed obsolete options file.
Revision
3035 -
Directory Listing
Modified
Thu Jun 10 01:48:41 2010 UTC
(11 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Lazy node support for conditional evaluation.
It should be a complete operation now.
Revision
3034 -
Directory Listing
Modified
Wed Jun 9 03:24:23 2010 UTC
(11 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Adding unit tests for condEval
Revision
3033 -
Directory Listing
Modified
Wed Jun 2 10:17:00 2010 UTC
(11 years, 11 months ago)
by
gross
Original Path:
trunk
fix for overflow
Revision
3032 -
Directory Listing
Modified
Mon May 31 02:58:15 2010 UTC
(11 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Add work around for windows not liking chained X::Y::Z.
TestDomain now supports tags and getX.
This is to allow testing for some features without invoking finley
Revision
3031 -
Directory Listing
Modified
Thu May 27 04:04:33 2010 UTC
(12 years ago)
by
jfenwick
Original Path:
trunk
Adding condEval function to Data.
Unit tests and a different name to follow.
Revision
3030 -
Directory Listing
Modified
Fri May 21 05:25:20 2010 UTC
(12 years ago)
by
lgao
Original Path:
trunk
Update savanna_options file to use the correct silo module.
Revision
3029 -
Directory Listing
Modified
Fri May 21 02:01:37 2010 UTC
(12 years ago)
by
ahallam
Original Path:
trunk
small updates and work on seismic code
Revision
3028 -
Directory Listing
Modified
Thu May 13 03:41:27 2010 UTC
(12 years ago)
by
gross
Original Path:
trunk
a new test problem (doesn't use unit testing)
Revision
3027 -
Directory Listing
Modified
Wed May 12 05:26:09 2010 UTC
(12 years ago)
by
gross
Original Path:
trunk
some little fixes in an old script
Revision
3026 -
Directory Listing
Modified
Mon May 10 06:23:49 2010 UTC
(12 years ago)
by
gross
Original Path:
trunk
some fix for omp
Revision
3025 -
Directory Listing
Modified
Thu May 6 01:20:46 2010 UTC
(12 years ago)
by
ahallam
Original Path:
trunk
Updates to wave equation examples. Pressure wave examples should be completed now. Working on seismic wave examples. Cookbook chapter for pressure wave examples also added.
Revision
3024 -
Directory Listing
Modified
Wed May 5 01:12:32 2010 UTC
(12 years ago)
by
jfenwick
Original Path:
trunk
Some savanna fixes but not complete
Revision
3023 -
Directory Listing
Modified
Wed May 5 01:00:16 2010 UTC
(12 years ago)
by
lgao
Original Path:
trunk
Option file update for machine "sunzi".
Revision
3021 -
Directory Listing
Modified
Tue May 4 10:14:12 2010 UTC
(12 years ago)
by
gross
Original Path:
trunk
MPI problem fixed.
Revision
3020 -
Directory Listing
Modified
Tue May 4 09:10:03 2010 UTC
(12 years ago)
by
gross
Original Path:
trunk
reactive solver added
Revision
3019 -
Directory Listing
Modified
Fri Apr 30 06:10:37 2010 UTC
(12 years ago)
by
jfenwick
Original Path:
trunk
adding Lin options
Revision
3018 -
Directory Listing
Modified
Thu Apr 29 21:35:24 2010 UTC
(12 years ago)
by
gross
Original Path:
trunk
some stupid lines removed
Revision
3017 -
Directory Listing
Modified
Thu Apr 29 03:40:12 2010 UTC
(12 years, 1 month ago)
by
artak
Original Path:
trunk
Some AMLI for systems fixes
Revision
3016 -
Directory Listing
Modified
Wed Apr 28 05:28:44 2010 UTC
(12 years, 1 month ago)
by
artak
Original Path:
trunk
firstprivate added for OpenMP
Revision
3015 -
Directory Listing
Modified
Wed Apr 28 05:06:26 2010 UTC
(12 years, 1 month ago)
by
artak
Original Path:
trunk
OpenMP commented out for now
Revision
3014 -
Directory Listing
Modified
Wed Apr 28 04:05:21 2010 UTC
(12 years, 1 month ago)
by
gross
Original Path:
trunk
a more stable handling of divergence in the CN or BE
Revision
3013 -
Directory Listing
Modified
Wed Apr 28 03:47:51 2010 UTC
(12 years, 1 month ago)
by
artak
Original Path:
trunk
Block separation part commented out for AMG preconditioner
Revision
3012 -
Directory Listing
Modified
Wed Apr 28 03:39:22 2010 UTC
(12 years, 1 month ago)
by
lgao
Original Path:
trunk
Fix the MPI compilation bug.
Revision
3011 -
Directory Listing
Modified
Wed Apr 28 02:21:23 2010 UTC
(12 years, 1 month ago)
by
artak
Original Path:
trunk
New method added for unrolling System matrix. Direct solver now uses unrolled copy of the AMG matrix.
Revision
3010 -
Directory Listing
Modified
Tue Apr 27 05:10:46 2010 UTC
(12 years, 1 month ago)
by
artak
Original Path:
trunk
Preparation for AMG on Systems without cut using frobenius norm
Revision
3009 -
Directory Listing
Modified
Thu Apr 22 11:17:42 2010 UTC
(12 years, 1 month ago)
by
gross
Original Path:
trunk
another MPI problem fixed
Revision
3008 -
Directory Listing
Modified
Thu Apr 22 10:19:20 2010 UTC
(12 years, 1 month ago)
by
gross
Original Path:
trunk
MPI problem fixed
Revision
3007 -
Directory Listing
Modified
Thu Apr 22 09:08:36 2010 UTC
(12 years, 1 month ago)
by
gross
Original Path:
trunk
typo for MPI cse fixed
Revision
3006 -
Directory Listing
Modified
Thu Apr 22 08:31:28 2010 UTC
(12 years, 1 month ago)
by
gross
Original Path:
trunk
local_norm_w removed
Revision
3005 -
Directory Listing
Modified
Thu Apr 22 05:59:31 2010 UTC
(12 years, 1 month ago)
by
gross
Original Path:
trunk
early call of setPreconditioner in FCT solver removed.
Revision
3004 -
Directory Listing
Modified
Wed Apr 14 05:27:30 2010 UTC
(12 years, 1 month ago)
by
ahallam
Original Path:
trunk
Sampling theorem, stability requirements, Laplacian discussion, Pressure wave PDE
Revision
3003 -
Directory Listing
Modified
Wed Apr 7 02:29:57 2010 UTC
(12 years, 1 month ago)
by
ahallam
Original Path:
trunk
Pressure wave working, accelleration example, new entries to cookbook for example 7.
Revision
3002 -
Directory Listing
Modified
Wed Apr 7 02:25:45 2010 UTC
(12 years, 1 month ago)
by
gross
Original Path:
trunk
gmsh now supports the Mesh.SubdivisionAlgorithm and Mesh.Algorithm3D option.
The Mesh.Algorithm, Mesh.Smoothing, Mesh.Optimization options are now set in the
.geo file rather than in the command line.
Revision
3001 -
Directory Listing
Modified
Wed Mar 31 04:29:10 2010 UTC
(12 years, 1 month ago)
by
ahallam
Original Path:
trunk
Pressue wave problem, looking at sampling theorem, and Crank-Nicolson
Revision
3000 -
Directory Listing
Modified
Tue Mar 30 03:10:13 2010 UTC
(12 years, 2 months ago)
by
lgao
Original Path:
trunk
Gauss_Seidel preconditioner is now SPD.
Revision
2999 -
Directory Listing
Modified
Fri Mar 26 00:00:39 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
NE set to 10 elemennt, because 6 is too small for mpi=8 job.
Revision
2998 -
Directory Listing
Modified
Wed Mar 24 04:00:20 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
More openMP corrections
Revision
2997 -
Directory Listing
Modified
Wed Mar 24 01:46:33 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
Some openMP corrections
Revision
2996 -
Directory Listing
Modified
Tue Mar 23 06:24:09 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
Tests are added for GAUSS_SEIDEL
Revision
2995 -
Directory Listing
Modified
Tue Mar 23 06:14:26 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
AMG levels maximum set 5
Revision
2994 -
Directory Listing
Modified
Tue Mar 23 06:13:14 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
AMG levels maximum set 5
Revision
2993 -
Directory Listing
Modified
Tue Mar 23 04:29:30 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
Some optimization on GAUSS_SEIDEL sweeps.
Revision
2992 -
Directory Listing
Modified
Tue Mar 23 04:16:28 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
Sweeps bug is fixed and some more comments added about how sweeps computed
Revision
2991 -
Directory Listing
Modified
Mon Mar 22 05:42:48 2010 UTC
(12 years, 2 months ago)
by
gross
Original Path:
trunk
isub as private added
Revision
2990 -
Directory Listing
Modified
Fri Mar 19 05:57:22 2010 UTC
(12 years, 2 months ago)
by
gross
Original Path:
trunk
some prints removed.
Revision
2989 -
Directory Listing
Modified
Thu Mar 18 01:45:55 2010 UTC
(12 years, 2 months ago)
by
gross
Original Path:
trunk
- bug in error handling in the case of lumped mass matrix fixed.
- switched back to rowsum lumping as there are problems with HRZ lumping for order 2
Revision
2988 -
Directory Listing
Modified
Tue Mar 16 06:14:30 2010 UTC
(12 years, 2 months ago)
by
gross
Original Path:
trunk
C-level lumping switched on
Revision
2987 -
Directory Listing
Modified
Tue Mar 16 01:32:43 2010 UTC
(12 years, 2 months ago)
by
gross
Original Path:
trunk
FCT solver rewritten
Revision
2982 -
Directory Listing
Modified
Wed Mar 10 04:27:47 2010 UTC
(12 years, 2 months ago)
by
caltinay
Original Path:
trunk
Some minor corrections to the cookbook (mainly word repetitions and typos).
Revision
2980 -
Directory Listing
Modified
Tue Mar 9 03:50:58 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
minor change to fix latest bug
Revision
2979 -
Directory Listing
Modified
Tue Mar 9 02:54:32 2010 UTC
(12 years, 2 months ago)
by
ahallam
Original Path:
trunk
cookbook review final final 3.1 - artak and tony corrections
Revision
2978 -
Directory Listing
Modified
Tue Mar 9 02:11:07 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
minor
Revision
2977 -
Directory Listing
Modified
Tue Mar 9 00:33:28 2010 UTC
(12 years, 2 months ago)
by
ahallam
Original Path:
trunk
cookbook review final 3.1
Revision
2976 -
Directory Listing
Modified
Mon Mar 8 01:18:33 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
Lame equation is corrected. Options for using smoother in AMG is added. A book on AMG is cited for standard coarsening.
Revision
2975 -
Directory Listing
Modified
Thu Mar 4 05:44:12 2010 UTC
(12 years, 2 months ago)
by
ahallam
Original Path:
trunk
Cookbook modifications Review -> Not quite finished yet.
New figure.
Revision
2974 -
Directory Listing
Modified
Thu Mar 4 03:09:35 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
forgot to skip example06.py as well
Revision
2973 -
Directory Listing
Modified
Thu Mar 4 03:07:22 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
example05c.py is not tested if matplotlib library version is too old, where quiver() does not support angle parameter.
Revision
2972 -
Directory Listing
Modified
Thu Mar 4 01:33:38 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
DONE. Einstain Summation Convention (ESC, what an irony, reminds me ESC button) is removed from cookbook as it is not used anywhere in the cookbook.
Revision
2971 -
Directory Listing
Modified
Wed Mar 3 23:19:00 2010 UTC
(12 years, 2 months ago)
by
jfenwick
Original Path:
trunk
I hate voodoo.
Putting pdfinfo directive in two places in the cookbook header so that
both versions of evince get the right title.
Revision
2970 -
Directory Listing
Modified
Wed Mar 3 05:23:50 2010 UTC
(12 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Fix out of date comment
Revision
2969 -
Directory Listing
Modified
Wed Mar 3 04:27:00 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
reached Chapter 4
Revision
2968 -
Directory Listing
Modified
Wed Mar 3 04:02:30 2010 UTC
(12 years, 2 months ago)
by
caltinay
Original Path:
trunk
Updated service0 & shake75 options to use cxx_extra
Revision
2967 -
Directory Listing
Modified
Wed Mar 3 03:50:46 2010 UTC
(12 years, 2 months ago)
by
caltinay
Original Path:
trunk
scons now understands cc_extra and cxx_extra. The former applies only to the
C compiler, the latter to the C++ compiler which fixes #510.
Revision
2966 -
Directory Listing
Modified
Wed Mar 3 03:19:39 2010 UTC
(12 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Fixing non-ansi compliant code
Revision
2965 -
Directory Listing
Modified
Wed Mar 3 01:53:41 2010 UTC
(12 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Added MPI aware MIS
Revision
2964 -
Directory Listing
Modified
Wed Mar 3 01:21:09 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
up to Chapter 3
Revision
2963 -
Directory Listing
Modified
Wed Mar 3 01:10:11 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
up to section 2.1.9
Revision
2962 -
Directory Listing
Modified
Wed Mar 3 01:03:56 2010 UTC
(12 years, 2 months ago)
by
gross
Original Path:
trunk
bar as unit added
Revision
2961 -
Directory Listing
Modified
Wed Mar 3 00:56:59 2010 UTC
(12 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Hacking cookbook
Revision
2960 -
Directory Listing
Modified
Tue Mar 2 07:54:11 2010 UTC
(12 years, 2 months ago)
by
gross
Original Path:
trunk
new DarcyFlux solver
Revision
2959 -
Directory Listing
Modified
Tue Mar 2 06:27:17 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
more corrections on exmaple 1, up to section 2.1.5
Revision
2958 -
Directory Listing
Modified
Tue Mar 2 06:00:39 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
more corrections on exmaple 1, up to section 2.1.5
Revision
2957 -
Directory Listing
Modified
Tue Mar 2 01:28:19 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
more corrections
Revision
2956 -
Directory Listing
Modified
Mon Mar 1 01:31:59 2010 UTC
(12 years, 2 months ago)
by
artak
Original Path:
trunk
First corrections: NEEDS MORE AND MORE...
Revision
2955 -
Directory Listing
Modified
Mon Mar 1 00:54:37 2010 UTC
(12 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Fix hackscore error
Revision
2954 -
Directory Listing
Modified
Fri Feb 26 06:09:47 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
bug introduced by a smart programmer to the Locator has been fixed?
Revision
2953 -
Directory Listing
Modified
Thu Feb 25 10:00:23 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
final touch to the naming in the cookbook
Revision
2952 -
Directory Listing
Modified
Thu Feb 25 09:52:10 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
even more renaming in the cookbook
Revision
2951 -
Directory Listing
Modified
Thu Feb 25 07:43:40 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
more renaming in the cookbook
Revision
2950 -
Directory Listing
Modified
Thu Feb 25 07:33:16 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
more renames in the cookbook.
Revision
2949 -
Directory Listing
Modified
Thu Feb 25 05:23:11 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
renaming examples part 1
Revision
2948 -
Directory Listing
Modified
Thu Feb 25 04:54:30 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
a new almost completed version of the cookbook
Revision
2944 -
Directory Listing
Modified
Tue Feb 23 23:51:20 2010 UTC
(12 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Fix latex markup in pdf title.
It turns out \pdfinfo must come after \maketitle if you don't want the
latex version of the title.
This behaviour does not happen in evince 2.22.2 (standard in lenny) but does
happen in more recent versions.
Revision
2943 -
Directory Listing
Modified
Tue Feb 23 01:49:27 2010 UTC
(12 years, 3 months ago)
by
artak
Original Path:
trunk
VTK as a required package is removed from cookbook
Revision
2942 -
Directory Listing
Modified
Mon Feb 22 05:43:44 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Fixed a small typo in the cookbook abstract.
Revision
2941 -
Directory Listing
Modified
Mon Feb 22 05:17:43 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
saveESD now doesn't store the absolute path to the files in the ESD file so
the whole dataset can be moved easily.
Revision
2940 -
Directory Listing
Modified
Fri Feb 19 00:38:45 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Minor potential optimization: prefer empty() over size()==0.
Revision
2939 -
Directory Listing
Modified
Thu Feb 18 04:16:59 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
some print statements removed.
Revision
2938 -
Directory Listing
Modified
Thu Feb 18 00:24:35 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
saveESD: Add a warning about the experimental status of ESD.
Save the ESD file within the data directory.
Revision
2937 -
Directory Listing
Modified
Tue Feb 16 00:01:52 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Corrected an MPI datatype
Revision
2936 -
Directory Listing
Modified
Mon Feb 15 03:29:53 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
some clarification added.
Revision
2935 -
Directory Listing
Modified
Mon Feb 15 03:15:59 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
pycad support 3D transfinite meshing now.
Revision
2934 -
Directory Listing
Modified
Fri Feb 12 05:09:06 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
gmsh reader supports second order recs and hex now
Revision
2933 -
Directory Listing
Modified
Tue Feb 9 03:27:37 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
test for positivity of initial solution in transport solver has been switched on again
Revision
2932 -
Directory Listing
Modified
Mon Feb 8 06:48:19 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
printfs removed.
Revision
2931 -
Directory Listing
Modified
Mon Feb 8 06:45:41 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
more changes on the cookbook
Revision
2930 -
Directory Listing
Modified
Mon Feb 8 06:25:43 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
escriptconvert can now convert both to Silo and VTK and is thus built by
default
Revision
2929 -
Directory Listing
Modified
Mon Feb 8 05:13:27 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Implemented mantis issue 464 in dataexporter: better resolution for Tri6 and
Tet10 elements via point-in-triangle and point-in-tetrahedron tests.
Revision
2926 -
Directory Listing
Modified
Thu Feb 4 23:13:53 2010 UTC
(12 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Attempting to fix a problem with windows linking in the ironically named INKNOWWHATIMDOING section
Revision
2925 -
Directory Listing
Modified
Thu Feb 4 23:12:34 2010 UTC
(12 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Update savanna to build c99 style
Revision
2923 -
Directory Listing
Modified
Thu Feb 4 04:05:36 2010 UTC
(12 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Bringing non-release specific things from stage3.1 r2922 back to trunk
Revision
2919 -
Directory Listing
Modified
Thu Feb 4 00:53:58 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Took over Macro element handling from finley.saveVTK.
Revision
2918 -
Directory Listing
Modified
Thu Feb 4 00:53:37 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Quick fix for Windows scons problem due to the same files being compiled twice
in the same directory. Visit plugin is not for Windows anyway so disabled it
there.
Revision
2917 -
Directory Listing
Modified
Wed Feb 3 06:19:50 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Fix for the fix ;-) The dataexporter is used in a context where HAVE_MPI is set
but mpi not initialised -> have to check for mpiSize.
Revision
2915 -
Directory Listing
Modified
Wed Feb 3 05:55:16 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
uninitialised variable error for non-mpi case fixed.
Revision
2914 -
Directory Listing
Modified
Wed Feb 3 05:38:12 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
missing import added.
Revision
2913 -
Directory Listing
Modified
Wed Feb 3 04:30:46 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
type fixed
Revision
2912 -
Directory Listing
Modified
Wed Feb 3 03:31:24 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
some missing functions
Revision
2911 -
Directory Listing
Modified
Wed Feb 3 03:30:40 2010 UTC
(12 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Changed name of launcher and rotated figure correctly.
Revision
2910 -
Directory Listing
Modified
Wed Feb 3 03:22:31 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Added a libescriptreader.a target which does not depend on escript or finley
at runtime. This will be used for the VisIt plugin so is not built by default.
Revision
2907 -
Directory Listing
Modified
Wed Feb 3 01:39:15 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
needdirs replaced by mkDir from esys.escript
Revision
2906 -
Directory Listing
Modified
Tue Feb 2 05:26:03 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
some minor :-) fix.
Revision
2905 -
Directory Listing
Modified
Tue Feb 2 04:26:42 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
some missing files.
Revision
2904 -
Directory Listing
Modified
Tue Feb 2 04:21:52 2010 UTC
(12 years, 3 months ago)
by
gross
Original Path:
trunk
more revision on cookbook: example 1 and 2 have been swapped.
Revision
2903 -
Directory Listing
Modified
Tue Feb 2 00:20:52 2010 UTC
(12 years, 3 months ago)
by
lgao
Original Path:
trunk
Switch to MKL 10.2.2.025 on service0.
Revision
2902 -
Directory Listing
Modified
Mon Feb 1 23:53:16 2010 UTC
(12 years, 3 months ago)
by
lgao
Original Path:
trunk
Switch to Parmetis 3.1.1 on service0.
Revision
2900 -
Directory Listing
Modified
Mon Feb 1 06:05:38 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Switch to Silo 4.7.2 on service0 (bug fix release).
Revision
2899 -
Directory Listing
Modified
Mon Feb 1 01:55:53 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Added missing declspec to FileSavers.
Revision
2898 -
Directory Listing
Modified
Mon Feb 1 01:23:46 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Reverted the move of system_dep.h since it didn't solve the problem nicely.
Created a wrapper class for the needed functionality instead.
Revision
2897 -
Directory Listing
Modified
Mon Feb 1 01:22:50 2010 UTC
(12 years, 3 months ago)
by
lgao
Original Path:
trunk
Fix the Parmetis problem related with Mantis issue 0000480.
In case there is any node with no vertex, Parmetis will not
be used and a message will be printed.
Revision
2896 -
Directory Listing
Modified
Sun Jan 31 22:17:22 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Added missing extern C for finley include.
Revision
2895 -
Directory Listing
Modified
Fri Jan 29 04:58:16 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Moved finley's system_dep.h file up to the C level to be able to export two
functions that are used by the dataexporter. Changed include paths and C++
style comments accordingly.
Revision
2893 -
Directory Listing
Modified
Fri Jan 29 03:41:33 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Link to esysUtils to be able to use escript exceptions.
Revision
2891 -
Directory Listing
Modified
Fri Jan 29 00:26:07 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Fix for ambiguous call to sqrt...
Revision
2890 -
Directory Listing
Modified
Fri Jan 29 00:22:39 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Oh, apparently a 'defect in the standard' and VC++ didn't like it. Hopefully,
this should fix it.
Revision
2888 -
Directory Listing
Modified
Fri Jan 29 00:07:00 2010 UTC
(12 years, 3 months ago)
by
caltinay
Original Path:
trunk
Looks like netcdf.hh doesn't exist on Windows so changed to netcdfcpp.h.
Revision
2887 -
Directory Listing
Modified
Thu Jan 28 05:49:09 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Fixed a compile issue with MPI.
Revision
2886 -
Directory Listing
Modified
Thu Jan 28 05:39:23 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
New version of saveVTK within dataexporter. Not pythonised yet since it needs
more testing and release 3.1 will not ship dataexporter.
Revision
2884 -
Directory Listing
Modified
Thu Jan 28 05:00:59 2010 UTC
(12 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Updated various nan checks to consider the windows _isnan
The default compiler flags have changed as well.
+ intel will now take -std=c99 instead of -ansi
+ gcc has -ansi removed which means it defaults to gnu99
We could have set gcc to -std=c99 as well but that gives a
warning on g++ which gets converted into an error by our
pedantic warning.
Rationale:
We need something more than ansi to get proper nan handling.
- We currently don't have any code which does not comply with ansi
but the nan checks don't work.
Impact:
If we want our code to still be able to compile on older compilers
(at reduced functionality) we need to be careful not to introduce other
c99-isms.
If we don't care, then it's time for some celebratory // comments.
Revision
2883 -
Directory Listing
Modified
Thu Jan 28 02:28:27 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Switch to gcc 4.4 on guineapig
Revision
2882 -
Directory Listing
Modified
Thu Jan 28 02:27:49 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Scons now allows to specify which C & C++ compiler to use via cc and cxx
variables. Fixes mantis # 485.
Revision
2881 -
Directory Listing
Modified
Thu Jan 28 02:03:15 2010 UTC
(12 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Don't panic.
Updating copyright stamps
Revision
2880 -
Directory Listing
Modified
Thu Jan 28 01:21:30 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Better resolution for Hex27 & Rec9 data in dataexporter (mantis #486).
Saved Silo data resolution is now equal to finley.SaveVTK generated data in
all cases.
Revision
2879 -
Directory Listing
Modified
Thu Jan 28 01:00:26 2010 UTC
(12 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Move definition of build_platform on t.poulet suggestion.
Redefine the IS_NAN macro to replace versions commented as
'This does not work'
If you are not compiling with a c99 compliant compiler you will not
recognise nulls but this seems to be the best we can do right now
without checking for explicit bit patterns.
Revision
2878 -
Directory Listing
Modified
Thu Jan 28 00:59:30 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
more work on cookbook review
Revision
2877 -
Directory Listing
Modified
Thu Jan 28 00:28:45 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Fixes to Silo writer: Multivars for tensors are now correct even with empty
ranks.
Revision
2875 -
Directory Listing
Modified
Wed Jan 27 04:09:24 2010 UTC
(12 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Updated version string to something which won't keep changing
Revision
2873 -
Directory Listing
Modified
Wed Jan 27 01:09:33 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Fix for mantis #480 when parmetis is off.
Revision
2872 -
Directory Listing
Modified
Wed Jan 27 00:59:58 2010 UTC
(12 years, 4 months ago)
by
artak
Original Path:
trunk
/home/ changed to /Users/ for mac
Revision
2870 -
Directory Listing
Modified
Mon Jan 25 08:34:15 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
more review on the cookbook.
Revision
2869 -
Directory Listing
Modified
Mon Jan 25 05:11:28 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
back to the old version. The last checkin was a mistake.
Revision
2868 -
Directory Listing
Modified
Mon Jan 25 04:44:45 2010 UTC
(12 years, 4 months ago)
by
artak
Original Path:
trunk
Some fixes for 3.1 release. Notes about Snow Leopard is added and installing from ports removed.
Revision
2867 -
Directory Listing
Modified
Fri Jan 22 06:28:02 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
now option -i is used if no script is given
Revision
2866 -
Directory Listing
Modified
Fri Jan 22 05:38:56 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
small fix for the case n=1 under mpi
Revision
2865 -
Directory Listing
Modified
Fri Jan 22 03:19:32 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
launcher for MPI supports now -i option (see mantis 361)
Revision
2864 -
Directory Listing
Modified
Fri Jan 22 03:09:55 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
projector added to users guide
Revision
2863 -
Directory Listing
Modified
Thu Jan 21 07:18:37 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
fix for mantis 454
Revision
2862 -
Directory Listing
Modified
Thu Jan 21 04:45:39 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
more review in the cookbook
Revision
2861 -
Directory Listing
Modified
Wed Jan 20 02:47:42 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
some modification to the cookbook
Revision
2860 -
Directory Listing
Modified
Tue Jan 19 05:25:39 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
prints removed.
Revision
2859 -
Directory Listing
Modified
Tue Jan 19 05:21:50 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
a work around for gcc 4.4 added.
Revision
2858 -
Directory Listing
Modified
Tue Jan 19 01:07:52 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
small fixes with the reduced solution for the transport problem
Revision
2857 -
Directory Listing
Modified
Mon Jan 18 07:44:42 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
test for ApproximationOrder added and Transport type problem now choose reduced when necessary only.
Revision
2856 -
Directory Listing
Modified
Mon Jan 18 04:14:37 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
FunctionSpaces provide now some information about their approximation order.
Revision
2855 -
Directory Listing
Modified
Mon Jan 18 03:39:29 2010 UTC
(12 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Fixed
Revision
2854 -
Directory Listing
Modified
Mon Jan 18 01:54:04 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Fixed a compile error and removed unneeded member.
Revision
2853 -
Directory Listing
Modified
Mon Jan 18 01:46:05 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Do not attempt to read node file data if #nodes=0.
Revision
2852 -
Directory Listing
Modified
Mon Jan 18 00:22:23 2010 UTC
(12 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Fix MPI issue in toString.
Fixes unit tet failure in myfistrscript.py
Revision
2851 -
Directory Listing
Modified
Fri Jan 15 07:37:47 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
typos fixed.
Revision
2850 -
Directory Listing
Modified
Fri Jan 15 07:14:25 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
the powerlaw is working again. tests are switched on again.
Revision
2849 -
Directory Listing
Modified
Fri Jan 15 03:45:52 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Oops...
Revision
2848 -
Directory Listing
Modified
Fri Jan 15 03:44:44 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Removed unneeded member and initialised some others in the constructor.
Revision
2847 -
Directory Listing
Modified
Fri Jan 15 03:35:05 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Improved error handling when using MPI and fixed Silo output when not all
ranks contribute to a data variable.
Revision
2846 -
Directory Listing
Modified
Fri Jan 15 03:16:08 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
removeGhostNodes is broken and unnecessary anyway so removed.
Revision
2845 -
Directory Listing
Modified
Fri Jan 15 03:10:42 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
escriptconvert passes MPI communicator to EscriptDataset now so files are
read/written in parallel.
Revision
2844 -
Directory Listing
Modified
Fri Jan 15 00:23:39 2010 UTC
(12 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Fixed some options to deal with silo errors.
Revision
2843 -
Directory Listing
Modified
Thu Jan 14 05:51:28 2010 UTC
(12 years, 4 months ago)
by
gross
Original Path:
trunk
new compressible solver
Revision
2842 -
Directory Listing
Modified
Thu Jan 14 05:42:02 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Changed domain::dump() to write out NodeDistribution & DofDistribution even if
the current process has 0 nodes.
Revision
2841 -
Directory Listing
Modified
Thu Jan 14 01:02:56 2010 UTC
(12 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Unit tests for 2838 and adding setTags variant which takes a string instead of a tag num.
Revision
2840 -
Directory Listing
Modified
Thu Jan 14 01:00:15 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Enabled Silo on guineapig
Revision
2839 -
Directory Listing
Modified
Wed Jan 13 23:34:49 2010 UTC
(12 years, 4 months ago)
by
artak
Original Path:
trunk
minor compiliation problem under MKL is fixed.
Revision
2838 -
Directory Listing
Modified
Wed Jan 13 06:01:03 2010 UTC
(12 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Vector, Tensor, Tensor3, Tensor4 can now take a (nested) sequence for
their initial value.
Revision
2837 -
Directory Listing
Modified
Wed Jan 13 01:28:23 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Added missing import statement.
Revision
2836 -
Directory Listing
Modified
Mon Jan 11 01:41:29 2010 UTC
(12 years, 4 months ago)
by
artak
Original Path:
trunk
minor adjustments
Revision
2835 -
Directory Listing
Modified
Mon Jan 11 01:23:52 2010 UTC
(12 years, 4 months ago)
by
artak
Original Path:
trunk
Default smoother set to Gauss-Seidel. This one more robust than jacobi, but jacobi is faster.
Revision
2834 -
Directory Listing
Modified
Thu Jan 7 06:06:56 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
Reduced elements are now handled separate from the main elements within the
data exporter. This simplifies usage considerably.
Revision
2833 -
Directory Listing
Modified
Thu Jan 7 05:44:46 2010 UTC
(12 years, 4 months ago)
by
artak
Original Path:
trunk
minor openmp fix
Revision
2832 -
Directory Listing
Modified
Thu Jan 7 05:16:50 2010 UTC
(12 years, 4 months ago)
by
artak
Original Path:
trunk
minor
Revision
2831 -
Directory Listing
Modified
Thu Jan 7 05:08:19 2010 UTC
(12 years, 4 months ago)
by
artak
Original Path:
trunk
Splitting can be read from file. This is useful for testing.
Revision
2830 -
Directory Listing
Modified
Thu Jan 7 04:49:55 2010 UTC
(12 years, 4 months ago)
by
caltinay
Original Path:
trunk
saveSilo now passes MPI communicator to data exporter.
Revision
2829 -
Directory Listing
Modified
Wed Jan 6 02:51:31 2010 UTC
(12 years, 4 months ago)
by
ahallam
Original Path:
trunk
minor updates to cookbook
Revision
2828 -
Directory Listing
Modified
Tue Dec 22 01:24:40 2009 UTC
(12 years, 5 months ago)
by
artak
Original Path:
trunk
Smoother for AMG now can be selected from python. Now only Jacobi and Gauss-Seidel are available as smoothers.
Revision
2827 -
Directory Listing
Modified
Fri Dec 18 03:41:09 2009 UTC
(12 years, 5 months ago)
by
jfenwick
Original Path:
trunk
There is now a mechanism to pass a C function into escript and invoke it on each datapoint with:
applyBinaryCFunction
Warning in order to use this function your escript must be compiled with
scons ... iknowwhatimdoing=yes
---------------------
Because this code relies on casts that the C standard does not allow some code has been moved into Dodgy{.h .cpp}
Scons files have been modified to treat these files specially [Warnings are not errors for these files.]
Revision
2826 -
Directory Listing
Modified
Fri Dec 18 01:33:35 2009 UTC
(12 years, 5 months ago)
by
artak
Original Path:
trunk
MINRES anf TFQMR add initioal guess. Tolerance for both solvers changed. However tolerance computaion needs to be more involved than it is now to avoid unnecessary very small tolerances.
Revision
2825 -
Directory Listing
Modified
Thu Dec 17 00:10:06 2009 UTC
(12 years, 5 months ago)
by
jfenwick
Original Path:
trunk
More fixes to resolveGroup
Revision
2824 -
Directory Listing
Modified
Wed Dec 16 01:22:56 2009 UTC
(12 years, 5 months ago)
by
jfenwick
Original Path:
trunk
ResolveGroup fixed so it actually resolves groups.
Children, when you iterate backwards remember its i>=0 not i>0
Revision
2822 -
Directory Listing
Modified
Mon Dec 14 03:10:16 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
dataexporter: Ensure that NetCDF files created using N ranks are only loaded
when mpi size equals N or 1.
Revision
2821 -
Directory Listing
Modified
Fri Dec 11 07:00:35 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
EscriptDataset takes an optional communicator now.
Revision
2820 -
Directory Listing
Modified
Thu Dec 10 05:03:11 2009 UTC
(12 years, 5 months ago)
by
artak
Original Path:
trunk
Paso Testing tools now can select coarseing.The builld_PasoTests target is also added to scons.
Revision
2819 -
Directory Listing
Modified
Thu Dec 10 04:12:35 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
Added include to make badger happy. Hope everyone's happy now.
Revision
2818 -
Directory Listing
Modified
Thu Dec 10 04:10:16 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
dataexporter links against escript now to make the Mac happy.
Revision
2817 -
Directory Listing
Modified
Thu Dec 10 02:12:33 2009 UTC
(12 years, 5 months ago)
by
artak
Original Path:
trunk
test is added for selecting standard coarsening.
Revision
2816 -
Directory Listing
Modified
Thu Dec 10 02:09:43 2009 UTC
(12 years, 5 months ago)
by
artak
Original Path:
trunk
Standard coarsening is added to options list.
Revision
2815 -
Directory Listing
Modified
Tue Dec 8 08:15:19 2009 UTC
(12 years, 5 months ago)
by
gross
Original Path:
trunk
this fixes a problem of element distribution attribute for lines
Revision
2814 -
Directory Listing
Modified
Tue Dec 8 01:50:29 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
Removed minor code duplication.
Revision
2813 -
Directory Listing
Modified
Tue Dec 8 00:30:13 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
Added missing include.
Revision
2812 -
Directory Listing
Modified
Tue Dec 8 00:12:07 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
Implemented saveSilo within a new dataexporter module. If Silo is not available
at compile time the function throws. Ultimately, saveVTK will be moved here as
well.
Revision
2811 -
Directory Listing
Modified
Mon Dec 7 05:57:16 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
Fixed compilation when silo is not used.
Revision
2810 -
Directory Listing
Modified
Mon Dec 7 04:13:49 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
Reincarnation of the escriptreader as a more flexible escriptexport library:
- can be initialised with instances of escript::Data and Finley_Mesh
- is now MPI aware at the EscriptDataset level including Silo writer
- now uses boost shared pointers
The lib is currently only used by the escriptconvert tool but this is going to
change...
Revision
2809 -
Directory Listing
Modified
Mon Dec 7 03:39:37 2009 UTC
(12 years, 5 months ago)
by
jfenwick
Original Path:
trunk
TestDomain now divides the total number of samples between ranks rather
than putting all samples on all ranks.
Revision
2808 -
Directory Listing
Modified
Mon Dec 7 00:26:45 2009 UTC
(12 years, 5 months ago)
by
artak
Original Path:
trunk
default coarseneing is Ruge-Stueben.
Revision
2807 -
Directory Listing
Modified
Mon Dec 7 00:02:55 2009 UTC
(12 years, 5 months ago)
by
artak
Original Path:
trunk
Post and pre smoothing parameters are added for AMLI. Little bit reengineering according to Axelson's original AMLI paper.
Revision
2806 -
Directory Listing
Modified
Fri Dec 4 06:46:13 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
bin/escript:
- bail out early if buildvars is not around
- quote variables to avoid syntax errors
- some work towards POSIX compliance (s/==/=/ in string comparisons)
- escript -V was still spitting out 'pre2.0' -> changed to pre4.0
- fixed minor typos
Revision
2805 -
Directory Listing
Modified
Fri Dec 4 05:21:31 2009 UTC
(12 years, 5 months ago)
by
artak
Original Path:
trunk
minor
Revision
2804 -
Directory Listing
Modified
Fri Dec 4 02:06:51 2009 UTC
(12 years, 5 months ago)
by
artak
Original Path:
trunk
Some memory and code optimizations in updateWeights method.
Revision
2803 -
Directory Listing
Modified
Thu Dec 3 05:35:20 2009 UTC
(12 years, 5 months ago)
by
artak
Original Path:
trunk
Parameters are added for post and pre smoothing. Now user can choose number of pre and post smoothing steps in AMG (e.g. setNumPreSweeps(5)).
Revision
2802 -
Directory Listing
Modified
Thu Dec 3 01:51:55 2009 UTC
(12 years, 5 months ago)
by
artak
Original Path:
trunk
Aggressive coarsening is implemented. Removes more elements but adds more iteration steps.
Revision
2801 -
Directory Listing
Modified
Thu Dec 3 01:45:48 2009 UTC
(12 years, 5 months ago)
by
ahallam
Original Path:
trunk
Final updates to first 3 chapters of cookbook before moving on to linear elastic wave equation examples.
Revision
2800 -
Directory Listing
Modified
Thu Dec 3 01:45:12 2009 UTC
(12 years, 5 months ago)
by
ahallam
Original Path:
trunk
Getting rid of unneeded directories
Revision
2799 -
Directory Listing
Modified
Thu Dec 3 01:35:08 2009 UTC
(12 years, 5 months ago)
by
jfenwick
Original Path:
trunk
resolveGroup function added to python.
Unit tests for resolveGroup, resolve and delay.
Revision
2798 -
Directory Listing
Modified
Thu Dec 3 01:02:47 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
Use system NetCDF on guineapig.
Revision
2797 -
Directory Listing
Modified
Wed Dec 2 23:30:21 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
Changed NetCDF include path - this should enable netcdf on guineapig.
Revision
2796 -
Directory Listing
Modified
Wed Dec 2 05:02:43 2009 UTC
(12 years, 5 months ago)
by
caltinay
Original Path:
trunk
null-commit to trigger buildbot
Revision
2795 -
Directory Listing
Modified
Wed Dec 2 02:39:23 2009 UTC
(12 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Removed node limit on lazy expressions.
The parameter LAZY_STR_FMT {0,1,2} controls how lazy expressions are printed.
0 gives default output
1 gives a tree form.
2 just prints depth
Revision
2794 -
Directory Listing
Modified
Wed Dec 2 00:43:17 2009 UTC
(12 years, 5 months ago)
by
gross
Original Path:
trunk
returning to the older version.
Revision
2793 -
Directory Listing
Modified
Tue Dec 1 06:10:10 2009 UTC
(12 years, 5 months ago)
by
gross
Original Path:
trunk
some new util functions
Revision
2792 -
Directory Listing
Modified
Tue Dec 1 05:02:18 2009 UTC
(12 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Oops.
matrixInverse now checks MPI to see if any other ranks raised exceptions.
Revision
2791 -
Directory Listing
Modified
Tue Dec 1 03:36:36 2009 UTC
(12 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Added expression depth to toString for LazyData.
Revision
2790 -
Directory Listing
Modified
Sun Nov 29 23:57:45 2009 UTC
(12 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Fix scons file for unit tests.
Revision
2789 -
Directory Listing
Modified
Fri Nov 27 05:40:25 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
Removed unused variable from OpenMP block.
Fixes compilation error with gcc 4.3.
Revision
2788 -
Directory Listing
Modified
Fri Nov 27 05:23:14 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Go back to version 10
Revision
2787 -
Directory Listing
Modified
Fri Nov 27 05:03:09 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Worked around icc11 problem in table interpolate.
Best guess is that a stackframe was getting mauled somehow.
Revision
2786 -
Directory Listing
Modified
Fri Nov 27 01:07:28 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed a little typo.
Revision
2785 -
Directory Listing
Modified
Thu Nov 26 05:17:40 2009 UTC
(12 years, 6 months ago)
by
lgao
Original Path:
trunk
Minor fix for unused variables
Revision
2784 -
Directory Listing
Modified
Thu Nov 26 05:09:14 2009 UTC
(12 years, 6 months ago)
by
artak
Original Path:
trunk
More performance tunning. Sparsity check is added. If Coarse level matrix is denser than 1% then stop.
Revision
2783 -
Directory Listing
Modified
Thu Nov 26 05:07:33 2009 UTC
(12 years, 6 months ago)
by
lgao
Original Path:
trunk
process C_TensorBinaryOperation at the level of a whole sample rather than
each datapoint when an Expanded data is operating with a Constant data. This
could improve the efficiency of the non-lazy version escipt.
Revision
2782 -
Directory Listing
Modified
Thu Nov 26 04:42:29 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
Added missing var declaration.
Revision
2781 -
Directory Listing
Modified
Thu Nov 26 04:12:11 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Some additional info from Thomas
Revision
2780 -
Directory Listing
Modified
Thu Nov 26 03:54:24 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Put the windows instructions back in.
Put more detail in the MPI hints.
Revision
2779 -
Directory Listing
Modified
Thu Nov 26 03:51:15 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed more instances of garbage=cstring+integer errors (d'oh!)
Revision
2778 -
Directory Listing
Modified
Thu Nov 26 01:50:30 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed unintended pointer arithmetic with c-strings in MeshAdapter::dump() and
shortened error messages while being at it.
Revision
2777 -
Directory Listing
Modified
Thu Nov 26 01:06:00 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Added the LAZY_STACK_PROF #define for Lazy.
If enabled lazy will print the (roughly) maximum stack used by any openmp
thread over the course of this session.
Revision
2776 -
Directory Listing
Modified
Wed Nov 25 23:41:16 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Switching tests which read gmsh to not run under MPI
Revision
2775 -
Directory Listing
Modified
Wed Nov 25 05:01:43 2009 UTC
(12 years, 6 months ago)
by
ahallam
Original Path:
trunk
minor updates to cookbook; new python syntax highlighting
Revision
2774 -
Directory Listing
Modified
Wed Nov 25 04:24:03 2009 UTC
(12 years, 6 months ago)
by
artak
Original Path:
trunk
#ifndef changed to #ifdef in makeNaN
Revision
2773 -
Directory Listing
Modified
Wed Nov 25 04:02:01 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Hadn't realised isnan was a macro.
Checking for it rather than FP_NAN
Revision
2772 -
Directory Listing
Modified
Wed Nov 25 02:02:50 2009 UTC
(12 years, 6 months ago)
by
ahallam
Original Path:
trunk
Fixed auto build error for heatrefraction_mesher002.py
Added clear figure line for run_heatrefraction.py process.
Revision
2771 -
Directory Listing
Modified
Wed Nov 25 01:38:49 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fix
Revision
2770 -
Directory Listing
Modified
Wed Nov 25 01:24:51 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Removed buffer implementation of Lazy.
Removed supporting Alloc/Free Sample buffer calls.
Revision
2769 -
Directory Listing
Modified
Tue Nov 24 00:36:22 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Unit tests for NaN handling
Revision
2768 -
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Modified
Mon Nov 23 23:56:14 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Dodge problem in NoPDE class
Revision
2767 -
Directory Listing
Modified
Mon Nov 23 06:00:37 2009 UTC
(12 years, 6 months ago)
by
artak
Original Path:
trunk
More openmp calls are added,escpecialy in arg_max method.
Revision
2766 -
Directory Listing
Modified
Mon Nov 23 05:10:53 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
inf, sup and Lsup now correctly handle +-infinity.
They also will return NaN if any part of their input is NaN.
This will break unit tests since it exposes the hidden bug (#447 in mantis)
This code relies on the ability to test for NaNs.
To do this it makes use of macros and functions from C99.
If you do not have a C99 compiler, then you will probably get the old behaviour.
That is, you won't know when you have NaNs.
Also did minor tweak to saveDataCSV doco.
Revision
2765 -
Directory Listing
Modified
Fri Nov 20 01:49:19 2009 UTC
(12 years, 6 months ago)
by
artak
Original Path:
trunk
First steps toward efficiency. Coarsening process is improved. Some profiling tools are added.
Revision
2764 -
Directory Listing
Modified
Thu Nov 19 23:48:05 2009 UTC
(12 years, 6 months ago)
by
artak
Original Path:
trunk
Some openMP calls are removed.
Revision
2763 -
Directory Listing
Modified
Thu Nov 19 06:28:03 2009 UTC
(12 years, 6 months ago)
by
lgao
Original Path:
trunk
Minor fix to my previous commit.
Revision
2762 -
Directory Listing
Modified
Thu Nov 19 06:24:44 2009 UTC
(12 years, 6 months ago)
by
lgao
Original Path:
trunk
fix the compilation problem I introduced for Non-MPI build due
to my last commit for Data::toString().
Revision
2761 -
Directory Listing
Modified
Thu Nov 19 06:11:07 2009 UTC
(12 years, 6 months ago)
by
artak
Original Path:
trunk
AMLI preconditioner (previously called AMG)
Revision
2760 -
Directory Listing
Modified
Thu Nov 19 05:22:45 2009 UTC
(12 years, 6 months ago)
by
artak
Original Path:
trunk
The first version of the new AMG preconditioner. It need a lot of polishing for efficiency. Old AMG now called AMLI preconditioner.
Revision
2759 -
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Modified
Thu Nov 19 05:19:47 2009 UTC
(12 years, 6 months ago)
by
artak
Original Path:
trunk
methods needed for the new AMG preconditioner
Revision
2758 -
Directory Listing
Modified
Thu Nov 19 04:21:55 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
Added missing imports. all_tests still fails though due to other problems.
Revision
2757 -
Directory Listing
Modified
Thu Nov 19 01:04:57 2009 UTC
(12 years, 6 months ago)
by
lgao
Original Path:
trunk
Solve the print statement problem for MPI program (matis issue 465).
Revision
2756 -
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Modified
Thu Nov 19 00:40:02 2009 UTC
(12 years, 6 months ago)
by
gross
Original Path:
trunk
missing file added.
Revision
2755 -
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Modified
Wed Nov 18 23:19:32 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
Reverted changes to Mesh_read from last commit. They break compilation with
MPI and seem unintentional.
Revision
2754 -
Directory Listing
Modified
Wed Nov 18 07:44:26 2009 UTC
(12 years, 6 months ago)
by
gross
Original Path:
trunk
tests for macro elements in saveVTK added.
Revision
2753 -
Directory Listing
Modified
Wed Nov 18 06:06:50 2009 UTC
(12 years, 6 months ago)
by
lgao
Original Path:
trunk
fix bugs in minGlobalDataPoint() and maxGlobalDataPoint()
Revision
2752 -
Directory Listing
Modified
Wed Nov 18 06:01:18 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed compilation error in mesh reader when using MPI.
Revision
2751 -
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Modified
Wed Nov 18 00:30:47 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
Removed stray forward declaration.
Revision
2750 -
Directory Listing
Modified
Tue Nov 17 23:39:20 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed some compilation errors with OpenMP introduced in last commit.
Revision
2749 -
Directory Listing
Modified
Tue Nov 17 07:34:16 2009 UTC
(12 years, 6 months ago)
by
gross
Original Path:
trunk
missing files.
Revision
2748 -
Directory Listing
Modified
Tue Nov 17 07:32:59 2009 UTC
(12 years, 6 months ago)
by
gross
Original Path:
trunk
Macro elements are implemented now. VTK writer for macro elements still needs testing.
Revision
2747 -
Directory Listing
Modified
Tue Nov 17 05:19:59 2009 UTC
(12 years, 6 months ago)
by
lgao
Original Path:
trunk
Minor rivision to minGlobalDataPoint()
Revision
2746 -
Directory Listing
Modified
Tue Nov 17 05:13:51 2009 UTC
(12 years, 6 months ago)
by
lgao
Original Path:
trunk
Fix the error in minGlobalDataPoint() and maxGlobalDataPoint() due to
the fact that the number of samples on one MPI rank could be 0. Therefore,
not every MPI rank has valid min/max data point.
Revision
2745 -
Directory Listing
Modified
Tue Nov 17 04:23:02 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Added getInfLocator and getSupLocator to pdetools.
This means if you want to use them, you will need to import them.
These methods return a locator to a point with the smallest/largest value.
Added resolve() and delay() to utils.
Now you can do things like:
d=delay(v)
..
..
z=resolve(d+1)
Revision
2744 -
Directory Listing
Modified
Mon Nov 16 23:45:55 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
SaveVTK: exponent could have 3 digits so reserve enough space.
Revision
2743 -
Directory Listing
Modified
Mon Nov 16 05:28:47 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
Corrected memory allocation size for tensors in saveVTK. Fixes issue 460.
Revision
2742 -
Directory Listing
Modified
Thu Nov 12 06:03:37 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Merging changes from the lapack branch.
The inverse() operation has been moved into c++. [No lazy support for this operation yet.]
Optional Lapack support has been added for matrices larger than 3x3.
service0 is set to use mkl_lapack.
Revision
2738 -
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Modified
Fri Nov 6 05:33:13 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Taipan and DataVector use size_type (currently long) internally to talk
about sizes.
[A lot more work needs to be done on this].
Exceptions now give nicer messages and output the problematic numbers.
Some minor doco errors fixed.
escript.util.mkDir
Now checks to see if the pathname already exists as a non-directory.
On suggestion from slanger it now calls makedirs.
Revision
2737 -
Directory Listing
Modified
Tue Nov 3 00:44:00 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
icc will now record compiler options in libraries.
escriptParams now has a pretty printer option for lazy expressions.
Revision
2736 -
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Modified
Mon Nov 2 04:15:27 2009 UTC
(12 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed a couple of typos.
Revision
2735 -
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Modified
Mon Nov 2 02:03:24 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed bug where calling minval() reintroduced laziness after it had been removed.
Revision
2734 -
Directory Listing
Modified
Fri Oct 30 05:39:48 2009 UTC
(12 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed bug in lazy maxval and minval
Revision
2733 -
Directory Listing
Modified
Mon Oct 26 02:05:11 2009 UTC
(12 years, 7 months ago)
by
caltinay
Original Path:
trunk
escriptreader: added debug flag to configure.ac
Revision
2732 -
Directory Listing
Modified
Mon Oct 26 01:11:31 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Fixed segfault in debug+omp tests.
Cause:
variable used in parallel section not declared shared.
Revision
2730 -
Directory Listing
Modified
Thu Oct 22 01:50:27 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
order member variable added to the tests.
Revision
2729 -
Directory Listing
Modified
Thu Oct 22 01:45:28 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
UMFPack and MPI added to guineapig options.
Defaults for omp and mpi removed from SConstruct.
Revision
2728 -
Directory Listing
Modified
Thu Oct 22 00:13:10 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
minor
Revision
2727 -
Directory Listing
Modified
Wed Oct 21 23:56:23 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Added guineapig options
Revision
2726 -
Directory Listing
Modified
Wed Oct 21 23:50:05 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
New diagonal dominancy based algorithm is added. The coarseneng strategy is changed.
Revision
2725 -
Directory Listing
Modified
Wed Oct 21 23:44:06 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
AMG unit tests are disabled for 2-nd order elements.
Revision
2724 -
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Modified
Sun Oct 18 23:50:18 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
And again
Revision
2723 -
Directory Listing
Modified
Sun Oct 18 23:44:37 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Use correct types for MPI op parameters
Revision
2722 -
Directory Listing
Modified
Fri Oct 16 06:45:01 2009 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk
First steps towards macro elements. at the monent a macro element is identical to its counterpart of 2nd order.
Revision
2721 -
Directory Listing
Modified
Fri Oct 16 05:40:12 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
minval and maxval are now lazy operations (they weren't before).
Whether or not Lsup, sup and inf resolve their arguments before computing answers is controlled by the escriptParam 'RESOLVE_COLLECTIVE'.
Note: integrate() still forces a resolve.
Added some unit tests for operations which weren't tested before.
Added deepcopy implementations for lazy operations which got missed somehow.
Revision
2720 -
Directory Listing
Modified
Wed Oct 14 23:43:21 2009 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk
missing modules added
Revision
2719 -
Directory Listing
Modified
Wed Oct 14 06:38:03 2009 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk
a new Stokes solver added
Revision
2718 -
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Modified
Wed Oct 14 04:03:27 2009 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk
syntax errors fixed.
Revision
2716 -
Directory Listing
Modified
Tue Oct 13 04:58:08 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Small mod - process C_Tensor??Operation on ExpandedData as a whole
sample rather than a datapoint at a time.
This is just to bring Non-Lazy into line with Lazy.
Revision
2715 -
Directory Listing
Modified
Sun Oct 11 23:29:56 2009 UTC
(12 years, 7 months ago)
by
lgao
Original Path:
trunk
change back to use Intel MPI (avoid the MPT+MKL problem).
Revision
2714 -
Directory Listing
Modified
Wed Oct 7 23:29:19 2009 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk
typo in check fixed.
Revision
2713 -
Directory Listing
Modified
Wed Oct 7 00:35:06 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Fixes for windows.
Copied from Thomas Poulet
Revision
2712 -
Directory Listing
Modified
Wed Oct 7 00:22:43 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
MKL made default direct solver for AMG
Revision
2711 -
Directory Listing
Modified
Tue Oct 6 04:43:41 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
Little restructuring for solving memory bug in MKL_free process and making sure LDU factorzation done only once.
Revision
2710 -
Directory Listing
Modified
Mon Oct 5 23:15:04 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Change to error output requested by Thomas Poulet
Revision
2709 -
Directory Listing
Modified
Mon Oct 5 06:11:58 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
Paso_MKL1 put back again
Revision
2708 -
Directory Listing
Modified
Mon Oct 5 05:59:08 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
The n_F==n condition with potentially uninitialized value is fixed.
Revision
2707 -
Directory Listing
Modified
Fri Oct 2 05:02:59 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
some unnecessary lines are removed
Revision
2706 -
Directory Listing
Modified
Fri Oct 2 02:15:04 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Perhaps this will stop the cookbook from hating me.
Revision
2705 -
Directory Listing
Modified
Thu Oct 1 23:21:10 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
Some openMP codes in AMG systems are removed for testing.
Revision
2704 -
Directory Listing
Modified
Thu Oct 1 05:38:33 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
some clarity in the notations REMOVED changes IN_SET
Revision
2703 -
Directory Listing
Modified
Thu Oct 1 01:22:36 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Added calls to MPI_Abort to the pythonMPI wrappers.
Now if an uncaught exception is raised on any of the nodes, the whole world should be brought down. I've tested this on a barrier and it works.
One consequence of this is that you should not call sys.exit(2) but we don't recommend using sys.exit anyway.
Revision
2702 -
Directory Listing
Modified
Wed Sep 30 23:54:17 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
UMFPACK is enabled for savanna
Revision
2701 -
Directory Listing
Modified
Wed Sep 30 23:21:08 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
MKL test lines are removed
Revision
2700 -
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Modified
Wed Sep 30 08:28:55 2009 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk
pycad test fixed.
Revision
2699 -
Directory Listing
Modified
Wed Sep 30 05:43:20 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
Direct solver switched to UMFPACK, till problem with MKL solved. When all unknows are eliminated then we switch to Jacobi preconditiner.
Revision
2698 -
Directory Listing
Modified
Wed Sep 30 01:46:31 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Removing extension from some image filenames
Revision
2697 -
Directory Listing
Modified
Wed Sep 30 01:29:22 2009 UTC
(12 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Trying to get cookbook scripts passing.
Split cblib in two to avoid importing pylab in scripts which
don't otheriwse need it.
Revision
2696 -
Directory Listing
Modified
Wed Sep 30 00:36:05 2009 UTC
(12 years, 7 months ago)
by
lgao
Original Path:
trunk
change service0_options.py to use MPT 1.24
Revision
2695 -
Directory Listing
Modified
Tue Sep 29 06:29:12 2009 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk
pycad passes on more infromation from gmsh now.
Revision
2694 -
Directory Listing
Modified
Tue Sep 29 06:00:44 2009 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk
some hint on how to access gmsh error messages added.
Revision
2693 -
Directory Listing
Modified
Tue Sep 29 05:47:45 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
sorry python Indentation Error, fixed
Revision
2692 -
Directory Listing
Modified
Tue Sep 29 05:35:31 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
minor typo
Revision
2691 -
Directory Listing
Modified
Tue Sep 29 05:30:27 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
Projector class had getSolverOptions(), but was returning null, so changed to return correct solver options.
Revision
2690 -
Directory Listing
Modified
Tue Sep 29 05:23:41 2009 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk
some description on gmsh reader added.
Revision
2689 -
Directory Listing
Modified
Tue Sep 29 05:22:51 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
getSolverOptionsDiv was returning Pressure options instead of Div equation options
Revision
2688 -
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Modified
Tue Sep 29 05:19:43 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
changes to default threshold values
Revision
2687 -
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Modified
Tue Sep 29 04:23:10 2009 UTC
(12 years, 7 months ago)
by
caltinay
Original Path:
trunk
libescriptreader: fixed a path problem when using autotools to build
Revision
2686 -
Directory Listing
Modified
Tue Sep 29 03:39:36 2009 UTC
(12 years, 7 months ago)
by
artak
Original Path:
trunk
changes the default thresold, bug fixes in RS coupling and extra checks added in Solver
Revision
2685 -
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Modified
Tue Sep 29 02:22:30 2009 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk
these files are not needed
Revision
2684 -
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Modified
Tue Sep 29 02:21:11 2009 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk
added missing file
Revision
2683 -
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Modified
Tue Sep 29 02:20:22 2009 UTC
(12 years, 7 months ago)
by
gross
Original Path:
trunk
documentation for pycad added.
Revision
2681 -
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Modified
Thu Sep 24 03:04:04 2009 UTC
(12 years, 8 months ago)
by
ahallam
Original Path:
trunk
proof reading and review of cookbook, minor changes only + updated depth profiles to cb from last week
Revision
2680 -
Directory Listing
Modified
Thu Sep 24 00:40:07 2009 UTC
(12 years, 8 months ago)
by
caltinay
Original Path:
trunk
Updated service0 options file to use Silo 4.7 on Savanna
Revision
2679 -
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Modified
Thu Sep 24 00:36:57 2009 UTC
(12 years, 8 months ago)
by
caltinay
Original Path:
trunk
Updated shake75 options file
Revision
2678 -
Directory Listing
Modified
Wed Sep 23 23:54:16 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Some fixes for compile errors for gcc_testing_version
Revision
2677 -
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Modified
Tue Sep 22 00:48:00 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Removed stuff in user guide about needing to make table larger to allow
boundary points.
The table interpolation is now OMP parallel.
Revision
2676 -
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Modified
Mon Sep 21 08:06:37 2009 UTC
(12 years, 8 months ago)
by
gross
Original Path:
trunk
FaultSystem: MaxValue and MinValue return now a Locator. This makes it possible to extract values of from other data objects at the location of the min/max value
Revision
2675 -
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Modified
Mon Sep 21 02:32:17 2009 UTC
(12 years, 8 months ago)
by
gross
Original Path:
trunk
getMinValue added to the fault system.
Revision
2674 -
Directory Listing
Modified
Mon Sep 21 00:37:18 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Base matplotlib tests on version number.
This will stop the Mac trying to run some tests it can't execute.
Revision
2673 -
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Modified
Fri Sep 18 05:33:10 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Some fixes to interpolation
Revision
2672 -
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Modified
Fri Sep 18 01:46:47 2009 UTC
(12 years, 8 months ago)
by
ahallam
Original Path:
trunk
Heat refraction updates : alex's downhole profiles
Revision
2671 -
Directory Listing
Modified
Thu Sep 17 06:37:22 2009 UTC
(12 years, 8 months ago)
by
gross
Original Path:
trunk
missing offset added in interpolation table
Revision
2670 -
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Modified
Thu Sep 17 06:17:57 2009 UTC
(12 years, 8 months ago)
by
artak
Original Path:
trunk
Bug that made MPI tests to fail is fixed.
Revision
2669 -
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Modified
Thu Sep 17 06:01:30 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Added a bunch of valgrind supressions. Hopefully this will make it more useful.
Asking for an offset on a DataConstant containing no samples no longer fails under debug builds.
I've disabled the sample and dataPoint bounds checks since they don't make sense on DataConstant.
Revision
2668 -
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Modified
Thu Sep 17 04:04:09 2009 UTC
(12 years, 8 months ago)
by
gross
Original Path:
trunk
some clarification in the table interpolation
Revision
2667 -
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Modified
Thu Sep 17 01:49:11 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Renamed the main cookbook tex file to match our convention.
Replaced doc/cookbook/figures/heatrefraction002contqu.pdf with
a version which is actually pdf. However it needs to be regnerated since
it it sideways.
The examples have had their copyright notices fixed (dates were too early).
sb2.py has been removed since it uses pyvisi.
scons will now build the cookbook as parts of a docs build.
Also in reposnse to :
scons cookbook_pdf
Revision
2666 -
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Modified
Thu Sep 17 00:10:00 2009 UTC
(12 years, 8 months ago)
by
artak
Original Path:
trunk
OpenMP bug fixed and more openMP code added for cutting blocks.
Revision
2665 -
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Modified
Wed Sep 16 02:56:02 2009 UTC
(12 years, 8 months ago)
by
gross
Original Path:
trunk
clarification in the fault depth vector
Revision
2664 -
Directory Listing
Modified
Wed Sep 16 01:06:50 2009 UTC
(12 years, 8 months ago)
by
artak
Original Path:
trunk
Extra check is added for AMG levels. If coursening proccess does not eliminate at least 30% from the fine Matrix then it does not make sense to continue to the next level.
Revision
2663 -
Directory Listing
Modified
Tue Sep 15 06:04:44 2009 UTC
(12 years, 8 months ago)
by
gross
Original Path:
trunk
finally there is a 3D version for the fault system class
Revision
2662 -
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Modified
Tue Sep 15 03:05:23 2009 UTC
(12 years, 8 months ago)
by
artak
Original Path:
trunk
Migrating to block_sizes greather than 3 made easy.
Revision
2661 -
Directory Listing
Modified
Fri Sep 11 00:59:59 2009 UTC
(12 years, 8 months ago)
by
artak
Original Path:
trunk
Finially unit tests for AMG preconditioner for single equations as well as for systems. Minor bug in AMG is also fixed
Revision
2660 -
Directory Listing
Modified
Thu Sep 10 04:26:39 2009 UTC
(12 years, 8 months ago)
by
artak
Original Path:
trunk
minor
Revision
2659 -
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Modified
Thu Sep 10 03:54:50 2009 UTC
(12 years, 8 months ago)
by
artak
Original Path:
trunk
first attempt of AMG on blocks
Revision
2658 -
Directory Listing
Modified
Thu Sep 10 02:58:44 2009 UTC
(12 years, 8 months ago)
by
ahallam
Original Path:
trunk
Updates to all files scripts to support MPI testing proceedure. Updates to cookbook, new section on functino spaces/domains (needs work). Finalising first 3 chapters for editing.
Revision
2657 -
Directory Listing
Modified
Thu Sep 10 00:58:19 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Fixed some spelling errors.
Added text about parallel vis.
Revision
2656 -
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Modified
Wed Sep 9 23:47:10 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Fixing doco compile bug
Revision
2655 -
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Modified
Tue Sep 8 23:31:32 2009 UTC
(12 years, 8 months ago)
by
gross
Original Path:
trunk
a comma is missing.
Revision
2654 -
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Modified
Tue Sep 8 07:11:12 2009 UTC
(12 years, 8 months ago)
by
gross
Original Path:
trunk
2D fault systems are now working. 3D still needs work.
Revision
2653 -
Directory Listing
Modified
Tue Sep 8 04:26:30 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Fix bug in maxGlobalDataPoint and minGlobalDataPoint.
They now give the correct answers and the datapoint ids returned are globally
correct.
Removed some #defines from before COW
Removed hasNoSamples() - I don't trust myself to use that properly let alone anybody else.
Revision
2652 -
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Modified
Mon Sep 7 05:04:45 2009 UTC
(12 years, 8 months ago)
by
artak
Original Path:
trunk
Paso_Pattern_coup changed to Paso_Pattern_YS for making clear that it refers to YAIR-SHAPIRA coarsenenig.
Revision
2651 -
Directory Listing
Modified
Mon Sep 7 03:39:45 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Fixed latex compile error.
Fixed some overful hboxes
Revision
2650 -
Directory Listing
Modified
Mon Sep 7 03:38:50 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Reducing the concentration of stupid.
Revision
2649 -
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Modified
Mon Sep 7 03:33:55 2009 UTC
(12 years, 8 months ago)
by
gross
Original Path:
trunk
Some small fixes in FaultSystem
Revision
2648 -
Directory Listing
Modified
Mon Sep 7 00:06:15 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
ecording some changes related to Anthony's cookbook.
These tests still do not run.
test_heatref.py is the current problem.
Current problems include:
undefined symbols
a dependence on X somehow.
I've already addressed the matplotlib X thing somewhere else.
Find and apply.
Revision
2647 -
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Modified
Fri Sep 4 05:25:25 2009 UTC
(12 years, 8 months ago)
by
gross
Original Path:
trunk
fault system add. There is still an example for the usage missing.
Revision
2646 -
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Modified
Fri Sep 4 00:13:00 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Unit tests and user doco for interpolation and saveCSV
Revision
2645 -
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Modified
Thu Sep 3 02:20:33 2009 UTC
(12 years, 8 months ago)
by
ahallam
Original Path:
trunk
More revisions to cookbook, fixed cblib.py for Scons, new figures.
Revision
2644 -
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Modified
Wed Sep 2 04:14:03 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Add unit tests for saveDataCSV which should be ready for use now.
Keyword args are now output in sorted order.
Removed some unneeded functions.
Revision
2643 -
Directory Listing
Modified
Wed Sep 2 00:10:00 2009 UTC
(12 years, 8 months ago)
by
artak
Original Path:
trunk
Saving sparse matrix used before for debuging is removed
Revision
2642 -
Directory Listing
Modified
Tue Sep 1 04:15:50 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
pre cleanup
Revision
2641 -
Directory Listing
Modified
Mon Aug 31 07:41:49 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Fixed some of my stupids related to MPI compile errors.
Revision
2640 -
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Modified
Mon Aug 31 06:22:10 2009 UTC
(12 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Adding getMPIComm
Revision
2637 -
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Modified
Fri Aug 28 04:12:24 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
saveDataCSV looks good but does not do MPI yet.
Also not unit tested.
Revision
2636 -
Directory Listing
Modified
Thu Aug 27 05:26:42 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Disabling cookbook example checks until we can fix them.
Revision
2635 -
Directory Listing
Modified
Thu Aug 27 04:54:41 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
A bunch of changes related to saveDataCSV.
[Not completed or unit tested yet]
Added saveDataCSV to util.py
AbstractDomain (and MeshAdapter) have a commonFunctionSpace method to
take a group of FunctionSpaces and return something they can all be interpolated to.
Added pointToStream() in DataTypes to help print points.
added actsConstant() to data - required because DataConstant doesn't store samples the same way other Data do.
Revision
2634 -
Directory Listing
Modified
Thu Aug 27 04:03:32 2009 UTC
(12 years, 9 months ago)
by
ahallam
Original Path:
trunk
Updates to cookbook. Updates to scripts. Updates to figures. Working examples added to SCons. Data folder structure included minus data. More folder rejigging.
Revision
2633 -
Directory Listing
Modified
Wed Aug 26 22:21:52 2009 UTC
(12 years, 9 months ago)
by
ahallam
Original Path:
trunk
Sorry second regigging
Revision
2632 -
Directory Listing
Modified
Wed Aug 26 22:18:19 2009 UTC
(12 years, 9 months ago)
by
ahallam
Original Path:
trunk
Regigger of cookbook directory structure. Examlples->examples/cookbook TEXT->doc/cookbook Figures-> doc/cookbook/figures
Revision
2629 -
Directory Listing
Modified
Tue Aug 25 06:39:26 2009 UTC
(12 years, 9 months ago)
by
trankine
Original Path:
trunk
Changes to work on Windows with boost 1.39.0. Using command separator &. Note: there are still 2 CheckFunc that fail (but can be bypassed as the rest of the build works).
Revision
2628 -
Directory Listing
Modified
Tue Aug 25 03:50:00 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Fixed linkage on getTestDomainFunctionSpace.
added Data.interpolateTable to perform 2D interpolation.
It needs better unit tests though.
Revision
2627 -
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Modified
Mon Aug 24 01:57:34 2009 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk
some bugs in pycad fixed.
Revision
2626 -
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Modified
Mon Aug 24 00:48:31 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Making arg0 and arg params in C_GeneralTensorProduct non-optional.
[The using the default args caused an exception.]
Revision
2625 -
Directory Listing
Modified
Fri Aug 21 06:30:25 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Merging changes from new doco branch.
All docstrings are now in reStructured text.
A few email addresses have been fixes as well.
Revision
2620 -
Directory Listing
Modified
Thu Aug 20 06:24:00 2009 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk
some small additions to pycad to make life a bit easier.
Revision
2608 -
Directory Listing
Modified
Tue Aug 18 01:25:18 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Updating Lutz' email
Revision
2607 -
Directory Listing
Modified
Tue Aug 18 01:02:56 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Added getMPIWorldSum function to the esys.escript module.
This function takes an integer from each member of the MPIWorld.
This will hopefully address mantis issue 359
Added unit tests for most of the c++ free functions in the module.
Revision
2606 -
Directory Listing
Modified
Thu Aug 13 04:32:23 2009 UTC
(12 years, 9 months ago)
by
ahallam
Original Path:
trunk
Updates to first chapter in cookbook -> approaching completion.
New figures added for model descriptions.
Scripts updated to use pylab/matplotlib and movie making scripts added for *.avi creation.
Still to finalise in chapter 1
- twodheatdiff model of intrusion
-contouring
- heat refraction scripts and begin cookbook sections
- pycad discussion
- steady state pde discussion
- quiver plot discussion
Revision
2605 -
Directory Listing
Modified
Wed Aug 12 22:30:47 2009 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk
some changes to the cook book
Revision
2604 -
Directory Listing
Modified
Wed Aug 12 01:21:46 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
The prefix option for building escript now works correctly.
This fixes mantis issue #362.
Revision
2603 -
Directory Listing
Modified
Wed Aug 12 00:44:35 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Compute nodes will now read the correct options file and use the correct compiler.
I have added env_export to the service0 options file.
Use this if there are variables from the calling environment which need to be passed through scons. (In this case the INTEL_LICENSE_FILE variable).
There are still some issues with icpc linking.
Revision
2602 -
Directory Listing
Modified
Tue Aug 11 00:38:42 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Merging changes made for release3.0 back to trunk.
Revision
2600 -
Directory Listing
Modified
Fri Aug 7 04:47:49 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Using the 'agg' backend in matplotlib to avoid reference to the X Display.
Revision
2599 -
Directory Listing
Modified
Fri Aug 7 00:16:02 2009 UTC
(12 years, 9 months ago)
by
caltinay
Original Path:
trunk
saveESD: added option to save mesh at each timestep if required.
Revision
2598 -
Directory Listing
Modified
Thu Aug 6 03:47:56 2009 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk
small fix in ReversedCurve clas
Revision
2597 -
Directory Listing
Modified
Thu Aug 6 03:30:09 2009 UTC
(12 years, 9 months ago)
by
ahallam
Original Path:
trunk
Updates to: cookbook documentation; heat refraction problems; mencoder investigation for *.png animation
Revision
2596 -
Directory Listing
Modified
Thu Aug 6 03:09:03 2009 UTC
(12 years, 9 months ago)
by
lgao
Original Path:
trunk
Add new diagnostic information: "net time" (the execution time of solver, excluding the setup time for solver and the execution time of preconditioner)
Revision
2595 -
Directory Listing
Modified
Thu Aug 6 00:49:09 2009 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk
there was wrong test which triggered an excpetion in some cases where things were actually right
Revision
2594 -
Directory Listing
Modified
Thu Aug 6 00:47:48 2009 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk
change to the default value for toListOfTuples
Revision
2592 -
Directory Listing
Modified
Thu Aug 6 00:43:19 2009 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk
additional tests for the Locator
Revision
2588 -
Directory Listing
Modified
Wed Aug 5 22:42:36 2009 UTC
(12 years, 9 months ago)
by
ahallam
Original Path:
trunk
Heat diffraction initial committal 2 weeks work.
Revision
2583 -
Directory Listing
Modified
Wed Aug 5 01:49:56 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Minor fixes
Revision
2581 -
Directory Listing
Modified
Wed Aug 5 01:11:33 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Fixed unit test for missing matplotlib case.
Revision
2580 -
Directory Listing
Modified
Tue Aug 4 08:24:12 2009 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk
another example for the usage of matplot lib added to users guide.
Revision
2578 -
Directory Listing
Modified
Tue Aug 4 04:05:36 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Fixed problem with unit tests
Revision
2575 -
Directory Listing
Modified
Mon Aug 3 23:38:33 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Fixed some grammar note about Lenny not working.
Revision
2574 -
Directory Listing
Modified
Mon Aug 3 09:09:20 2009 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk
matplotlib description added to usersguide
Revision
2573 -
Directory Listing
Modified
Mon Aug 3 04:30:09 2009 UTC
(12 years, 9 months ago)
by
gross
Original Path:
trunk
some more fixes on solver options.
Revision
2568 -
Directory Listing
Modified
Fri Jul 31 05:37:41 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Updated install guide to include the correct version of python.
Updated Mac build instructions not to use numarray or frameworks.
Removed (commented out) references to MacPorts in the Mac instructions.
- These need to be updated and Artak isn't here.
Removed (commented out) references to windows in the install guide.
CSIRO won't have a windows release ready yet.
Revision
2567 -
Directory Listing
Modified
Fri Jul 31 01:17:37 2009 UTC
(12 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Added example options file for Mac
Revision
2566 -
Directory Listing
Modified
Wed Jul 29 01:39:16 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk
AMG on systems not supported yet exeption is added
Revision
2565 -
Directory Listing
Modified
Tue Jul 28 05:50:15 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk
stopping criteria is slightly changed.
Revision
2564 -
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Modified
Tue Jul 28 04:46:38 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
reduced PDE solutions added to topography
Revision
2563 -
Directory Listing
Modified
Tue Jul 28 03:50:45 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
reengineered version of the mountain class so it becomes easier to use for the convection code
Revision
2562 -
Directory Listing
Modified
Tue Jul 28 01:25:12 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk
inplace bugs are fixed
Revision
2561 -
Directory Listing
Modified
Mon Jul 27 07:38:45 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
small bug in the calculation of the errors fixed.
Revision
2560 -
Directory Listing
Modified
Mon Jul 27 07:38:00 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
a test for unique PropertySet name added.
Revision
2559 -
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Modified
Mon Jul 27 05:19:21 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk
typo: MaxIter changed IterMax
Revision
2558 -
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Modified
Mon Jul 27 05:03:32 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
a table added showing the available solver options for finley paso.
Revision
2557 -
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Modified
Mon Jul 27 04:46:37 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk
minor comments changed
Revision
2556 -
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Modified
Mon Jul 27 02:05:20 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk
memory leack fixed
Revision
2555 -
Directory Listing
Modified
Mon Jul 27 01:50:16 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk
Pattern_free for Aggregiation coarsening is added.
Revision
2554 -
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Modified
Fri Jul 24 05:38:54 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
bug with MKL call fixed.
Revision
2553 -
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Modified
Fri Jul 24 01:30:14 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Added another citation.
Revision
2552 -
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Modified
Fri Jul 24 00:42:10 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk
openmp change
Revision
2551 -
Directory Listing
Modified
Thu Jul 23 09:19:15 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
a problem with the sparse matrix unrolling fixed.
Revision
2550 -
Directory Listing
Modified
Tue Jul 21 03:36:13 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
AMG throws an error now if block size not 1
Revision
2549 -
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Modified
Mon Jul 20 06:43:47 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Remainder of copyright date fixes
Revision
2548 -
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Modified
Mon Jul 20 06:20:06 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Updating copyright notices
Revision
2547 -
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Modified
Mon Jul 20 05:50:46 2009 UTC
(12 years, 10 months ago)
by
caltinay
Original Path:
trunk
More work on the install guide.
Revision
2546 -
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Modified
Mon Jul 20 05:35:08 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Updated builddeb script to include the architecture in the package filename.
(the architecture is also written into the control file).
Modified dependencies to not include VTK.
Added python-matplotlib as a "Recomends" dependency.
This means we can build 64bit debs now.
Revision
2545 -
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Modified
Mon Jul 20 04:54:57 2009 UTC
(12 years, 10 months ago)
by
caltinay
Original Path:
trunk
Install guide: fixed a minor typo
Revision
2544 -
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Modified
Mon Jul 20 04:50:38 2009 UTC
(12 years, 10 months ago)
by
caltinay
Original Path:
trunk
Enable building doxygen docs for the escriptreader library.
Revision
2543 -
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Modified
Mon Jul 20 04:38:21 2009 UTC
(12 years, 10 months ago)
by
caltinay
Original Path:
trunk
Install guide: fixed latex compilation due to incompatible hyperref package.
Revision
2542 -
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Modified
Mon Jul 20 04:18:27 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Importing esys.pyvisi now generates a warning.
Revision
2541 -
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Modified
Mon Jul 20 00:25:55 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Added matplotlib to the stand-alone path.
Removed VTK
Revision
2540 -
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Modified
Mon Jul 20 00:09:55 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Deprecating pyvisi in the user guide.
Revision
2539 -
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Modified
Sat Jul 18 02:47:34 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk
the line added in RS for symetricity brings factorization failure in heatedblock example
Revision
2538 -
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Modified
Fri Jul 17 06:24:15 2009 UTC
(12 years, 10 months ago)
by
caltinay
Original Path:
trunk
Install guide: Reworked introduction and enabled hyperref package
Revision
2537 -
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Modified
Fri Jul 17 05:50:35 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Operation_make_pyvisi_go_away: Stage 1 of PI
Removing pyvisi example files.
Revision
2536 -
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Modified
Thu Jul 16 23:53:07 2009 UTC
(12 years, 10 months ago)
by
caltinay
Original Path:
trunk
installguide: Fixed typos, minor semantics, repetitions and whitespace issues.
Revision
2535 -
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Modified
Thu Jul 16 23:39:58 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
LinearPDE is now updating stiffness matrix and right hand side even only geometry is modified. fix for 333
Revision
2534 -
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Modified
Thu Jul 16 06:49:19 2009 UTC
(12 years, 10 months ago)
by
caltinay
Original Path:
trunk
Changed examples, tests and tutorials to save VTK files as .vtu instead .xml.
Visit doesn't know what to do with xml's and vtu is the proper extension
anyway.
Revision
2533 -
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Modified
Wed Jul 15 05:57:01 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
finley delivers now a status identifier of the mesh.
Revision
2532 -
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Modified
Fri Jul 10 01:13:44 2009 UTC
(12 years, 10 months ago)
by
caltinay
Original Path:
trunk
libescriptreader: fixed a typo in configure script and added missing lib
to Makefile.
Revision
2531 -
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Modified
Thu Jul 9 23:56:57 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Setting always build on the api_epydoc target as a quick work around
Revision
2530 -
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Modified
Thu Jul 9 06:08:44 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Some changes relating to install from source.
Revision
2529 -
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Modified
Thu Jul 9 06:06:35 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Some changes to the install guide.
More work to do.
Revision
2528 -
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Modified
Wed Jul 8 23:27:49 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Added stand-alone example options file for install instructions.
Revision
2527 -
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Modified
Wed Jul 8 07:04:35 2009 UTC
(12 years, 10 months ago)
by
lgao
Original Path:
trunk
endof line added.
Revision
2526 -
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Modified
Wed Jul 8 05:52:06 2009 UTC
(12 years, 10 months ago)
by
caltinay
Original Path:
trunk
util: Updated saveESD to allow saving of time series. Combined with an update
of the visit plugin this fixes issue 325.
Revision
2525 -
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Modified
Wed Jul 8 03:41:15 2009 UTC
(12 years, 10 months ago)
by
caltinay
Original Path:
trunk
libescriptreader: Added 'timestep increment' option to allow time series files
to be named like file.0, file.10, file.20 etc.
Revision
2524 -
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Modified
Wed Jul 8 00:39:26 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk
Minimum size of the coarsest level matrix option added to solver options
Revision
2523 -
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Modified
Wed Jul 8 00:07:36 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Fixed bug in MPI form of mkDir
Revision
2522 -
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Modified
Tue Jul 7 06:17:47 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Split test_util_spatial_functions.py into three python files (it had three classes in it).
This reduces memory required to compile down to about 600Mb each as opposed to >1Gb.
This should not affect the tests performed.
Revision
2521 -
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Modified
Tue Jul 7 00:08:58 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Modified Lazy so that resolving a single sample uses the node cache method.
Fixed some doxygen problems.
Revision
2520 -
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Modified
Mon Jul 6 03:13:11 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
trunk
AMG now takes as an input Paso_options for selecting coarsenening algorithm and treshold variable.
Revision
2519 -
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Modified
Mon Jul 6 00:43:08 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Correcting some doxygen errors
Revision
2518 -
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Modified
Fri Jul 3 07:43:11 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
bug in setNewX fixed: now it is made sure that the FunctionSpace of the new coordinates is correct.
Revision
2517 -
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Modified
Fri Jul 3 05:27:45 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Fixed bug in Locator
Revision
2516 -
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Modified
Fri Jul 3 02:51:05 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
files are not needed anymore.
Revision
2515 -
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Modified
Fri Jul 3 00:59:05 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
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missing files for documentation
Revision
2514 -
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Modified
Fri Jul 3 00:57:45 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Fixed compile warning on Mac
Revision
2513 -
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Modified
Thu Jul 2 08:42:11 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
some fixes in wave.py example
Revision
2512 -
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Modified
Thu Jul 2 05:34:14 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Made the warnings against linking gomp a bit more detailed.
Commented out gomp from the linux sample.
Revision
2511 -
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Modified
Thu Jul 2 05:16:19 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
more openmp
Revision
2510 -
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Modified
Thu Jul 2 05:15:59 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
trunk
fix for INTELMPI
Revision
2509 -
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Modified
Thu Jul 2 04:51:51 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
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Now one can choose coarsening method from python for AMG. Some commented lines are removed.
Revision
2508 -
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Modified
Thu Jul 2 04:33:25 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
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Ensured that example files are copied with build_py_tests rather than py_tests.
This means that:
build_full
will set up all the files ready for utest.sh
Revision
2507 -
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Modified
Thu Jul 2 03:14:35 2009 UTC
(12 years, 10 months ago)
by
artak
Original Path:
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some profiling tools added
Revision
2506 -
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Modified
Thu Jul 2 01:23:30 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
trunk
Fix to allow binary unit tests to run.
Note: I have only fixed the non-windows systems and I don't know if they
have the same problem.
Diagnosis of the utest problems continues.
Revision
2505 -
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Modified
Thu Jul 2 00:46:53 2009 UTC
(12 years, 10 months ago)
by
lgao
Original Path:
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adding config file for Lin's machine
Revision
2504 -
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Modified
Wed Jul 1 07:27:17 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
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First stage of fix to utest.sh
Revision
2503 -
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Modified
Wed Jul 1 05:05:08 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
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Fixing doc build so examples tar and zip are built properly.
Fixed image filenames in user guide.
Please do not put extensions on image files.
Revision
2502 -
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Modified
Tue Jun 30 05:49:22 2009 UTC
(12 years, 10 months ago)
by
gross
Original Path:
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tests for examples added. utest is not working yet.
Revision
2501 -
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Modified
Tue Jun 30 04:43:01 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
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Caching now works.
Number of levels and nodes permitted in a lazy expression has increased to 70 and 15000.
Revision
2500 -
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Modified
Tue Jun 30 00:42:38 2009 UTC
(12 years, 10 months ago)
by
jfenwick
Original Path:
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Experimental per node cache for lazy evaluation is now available via the
LAZY_NODE_STORAGE #define
It's a bit slower and larger for small problems but a bit faster and
smaller for large (drucker prager) problems.
Revision
2499 -
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Modified
Mon Jun 29 04:31:00 2009 UTC
(12 years, 11 months ago)
by
gross
Original Path:
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new stand
Revision
2498 -
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Modified
Mon Jun 29 04:25:23 2009 UTC
(12 years, 11 months ago)
by
gross
Original Path:
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new function MaskFromTag
Revision
2497 -
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Modified
Mon Jun 29 00:04:45 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Calling resolve now replaces resolved expression with an identity node.
Revision
2496 -
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Modified
Fri Jun 26 06:09:47 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Added lazy version of swapaxes operation.
Revision
2495 -
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Modified
Fri Jun 26 03:39:21 2009 UTC
(12 years, 11 months ago)
by
ahallam
Original Path:
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Many revisions to Head Diff Documentation, One grammar correction to user guide.
Revision
2494 -
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Thu Jun 25 05:00:57 2009 UTC
(12 years, 11 months ago)
by
ahallam
Original Path:
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Many updates to onedheatdiff in example and documentation. Still in need of some TLC however.
Revision
2493 -
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Modified
Thu Jun 25 02:58:52 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Taipan now prints an error message if new[] throws.
Note, the exception is rethrown after the message is printed.
Revision
2492 -
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Wed Jun 24 01:28:57 2009 UTC
(12 years, 11 months ago)
by
gross
Original Path:
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MPI_DOUBLE changed to MPI_INT as lowProc is int
Revision
2491 -
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Wed Jun 24 00:03:08 2009 UTC
(12 years, 11 months ago)
by
gross
Original Path:
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some modifications to the OPENMPI launcher.
Revision
2490 -
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Tue Jun 23 06:02:26 2009 UTC
(12 years, 11 months ago)
by
artak
Original Path:
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adjusting to new Paso_Options.
Revision
2489 -
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Modified
Tue Jun 23 06:00:25 2009 UTC
(12 years, 11 months ago)
by
artak
Original Path:
trunk
void *solver; is added to Paso_SpaseMatrix struct. Paso_MKL will need this.
Revision
2488 -
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Modified
Tue Jun 23 05:56:33 2009 UTC
(12 years, 11 months ago)
by
artak
Original Path:
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Paso_MKL1 supports Paso_SparseMatrix type with offset1
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2487 -
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Modified
Tue Jun 23 04:26:07 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Fixed const-ness on some return values.
Null-Domain now reports tag one as being in use.
Revision
2486 -
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Modified
Tue Jun 23 03:38:54 2009 UTC
(12 years, 11 months ago)
by
gross
Original Path:
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a bit more info are printed for the DarcyFlux now.
Revision
2485 -
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Mon Jun 22 07:27:31 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Added unit test file.
Revision
2484 -
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Modified
Mon Jun 22 04:22:19 2009 UTC
(12 years, 11 months ago)
by
gross
Original Path:
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numarray removed from docu; Locator revised.
Revision
2483 -
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Mon Jun 22 03:33:43 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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And Joel closes the barn door.
Revision
2482 -
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Fri Jun 19 05:56:20 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Added run_data_access.py to unit tests - tests things like toListOfTuples.
Corrected some doco comments.
Added TestDomain class to escript.
This should allow more testing without resorting to finley.
Revision
2481 -
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Fri Jun 19 04:29:06 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Corrected a comment and fixed more bugs in the bulk copyFromArrayToOffset method.
Revision
2480 -
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Fri Jun 19 03:35:14 2009 UTC
(12 years, 11 months ago)
by
gross
Original Path:
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test fixed.
Revision
2479 -
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Modified
Thu Jun 18 06:50:37 2009 UTC
(12 years, 11 months ago)
by
gross
Original Path:
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paso returns now some diagnostics. SCSL has been removed.
Revision
2478 -
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Modified
Thu Jun 18 06:20:57 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Fixed bug when creating scalar expanded data.
Fixed some comments and moved a variable into anonymous namespace
Revision
2477 -
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Modified
Wed Jun 17 06:22:15 2009 UTC
(12 years, 11 months ago)
by
gross
Original Path:
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modification to the cookbook
Revision
2476 -
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Modified
Wed Jun 17 04:42:13 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Added maxGlobalDataPoint.
Not currently unit tested.
Revision
2475 -
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Modified
Wed Jun 17 01:48:46 2009 UTC
(12 years, 11 months ago)
by
artak
Original Path:
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AMG now takes into account new SolverOptions class, namely one can select coarsening algorithms from python. Not all options are included into AMG, this will be implemented later on.
Revision
2474 -
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Modified
Tue Jun 16 06:32:15 2009 UTC
(12 years, 11 months ago)
by
gross
Original Path:
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linearPDEs has is now using the SolverOptions class to talk to PASO
Revision
2473 -
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Modified
Mon Jun 15 02:21:07 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Change logging functions so I don't get confused about what they do.
Added parameter to name the log file if called directly.
Revision
2472 -
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Modified
Thu Jun 11 23:33:47 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Added new params to control auto resolving for lazy data
Revision
2471 -
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Modified
Thu Jun 11 23:33:06 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Fixed extract of ndarray from xml to properly return booleans.
Modified some strings which had numarray:: in them
Revision
2470 -
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Modified
Thu Jun 11 08:32:32 2009 UTC
(12 years, 11 months ago)
by
gross
Original Path:
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SolverOption class added. It is not linked with anything.
Revision
2469 -
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Modified
Thu Jun 11 04:52:14 2009 UTC
(12 years, 11 months ago)
by
ahallam
Original Path:
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Week 11: Close to finishing wave equation, looking at adding friction to wave equation.
Revision
2468 -
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Modified
Thu Jun 11 02:55:51 2009 UTC
(12 years, 11 months ago)
by
gross
Original Path:
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some more work toward numpy
Revision
2467 -
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Modified
Tue Jun 9 23:12:04 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Fixed a missing file.
Revision
2466 -
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Modified
Tue Jun 9 05:02:56 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Fixed build from source instructions for linux to include offscreen rendering by default!
Revision
2465 -
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Modified
Tue Jun 9 05:01:36 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Changed the default behaviour of Data::toListOfTuples() so that scalars are returned in tuples.
This is to match the behaviour of getTupleForDataPoint.
Revision
2464 -
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Modified
Tue Jun 9 04:14:07 2009 UTC
(12 years, 11 months ago)
by
artak
Original Path:
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updated to use openmpi
Revision
2463 -
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Modified
Tue Jun 9 03:51:23 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Added an svn-ignore, added changes and references section to user guide.
Revision
2462 -
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Modified
Fri Jun 5 06:04:01 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Modified wrapper script to correctly point at numpy in standalone builds.
Updated build from source doco for linux to take numpy into account.
Also removed backticks in favour of $() - it should be the same but latex won't eat them
Revision
2461 -
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Modified
Fri Jun 5 05:06:31 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Trying to presize a list to reduce runtime of toListOfTuples
Revision
2460 -
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Modified
Fri Jun 5 05:04:45 2009 UTC
(12 years, 11 months ago)
by
ahallam
Original Path:
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Week 10:
Continued work on wave equation and tutorial write up.
Revision
2459 -
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Modified
Thu Jun 4 06:17:54 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Removed some commented out code.
Added toListOfTuples to the DataObject.
Revision
2458 -
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Modified
Wed Jun 3 06:18:21 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Various numarray erasures
Revision
2456 -
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Modified
Wed Jun 3 03:54:25 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
trunk
Switching savanna scons to use python-2.6.2 and boost-1.39
Revision
2455 -
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Modified
Wed Jun 3 03:29:07 2009 UTC
(12 years, 11 months ago)
by
jfenwick
Original Path:
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Merging changes from numpy branch.
Revision
2450 -
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Modified
Tue Jun 2 01:22:11 2009 UTC
(12 years, 11 months ago)
by
artak
Original Path:
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First version of 'greedy' algorithm for Ruge Stuben and Aggregiation.
Revision
2448 -
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Modified
Fri May 29 04:47:48 2009 UTC
(13 years ago)
by
ahallam
Original Path:
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Week 9: implemented cosine taper for wave function, need to work on direct method without lumping, wave propagation velocity is still not correct
Revision
2446 -
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Modified
Fri May 29 04:24:01 2009 UTC
(13 years ago)
by
gross
Original Path:
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same adjustment of nameing
Revision
2445 -
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Modified
Fri May 29 03:23:25 2009 UTC
(13 years ago)
by
gross
Original Path:
trunk
some improvement on convection which ios now working again
Revision
2443 -
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Modified
Fri May 29 01:44:22 2009 UTC
(13 years ago)
by
ahallam
Original Path:
trunk
Fixing some things
Revision
2442 -
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Modified
Fri May 29 00:39:44 2009 UTC
(13 years ago)
by
artak
Original Path:
trunk
Some bugs are fixed.
Revision
2440 -
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Modified
Wed May 27 08:45:55 2009 UTC
(13 years ago)
by
gross
Original Path:
trunk
convection works now again.
Revision
2439 -
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Modified
Tue May 26 04:34:21 2009 UTC
(13 years ago)
by
artak
Original Path:
trunk
AMG now works with blocksize 3. Logical block sizes replaced with real block size before starting AMG. But this happens only when we use AMG as a preconditioner.
Revision
2438 -
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Modified
Tue May 26 02:26:52 2009 UTC
(13 years ago)
by
gross
Original Path:
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new version of power law (blame Hans)
Revision
2436 -
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Modified
Mon May 25 05:05:00 2009 UTC
(13 years ago)
by
jfenwick
Original Path:
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A fix for escript not compiling on boost 1.39.
Revision
2434 -
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Modified
Thu May 21 07:59:53 2009 UTC
(13 years ago)
by
ahallam
Original Path:
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Week 8: Still working on seismic wave propagation. Need to come up with a smooth source function next week. All TEXT files up to date.
Revision
2433 -
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Modified
Wed May 20 08:43:43 2009 UTC
(13 years ago)
by
gross
Original Path:
trunk
some documentation on power law added
Revision
2432 -
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Modified
Wed May 20 06:06:20 2009 UTC
(13 years ago)
by
gross
Original Path:
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power law and incompressible flow is running now
Revision
2431 -
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Modified
Wed May 20 03:39:57 2009 UTC
(13 years ago)
by
jfenwick
Original Path:
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Added at the request of Dian.
Revision
2430 -
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Modified
Wed May 20 03:20:57 2009 UTC
(13 years ago)
by
jfenwick
Original Path:
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Use Variables class instead of Options in scons versions which support
it.
Revision
2429 -
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Modified
Tue May 19 10:04:54 2009 UTC
(13 years ago)
by
gross
Original Path:
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pycad allows noe to set the number of elements per line and the generation of quadrilateral elements over serfaces.
Revision
2428 -
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Modified
Tue May 19 04:04:11 2009 UTC
(13 years ago)
by
gross
Original Path:
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problem for python2.4 fixed: IOError has no attribute message.
Revision
2427 -
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Modified
Fri May 15 04:29:01 2009 UTC
(13 years ago)
by
ahallam
Original Path:
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Week 7: Work done on wave problem.
Revision
2426 -
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Modified
Fri May 15 04:28:31 2009 UTC
(13 years ago)
by
ahallam
Original Path:
trunk
Week 7: Work done on wave problem.
Revision
2425 -
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Modified
Thu May 14 09:06:35 2009 UTC
(13 years ago)
by
gross
Original Path:
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bug in getListOfTags fixed and some tested added
Revision
2424 -
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Modified
Thu May 14 05:15:47 2009 UTC
(13 years ago)
by
gross
Original Path:
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small bug fixed.
Revision
2423 -
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Modified
Thu May 14 05:02:20 2009 UTC
(13 years ago)
by
gross
Original Path:
trunk
* handling LD_LIBRARY_PATH for Windows (that only uses PATH)
* passing PATH env var in mpi call for Windows
Revision
2422 -
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Modified
Thu May 14 03:17:28 2009 UTC
(13 years ago)
by
gross
Original Path:
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bug in testing saveVTK fixed
Revision
2421 -
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Modified
Thu May 14 02:29:06 2009 UTC
(13 years ago)
by
gross
Original Path:
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vtk writer supports now meta data and meta data schema
Revision
2420 -
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Modified
Thu May 14 02:28:58 2009 UTC
(13 years ago)
by
gross
Original Path:
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vtk writer supports now meta data and meta data schema
Revision
2419 -
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Modified
Thu May 14 01:56:18 2009 UTC
(13 years ago)
by
jfenwick
Original Path:
trunk
Use os.path.join instead of os.sep in tests
If you can read this message it means svn commit mails are working again.
... Or you are looking at the logs
Revision
2418 -
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Modified
Wed May 13 08:36:04 2009 UTC
(13 years ago)
by
gross
Original Path:
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redirect stdout to NULL instead of /dev/null for Windows
Revision
2417 -
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Modified
Wed May 13 08:18:47 2009 UTC
(13 years ago)
by
gross
Original Path:
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some remarks on load and dump added to the users guide.
Revision
2416 -
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Modified
Wed May 13 06:03:59 2009 UTC
(13 years ago)
by
gross
Original Path:
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* fix Windows MPI case: export system variables
* define ESCRIPT_NUM_PROC and ESCRIPT_NUM_NODES
* cleanup using os.path.join()
Revision
2415 -
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Modified
Wed May 13 02:48:39 2009 UTC
(13 years ago)
by
gross
Original Path:
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FileWriter added: this class takes care of writing data which are global in MPI to a file. It is recommended to use this class rather then the build in open as it takes care of the case of many processors.
Revision
2414 -
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Modified
Tue May 12 03:33:49 2009 UTC
(13 years ago)
by
gross
Original Path:
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added flags (commented out) to compile MPI version on Windows (Visual Studio 2003) using MPICH2
Revision
2413 -
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Modified
Tue May 12 01:26:20 2009 UTC
(13 years ago)
by
artak
Original Path:
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There was a bug in computing logical_block_size. It was always returning 0.
Revision
2412 -
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Modified
Fri May 8 04:27:17 2009 UTC
(13 years ago)
by
jfenwick
Original Path:
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Clean up cookbook-
Cleaned up the svn:ignore
removed some latex intermediate files
Revision
2411 -
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Modified
Fri May 8 03:13:15 2009 UTC
(13 years ago)
by
ahallam
Original Path:
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Week 6 I think?? Started work on 2d wave solution, want to change from verlet according to lutz. Have semi finished heat diffusion but is ready for review and further modification in the future. Added new sections to first chapter, may or may not be needed but added as a reminder anyway.
Revision
2409 -
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Modified
Tue May 5 06:22:11 2009 UTC
(13 years ago)
by
jfenwick
Original Path:
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bin/escript is now under version control.
The wrapper template is no longer used.
Extraneous output doc removed from scons during build.
note: finleypython is no longer built (it was deprecated anyway).
Revision
2405 -
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Modified
Wed Apr 29 23:57:38 2009 UTC
(13 years ago)
by
jfenwick
Original Path:
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Another attempt at building the doco.
--transform is not supported by savanna's tar
Revision
2404 -
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Modified
Wed Apr 29 06:53:36 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
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documentation for units added.
Revision
2403 -
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Modified
Wed Apr 29 06:08:18 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
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units support Celsius, Farenheit and kelvin now
Revision
2402 -
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Modified
Wed Apr 29 06:02:21 2009 UTC
(13 years, 1 month ago)
by
jfenwick
Original Path:
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Fixing the build of example tar and zip files so they don't have full
paths.
Revision
2401 -
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Modified
Wed Apr 29 04:23:07 2009 UTC
(13 years, 1 month ago)
by
ahallam
Original Path:
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End Week 5:
Renamed *.tex files to more logical, changed to chapter format as HEAT_DIFFUSION.tex
Editted and Reviewed text portion and some python scripts for heat diffusion.
Looking to push for finalisation on heat diffusion in the next couple of week to begin next modelling problem/Chapter.
Revision
2399 -
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Tue Apr 28 12:04:34 2009 UTC
(13 years, 1 month ago)
by
gross
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some improvements on units
Revision
2398 -
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Modified
Tue Apr 28 04:41:53 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
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first version of units in escript
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2397 -
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Modified
Fri Apr 24 04:24:28 2009 UTC
(13 years, 1 month ago)
by
ahallam
Original Path:
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End Week 4, Finalised 1D examples, need work on text but script ok.
Begining of 2D example builds on 1D. Script semi-finalised, text to complete.
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2394 -
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Modified
Fri Apr 17 01:32:30 2009 UTC
(13 years, 1 month ago)
by
caltinay
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Updated shake75 options file.
Revision
2393 -
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Modified
Thu Apr 16 04:24:07 2009 UTC
(13 years, 1 month ago)
by
ahallam
Original Path:
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End Day Commit
Working on onedheatdiff_var001
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Thu Apr 16 01:53:23 2009 UTC
(13 years, 1 month ago)
by
ahallam
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Initial Commital of CookBook to SVN
Has 2.5 Weeks work and semi completed first heat diffusion tutorial
Revision
2391 -
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Thu Apr 16 01:08:57 2009 UTC
(13 years, 1 month ago)
by
jfenwick
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Minor tweak to title page.
Better handling of alternative names in SConstruct.
Revision
2390 -
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Wed Apr 15 06:46:42 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
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some minor fixes.
Revision
2389 -
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Modified
Wed Apr 15 06:46:01 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
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some minor fixes.
Revision
2388 -
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Modified
Wed Apr 15 06:21:25 2009 UTC
(13 years, 1 month ago)
by
jfenwick
Original Path:
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scons files executed on compute nodes will use the config file for the service node (when we get the other issues
sorted).
Revision
2387 -
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Modified
Wed Apr 15 05:05:27 2009 UTC
(13 years, 1 month ago)
by
jfenwick
Original Path:
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Changed the figure eps->pdf to use a builder to make hypothetical windows doc building easier.
Revision
2386 -
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Modified
Wed Apr 15 03:54:25 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
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some minor fixes
Revision
2385 -
Directory Listing
Modified
Wed Apr 15 03:52:38 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
two fixes dealing with zero samples under MPI
Revision
2384 -
Directory Listing
Modified
Wed Apr 15 00:17:20 2009 UTC
(13 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Added getDataRW to DataC
Revision
2383 -
Directory Listing
Modified
Tue Apr 14 03:53:56 2009 UTC
(13 years, 1 month ago)
by
artak
Original Path:
trunk
-h parameter added for help
Revision
2382 -
Directory Listing
Modified
Tue Apr 14 03:48:22 2009 UTC
(13 years, 1 month ago)
by
artak
Original Path:
trunk
Testing environment now mor flexible. Added a lot of options.
Revision
2381 -
Directory Listing
Modified
Tue Apr 14 03:46:59 2009 UTC
(13 years, 1 month ago)
by
artak
Original Path:
trunk
Ruge Stuben and Aggregiation is added for testing performance of AMG solver.
Revision
2380 -
Directory Listing
Modified
Tue Apr 14 03:23:29 2009 UTC
(13 years, 1 month ago)
by
artak
Original Path:
trunk
minor typo
Revision
2379 -
Directory Listing
Modified
Thu Apr 9 07:36:55 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
type fixed.
Revision
2378 -
Directory Listing
Modified
Thu Apr 9 01:09:08 2009 UTC
(13 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Added warning when openmp params are specified by escript was build without openmp.
escript now reports the number of threads requested.
Revision
2377 -
Directory Listing
Modified
Wed Apr 8 07:57:55 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
a namespace problem in pycad fixed.
Revision
2376 -
Directory Listing
Modified
Tue Apr 7 06:21:31 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
output form others than the master process can now be switched off (stderr is still redirected to master)
Revision
2375 -
Directory Listing
Modified
Tue Apr 7 04:41:28 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
MPI hints added
Revision
2374 -
Directory Listing
Modified
Tue Apr 7 00:26:49 2009 UTC
(13 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Modified utest to use the wrapper script.
Revision
2373 -
Directory Listing
Modified
Mon Apr 6 23:49:31 2009 UTC
(13 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Minor spelling and man page tweaks.
Revision
2372 -
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Modified
Mon Apr 6 23:36:15 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
changes to the urls
Revision
2371 -
Directory Listing
Modified
Mon Apr 6 11:48:32 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
missing citations and references added
Revision
2370 -
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Modified
Mon Apr 6 06:41:49 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
some modifications to docu for MPI
Revision
2369 -
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Modified
Mon Apr 6 05:32:12 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
some fixed for mpich2
Revision
2368 -
Directory Listing
Modified
Mon Apr 6 05:05:35 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
some fixes for MKL and Mpisize>1
Revision
2367 -
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Modified
Mon Apr 6 04:51:49 2009 UTC
(13 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Added version number to deb files.
Fixed tests to check for ppmtompeg before running
Revision
2366 -
Directory Listing
Modified
Mon Apr 6 03:10:55 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
starter for MPICH and MPICH2 add
Revision
2365 -
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Modified
Mon Apr 6 01:25:25 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
all tests passed under scons on 4 mpi processes with openmpi on shake34
Revision
2364 -
Directory Listing
Modified
Fri Apr 3 08:06:30 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
MPI intel works now for the escript wrapper.
Revision
2363 -
Directory Listing
Modified
Fri Apr 3 03:56:19 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
scons should now be able to run tests under MPI and OpenMP
Revision
2362 -
Directory Listing
Modified
Fri Apr 3 02:41:14 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
escript wrapper does not use Compiled.with.*
Revision
2361 -
Directory Listing
Modified
Fri Apr 3 00:37:25 2009 UTC
(13 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Hopefully fixing the bad figures.
It turns out latex2html can not handle the optional angle= param in
\includegraphics
Revision
2360 -
Directory Listing
Modified
Thu Apr 2 04:12:12 2009 UTC
(13 years, 1 month ago)
by
artak
Original Path:
trunk
AMG now checks how many elemens left. if n_F<500, then it does not coursen further.
Revision
2359 -
Directory Listing
Modified
Thu Apr 2 03:50:33 2009 UTC
(13 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Moved man page for easier testing.
Modified the wrapper script to take into account debian packaging.
This setting is recorded in the escript wrapper automatically by the package building script.
Revision
2358 -
Directory Listing
Modified
Wed Apr 1 22:25:24 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
mpi is not really ready yet.
Revision
2357 -
Directory Listing
Modified
Wed Apr 1 06:01:56 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
fixes to run escript command with SGI MPT
Revision
2356 -
Directory Listing
Modified
Wed Apr 1 04:46:22 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
more on escript command.
Revision
2355 -
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Modified
Wed Apr 1 04:08:28 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
intel MPI added.
Revision
2354 -
Directory Listing
Modified
Wed Apr 1 04:01:58 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
some modifications to the Darcy flux solver to make it faster and more robust.
Revision
2353 -
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Modified
Wed Apr 1 01:49:47 2009 UTC
(13 years, 1 month ago)
by
artak
Original Path:
trunk
AMG levels parameter moved to options file. Now one can set how many levels AMG will go in SetDefauls. Default value is 3.
Revision
2352 -
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Modified
Wed Apr 1 01:15:15 2009 UTC
(13 years, 1 month ago)
by
jfenwick
Original Path:
trunk
Updated doco to reflect changed env variables
Revision
2351 -
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Modified
Tue Mar 31 08:26:41 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
some fixes in the transport solver
Revision
2350 -
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Modified
Tue Mar 31 08:26:05 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
more escript wrapper stuff
Revision
2349 -
Directory Listing
Modified
Mon Mar 30 08:14:23 2009 UTC
(13 years, 1 month ago)
by
gross
Original Path:
trunk
first version of escript command: no MPI support yet.
Revision
2348 -
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Modified
Mon Mar 30 06:27:14 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
obsolet
Revision
2347 -
Directory Listing
Modified
Mon Mar 30 06:07:47 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Added windows notes to install guide.
Revision
2346 -
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Modified
Mon Mar 30 05:05:44 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Added instructions to test installations.
Revision
2345 -
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Modified
Mon Mar 30 04:44:06 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Added proper man page (with formatting and everything).
Updated package description.
Revision
2344 -
Directory Listing
Modified
Mon Mar 30 02:13:58 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Change __url__ to launchpad site
Revision
2343 -
Directory Listing
Modified
Mon Mar 30 01:34:45 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Added -b option to wrapper script. For the running of non-python
binaries.
Revision
2342 -
Directory Listing
Modified
Sun Mar 29 23:28:55 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
No comment.
Revision
2340 -
Directory Listing
Modified
Fri Mar 27 05:32:05 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
And again
Revision
2339 -
Directory Listing
Modified
Fri Mar 27 05:14:55 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Fixing a bug preventing docs from building
Revision
2338 -
Directory Listing
Modified
Fri Mar 27 05:01:49 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Added vars for mpi_flavour
Output correct version into the user guide
Revision
2337 -
Directory Listing
Modified
Thu Mar 26 07:07:42 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
Transport class uses now useBackwardEuler rather than the mysterious theta.
Revision
2336 -
Directory Listing
Modified
Thu Mar 26 06:09:20 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Fixed title for pdf builds.
All the peices build now. (There are still issues with Figure 1.7 in the html version).
Revision
2335 -
Directory Listing
Modified
Thu Mar 26 04:33:44 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
The user guide now builds under pdflatex (if you have converted the figures). Unfortunately, it has a really ugly title.
Revision
2334 -
Directory Listing
Modified
Thu Mar 26 03:05:33 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Getting install guide to build.
Revision
2333 -
Directory Listing
Modified
Wed Mar 25 02:15:11 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Minor format tweaks.
All relevant info from the twiki install page now copied.
(Except INSTALL.SGI_ICE)
Revision
2332 -
Directory Listing
Modified
Tue Mar 24 01:13:08 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Added new options to the escript wrapper.
This populates all the variables described in the documentation but does
not necessarily do anything with them.
Fixed minor typo in doco.
Revision
2331 -
Directory Listing
Modified
Mon Mar 23 01:18:21 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Updated the escript execution section.
Added a few references.
Revision
2330 -
Directory Listing
Modified
Mon Mar 23 01:18:03 2009 UTC
(13 years, 2 months ago)
by
artak
Original Path:
trunk
RILU changed to Jacobi in accordance with mantis bug reported a while ago
Revision
2329 -
Directory Listing
Modified
Mon Mar 23 00:42:57 2009 UTC
(13 years, 2 months ago)
by
artak
Original Path:
trunk
minor
Revision
2328 -
Directory Listing
Modified
Fri Mar 20 03:40:56 2009 UTC
(13 years, 2 months ago)
by
artak
Original Path:
trunk
Added a section on installing using Macports. in srclinux.tex $ replaced by $
Revision
2327 -
Directory Listing
Modified
Thu Mar 19 06:01:26 2009 UTC
(13 years, 2 months ago)
by
artak
Original Path:
trunk
Mac OS X development tools instructions are added.
Revision
2326 -
Directory Listing
Modified
Thu Mar 19 05:34:00 2009 UTC
(13 years, 2 months ago)
by
artak
Original Path:
trunk
Instructions on how to install on Mac from source.
Revision
2325 -
Directory Listing
Modified
Thu Mar 19 05:32:13 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
tests for Lame equation added.
Revision
2324 -
Directory Listing
Modified
Thu Mar 19 04:35:30 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Fixed some non-portable paths in SConstruct.
Added section links for compiling only escript.
Revision
2323 -
Directory Listing
Modified
Thu Mar 19 04:23:32 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
test for Helmholtz added
Revision
2322 -
Directory Listing
Modified
Thu Mar 19 04:13:21 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
ops
Revision
2321 -
Directory Listing
Modified
Thu Mar 19 04:08:59 2009 UTC
(13 years, 2 months ago)
by
artak
Original Path:
trunk
Mac instructions for binary bundle.
Revision
2320 -
Directory Listing
Modified
Thu Mar 19 03:40:16 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
some modifictaions to make sure that Mesh_merge.c Mesh_glueFaces.c Mesh_joinFaces.c reject to work under MPI
Revision
2319 -
Directory Listing
Modified
Thu Mar 19 03:19:41 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
some more work on tests on MPI
Revision
2318 -
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Modified
Thu Mar 19 03:18:11 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
more on MPI in the users guide.
Revision
2317 -
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Modified
Thu Mar 19 01:48:00 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Adding Content.
Revision
2316 -
Directory Listing
Modified
Thu Mar 19 01:22:15 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
some documentation on the escript wrapper added.
Revision
2315 -
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Modified
Wed Mar 18 00:38:48 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
fixes for MPI
Revision
2314 -
Directory Listing
Modified
Tue Mar 17 04:16:24 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
proper error handling for ppn2mpeg execution added.
Revision
2313 -
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Modified
Tue Mar 17 03:41:17 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
pyvisi is now rejecting to work under MPI with more than 1 processor. Tests for this configuration are dropped now.
Revision
2312 -
Directory Listing
Modified
Tue Mar 17 01:42:02 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Made the standalone setup a bit more generic.
Revision
2311 -
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Modified
Mon Mar 16 23:00:08 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Fixed a bug causing Mac crashes.
Revision
2310 -
Directory Listing
Modified
Mon Mar 16 04:07:43 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
some modifications to the test to fix a problem cased by reordering in MPI
Revision
2309 -
Directory Listing
Modified
Mon Mar 16 02:42:13 2009 UTC
(13 years, 2 months ago)
by
caltinay
Original Path:
trunk
Fixed a typo affecting OpenMP usage.
Revision
2308 -
Directory Listing
Modified
Mon Mar 16 01:20:56 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
size_t may be 64 bits which is incompatible to MPI_INT. This problem is fixed by inserting a cast in Mesh_read.c.
Moreover a fix has been added making sure that gmsh and triangle are executed on one processor only.
Revision
2307 -
Directory Listing
Modified
Mon Mar 16 00:38:09 2009 UTC
(13 years, 2 months ago)
by
artak
Original Path:
trunk
some clean up. RS and Aggregiation are removed.
Revision
2306 -
Directory Listing
Modified
Mon Mar 16 00:23:57 2009 UTC
(13 years, 2 months ago)
by
artak
Original Path:
trunk
verbose added
Revision
2305 -
Directory Listing
Modified
Mon Mar 16 00:19:41 2009 UTC
(13 years, 2 months ago)
by
artak
Original Path:
trunk
verbose option is added
Revision
2304 -
Directory Listing
Modified
Fri Mar 13 03:17:24 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
a more robust way of doing whereZero and whereNotZero.
Revision
2303 -
Directory Listing
Modified
Fri Mar 13 01:34:36 2009 UTC
(13 years, 2 months ago)
by
artak
Original Path:
trunk
This was the troublemaker for test failures on both MAC and Debian. I think numarry has a bug in memory managment. So we removed some numarray.array related lines in _givapp function and tests pass again.
Revision
2302 -
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Modified
Thu Mar 12 04:40:03 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Debian/ubuntu package now includes the user guide and the python doco (but not the c++) as well as the examples.tar.gz.
A file called buildvars is now written to the lib directory.
It contains some configuration things I can easily get in python.
Feel free to add additional ones.
Revision
2301 -
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Modified
Thu Mar 12 01:35:26 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
test for power law added
Revision
2300 -
Directory Listing
Modified
Wed Mar 11 08:17:57 2009 UTC
(13 years, 2 months ago)
by
gross
Original Path:
trunk
a power law model. tests still need to be added and needs to be linked with an incompressible solver.
Revision
2299 -
Directory Listing
Modified
Wed Mar 11 03:14:41 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Modified script template to explcitly require bash (because of the
bash-ism I'm using).
Wrapper script also sets up environment for standalone builds if the
STANDALONE variable is set.
utest.sh will now be generated with executable bit set.
Revision
2298 -
Directory Listing
Modified
Sun Mar 8 23:45:29 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
wrapper script construction does not record callers environment.
Revision
2297 -
Directory Listing
Modified
Fri Mar 6 04:46:14 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
SConstruct now records the version of python used to build.
The wrapper script now checks (where possible) and exits with a warning
if the versions do not match.
Revision
2296 -
Directory Listing
Modified
Thu Mar 5 05:47:34 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
The escript wrapper now determines ESCRIPT_ROOT based on the position of the
script rather than the value inserted at compile time.
This is one step towards making binary releases less tied to a known location.
SConstruct now keeps escript root at the front of LD_LIBRARY_PATH and PYTHONPATH
The wrapper script now accepts a -e arguement.
This doesn't actually run anything but outputs a set of exports which one can
eval to give you the same environment as the wrapper.
Revision
2295 -
Directory Listing
Modified
Wed Mar 4 05:18:28 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Modified SConstruct to be smarter about when it puts /boost on the end
of paths.
Revision
2294 -
Directory Listing
Modified
Mon Mar 2 03:44:27 2009 UTC
(13 years, 2 months ago)
by
jfenwick
Original Path:
trunk
Added instructions on how to install debian package to the install guide.
Wrapper script generation now produces two scripts (escript and finleypython).
The two are identical - eventually we will remove finleypython.
Modified the wrapper script so it will print a message and start the python interpreter if you don't specify a script.
Revision
2293 -
Directory Listing
Modified
Fri Feb 27 05:34:51 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Cleaned up the dependencies.
The builddeb script puts fewer libraries in escript/lib and doesn't depend on dev packages on g++.
Revision
2292 -
Directory Listing
Modified
Fri Feb 27 02:07:43 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Disabling default use of OpenMP in SConstruct.
I have set the option in service0_options so savanna should build as before.
If you are expecting OpenMP by default on any other machine please adjust your options files accordingly.
Revision
2291 -
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Modified
Fri Feb 27 01:53:06 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Added scripts and such for building debian packages against Debian/Lenny.
Some things like the man page and the package description need some work but the packages produced appear to work.
If people are going to produce .debs please read read the packaging/lenny/README_developers_this_means_you
file.
Revision
2290 -
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Modified
Thu Feb 26 06:38:16 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Some minor changes to doco before I mess about with packaging.
Revision
2289 -
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Modified
Wed Feb 25 03:38:59 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Main compilation page copied from twiki.
Revision
2288 -
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Modified
Tue Feb 24 06:11:48 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
a new idea for the sacling factor
Revision
2287 -
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Modified
Tue Feb 24 04:29:17 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Added skeleton of install guide.
Removed some files which come in the standard texlive distro anyway.
Updated README_LICENSE to list python tex styles.
Revision
2286 -
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Modified
Mon Feb 23 02:50:06 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Added build_full target. This will build escript, the unit test binaries
and compile all the python files.
This should be called before using utest.sh.
Added gcc openmp params for badger
Revision
2285 -
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Modified
Fri Feb 20 06:02:30 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Modified the escript python module.
If the escriptExitProfiling environment variable is set, then the
contents of the status file from /proc will be copied to memescript.pid
This means we can log fun things like peak memory usage.
This only works on linux systems recent enough to have the status file.
Revision
2284 -
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Modified
Fri Feb 20 02:10:59 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
soem small fixes.
Revision
2283 -
Directory Listing
Modified
Fri Feb 20 01:08:21 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
doxygen doco now correctly reports global project revsion number.
link to epydoc is now via a relative URL (avoids the problem of nightly doxygen pointing at out of date release epydoc).
Revision
2282 -
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Modified
Thu Feb 19 06:30:19 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
setTaggedValueByName now throws if the tag name does not exist.
The documentation says this is what happens - now the code matches the doco.
This resolves issue 238
Revision
2281 -
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Modified
Thu Feb 19 05:36:38 2009 UTC
(13 years, 3 months ago)
by
artak
Original Path:
trunk
minor comments are added
Revision
2280 -
Directory Listing
Modified
Thu Feb 19 03:34:35 2009 UTC
(13 years, 3 months ago)
by
artak
Original Path:
trunk
Some statistics changed in solver.c. In AMG stopping criteria now depend on levels specified. In loadMM conditions on pivot and lval reformulated to avoid numerical overflow.
Revision
2279 -
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Modified
Tue Feb 17 10:51:12 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
mofification of the weighting factor
Revision
2278 -
Directory Listing
Modified
Tue Feb 17 07:39:16 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
for some reason my gcc version requires NL at the end of the source files.
Revision
2277 -
Directory Listing
Modified
Tue Feb 17 07:38:07 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
type fixed
Revision
2276 -
Directory Listing
Modified
Tue Feb 17 06:21:31 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
utest.sh now builds correctly for Macintosh.
It turns out if you really want to differentiate between Mac and Linux,
you should use platform not os.
Revision
2275 -
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Modified
Tue Feb 17 04:25:08 2009 UTC
(13 years, 3 months ago)
by
artak
Original Path:
trunk
Extra tests are added for checking the quality of the solution from Jacobi and AMG.
Revision
2274 -
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Modified
Tue Feb 17 04:20:29 2009 UTC
(13 years, 3 months ago)
by
artak
Original Path:
trunk
Bug fixed with type overflowing, namely in q_sort pivot and rval variables now unsigned long instead of int. Extra check is added to avoid this in the future.
Revision
2273 -
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Modified
Tue Feb 17 01:22:48 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Added compile flags to turn autolazy on and off.
These are for testing purposes only.
Revision
2272 -
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Modified
Mon Feb 16 23:40:03 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Stop icpc on savanna warning about ignoring namespaces.
Revision
2271 -
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Modified
Mon Feb 16 05:08:29 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Merging version 2269 to trunk
Revision
2269 -
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Modified
Fri Feb 13 03:55:28 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Updating prepare.py
Revision
2268 -
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Modified
Fri Feb 13 01:23:42 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Tweaking environment
Revision
2267 -
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Modified
Thu Feb 12 06:18:45 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
weighting factor introduced.
Revision
2265 -
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Modified
Wed Feb 11 07:46:07 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
somehow the fix of the test did not make it into the repository.
Revision
2264 -
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Modified
Wed Feb 11 06:48:28 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
a new darcy flux solver.
Revision
2263 -
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Modified
Wed Feb 11 03:56:47 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
test for gmsh command line generation fixed (didn't know that there is such a test)
Revision
2262 -
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Modified
Wed Feb 11 01:58:06 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Create missing directory in script.
Revision
2261 -
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Modified
Tue Feb 10 08:38:53 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
GMRES supports prconditioning from the right now.
Revision
2260 -
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Modified
Tue Feb 10 04:50:10 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
That should be the last of the copyWithMask related errors.
Revision
2259 -
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Modified
Tue Feb 10 01:49:44 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Fixes errors due to feeding scalars and vectors into the same call to maximum.
Revision
2258 -
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Modified
Tue Feb 10 00:27:44 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Making directories required for pyvisi tests
Revision
2257 -
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Modified
Mon Feb 9 07:06:00 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
test can now deal with contact elements
Revision
2256 -
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Modified
Mon Feb 9 06:20:32 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Throw an exception if AbstractDomain::MPIBarrier is called (This shouldn't happen).
Added Barrier to saveVTK.
Replaced some misused keywords.
Revision
2255 -
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Modified
Mon Feb 9 06:10:13 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
problem in maximum fixed.
Revision
2254 -
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Modified
Sun Feb 8 23:40:22 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
All these commits are because I am working with something which processes a clean checkout.
Revision
2253 -
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Modified
Sun Feb 8 23:35:28 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Fixing incorrect user info
Revision
2252 -
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Modified
Fri Feb 6 07:51:28 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
some notes for the kelvin model added. Implementation is still missing
Revision
2251 -
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Modified
Fri Feb 6 06:50:39 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
new compressible flow solver
Revision
2250 -
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Modified
Fri Feb 6 06:25:21 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Looking good.
Revision
2249 -
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Modified
Fri Feb 6 00:11:51 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Fixed some pathing issues.
Revision
2248 -
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Modified
Thu Feb 5 23:24:04 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
small fixes to gmsh command generation
Revision
2247 -
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Modified
Thu Feb 5 07:39:20 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
output control fixed.
Revision
2246 -
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Modified
Thu Feb 5 06:04:55 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Made some changes to the way copyWithMask works.
Revision
2245 -
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Modified
Wed Feb 4 06:27:59 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
renaming to make _GMRESm visibale
Revision
2244 -
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Modified
Wed Feb 4 06:27:34 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
fix for openmp
Revision
2243 -
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Modified
Wed Feb 4 05:22:28 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
small bug fixed which could lead to a seg fault
Revision
2242 -
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Modified
Wed Feb 4 05:04:20 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Development continues on unit test framework
Revision
2241 -
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Modified
Wed Feb 4 03:34:57 2009 UTC
(13 years, 3 months ago)
by
artak
Original Path:
trunk
correct openmp options for MAC
Revision
2240 -
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Modified
Wed Feb 4 01:17:06 2009 UTC
(13 years, 3 months ago)
by
artak
Original Path:
trunk
Some statistical print outs are added in solver and loadMM to Paso_SparseMatrix method is added
Revision
2239 -
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Modified
Wed Feb 4 00:42:46 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Added pyvisi and c++ unit tests to build of utest.sh
Revision
2238 -
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Modified
Tue Feb 3 06:17:34 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
gmsh does not support curveture based meshing optin anymore
Revision
2237 -
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Modified
Tue Feb 3 06:14:19 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
better method to du clipping
Revision
2236 -
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Modified
Tue Feb 3 06:13:50 2009 UTC
(13 years, 3 months ago)
by
gross
Original Path:
trunk
switch to relative tolerance in face detection
Revision
2235 -
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Modified
Tue Feb 3 01:47:47 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Added support for generating non-scons test scripts
Revision
2234 -
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Modified
Mon Feb 2 05:30:30 2009 UTC
(13 years, 3 months ago)
by
artak
Original Path:
trunk
two new tests for Mountains class are added.
Revision
2232 -
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Modified
Fri Jan 30 05:24:02 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Ooops need this one too.
Revision
2231 -
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Modified
Fri Jan 30 05:16:05 2009 UTC
(13 years, 3 months ago)
by
jfenwick
Original Path:
trunk
Modified scons files to compile c++ unit tests with the same options used to compile the libraries.
Revision
2211 -
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Modified
Tue Jan 13 03:52:13 2009 UTC
(13 years, 4 months ago)
by
artak
Original Path:
trunk
Example of a usage of Mountains class.
Revision
2210 -
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Modified
Tue Jan 13 03:49:47 2009 UTC
(13 years, 4 months ago)
by
artak
Original Path:
trunk
First version of the mountains class.
Revision
2208 -
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Modified
Mon Jan 12 06:37:07 2009 UTC
(13 years, 4 months ago)
by
gross
Original Path:
trunk
more work on the dary solver
Revision
2206 -
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Modified
Fri Jan 9 03:50:29 2009 UTC
(13 years, 4 months ago)
by
caltinay
Original Path:
trunk
Added some more doxygen docu to escriptreader classes.
Revision
2204 -
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Modified
Fri Jan 9 01:33:39 2009 UTC
(13 years, 4 months ago)
by
caltinay
Original Path:
trunk
Fixed a little doxygen typo in the hyperlink.
Revision
2201 -
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Modified
Fri Jan 9 00:45:44 2009 UTC
(13 years, 4 months ago)
by
caltinay
Original Path:
trunk
Avoid NULL reference.
Revision
2200 -
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Modified
Thu Jan 8 23:55:40 2009 UTC
(13 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Fixed python string substitution in error messages for trace and transpose.
Added tests for invalid axis offsets for trace on the c++ side.
Revision
2199 -
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Modified
Thu Jan 8 06:10:52 2009 UTC
(13 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Misc fixes:
Added some svn:ignore properties for output files that were cluttering things up.
Lazy fixes:
Fixed shape calculations for TRACE and TRANSPOSE for rank>2.
Adjusted unit test accordingly.
As a Temporary change to DataC.cpp to test for lazy data in DataC's expanded check.
This is wrong but would only affect people using lazy data.
The proper fix will come when the numarray removal code moves over from the branch.
Made tensor product AUTOLAZY capable.
Fixed some bugs resolving tensor products (incorrect offsets in buffers).
Macro'd some stray couts.
- It appears that AUTOLAZY now passes all unit tests.
- It will not be _really_ safe for general use until I can add COW.
- (Everything's better with COW)
Revision
2198 -
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Modified
Thu Jan 8 05:59:21 2009 UTC
(13 years, 4 months ago)
by
gross
Original Path:
trunk
bug with OPENMP fixed.
Revision
2197 -
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Modified
Thu Jan 8 05:49:16 2009 UTC
(13 years, 4 months ago)
by
gross
Original Path:
trunk
modifications to the way cosntraints are handeled in the Transport problem
Revision
2196 -
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Modified
Wed Jan 7 06:14:59 2009 UTC
(13 years, 4 months ago)
by
caltinay
Original Path:
trunk
As harsh as it sounds: removed obsolete friendship between DataVar and Mesh.
Updated and added documentation to some more methods.
Revision
2195 -
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Modified
Wed Jan 7 04:13:52 2009 UTC
(13 years, 4 months ago)
by
jfenwick
Original Path:
trunk
Fixed a bug in lazy evaluation of Tensor Products.
Added / to end of boost path
Revision
2194 -
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Modified
Tue Jan 6 01:23:37 2009 UTC
(13 years, 4 months ago)
by
caltinay
Original Path:
trunk
escript2silo: Allow different meshes for different timesteps.
escriptreader: Fixed segfaults for some error conditions.
Revision
2193 -
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Modified
Mon Jan 5 04:29:06 2009 UTC
(13 years, 4 months ago)
by
lgraham
Original Path:
trunk
Edited Stokes flow and Level Set tutorials (grammar etc.)
Revision
2192 -
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Modified
Mon Jan 5 02:41:34 2009 UTC
(13 years, 4 months ago)
by
lgraham
Original Path:
trunk
Edited Stokes flow tutorial
Revision
2191 -
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Modified
Mon Jan 5 00:30:15 2009 UTC
(13 years, 4 months ago)
by
lgraham
Original Path:
trunk
Included a tutorial on fluid flow, using the StokesProblemCartesian class
Revision
2190 -
Directory Listing
Modified
Wed Dec 24 02:04:16 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
escriptreader: write special mesh variables into a "subdirectory" in the Silo
file. That way, "real" variables are better visible.
Revision
2189 -
Directory Listing
Modified
Tue Dec 23 04:24:37 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Changed generate_dumps script to use saveESD().
Revision
2188 -
Directory Listing
Modified
Tue Dec 23 04:24:03 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Implemented new utility function saveESD() which takes care of dumping the
given data objects with their domain and creates an ESD file containing the
required information. This obsoletes the necessity to use esdcreate for single
timestep datasets.
Revision
2187 -
Directory Listing
Modified
Tue Dec 23 04:13:15 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Moved escriptreader related classes into own namespace.
Revision
2186 -
Directory Listing
Modified
Tue Dec 23 03:31:18 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
escript2silo was linked to libescriptreader using its relative path. Fixed that
by using a separate environment for the tools.
Revision
2185 -
Directory Listing
Modified
Mon Dec 22 04:41:03 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Updated savanna scons file to pick up Silo library.
Revision
2184 -
Directory Listing
Modified
Mon Dec 22 04:27:26 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Scons'ified escriptreader library and tools. Added checks and options for the
Silo library which is required for escript2silo and optional for the library.
Updated shake75 options file.
Revision
2183 -
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Modified
Fri Dec 19 03:52:50 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Added escriptreader library with tools. For more information refer to README
file or wait for user documentation.
Revision
2182 -
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Modified
Thu Dec 18 03:30:17 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Fixed some more typos
Revision
2181 -
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Modified
Thu Dec 18 00:58:48 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Fixed two typos in bibliography
Revision
2180 -
Directory Listing
Modified
Thu Dec 18 00:30:25 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 3).
With boost 1.37 all epydoc warnings are gone now.
This commit should be a no-op.
Revision
2179 -
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Modified
Thu Dec 18 00:23:55 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Fixed compilation with boost 1.37 (namespace clash).
Revision
2178 -
Directory Listing
Modified
Thu Dec 18 00:08:58 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
AMG coupling parameter added to options file.
Revision
2177 -
Directory Listing
Modified
Wed Dec 17 23:51:23 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
used unused variable.
Added support for limiting the size of lazy expression trees.
500,000 seems a bit high
Revision
2172 -
Directory Listing
Modified
Wed Dec 17 08:30:12 2008 UTC
(13 years, 5 months ago)
by
phornby
Original Path:
trunk
Fixed some signed/unsigned comparisons occurin g via MAX().
They were harmless anyway.
Revision
2171 -
Directory Listing
Modified
Wed Dec 17 08:21:29 2008 UTC
(13 years, 5 months ago)
by
phornby
Original Path:
trunk
Unitary minus applied to unsigned returns unsigned error fixed
lines 1124 & 1142. Probably not what was intended......
Revision
2170 -
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Modified
Wed Dec 17 06:16:43 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Another unit test fix
Revision
2169 -
Directory Listing
Modified
Wed Dec 17 03:08:58 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 2).
All epydoc warnings for these files have been fixed.
This commit should be a no-op.
Revision
2168 -
Directory Listing
Modified
Wed Dec 17 00:50:37 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
methods are added for loading right-hand-side from MM format
Revision
2167 -
Directory Listing
Modified
Tue Dec 16 23:31:05 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Adjust tests for changes to number of buffers required.
Prevent cpp unit test from failing.
Revision
2166 -
Directory Listing
Modified
Tue Dec 16 06:08:02 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Fixed a bug related to lazy trace
Revision
2165 -
Directory Listing
Modified
Tue Dec 16 05:32:43 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
testing level as a parameter added
Revision
2164 -
Directory Listing
Modified
Tue Dec 16 04:00:23 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
escript library added
Revision
2163 -
Directory Listing
Modified
Tue Dec 16 03:55:06 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
minor
Revision
2162 -
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Modified
Tue Dec 16 03:51:27 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
Unused variable removed
Revision
2161 -
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Modified
Tue Dec 16 03:31:00 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
Paso Testing target is added.
Revision
2160 -
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Modified
Tue Dec 16 03:29:54 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
Testing envirounment for PASO
Revision
2159 -
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Modified
Tue Dec 16 03:27:16 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
Numerous bags are fixed for loading MatrixMarket files.
Revision
2158 -
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Modified
Mon Dec 15 07:17:47 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 1).
This commit should be a no-op.
Revision
2157 -
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Modified
Mon Dec 15 06:05:58 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Some lazy fixes to the symmetric operation.
Revision
2156 -
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Modified
Mon Dec 15 05:09:02 2008 UTC
(13 years, 5 months ago)
by
gross
Original Path:
trunk
some modifications to the iterative solver to make them easier to use.
There are also improved versions of the Darcy flux solver and the incompressible solver.
Revision
2155 -
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Modified
Mon Dec 15 04:12:58 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Test
Revision
2154 -
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Modified
Mon Dec 15 01:50:56 2008 UTC
(13 years, 5 months ago)
by
trankine
Original Path:
trunk
* added include based on Joel's advice. Build now working on win32. unit tests not run yet...
Revision
2153 -
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Modified
Fri Dec 12 00:18:18 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Fixed a bug related to lazy tensor product.
Revision
2152 -
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Modified
Thu Dec 11 04:26:42 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Fixed some errors related to lazy processing of scalars.
AutoLazy passes more unit tests before failing.
Revision
2151 -
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Modified
Wed Dec 10 06:34:25 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Moved common functionality from saveDX/VTK into private method. May be used
for future save* methods.
Revision
2150 -
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Modified
Wed Dec 10 05:57:12 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Removed unnecessary "magic name length".
Revision
2149 -
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Modified
Wed Dec 10 05:08:17 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
Fixed a typo in error message.
Revision
2148 -
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Modified
Wed Dec 10 04:57:35 2008 UTC
(13 years, 5 months ago)
by
lgraham
Original Path:
trunk
Updated the LevelSet class section in the Models chapter. The section is contained in a .tex file at the moment to avoid conflict.
Revision
2147 -
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Modified
Wed Dec 10 04:41:26 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Made some changes to c++ unit tests to accomodate AUTOLAZY.
whereZero and whereNonZero can now work with lazy data.
There are some double frees if AUTOLAZY is turned on so don't use it yet.
Revision
2146 -
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Modified
Wed Dec 10 02:59:46 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Replaced duplicate code in Data with macro calls.
Added AUTOLAZY parameter (defaults to off for now.)
Revision
2144 -
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Modified
Wed Dec 10 00:31:03 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
Some bugs are fixed: FSCANF_CHECK is returned NULL does not matter what. There are still some issues with ..._loadMM.
Revision
2142 -
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Modified
Tue Dec 9 06:22:57 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Added showEscriptParams to output a list of available params.
Revision
2141 -
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Modified
Tue Dec 9 04:32:32 2008 UTC
(13 years, 5 months ago)
by
caltinay
Original Path:
trunk
saveVTK: Reviewed and changed parts of this function due to several issues.
Confirmed that it's still working using finley/test/python/generate_dumps.py
(manually inserted saveVTK) with and without MPI on 1 and 4 processors.
Changes include:
- removed unnecessary USE_VTK check - we are not using any VTK functions
- fixed writing of Rec9 & Hex27 connectivity data in MPI mode
- fixed some cases where the file was not closed and memory was not freed
- replaced many instances of fprintf by fputs (simple strings)
- some minor optimizations by moving or initializing variables and combining
if-clauses
- got rid of ~300 lines of code and switched to consistent indentation making
the file a bit better readable
Revision
2138 -
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Modified
Mon Dec 8 02:27:07 2008 UTC
(13 years, 5 months ago)
by
lgraham
Original Path:
trunk
starting a section for the Level Set class in the Models chapter.
Revision
2132 -
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Modified
Fri Dec 5 00:18:06 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
So its not just the Mac that needed -Wno-strict-aliasing
Revision
2131 -
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Modified
Thu Dec 4 06:09:50 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
Openmp bug is fixed in Paso_cum_sum and some printouts removed from Solver_AMG
Revision
2130 -
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Modified
Thu Dec 4 05:56:45 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Modifications to keep both the mac and linux happy.
Revision
2129 -
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Modified
Thu Dec 4 03:53:02 2008 UTC
(13 years, 5 months ago)
by
lgraham
Original Path:
trunk
Added RT2D.py python script for levelset tutorial to examples directory.
Revision
2128 -
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Modified
Thu Dec 4 03:48:22 2008 UTC
(13 years, 5 months ago)
by
lgraham
Original Path:
trunk
Added description of Rayleigh-Taylor instability python script, and a note on visualising the output with visit.
Revision
2127 -
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Modified
Thu Dec 4 03:42:45 2008 UTC
(13 years, 5 months ago)
by
lgraham
Original Path:
trunk
added figures of simulation output for Rayleigh-Taylor instability; produced by visIt
Revision
2126 -
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Modified
Thu Dec 4 00:13:03 2008 UTC
(13 years, 5 months ago)
by
ksteube
Original Path:
trunk
fixed a logic mess I had made in Paso_MPIInfo_noError()
Revision
2125 -
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Modified
Wed Dec 3 09:13:10 2008 UTC
(13 years, 5 months ago)
by
phornby
Original Path:
trunk
Just the usual signed/unsigned mismatch corrections. Should be harmless.
this checkin is to propagate the changes to other platforms for testing.
Revision
2123 -
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Modified
Wed Dec 3 03:26:02 2008 UTC
(13 years, 5 months ago)
by
gross
Original Path:
trunk
typo fixed
Revision
2122 -
Directory Listing
Modified
Wed Dec 3 02:52:28 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
Codition is added in the corsening process to avoid rows with very small row sum.
Revision
2121 -
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Modified
Wed Dec 3 00:25:08 2008 UTC
(13 years, 5 months ago)
by
jfenwick
Original Path:
trunk
Removing pdf from repository.
Revision
2120 -
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Modified
Tue Dec 2 06:21:49 2008 UTC
(13 years, 5 months ago)
by
lgraham
Original Path:
trunk
Added Rayleigh-Taylor instability code into users guide
Revision
2115 -
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Modified
Tue Dec 2 01:21:07 2008 UTC
(13 years, 5 months ago)
by
lgraham
Original Path:
trunk
Added in theory of the reinitialisation procedure for the level set method.
Revision
2114 -
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Modified
Tue Dec 2 01:16:25 2008 UTC
(13 years, 5 months ago)
by
ksteube
Original Path:
trunk
a new script to create a source distribution file
Revision
2113 -
Directory Listing
Modified
Mon Dec 1 06:27:14 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
Temporary solution for nusty rows: a condition added
Revision
2112 -
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Modified
Mon Dec 1 02:53:58 2008 UTC
(13 years, 5 months ago)
by
artak
Original Path:
trunk
Uses Jacobi as a smoother and beats any preconditioner in 2D(for some problems) where number of elemens in one direction is more that 200
Revision
2110 -
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Modified
Fri Nov 28 05:55:00 2008 UTC
(13 years, 6 months ago)
by
ksteube
Original Path:
trunk
Fixed nightly documentation.
Removed time command from wrapper. I thought it was standard UNIX but
somebody's system didn't have it, so I removed it.
Revision
2109 -
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Modified
Fri Nov 28 05:09:36 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
An attempt at a license file.
Revision
2108 -
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Modified
Fri Nov 28 05:09:23 2008 UTC
(13 years, 6 months ago)
by
gross
Original Path:
trunk
some minor changes to PCG and some extra suspicious characters.
Revision
2107 -
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Modified
Fri Nov 28 04:39:07 2008 UTC
(13 years, 6 months ago)
by
artak
Original Path:
trunk
Current version of AMG uses ILU for relaxation, however it is not stable when schur matrix becames more denser. For example it is not stable for -e paramenter is more 400 in 2D for convection problem
Revision
2106 -
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Modified
Fri Nov 28 04:31:23 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Removing files which are unused/old/not-distributable.
Revision
2105 -
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Modified
Fri Nov 28 01:52:12 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Data::copySelf() now returns an object instead of a pointer.
Fixed a bug in copyFromArray relating to expanded data.
Revision
2104 -
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Modified
Thu Nov 27 05:36:47 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed non-compilage.
Removed mysterious t and t! from output.
Revision
2102 -
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Modified
Thu Nov 27 00:32:33 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed wrapper script to OpenMP can run without invoking mpi.
Revision
2101 -
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Modified
Wed Nov 26 08:29:08 2008 UTC
(13 years, 6 months ago)
by
gross
Original Path:
trunk
UMF link check activated. BLAS check stil fails.
Revision
2100 -
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Modified
Wed Nov 26 08:13:00 2008 UTC
(13 years, 6 months ago)
by
gross
Original Path:
trunk
This commit cleans up the incompressible solver and adds a DarcyFlux solver in model module.
Some documentation for both classes has been added.
The convection code is only linear at the moment.
Revision
2098 -
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Modified
Tue Nov 25 12:04:36 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Fix unsigned/signed comparison.
Revision
2097 -
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Modified
Tue Nov 25 12:03:29 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
moved the code
#ifndef __const
# if (defined __STDC__ && __STDC__) || defined __cplusplus
# define __const const
# else
# define __const
# endif
#endif
from escript/src/system_dep.h to esysUtils/src/system_dep.h, just for blocktimer's sake.
Revision
2096 -
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Modified
Tue Nov 25 10:29:27 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Starting from the recent reversion:
1. Leave __del__ alone.
2. mkstemp() actually opens the file it creates, only to be opened again in getMeshHandler(), so add an os.close() straight after the mkstemp()'s
3. in getMeshHandler(), close the script file immediately when finished with it instead of doing something non-local in __del__.
Untested on 'nix's at this point. Commit is for testing purposes.
Revision
2094 -
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Modified
Tue Nov 25 05:45:41 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
saveVTK: Close the file even if error is set upon completion. Note that
in some places the function still returns without proper clean up but
this won't be fixed until the rewrite to avoid more mess in the code.
Revision
2092 -
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Modified
Tue Nov 25 04:18:17 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Added macro to disable debug output from Lazy Data.
Revision
2091 -
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Modified
Tue Nov 25 03:26:51 2008 UTC
(13 years, 6 months ago)
by
ksteube
Original Path:
trunk
Updates for running epydoc and creating examples_zipfile
Revision
2090 -
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Modified
Mon Nov 24 06:41:08 2008 UTC
(13 years, 6 months ago)
by
ksteube
Original Path:
trunk
Reverted pycad/py_src/gmsh.py to before revision 1904.
A change had been made to the way the geo file was opened.
Revision
2089 -
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Modified
Mon Nov 24 06:07:29 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Resolve mantis issue 216.
Removed the asAbstractContinuousDomain(X) member which did not take cast
failure into account.
Rewrote the few places where it was used.
Revision
2088 -
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Modified
Mon Nov 24 05:39:38 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
pycad: Added missing 'self' scope
Revision
2087 -
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Modified
Mon Nov 24 04:51:30 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Addressing mantis issue #221.
Interpolation.. and probeInterpolation.. now "work" for the NullDomain.
Work means throw a descriptive exception if you try to move into or out
of the NullDomain.
The bad_cast exception related to this has been fixed.
Revision
2086 -
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Modified
Mon Nov 24 02:38:50 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Added checks in C_GeneralTensorProduct (Data:: and Delayed forms) as
well as the DataAbstract Constructor to prevent Objects with Rank>4
being created.
Moved the relevant #define into systemdep.
Removed some comments.
Revision
2085 -
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Modified
Mon Nov 24 00:45:48 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Added c++ unit tests for new operations.
Added resolve to some operations in Data
Revision
2084 -
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Modified
Fri Nov 21 05:20:42 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed a warning in cpp unit tests under dodebug
Pointed the url for python doco at shake200 rather than iservo.
Added support for trace and transpose to LazyData.
Fixed bug in trace to initialise running totals.
Revision
2083 -
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Modified
Fri Nov 21 01:46:31 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
Same "fix" as before for unused fp_out and fp_err.
Revision
2082 -
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Modified
Fri Nov 21 01:46:05 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
Removed unused variable.
Revision
2081 -
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Modified
Fri Nov 21 01:28:31 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
escript/Data: Another fix for parallel var initialization. Also, the (error) return value of MPI_Gather was not used. I applied the same 'hack' as in other places in the file, namely declaring the variable beforehand but still ignoring the return value :-/
Revision
2080 -
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Modified
Fri Nov 21 01:20:14 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
paso/SchurComplement: Fixed variable initialization for OpenMP parallelization.
Revision
2079 -
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Modified
Fri Nov 21 01:04:56 2008 UTC
(13 years, 6 months ago)
by
artak
Original Path:
trunk
Changed comment operator from // to /* */, because it does not compile in our C standart
Revision
2078 -
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Modified
Thu Nov 20 16:10:10 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Two changes.
1. Move blocktimer from escript to esysUtils.
2. Make it possible to link to paso as a DLL or .so.
Should have no effect on 'nix's
In respect of 1., blocktimer had begun to spring up everywhere, so
for the moment I thought it best to move it to the only other library that
pops up all over the place.
In respect of 2., paso needed to be a DLL in order to use the windows intelc /fast
option, which does aggressive multi-file optimisations. Even in its current form, it either
vectorises or parallelises hundreds more loops in the esys system than appear in the pragmas.
In achieving 2. I have not been too delicate in adding
PASO_DLL_API
declarations to the .h files in paso/src. Only toward the end of the process of
the conversion, when the number of linker errors dropped below 20, say, did I choosy about what
functions in a header I declared PASO_DLL_API. As a result, there are likely to be many routines
declared as external functions symbols that are in fact internal to the paso DLL.
Why is this an issue? It prevents the intelc compiler from getting aggressive on the paso module.
With pain there is sometimes gain. At least all the DLL rules in windows give good
(non-microsoft) compiler writers a chance to really shine.
So, if you should see a PASO_DLL_API on a function in a paso header file,
and think to yourself, "that function is only called in paso, why export it?", then feel free to
delete the PASO_DLL_API export declaration.
Here's hoping for no breakage.....
Revision
2076 -
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Modified
Thu Nov 20 12:34:17 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
I may get into trouble for this.
boost-python 1.34 does have a docstring_options class,
but does not have a 3 argument constructor for
it. So the test has been modified to
#if ((BOOST_VERSION/100)%1000 > 34) || (BOOST_VERSION/100000 >1)
If you wish to make things more delicate, one can define a 2 argument construction
of docopt just for 1.34 (with an #elif). Probably not worth the effort frankly.
Hope that this has not broken anything for anyone else. The SVN logs suggest this is a
little fragile.....
Also, please be aware that much of our chemistry interface code, that we wish to use with
escript, makes extensive use of boost python.
Having two different boost versions mucking with the python interpreter sounds
like a really bad idea, I'm sure you'll agree.
The problem is that it is not a simple task for us to build new versions of boost-python
on all our platforms. Consequently, it would be nice to be informed when you guys
intend to upgrade a support library of this nature so that we can plan and allocate
resources to keep up.
Cheers.
Revision
2074 -
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Modified
Thu Nov 20 11:02:07 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Nearly there with dll'ing paso.
Revision
2073 -
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Modified
Thu Nov 20 10:51:41 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Still working away at makeing paso sharable on windows.
Revision
2072 -
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Modified
Thu Nov 20 10:40:19 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
More PASO_DLL_API declarations for externally called routines.
Revision
2071 -
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Modified
Thu Nov 20 10:29:56 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
More preparation for making paso a dll.
Revision
2070 -
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Modified
Thu Nov 20 10:11:13 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Further preparation for sharable paso.
Revision
2069 -
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Modified
Thu Nov 20 09:13:19 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Another ElementTypeId TypeId=NoType; fix.
Revision
2068 -
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Modified
Thu Nov 20 09:11:01 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Interim commit getting paso ready for becoming a shared library.
Revision
2067 -
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Modified
Thu Nov 20 06:22:56 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
Moved 'make dir' operation to the correct spot and extended the number
of timesteps a bit.
Revision
2066 -
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Modified
Thu Nov 20 05:31:33 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed Data::toString to look at the amount of data actually stored rather than the number of points in the domain.
Added support for GeneralTensorProduct to LazyData
Revision
2065 -
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Modified
Thu Nov 20 04:25:47 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Have the epydoc put its output in the correct place before anyone
notices.
Revision
2064 -
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Modified
Thu Nov 20 04:06:34 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
docstring_options was added in boost 1.34 - macro'd it out if you are
compiling earlier than that.
Revision
2063 -
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Modified
Wed Nov 19 04:59:43 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
- Removed some deprecated directories.
- Removed the pythfilter script for converting python doco into c++ stubs. The license was unspecified and we don't use it.
- Suppressed long long warnings on gcc (the Mac complained).
- svn:ignored Mac library suffixes in lib directory
Revision
2062 -
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Modified
Wed Nov 19 04:32:13 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed api_epydoc so that it actually rebuilds the doco when required.
Revision
2061 -
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Modified
Wed Nov 19 03:40:21 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixing some warnings from epydoc.
Disabled c++ signatures in python docstrings.
Removed references to Bruce in epydoc and the users guide.
Revision
2060 -
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Modified
Tue Nov 18 00:18:08 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Okay, so -isystem on the whole /usr/include directory appears to prevent
compiling. I suspect this might be something about changing the
priority of includes.
Fixed.
Revision
2059 -
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Modified
Mon Nov 17 22:57:50 2008 UTC
(13 years, 6 months ago)
by
gross
Original Path:
trunk
changes as suggested by phornby
Revision
2058 -
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Modified
Mon Nov 17 13:35:10 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Added (as comment for the moment) very aggressive intelc optimisation.
Also add options (as comments) to compile esysUtis and paso as DLL's so
I can eventually use the /fast option on the intelc compiler.
Revision
2057 -
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Modified
Mon Nov 17 13:30:46 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Prepare this file for the possibility of dynamic linkage.
SVN is doing something weird to me... I'm sure I committed this change already...
Revision
2056 -
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Modified
Mon Nov 17 13:27:55 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Prepare this file for the possibility of dynamic linkage.
Revision
2055 -
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Modified
Mon Nov 17 13:26:40 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
I have found that windows intelc /Qiop option,
which performs multi-file loop parallisation and vectorisation,
taking account of all the information in a single .obj file that it generates,
will get it's second phase link action right if it is linking
to DLL's rather than statically linking. This and other SConscripts
have been modified to take account of the options that select a static
or dynamic library.
Revision
2054 -
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Modified
Mon Nov 17 13:20:41 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Added the share_esysUtils and share_paso options
both defaulting to False, to allow finer control over
the nature of these libraries. Following log messages will explain.
Revision
2053 -
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Modified
Mon Nov 17 11:24:40 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Fix the test for erf() under intelc on windows to something more informative.
Revision
2052 -
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Modified
Mon Nov 17 11:15:07 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
MALLOC_CHUNK -> malloc_chunk in case there is a name-space
collision with a macro at some time in the future.
Revision
2051 -
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Modified
Mon Nov 17 09:24:02 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Now add the erf() test back for windows under the intelc compiler.
Revision
2050 -
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Modified
Mon Nov 17 08:59:57 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
OK, I have to include this file in the experiment
to use the intelc math library on windows.
Revision
2049 -
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Modified
Mon Nov 17 08:54:33 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
A little refinement of what to leave out of UnaryFuncs.h
if using the intelc compiler on windows.
Revision
2048 -
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Modified
Mon Nov 17 08:46:00 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Experimental commit to move the code to a windows box
on the other side of a firewall. Purpose: add support for the
imploved intelc math library on windows.
Revision
2045 -
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Modified
Sat Nov 15 14:08:09 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Make the windows intel compiler work harder at un-rolling loops and inlining absolutely everything
it can.
Revision
2044 -
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Modified
Sat Nov 15 13:19:49 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Consolidate many of the icl speed options into the /Ox option.
Revision
2043 -
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Modified
Sat Nov 15 12:53:27 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Make the intel compiler work for its money.
Revision
2042 -
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Modified
Sat Nov 15 12:52:46 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Prevent Windows compilers from keeping their own program database file.
This allows the use of the -jn scons option on Windows.
Revision
2041 -
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Modified
Sat Nov 15 12:45:15 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
ESYS_STATIC_LIB no longer needs to be defined in SConscript files.
Revision
2040 -
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Modified
Sat Nov 15 12:43:11 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Handle ESYS_STATIC_LIB more elegantly, and make it
a two-liner to turn it into a DLL if needed.
Revision
2039 -
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Modified
Sat Nov 15 09:15:46 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Remove the "const from the alpha argument of
Paso_SystemMatrix_MatrixVector_CSR_OFFSET0()
in order to match it's declaration.
This is C, and the double is passed by value, so alpha is
by nature const. This is C code, not C++. The const keyword has no place in C.
Revision
2038 -
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Modified
Fri Nov 14 00:12:58 2008 UTC
(13 years, 6 months ago)
by
ksteube
Original Path:
trunk
Change -isystem to point to boost_path and python_path instead of to /usr/include
Revision
2037 -
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Modified
Thu Nov 13 06:17:12 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed some warnings in the unit tests.
Added support for symmetric and nonsymmetric operations on LazyData.
Revision
2036 -
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Modified
Thu Nov 13 04:35:06 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
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A fix to deal with boost1.34s badness
Revision
2035 -
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Modified
Thu Nov 13 03:16:09 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Putting poisson.py back
Revision
2034 -
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Modified
Thu Nov 13 03:03:42 2008 UTC
(13 years, 6 months ago)
by
artak
Original Path:
trunk
variable <set> is initilized to get rid of compiler warnning errors. finley/src/Quadrature.c
Revision
2033 -
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Modified
Wed Nov 12 08:14:11 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
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As in the last message, add an extra CPPDEFINE to py_local_wrapper_env
Revision
2032 -
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Modified
Wed Nov 12 08:11:19 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
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Missed an extra additional CPPDEFINES for the py_wrapper_local_env.
Revision
2031 -
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Modified
Wed Nov 12 08:02:33 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Need finer control than INTERFACE_STATIC_LIB could exert. Now there is a
XXX_STATIC_LIB for each lib.
Revision
2030 -
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Modified
Wed Nov 12 07:34:08 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
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Fix the undef'fing of _DLL_API in windows case.
Revision
2029 -
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Modified
Wed Nov 12 07:27:05 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
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Test a more elegant way of handling XXX_DLL_API macros.
Revision
2028 -
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Modified
Tue Nov 11 03:07:59 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
add the test for __const definition because recent changes
have broken the windows compile of paso.
Fingers crossed this does not break anything else.
Revision
2027 -
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Modified
Tue Nov 11 02:52:24 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Ensure ESCRIPT_EXPORTS is defined only while compiling escript on windows.
A similar comment applies to FINLEY_EXPORTS.
SConstruct:
Fixed a comment.
reformatted the Export() call, and added IS_WINDOWS_PLATFORM to the exports.
Revision
2026 -
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Modified
Tue Nov 11 01:56:54 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
I have changed the default scons options for gcc to be much more picky about warnings.
By default warnings will be treated as errors; so a program with warnings won't compile.
If you need to turn this off, usewarnings=no will work.
The previous usepedantic oprtion is no longer turned on by default.
This should have no effect on any of the other compilers.
If anyone wants to jump in and supply sensible values for the fatalwarnings variable for their favourite compiler go ahead.
Revision
2025 -
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Modified
Tue Nov 11 00:18:33 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
__const on some strings
Revision
2021 -
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Modified
Mon Nov 10 14:07:49 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Use the NO_ARG trick on the PROC_OP macro expansions.
Revision
2020 -
Directory Listing
Modified
Mon Nov 10 14:02:17 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
THROW_ANY is dead. Pls read comments in esysUtils/src/system_dep.h
Revision
2019 -
Directory Listing
Modified
Mon Nov 10 13:49:00 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Yet another concerted effort to handle missing macro arguments
in a portable way.
Revision
2018 -
Directory Listing
Modified
Mon Nov 10 13:31:43 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Only import mathimf.h on win32 with intelc. Allow others to use the
standard math.h
change the #ifndef const -> #ifndef __const (oops!!)
Revision
2017 -
Directory Listing
Modified
Mon Nov 10 13:19:38 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Tighten the test for including mathimf.h to be windows specific.
Also another experiment in eliminating THROW_ANY
Revision
2014 -
Directory Listing
Modified
Mon Nov 10 12:44:51 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Refine the intelc compiler options, and link to the dll version of libguide.
Revision
2013 -
Directory Listing
Modified
Mon Nov 10 12:16:32 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Add the tools_names vars to control the compiler toolset scons uses
on windows platforms. (See cgisrv3_options.py for example of use).
Revision
2012 -
Directory Listing
Modified
Mon Nov 10 12:13:45 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Grew tired of having to edit SConstruct every time I changed from
MSVC to intelc. Added the tools_names option to allow control of tools
in the Environment call from the options file. This only applies to
the windows branch at present.
Revision
2011 -
Directory Listing
Modified
Mon Nov 10 10:54:38 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Commit this options file because cgisrv3 is to be the windows auto build and test machine.
Revision
2009 -
Directory Listing
Modified
Mon Nov 10 10:01:50 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Simplify the _del_ method's file closure and unlinking based upon mkstemp's advertised
behaviour.
Revision
2008 -
Directory Listing
Modified
Mon Nov 10 08:59:14 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
Signed/unsigned comparisons eliminated (just loop variables, easy fix).
Revision
2007 -
Directory Listing
Modified
Mon Nov 10 06:34:11 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Added a private operator= to Taipan to prevent people from copying trying to copy instances.
Not that we have any of that.... but if someone ever tries, we'll be ready for them.
I have come to the conclusion that -Weffc++ is not usable for us. Its output is too noisy complaining about classes which we do not control.
Revision
2006 -
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Modified
Mon Nov 10 03:07:08 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Updating svn:ignore properties.
Revision
2005 -
Directory Listing
Modified
Mon Nov 10 01:21:39 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Bringing all changes across from schroedinger.
(Note this does not mean development is done, just that it will happen
on the trunk for now).
If anyone notices any problems please contact me.
Revision
1991 -
Directory Listing
Modified
Fri Nov 7 04:32:38 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
finley: Constify two variables.
Revision
1990 -
Directory Listing
Modified
Fri Nov 7 04:19:07 2008 UTC
(13 years, 6 months ago)
by
ksteube
Original Path:
trunk
Changes to avoid compiler warnings
Finley files now pass -Wall on gcc 4.3.2
saveVTK.c: replaced printf(string) with printf("%s", string)
MeshAdapterFactory.cpp: moved a few lines to avoid possible use of uninitialized vars
MeshAdapter.cpp: initialized ncdims in mesh dump
There is still a warning from a boost include file
Revision
1989 -
Directory Listing
Modified
Fri Nov 7 04:11:33 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
modellib: completely revised tsunami script.
-updated finley usage (due to changed interface)
-moved VTK stuff to one place making it easy to disable (and use dumps instead)
-removed dependency on non-existing data server - script now depends on saved coastline/bathymetry data files OR calls scripts to create the data on the fly.
-PDE and triangulation code is unchanged except indentation updates
Revision
1986 -
Directory Listing
Modified
Thu Nov 6 23:33:14 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Warning removal
Revision
1985 -
Directory Listing
Modified
Thu Nov 6 22:13:54 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
finley: Fixed compiler warnings (uninitialized vars). This is only a temporary hack. At a later stage this beast will be rewritten...
Revision
1984 -
Directory Listing
Modified
Thu Nov 6 22:10:28 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
Added shake75 build options file
Revision
1983 -
Directory Listing
Modified
Thu Nov 6 22:00:18 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
Paso: Fixed compilation with OpenMPI
Revision
1982 -
Directory Listing
Modified
Thu Nov 6 06:16:07 2008 UTC
(13 years, 6 months ago)
by
ksteube
Original Path:
trunk
Changed options file for host shake71 to rodinia
Revision
1981 -
Directory Listing
Modified
Thu Nov 6 05:27:33 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
More warning removal.
Revision
1980 -
Directory Listing
Modified
Thu Nov 6 04:45:08 2008 UTC
(13 years, 6 months ago)
by
artak
Original Path:
trunk
sum variable is removed from #pragma
Revision
1979 -
Directory Listing
Modified
Thu Nov 6 04:29:58 2008 UTC
(13 years, 6 months ago)
by
artak
Original Path:
trunk
warning removal
Revision
1978 -
Directory Listing
Modified
Thu Nov 6 04:21:23 2008 UTC
(13 years, 6 months ago)
by
artak
Original Path:
trunk
MINRES, TFQMR, GS are added
Revision
1977 -
Directory Listing
Modified
Thu Nov 6 03:54:35 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
More warning removal.
Revision
1976 -
Directory Listing
Modified
Thu Nov 6 03:14:52 2008 UTC
(13 years, 6 months ago)
by
artak
Original Path:
trunk
unused variables are removed to get rid of compiler warnings
Revision
1975 -
Directory Listing
Modified
Thu Nov 6 03:07:02 2008 UTC
(13 years, 6 months ago)
by
artak
Original Path:
trunk
Some variables are initialized to get rid of compiler warnings
Revision
1974 -
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Modified
Thu Nov 6 02:40:10 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Changing ZERO and ONE in Solver.h to PASO_ZERO and PASO_ONE.
Changed three static vars to #defines
Revision
1973 -
Directory Listing
Modified
Thu Nov 6 02:31:37 2008 UTC
(13 years, 6 months ago)
by
lgraham
Original Path:
trunk
Tidied up the white space between the equations and fixed gramma in the Rayleigh-Taylor Instability (levelset) tutorial.
Will include Escript code soon.
Revision
1971 -
Directory Listing
Modified
Thu Nov 6 01:11:23 2008 UTC
(13 years, 6 months ago)
by
artak
Original Path:
trunk
Some typos fixed. The rearagments of figure 1, and footnotes added to avoid confusion.
Revision
1967 -
Directory Listing
Modified
Wed Nov 5 08:49:39 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
changerd __del__ to close the tmp file before attempting to unlink it. This is required on windows, and probably wise on all platforms.
Revision
1966 -
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Modified
Wed Nov 5 04:59:22 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Some more fixes to user guide.
Revision
1965 -
Directory Listing
Modified
Wed Nov 5 03:24:09 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
Fixed working directory of the seismic_wave example.
Revision
1964 -
Directory Listing
Modified
Wed Nov 5 03:21:31 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
user's guide: Reviewed and updated pyvisi documentation.
Revision
1963 -
Directory Listing
Modified
Wed Nov 5 03:20:24 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
user's guide: Fixed some typos.
Revision
1962 -
Directory Listing
Modified
Tue Nov 4 07:17:31 2008 UTC
(13 years, 6 months ago)
by
gross
Original Path:
trunk
there is an offet missing when copy data to a data point.
Revision
1961 -
Directory Listing
Modified
Tue Nov 4 06:09:33 2008 UTC
(13 years, 6 months ago)
by
caltinay
Original Path:
trunk
Pyvisi: Fixed wording/typos in readme file.
Revision
1960 -
Directory Listing
Modified
Tue Nov 4 05:50:41 2008 UTC
(13 years, 6 months ago)
by
artak
Original Path:
trunk
some unsed variables are removed
Revision
1959 -
Directory Listing
Modified
Tue Nov 4 01:49:19 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
More fixes to doco.
Revision
1958 -
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Modified
Mon Nov 3 23:47:16 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed URL to python doc in guide_defs
Revision
1957 -
Directory Listing
Modified
Mon Nov 3 06:14:18 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Some fixes to user guide
Revision
1956 -
Directory Listing
Modified
Mon Nov 3 05:08:42 2008 UTC
(13 years, 6 months ago)
by
gross
Original Path:
trunk
bug fixed.
Revision
1955 -
Directory Listing
Modified
Fri Oct 31 04:01:24 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed some macros so they don't add extra spaces.
Switched from input to include for chapters for faster recompile.
Revision
1954 -
Directory Listing
Modified
Fri Oct 31 03:22:34 2008 UTC
(13 years, 6 months ago)
by
artak
Original Path:
trunk
condition is added to check wheter row sum is ZERO and some new coarsening algorithm is also added
Revision
1953 -
Directory Listing
Modified
Thu Oct 30 07:01:11 2008 UTC
(13 years, 6 months ago)
by
phornby
Original Path:
trunk
removed one signed/unsigned value comparison. The remaining one at line 863 is far more difficult to deal with.
Revision
1952 -
Directory Listing
Modified
Thu Oct 30 06:16:00 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
Fixed /* in a comment.
The rank of a datapoint is now an unsigned int.
Revision
1946 -
Directory Listing
Modified
Wed Oct 29 05:48:53 2008 UTC
(13 years, 6 months ago)
by
jfenwick
Original Path:
trunk
A cleanup of some of the problems I found doing a Wall compile.
Removed some commented out lines.
Swapped some member initialisers.
Removed virtual qualifiers from some methods in FunctionSpace.
Fixed some unused or (possibly) uninitialised variables.
Revision
1942 -
Directory Listing
Modified
Wed Oct 29 03:29:35 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
remove unused rtmp var.
Revision
1941 -
Directory Listing
Modified
Tue Oct 28 07:51:49 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
Updated installation directions in the User Guide to simply
point to the instructions on the wiki, which I have already
updated extensively.
Revision
1940 -
Directory Listing
Modified
Tue Oct 28 03:50:01 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
get Gauss-Seidel factorization moved solverAMG to getAMG. Stopping criterium for corsening changed to depend to the number of unknowns left
Revision
1939 -
Directory Listing
Modified
Tue Oct 28 03:47:08 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
get Gauss-Seidel factorization moved solverAMG to getAMG. Stopping criterium for corsening changed to depend to the number of unknowns left
Revision
1937 -
Directory Listing
Modified
Tue Oct 28 01:26:55 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
Created a mid-sized test suite 'scalable_tests' as an alternative to 'all_tests'.
These run on small-ish systems and also on all 512 cores of Savanna.
Most features are covered, but it's better to use 'all_tests'.
Revision
1936 -
Directory Listing
Modified
Mon Oct 27 23:30:57 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
checks openMP for proper break usage
Revision
1934 -
Directory Listing
Modified
Mon Oct 27 05:03:12 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
some typos
Revision
1933 -
Directory Listing
Modified
Mon Oct 27 04:58:59 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
Gauss-Seidel which takes into acound initianl x
Revision
1932 -
Directory Listing
Modified
Mon Oct 27 04:15:00 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
one input parameter is added
Revision
1931 -
Directory Listing
Modified
Mon Oct 27 01:31:28 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
Direct solver is added to solve_AMG. It is now working but I guess need optimization.
Revision
1930 -
Directory Listing
Modified
Fri Oct 24 09:35:55 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
revert to MS compiler for now.
Revision
1929 -
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Modified
Fri Oct 24 09:20:17 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
abortive attempt to automate the choice of windows compiler based uponj the options file.
Revision
1928 -
Directory Listing
Modified
Fri Oct 24 08:20:23 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Pass 2 at getting openMP going on windows.
Problem is incompatible mathinf.h and system math.h at this point.
Revision
1927 -
Directory Listing
Modified
Fri Oct 24 06:24:49 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
First cut at omp options for windows.
Revision
1923 -
Directory Listing
Modified
Thu Oct 23 12:53:39 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
The calls to Finley routines turned out to be cut & past errors, easily fixed.
Revision
1921 -
Directory Listing
Modified
Thu Oct 23 11:32:24 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Jump through hoops to meet the OPENMP 2.5 restrictions on loop variables.
It's all ready for OPENMP 3.0 improvments, and should compile cleanly on other platforms.
Revision
1920 -
Directory Listing
Modified
Thu Oct 23 10:05:27 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
remove unused vars.
Revision
1919 -
Directory Listing
Modified
Thu Oct 23 10:03:10 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Remove un-used vars introduced by my _WIN32 compilation branch. This is a checkin to allow a test of both compilation brabches.
Revision
1918 -
Directory Listing
Modified
Thu Oct 23 09:14:13 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
fix a signed and unsigned integer comparison. As your meshes get larger, this type of error will bite.
Revision
1917 -
Directory Listing
Modified
Thu Oct 23 09:09:31 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Remove unused vars, do a bit of standardising of indentation, and use the new Pattern_coupling.h to eliminate some implicit function declarations in Solver_AMG.c
Revision
1916 -
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Modified
Thu Oct 23 08:51:36 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
This is a fake commit, to note that
Finley_IndexList_insertIndex is being called from paso's Pattern.c.
I was under the impresssion that this was a violation of the module rule forbidding
paso from calling Finley code. I have not fixed this, since I am not the
best person to formulate the workaround. My immediate suggestion would be to move the
functionality into paso, and call it from Finley. However, I'm sure there is a better way.
Revision
1915 -
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Modified
Thu Oct 23 08:40:09 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
As far as I can tell, just the new Pattern_coupling.h and Pattern_coupling.h
are all that's needed to compile Pattern_coupling.c
Revision
1914 -
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Modified
Thu Oct 23 08:31:22 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Adding include files back to keep Altix happy.
Revision
1913 -
Directory Listing
Modified
Thu Oct 23 08:27:33 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Create Pattern_coupling.h as there were too many modules that implicitly defined these
functions. This checkin is to test the minimum number of files this change allows me to
include to get Pattern_coupling.c to compile correctly on the Altix.
Revision
1912 -
Directory Listing
Modified
Thu Oct 23 05:08:31 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
Finished wrapper script by setting PATH.
The wrapper script reproduces the environment of the person who built
the software + values specified in his hostname_options.py file. A
user can run a python script without setting any environment variables
or loading any SGI modules.
Revision
1909 -
Directory Listing
Modified
Thu Oct 23 01:47:50 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
Updated the wrapper script to set MPI_NUM_MEMORY_REGIONS=0 to avoid
bug where truncated messages are sent in hybrid runs under MPT MPI
Revision
1907 -
Directory Listing
Modified
Wed Oct 22 11:41:18 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Mesh_read.c - remove a debug printout introduced by me (oops).
Pattern_coupling.c - remove declaration of naib where it was not used, and remove naib frpm
omp pragmas where it was not declared, and not used.
Apparently cognac.ivec.org did not like this??
Revision
1906 -
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Modified
Wed Oct 22 08:48:32 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
This file was pining for a final return at its end.
Revision
1905 -
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Modified
Wed Oct 22 08:40:05 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
I did a lot of rationalising of the indentation, which looks like an alarming number of changes. I just got sick of my editor getting confused about what the indent was in this function as opposed to the last one I was working on.
The real mods. are trivial, arising from the fact that 'nix'es will write 1e-05 (say), while winblows will write 1e-005. This causes string comparisons that check the mesh file generation to fail. This, combined with the more pedantic behaviour of unlink() made pycad very fragile on windows. All fixed now.
Test on the 'nixes tonight.
May I ask for a hold off on the branch merge, Joel, till I get this stable on all platforms, and deal with the usual unused vars. that pop up from all the ifdefs?
Revision
1904 -
Directory Listing
Modified
Wed Oct 22 08:27:56 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
This now passes on windows. The main issue was that __del__ was being called when there was no open script or mesh file??? Could not fathom why, but added an extra test in __del__ to make sure the files were actually open before closing & unlinking. It may be better to deal with the opening, writing, closing, os.system call, and final unlinking of the script file in getMeshHandler(). That way all manipulations are local, and only the mesh file need be handled in a remote piece of code like __del__.
Not tested on Altix or linux yet.... get to that tonight.
Revision
1902 -
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Modified
Wed Oct 22 03:54:14 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
some bugs fixed in coresening methods
Revision
1900 -
Directory Listing
Modified
Mon Oct 20 07:33:42 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Fake commit to sync with my windows machine.
Fix looks like like it worked on Dedbian. Thanks.
Revision
1897 -
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Modified
Mon Oct 20 00:32:30 2008 UTC
(13 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Modified Data::toString() so it doesn't throw on DataEmpty.
Added setEscriptParamInt and getEscriptParamInt as free functions.
At the moment all they do is allow you to set the param TOO_MANY_LINES.
This is used to determine when printing a Data object will show you the
points and when it will print a summary.
I've set the default value back to 80 lines.
If you need to see more lines use (in python):
setEscriptParamInt("TOO_MANY_LINES",80000)
Revision
1896 -
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Modified
Sun Oct 19 23:16:21 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
small fixes.
Revision
1895 -
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Modified
Sat Oct 18 11:06:38 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Remove the amalgamated test suite because it consumes too much resource on winblows
Revision
1894 -
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Modified
Sat Oct 18 11:00:08 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Break run_linearPDEsOnFinley.py into 3 separate test modules to avoid crashes on winblows
Revision
1893 -
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Modified
Fri Oct 17 09:59:39 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
brakets in SCAN error detection were missing.
Revision
1892 -
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Modified
Fri Oct 17 00:55:59 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
memory leak is fixed
Revision
1891 -
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Modified
Fri Oct 17 00:15:17 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
minor
Revision
1890 -
Directory Listing
Modified
Fri Oct 17 00:14:22 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
Current version of AMG. check levels for stoping applies presmoothing, but not ready yet
Revision
1887 -
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Modified
Wed Oct 15 03:26:25 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
Fixed two typos that stopped the test suite from running.
Also, gcc 4.3.2 issued several warnings not seen before:
ignoring the return value of fscanf and using the wrong format
with printf.
Revision
1883 -
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Modified
Tue Oct 14 04:46:27 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
< changed to >=
Revision
1882 -
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Modified
Tue Oct 14 04:39:02 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
minor
Revision
1881 -
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Modified
Tue Oct 14 04:34:09 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
pattern multiply, binary operation are added
Revision
1880 -
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Modified
Tue Oct 14 04:23:21 2008 UTC
(13 years, 7 months ago)
by
caltinay
Original Path:
trunk
s/==/=/ in one more place in generate_dumps.py
Revision
1878 -
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Modified
Tue Oct 14 03:39:13 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
new version of JacobiFree Newton GMRES + test added.
Revision
1877 -
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Modified
Tue Oct 14 02:58:39 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
convection.py checkpointing uses mkdir/rmdir, and under MPI there
was a race condition.
mkdir needs to be run on only one CPU and then a barrier to prevent
working processors from using the directory before it exists.
Added methods domain.MPIBarrier and domain.onMasterProcessor() to
implement this technique.
A more general solution might be possible in the future.
Revision
1876 -
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Modified
Mon Oct 13 10:19:17 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
ftell lies on windows, so there is a win32 branch that reads the tag lines char by char.
Revision
1875 -
Directory Listing
Modified
Mon Oct 13 10:15:04 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Add a TMPMEMREALLOC macro
Revision
1874 -
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Modified
Mon Oct 13 05:15:55 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
num_equations -> numEquations
Revision
1873 -
Directory Listing
Modified
Mon Oct 13 04:32:22 2008 UTC
(13 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Fixed a compile error under MPI.
Cleaned up a comment.
Revision
1872 -
Directory Listing
Modified
Mon Oct 13 00:18:55 2008 UTC
(13 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Closing the moreshared branch
Revision
1870 -
Directory Listing
Modified
Thu Oct 9 08:49:53 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
a bug in the nc test fixed (hopefully.)
Revision
1869 -
Directory Listing
Modified
Thu Oct 9 08:34:40 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
typo fixed.
Revision
1867 -
Directory Listing
Modified
Thu Oct 9 05:35:24 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
New method for unit testing to compare two saveVTK files.
Can detect same-ness even if the nodes are re-ordered.
To do: issue with contact elements in that identical
nodes confuses test for node re-ordering.
Revision
1866 -
Directory Listing
Modified
Thu Oct 9 04:01:06 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
Repair to saveVTK similar to revision 1677 (there we got the number of offsets correct
and in this revision we got the number of types correct).
In case of MPI > 1 do not run saveDX tests since saveDX is not MPI parallel.
Revision
1863 -
Directory Listing
Modified
Wed Oct 8 23:54:00 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
Improved test for off-screen rendering with pyvisi
Revision
1862 -
Directory Listing
Modified
Wed Oct 8 06:30:50 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
Should work now
Revision
1861 -
Directory Listing
Modified
Wed Oct 8 04:20:07 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
minres test are switched on
Revision
1860 -
Directory Listing
Modified
Wed Oct 8 04:07:10 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
minor bug is fixed
Revision
1859 -
Directory Listing
Modified
Wed Oct 8 03:03:37 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
first version of testing for transport solver.
Revision
1857 -
Directory Listing
Modified
Tue Oct 7 23:58:44 2008 UTC
(13 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Updated doco to describe the behaviour of inf, sup and Lsup for cases
where none of the tags in use in the domain have values.
It confused me when I was testing.
Revision
1856 -
Directory Listing
Modified
Tue Oct 7 07:10:47 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
The NC dump tests work now with MPI.
In fact the old test did not exactly what it supposed to
Revision
1855 -
Directory Listing
Modified
Tue Oct 7 05:25:30 2008 UTC
(13 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Modified Data::copyWithMask to have a less cryptic implementation.
Revision
1854 -
Directory Listing
Modified
Tue Oct 7 01:38:55 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
local_NE0 typo
Revision
1848 -
Directory Listing
Modified
Mon Oct 6 01:45:59 2008 UTC
(13 years, 7 months ago)
by
jfenwick
Original Path:
trunk
Fixed copyright notice on linux_gcc_eg_options.py
Revision
1847 -
Directory Listing
Modified
Fri Oct 3 06:45:34 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
OK, these get the blahcpp.so names correct now.
Revision
1846 -
Directory Listing
Modified
Fri Oct 3 06:42:35 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
bug fixed.
Revision
1845 -
Directory Listing
Modified
Fri Oct 3 05:23:47 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
some naming problem for the installation of escriptcpp and finleycpp. Apparently this came is trough some mofifications in windows
Revision
1844 -
Directory Listing
Modified
Fri Oct 3 05:19:23 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
This is prep for AMG solver. It is only a copy from RILU not actual AMG
Revision
1843 -
Directory Listing
Modified
Fri Oct 3 04:21:29 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
forgot this one
Revision
1842 -
Directory Listing
Modified
Fri Oct 3 04:18:26 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
Gauss-Seidel preconditioner now works for any number of sweeps. One need to specify parameter in options->sweep=2 (by default)
Revision
1841 -
Directory Listing
Modified
Fri Oct 3 03:57:52 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
modification on LinearPDE class and a first version of Transport class
Revision
1840 -
Directory Listing
Modified
Fri Oct 3 03:16:11 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
These now install the correct .pyd files on windows.
Revision
1839 -
Directory Listing
Modified
Fri Oct 3 02:06:00 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
temporary fix to get run_tests working
Revision
1838 -
Directory Listing
Modified
Fri Oct 3 02:05:01 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
add 4 missing ESCRIPT_DLL_API that prevented linking.
Revision
1837 -
Directory Listing
Modified
Fri Oct 3 02:03:07 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Just getting run_tests going. I now recall that windows python will look for a .pyd
and not a .dll. So somehow we must install the python wrapper .dlls as a .pyds
I'll get to that later.
Revision
1836 -
Directory Listing
Modified
Fri Oct 3 01:53:50 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
do some code reuse to ease upkeep.
Revision
1835 -
Directory Listing
Modified
Thu Oct 2 10:18:03 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
There is no unistd.h on windows, as the name would imply.
I assume it is included for gethostname only.
Revision
1834 -
Directory Listing
Modified
Thu Oct 2 09:48:45 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Remove a signed/unsigned comparison
Revision
1833 -
Directory Listing
Modified
Thu Oct 2 09:47:24 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
One cannot give a static function external linkage
(eigenvalues_and_eigenvectors and swapaxes).
I'm not even sure the external linkage is needed for inline functions.
Revision
1832 -
Directory Listing
Modified
Thu Oct 2 09:33:48 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
This one is closer to working.
Revision
1831 -
Directory Listing
Modified
Thu Oct 2 08:55:16 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
First cut at a windows option file. I probably does not work. This is a backup commit.
Revision
1830 -
Directory Listing
Modified
Thu Oct 2 06:51:48 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
Tests using JoinFaces() and domain.write() will not work under MPI and must be disabled for num procs > 1
Revision
1829 -
Directory Listing
Modified
Thu Oct 2 05:40:30 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
Adjusted tests for MPI.
Enabled two tests in run_inputOutput.py for order=2 after recent bugfix.
Revision
1827 -
Directory Listing
Modified
Thu Oct 2 04:28:07 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
MPI parallelized dump/load for Constant and Tagged data.
run_escriptOnFinley.py runs hybrid MPI/OpenMP.
Revision
1826 -
Directory Listing
Modified
Thu Oct 2 03:13:27 2008 UTC
(13 years, 7 months ago)
by
phornby
Original Path:
trunk
Updated for new build system.
Still generating std::bad_alloc deep in VTK.
Revision
1823 -
Directory Listing
Modified
Wed Oct 1 05:56:05 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
GS preconditioner now works for block_size 2 and 3 as well. Sweep parameter introdiced, but not working yet
Revision
1819 -
Directory Listing
Modified
Tue Sep 30 05:58:06 2008 UTC
(13 years, 7 months ago)
by
artak
Original Path:
trunk
Firs version of symmetric Gauss-Seidel preconditioner with coloring
Revision
1818 -
Directory Listing
Modified
Tue Sep 30 04:09:13 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
chnaged the wrong line
Revision
1817 -
Directory Listing
Modified
Tue Sep 30 04:03:40 2008 UTC
(13 years, 7 months ago)
by
ksteube
Original Path:
trunk
Install runmodel.py into bin
Remove obsolete script esysXML.py
Revision
1816 -
Directory Listing
Modified
Tue Sep 30 03:40:51 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
bug with MPI fixed (relevant for cases of n0 and n1 < num processors)
Revision
1815 -
Directory Listing
Modified
Tue Sep 30 02:10:32 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
tools to generate dump files for relevant data and mesh types
Revision
1814 -
Directory Listing
Modified
Tue Sep 30 00:21:21 2008 UTC
(13 years, 7 months ago)
by
gross
Original Path:
trunk
Contact elements have the right tyoe now.
Revision
1812 -
Directory Listing
Modified
Fri Sep 26 00:19:18 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Re-ordered the methods in paso/src/SolverFCT_solve.c and resolved several compiler warnings
Revision
1811 -
Directory Listing
Modified
Thu Sep 25 23:11:13 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Copyright updated in all files
Revision
1810 -
Directory Listing
Modified
Thu Sep 25 06:53:26 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Updated copyright for a few remaining python files
Revision
1809 -
Directory Listing
Modified
Thu Sep 25 06:43:44 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Copyright updated in all python files
Revision
1808 -
Directory Listing
Modified
Thu Sep 25 03:14:56 2008 UTC
(13 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Removed some commented out lines.
Modified DataExpanded to not throw when creating objects with zero
samples.
Modified toString() to report "(data contains no samples)" rather than
printing a blank line.
Modified DataExpanded::dump() and load so that they do not attempt so
save/load the ids and data fields if the data object contains no
samples.
Revision
1807 -
Directory Listing
Modified
Thu Sep 25 01:04:51 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
The new MPI parallel ReadMesh is now the default after having passed
all tests both with and without MPI.
If you have been using ReadMesh you should notice no difference.
If you were using ReadMeshMPI then change to ReadMesh.
Revision
1806 -
Directory Listing
Modified
Thu Sep 25 00:36:10 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Cleaned up use of gethostname
Revision
1805 -
Directory Listing
Modified
Wed Sep 24 23:39:00 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Added python-level methods getMPISizeWorld() and getMPIRankWorld() for MPI process info.
Test suite run_inputOutput.py runs on any number of cores now, hybrid may still be a problem.
Revision
1804 -
Directory Listing
Modified
Wed Sep 24 07:52:19 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
a robister version of the upwinding scheme
Revision
1803 -
Directory Listing
Modified
Wed Sep 24 06:20:29 2008 UTC
(13 years, 8 months ago)
by
jfenwick
Original Path:
trunk
All about making DataEmpty instances throw.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Exposed getDim from AbstractDomain to python to fix bug.
Added isEmpty member to DataAbstract to allow it to throw is queries are
made about a DataEmpty instance.
Added exceptions to DataAbstract, DataEmpty and Data to prevent calls
being made against DataEmpty objects.
The following still work as expected on DataEmpty instances
copy, getDomain, getFunctionSpace, isEmpty, isExpanded, isProtected,
isTagged, setprotection.
You can also call interpolate, however it should throw if you try to
change FunctionSpaces.
Revision
1802 -
Directory Listing
Modified
Tue Sep 23 01:03:29 2008 UTC
(13 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Added canTag methods to FunctionSpace and AbstractDomain (and its
offspring).
This checks to see if the domain supports tags for the given type of
function space.
Constructors for DataTagged now throw exceptions if you attempt to make
a DataTagged with a FunctionSpace which does not support tags.
To allow the default constructor to work, NullDomain has a single
functioncode which "supports" tagging.
Fixed a bug in DataTagged::toString and DataTypes::pointToString.
Added FunctionSpace::getListOfTagsSTL.
algorithm(DataTagged, BinaryFunction) in DataAlgorithm now only
processes tags known to be in use.
This fixes mantis issue #0000186.
Added comment to Data.h intro warning about holding references if the
underlying DataAbstract changes.
_python_ unit tests have been updated to test TaggedData with invalid
FunctionSpaces and to give the correct answers to Lsup etc.
Revision
1801 -
Directory Listing
Modified
Fri Sep 19 01:37:09 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Fixed serialization of I/O for MPI...code didn't compile without MPI
Revision
1800 -
Directory Listing
Modified
Thu Sep 18 05:28:20 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Serialized parallel I/O when writing mesh or data to NetCDF file on multiple MPI processors.
Added domain method getMPIComm() to complement getMPISize() and getMPIRank().
Revision
1799 -
Directory Listing
Modified
Wed Sep 17 06:33:18 2008 UTC
(13 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Added Data::copySelf() [Note: this is exposed as copy() in python].
This method returns a pointer to a deep copy of the target.
There are c++ tests but no python tests for this yet.
All DataAbstracts now have a deepCopy() which simplifies the
implementation of the compy methods.
Revision
1798 -
Directory Listing
Modified
Wed Sep 17 06:21:12 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
Fixes for the JacobeanFreeNewton scheme. Still needs to be tested under OPENMP but runs under MPI.
Revision
1797 -
Directory Listing
Modified
Wed Sep 17 03:39:34 2008 UTC
(13 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Putting MINRES.c back after it went missing.
Revision
1796 -
Directory Listing
Modified
Wed Sep 17 01:45:46 2008 UTC
(13 years, 8 months ago)
by
jfenwick
Original Path:
trunk
Merged noarrayview branch onto trunk.
Revision
1792 -
Directory Listing
Modified
Tue Sep 16 08:28:25 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
bug fixed: obviously in rather than NULL should be returned
Revision
1791 -
Directory Listing
Modified
Tue Sep 16 08:21:57 2008 UTC
(13 years, 8 months ago)
by
phornby
Original Path:
trunk
I know this ia a no no, but it was necessary to get scons run_tests, going on my debian box,
even with usepedanitc off.
My g++ version is 4.3.1, that may explain the different behavour.
#include'd cstdlib. This checkin is to see if this hurts the other ports.
Revision
1790 -
Directory Listing
Modified
Tue Sep 16 07:45:38 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
test is obsolet
Revision
1789 -
Directory Listing
Modified
Mon Sep 15 08:34:44 2008 UTC
(13 years, 8 months ago)
by
phornby
Original Path:
trunk
Near line 288 of SConstruct.
Fixed the HAVE_GETHOSTNAME environment variable setting.
The the test had a "not" that should not be there,
and the wrong env was being Append()'ed.
On linux, this resulted in HAVE_GETHOSTNAME not being -D'ed.
the strcpy at line 78 of
escript/src/Utils.cpp
was flagged by gcc as an error because
strcpy is not declared on the compilation branch
that compiles if HAVE_GETHOSTNAME is not set.
I have not fixed this.
Also, the hostname buffer is only 64 char long.
Why limit the length of the hostname,
admitting buffer overflow, in a .cpp file?
Why use strcpy in C++?
Revision
1788 -
Directory Listing
Modified
Mon Sep 15 02:20:20 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
levelset in the way laurent did it.
Revision
1787 -
Directory Listing
Modified
Mon Sep 15 01:36:34 2008 UTC
(13 years, 8 months ago)
by
artak
Original Path:
trunk
MINRES solver is added to escript. Additional 16 tests are added to run_simplesolve for MINRES and TFQMR solvers
Revision
1785 -
Directory Listing
Modified
Thu Sep 11 23:35:42 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Config variables such as boost_lib_path and netcdf_lib_path are stored in
the wrapper script bin/finleypython so the user gets the proper environment
automatically
Revision
1780 -
Directory Listing
Modified
Thu Sep 11 04:42:15 2008 UTC
(13 years, 8 months ago)
by
artak
Original Path:
trunk
Now works with block size 2 and 3 as well
Revision
1778 -
Directory Listing
Modified
Tue Sep 9 07:46:02 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
memry leak fixed
Revision
1777 -
Directory Listing
Modified
Tue Sep 9 06:39:37 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Implemented Lutz fix for MPI mesh dump/load using NetCDF
Revision
1776 -
Directory Listing
Modified
Tue Sep 9 06:03:53 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Cleared away some debugging prints
Revision
1774 -
Directory Listing
Modified
Tue Sep 9 03:50:45 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
bug: unitialized values
Revision
1772 -
Directory Listing
Modified
Tue Sep 9 00:18:49 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Added tests for reading a finley mesh and comparing it to a newly-created
mesh of the same type
Moved my mesh comparison function to be a class method
Revision
1771 -
Directory Listing
Modified
Mon Sep 8 22:47:55 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Removed failing test until we fix a bug.
Fixed several compiler warnings.
Revision
1770 -
Directory Listing
Modified
Mon Sep 8 06:58:47 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Detects an array reference out of bounds when running run_inputOutput.py
Revision
1769 -
Directory Listing
Modified
Mon Sep 8 04:34:33 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
test commit
Revision
1768 -
Directory Listing
Modified
Mon Sep 8 04:32:19 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
ld_lib_path had a path listed twice...removed one
Revision
1767 -
Directory Listing
Modified
Mon Sep 8 02:53:50 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
print statements removed
Revision
1766 -
Directory Listing
Modified
Mon Sep 8 02:51:14 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
code formatting
Revision
1765 -
Directory Listing
Modified
Mon Sep 8 02:49:57 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
some fixes for the case of empty processor
Revision
1764 -
Directory Listing
Modified
Mon Sep 8 02:48:26 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
type for the non mpi case fixed.
Revision
1763 -
Directory Listing
Modified
Mon Sep 8 02:47:55 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
more code formatting
Revision
1762 -
Directory Listing
Modified
Mon Sep 8 02:42:39 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
some formatting
Revision
1761 -
Directory Listing
Modified
Mon Sep 8 02:36:47 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
using MPI_Init_thread rather than MPI_Init to clarify the usage with mpi
Revision
1760 -
Directory Listing
Modified
Mon Sep 8 02:35:56 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
some renaming of variables to clarify what is going on
Revision
1759 -
Directory Listing
Modified
Mon Sep 8 02:31:22 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
MPI version plus some openmp optimization
Revision
1758 -
Directory Listing
Modified
Mon Sep 8 02:29:33 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
uses now memcpy rather than for loop
Revision
1757 -
Directory Listing
Modified
Mon Sep 8 02:28:38 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
no ifdef _OPENMP required
Revision
1756 -
Directory Listing
Modified
Mon Sep 8 01:45:46 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
First version of a wrapper script that sets LD_LIBRARY_PATH and PYTHONPATH
Not yet ready for general use
Revision
1755 -
Directory Listing
Modified
Mon Sep 8 01:34:40 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Added new field to NetCDF dump of mesh
Revision
1754 -
Directory Listing
Modified
Sun Sep 7 22:07:26 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Added new test suite run_inputOutput.py to systematically test I/O.
Can determine if two domains are same with Fourier analysis.
Added new method getNumDataPointsGlobal to return number of DPs of a distributed mesh.
Reading of tags in ReadMeshMPI failed occasionally, should be more robust now.
Revision
1753 -
Directory Listing
Modified
Sun Sep 7 22:01:23 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Test suite fails due to missing arg in call to Finley_Mesh_createMappings.
Added NULL arg, but still need to find proper fix as loadMesh does not work.
Adjusted SConstruct to delete pythonMPI if not compiled for MPI.
Revision
1750 -
Directory Listing
Modified
Wed Sep 3 23:09:29 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
small bug fixed
Revision
1749 -
Directory Listing
Modified
Wed Sep 3 07:25:01 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
fixes a problem with the saveVTK writing under mpi
Revision
1748 -
Directory Listing
Modified
Wed Sep 3 06:10:39 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
MPI parallelism for Data().dump and load. Use multiple NetCDF
files, one file per MPI process
Revision
1746 -
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Modified
Wed Sep 3 01:24:16 2008 UTC
(13 years, 8 months ago)
by
lgraham
Original Path:
trunk
Corrected plus (+) sign in Equation (2.54) for elastic tensor, and (2.60) for von Mises stress.
Revision
1745 -
Directory Listing
Modified
Wed Sep 3 00:41:24 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
MPI mesh_read was crashing if tags not present
Revision
1744 -
Directory Listing
Modified
Tue Sep 2 07:39:18 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Can now read and MPI distribute a finley mesh including the tags.
Revision
1743 -
Directory Listing
Modified
Tue Sep 2 00:54:05 2008 UTC
(13 years, 8 months ago)
by
ksteube
Original Path:
trunk
Avoid crash due to zero-length writes in MPI_File_write_ordered.
Write a space instead of empty string.
The space will be at the end of a line and cause no problem.
Revision
1742 -
Directory Listing
Modified
Mon Sep 1 05:55:00 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
tests for VTK writer rec9 and Hex27 added
Revision
1741 -
Directory Listing
Modified
Mon Sep 1 04:06:41 2008 UTC
(13 years, 8 months ago)
by
gross
Original Path:
trunk
VTK writer supports HEX27 and REC9 now.
Revision
1740 -
Directory Listing
Modified
Fri Aug 29 06:23:11 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
and some fixes for the GMSH reader
Revision
1739 -
Directory Listing
Modified
Fri Aug 29 06:19:53 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
Fix in the MPI mesh reader: Owner need to be set.
Revision
1738 -
Directory Listing
Modified
Fri Aug 29 05:06:45 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
some changes improving the robustness for MPI if the elements/processor is small
Revision
1737 -
Directory Listing
Modified
Fri Aug 29 03:01:29 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
the MaskFromBoundaryTag function didn't make much sense. The argument function_space is replaced by domain.
Revision
1736 -
Directory Listing
Modified
Fri Aug 29 02:23:16 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
This fixes a problem which is typically arising when using reduced order
with MPI and a "small" number of elements per processor. In this case it
can happen that the couple matrix is not using all entries sent to the
processor. The old implementations assumed that the indices will cover
the entire input. This assumption has been removed.
Revision
1735 -
Directory Listing
Modified
Fri Aug 29 00:18:26 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
This fixes a bug in the callculation of communication tables in
particular for the data to be send away. The problem was that the
previously used method based on the idea to use the elements stored on a
processor to decide what to send away is not suitable for the reduced
DOF. Now each processor sends a list of the DOFs it is expecting to its
naighbours.
Revision
1733 -
Directory Listing
Modified
Thu Aug 28 01:46:07 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
bug fix: if the numer of elements to be generated suppose to be zero
still face elements and nodes are generated. this is fixed now.
Revision
1732 -
Directory Listing
Modified
Wed Aug 27 05:47:03 2008 UTC
(13 years, 9 months ago)
by
ksteube
Original Path:
trunk
MPI read of finley mesh file working except for a bug related to mesh_prepare
Revision
1731 -
Directory Listing
Modified
Wed Aug 27 03:11:24 2008 UTC
(13 years, 9 months ago)
by
ksteube
Original Path:
trunk
Updated "assumed modules" in scons/cognac_options.py
Revision
1729 -
Directory Listing
Modified
Tue Aug 26 06:48:40 2008 UTC
(13 years, 9 months ago)
by
ksteube
Original Path:
trunk
Added prefix/lib go LD_LIBRARY_PATH
Revision
1728 -
Directory Listing
Modified
Tue Aug 26 05:15:32 2008 UTC
(13 years, 9 months ago)
by
ksteube
Original Path:
trunk
Minor update to configuration for cognac
Revision
1727 -
Directory Listing
Modified
Tue Aug 26 04:19:27 2008 UTC
(13 years, 9 months ago)
by
artak
Original Path:
trunk
numarray.dot in MAC has a bug, so if it is possible use numpy.dot instead in Point.isColoacted()
Revision
1725 -
Directory Listing
Modified
Tue Aug 26 03:31:49 2008 UTC
(13 years, 9 months ago)
by
ksteube
Original Path:
trunk
MPI read of .fly mesh file: fixed bug in message size while fanning out elements
Revision
1723 -
Directory Listing
Modified
Fri Aug 22 04:24:19 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
some unnecessary code removed.
Revision
1722 -
Directory Listing
Modified
Fri Aug 22 04:20:30 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
The CSR matrix patters handed ober to ParMetis may not containn the main diagonal entry.
This revisison is fixing the problem.
Revision
1720 -
Directory Listing
Modified
Fri Aug 22 00:24:35 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
PARAMETIS macro renamed to USE_PARAMETIS as set by scons
Revision
1719 -
Directory Listing
Modified
Thu Aug 21 06:24:29 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
robust function to normalize data object added
Revision
1718 -
Directory Listing
Modified
Thu Aug 21 05:50:11 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
method returning reference id added to FunctionSpace class
Revision
1717 -
Directory Listing
Modified
Thu Aug 21 05:24:35 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
function to calculate value closest to given value added
Revision
1716 -
Directory Listing
Modified
Thu Aug 21 05:03:49 2008 UTC
(13 years, 9 months ago)
by
gross
Original Path:
trunk
getListOfTags method added to FunctionSpace class
Revision
1713 -
Directory Listing
Modified
Wed Aug 20 07:03:45 2008 UTC
(13 years, 9 months ago)
by
ksteube
Original Path:
trunk
MPI read of mesh.fly: reduced memory requirements
Revision
1711 -
Directory Listing
Modified
Tue Aug 19 03:37:25 2008 UTC
(13 years, 9 months ago)
by
artak
Original Path:
trunk
minor
Revision
1709 -
Directory Listing
Modified
Fri Aug 15 01:09:45 2008 UTC
(13 years, 9 months ago)
by
lgraham
Original Path:
trunk
added separate section for Einstein notation
Revision
1708 -
Directory Listing
Modified
Thu Aug 14 22:42:24 2008 UTC
(13 years, 9 months ago)
by
ksteube
Original Path:
trunk
Added newline at end of file TFQMR.c because it is an error for icc.
Turned useumfpack off by default.
Revision
1707 -
Directory Listing
Modified
Thu Aug 14 06:38:14 2008 UTC
(13 years, 9 months ago)
by
ksteube
Original Path:
trunk
Fixed nightly tests for savanna (no longer running in PBS cause can't
compile on compute node).
Modified domain.print_mesh_info() to tell how many elements are owned by
a node and how many are in the overlap.
Instrumented the preconditioner step.
Revision
1706 -
Directory Listing
Modified
Thu Aug 14 06:09:50 2008 UTC
(13 years, 9 months ago)
by
artak
Original Path:
trunk
some problems with C90 compiler fixed
Revision
1705 -
Directory Listing
Modified
Thu Aug 14 05:56:40 2008 UTC
(13 years, 9 months ago)
by
ksteube
Original Path:
trunk
Branch scons-dev is hereby closed.
Some parts of scons scripts have been re-written.
Revision
1703 -
Directory Listing
Modified
Thu Aug 14 05:34:25 2008 UTC
(13 years, 9 months ago)
by
artak
Original Path:
trunk
TFQMR solver is added to PASO solver. It is not parallelised yet.
Revision
1702 -
Directory Listing
Modified
Thu Aug 14 04:10:23 2008 UTC
(13 years, 9 months ago)
by
lgraham
Original Path:
trunk
added in latex file for models chapter
Revision
1701 -
Directory Listing
Modified
Thu Aug 14 04:05:15 2008 UTC
(13 years, 9 months ago)
by
lgraham
Original Path:
trunk
comments for rev 1700.
Ran through spell checker for tutorial chapters.
Added in a tutorial chapter introducing the level set method with the Rayleigh-Taylor instability problem. Need to add python code at a later date for level set class.
Started to write up a chapter on model classes, e.g. StokesProblemCartesian, LevelSet, DurckerPrager, and TemperatureCartesian etc.
Revision
1695 -
Directory Listing
Modified
Fri Aug 8 04:28:28 2008 UTC
(13 years, 9 months ago)
by
artak
Original Path:
trunk
test_NoPDE_vector_variable is changed to avoid 0/0 division
Revision
1694 -
Directory Listing
Modified
Fri Aug 8 04:27:46 2008 UTC
(13 years, 9 months ago)
by
artak
Original Path:
trunk
test_NoPDE_vector_variable is changed to avoid 0/0 division
Revision
1693 -
Directory Listing
Modified
Fri Aug 8 04:22:58 2008 UTC
(13 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Modified toString() on Data objects.
str(x) or print x will now print a summary of the data rather than all
the points if the output would take more than 80 lines.
Revision
1692 -
Directory Listing
Modified
Thu Aug 7 23:05:37 2008 UTC
(13 years, 9 months ago)
by
artak
Original Path:
trunk
working configuration
Revision
1690 -
Directory Listing
Modified
Thu Aug 7 01:12:38 2008 UTC
(13 years, 9 months ago)
by
jfenwick
Original Path:
trunk
Added Configuration for shake63 (Joel-Box)
Revision
1679 -
Directory Listing
Modified
Wed Jul 30 00:09:12 2008 UTC
(13 years, 9 months ago)
by
artak
Original Path:
trunk
now convection works for other solvers as well, besides PCG.
Revision
1677 -
Directory Listing
Modified
Mon Jul 28 06:36:19 2008 UTC
(13 years, 10 months ago)
by
gross
Original Path:
trunk
bug in the MPI version of saveVTK fixed
Revision
1674 -
Directory Listing
Modified
Fri Jul 25 00:47:16 2008 UTC
(13 years, 10 months ago)
by
artak
Original Path:
trunk
Command line options (-e NE and -s solver ) are added
Revision
1673 -
Directory Listing
Modified
Thu Jul 24 22:28:50 2008 UTC
(13 years, 10 months ago)
by
gross
Original Path:
trunk
more algorithms for level set
Revision
1670 -
Directory Listing
Modified
Thu Jul 24 04:30:43 2008 UTC
(13 years, 10 months ago)
by
ksteube
Original Path:
trunk
Fix variable declaration to compile under MPI
Revision
1669 -
Directory Listing
Modified
Thu Jul 24 01:10:04 2008 UTC
(13 years, 10 months ago)
by
gross
Original Path:
trunk
A problem with VTK writer and MPI is fixed: Apparently MPI_file_open does not "delete" the file which has the effect that
if less date are written into the file as the file contained when opened bits of the previous containt remains in the file. This problem is fixed
by deleting the file if it exists before open it with MPI. The additional function Paso_existFile needed to be added as there is no standart C
function to test the exists of a file.
Revision
1666 -
Directory Listing
Modified
Wed Jul 23 04:44:30 2008 UTC
(13 years, 10 months ago)
by
ksteube
Original Path:
trunk
Removed unused software bruce
Revision
1665 -
Directory Listing
Modified
Wed Jul 23 03:23:03 2008 UTC
(13 years, 10 months ago)
by
gross
Original Path:
trunk
bug in the MPI version of saveVTK fixed
Revision
1664 -
Directory Listing
Modified
Tue Jul 22 03:41:38 2008 UTC
(13 years, 10 months ago)
by
ksteube
Original Path:
trunk
Install() on Mac OS was naming shared libs file.dylib...not OK for our
libraries for python calling C++ (escriptcpp.so and finleycpp.so).
This is because python's dlopen() calls only look for .so files.
Revision
1663 -
Directory Listing
Modified
Tue Jul 22 02:56:21 2008 UTC
(13 years, 10 months ago)
by
artak
Original Path:
trunk
-pedantic_errors commented for compiling in MAC OS X
Revision
1662 -
Directory Listing
Modified
Tue Jul 22 01:49:21 2008 UTC
(13 years, 10 months ago)
by
ksteube
Original Path:
trunk
Ran a simple Escript program on Mac OS Darwin. Still much to do.
Revision
1661 -
Directory Listing
Modified
Mon Jul 21 22:08:27 2008 UTC
(13 years, 10 months ago)
by
gross
Original Path:
trunk
some improvements on level set
Revision
1660 -
Directory Listing
Modified
Mon Jul 21 03:23:46 2008 UTC
(13 years, 10 months ago)
by
ksteube
Original Path:
trunk
Some variables were not declared as a result of recent cleanup
Revision
1659 -
Directory Listing
Modified
Fri Jul 18 02:28:13 2008 UTC
(13 years, 10 months ago)
by
gross
Original Path:
trunk
some first version of a robust level set
Revision
1651 -
Directory Listing
Modified
Tue Jul 15 09:33:48 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
Altix:
remove remaining warnings involving printf's and functions not returning values.
Only warnings left are in boost, and warnings that optimisation is turned off on big files.
Revision
1650 -
Directory Listing
Modified
Tue Jul 15 08:58:22 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
more care with m_t and diagS needed in the pragmas.
Revision
1649 -
Directory Listing
Modified
Tue Jul 15 08:41:02 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
Make operator=() on exception non-virtual. Should silence the Altix compiler.
However, if an exception is cast to another parent type, and
operator=() is called when the exception so cast is an l-value in the assignment,
an "incomplete" assignment will occur, copying only the parent class members of the
l-value in the assignmnet.
Revision
1648 -
Directory Listing
Modified
Tue Jul 15 08:01:03 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
Remove -c99 option on compiler, no longer needed.
Revision
1646 -
Directory Listing
Modified
Tue Jul 15 05:27:39 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
Unused vars due to the #if 0's in the code.
Revision
1645 -
Directory Listing
Modified
Tue Jul 15 05:26:38 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
unused vars.
Revision
1644 -
Directory Listing
Modified
Tue Jul 15 05:25:32 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
tmp_str was unused var on windows.
Revision
1643 -
Directory Listing
Modified
Tue Jul 15 05:24:14 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
Missing include file. A
ssume that a NULL F passed to Paso_FunctionCall() is an error.
Revision
1642 -
Directory Listing
Modified
Tue Jul 15 05:21:57 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
make the 1st arg of the ...._call(const double alpha,....
consistent between the .h and .c file. The const is not really needed.
Revision
1638 -
Directory Listing
Modified
Mon Jul 14 05:47:20 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
Fake checkin to see if my identity is correct now.
Revision
1637 -
Directory Listing
Modified
Mon Jul 14 05:34:59 2008 UTC
(13 years, 10 months ago)
by
ksteube
Original Path:
trunk
Resolved some compiler warnings
Changed blocktimer to not use strdup, intead malloc and strcpy
Revision
1636 -
Directory Listing
Modified
Mon Jul 14 03:40:22 2008 UTC
(13 years, 10 months ago)
by
trankine
Original Path:
trunk
somehow, this was not correctly merged from the branch??
Revision
1635 -
Directory Listing
Modified
Sat Jul 12 10:00:50 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
Last commit hung. Trying to recover. Also, remove excessive extern C {} I introduced
Revision
1634 -
Directory Listing
Modified
Sat Jul 12 09:08:33 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
linux_gcc_eg_options.py:
remove the std99 option, it is no longer needed as the code compiles without
C 1999 extension (need for these extensions elinminated in windows port).
Turn on all warnings except unknown pragmas. Should catch a lot of stuff.
SConstruct:
Impassioned plea
system_dep.h:
Add the standard incantation for dealing with const declarations
in C code called from C and C++
blocktimer:
Get the calling interface right for C code called from C and C++
and use __const as defined in system_dep.h
(Should be re-factored into compiler_dep.h file).
MeshAdapterFactory.cpp:
Since we have (effectively) no control over netCDF policy,
cast const char *'s to char *'s
Revision
1633 -
Directory Listing
Modified
Sat Jul 12 07:45:17 2008 UTC
(13 years, 10 months ago)
by
trankine
Original Path:
trunk
Turn on netcdf in windows build. No new errors generated.... remarkable.
The correctly configured netCDF source and windows build config.
that matches enthought python25/vtk/PmdPyRT for windows, can be
obtained from
https://cgsrv1.arrc.csiro.au/subversion/swframeutils/thirdParty/netcdf/trunk
username & password needed. If you have access to our twiki, no new username is required,
but authorisation to read the repository will be required.
Revision
1632 -
Directory Listing
Modified
Sat Jul 12 07:17:50 2008 UTC
(13 years, 10 months ago)
by
trankine
Original Path:
trunk
compiling with netcdf on revealed an unused var.
Revision
1631 -
Directory Listing
Modified
Sat Jul 12 07:16:39 2008 UTC
(13 years, 10 months ago)
by
trankine
Original Path:
trunk
eliminate unused var argument of catch statement.
Revision
1630 -
Directory Listing
Modified
Sat Jul 12 07:15:32 2008 UTC
(13 years, 10 months ago)
by
trankine
Original Path:
trunk
Merge resulted in double declaration.
Revision
1629 -
Directory Listing
Modified
Sat Jul 12 05:16:32 2008 UTC
(13 years, 10 months ago)
by
trankine
Original Path:
trunk
This is a fake checkin to notify that the trunk passes its tests on windows except for known problems in pycad.
Revision
1628 -
Directory Listing
Modified
Fri Jul 11 13:12:46 2008 UTC
(13 years, 10 months ago)
by
phornby
Original Path:
trunk
Merge in /branches/windows_from_1456_trunk_1620_merged_in branch.
You will find a preserved pre-merge trunk in tags under tags/trunk_at_1625.
That will be useful for diffing & checking on my stupidity.
Here is a list of the conflicts and their resolution at this
point in time.
=================================================================================
(LLWS == looks like white space).
finley/src/Assemble_addToSystemMatrix.c - resolve to branch - unused var. may be wrong.....
finley/src/CPPAdapter/SystemMatrixAdapter.cpp - resolve to branch - LLWS
finley/src/CPPAdapter/MeshAdapter.cpp - resolve to branch - LLWS
paso/src/PCG.c - resolve to branch - unused var fixes.
paso/src/SolverFCT.c - resolve to branch - LLWS
paso/src/FGMRES.c - resolve to branch - LLWS
paso/src/Common.h - resolve to trunk version. It's omp.h's include... not sure it's needed,
but for the sake of saftey.....
paso/src/Functions.c - resolve to branch version, indentation/tab removal and return error
on bad unimplemented Paso_FunctionCall.
paso/src/SolverFCT_solve.c - resolve to branch version, unused vars
paso/src/SparseMatrix_MatrixVector.c - resolve to branch version, unused vars.
escript/src/Utils.cpp - resloved to branch, needs WinSock2.h
escript/src/DataExpanded.cpp - resolved to branch version - LLWS
escript/src/DataFactory.cpp - resolve to branch version
=================================================================================
This currently passes tests on linux (debian), but is not checked on windows or Altix yet.
This checkin is to make a trunk I can check out for windows to do tests on it.
Known outstanding problem is in the operator=() method of exceptions
causing warning messages on the intel compilers.
May the God of doughnuts have mercy on my soul.
Revision
1625 -
Directory Listing
Modified
Thu Jul 10 23:55:31 2008 UTC
(13 years, 10 months ago)
by
gross
Original Path:
trunk
interpolate accepts now float and numarray as argument
Revision
1620 -
Directory Listing
Modified
Fri Jun 27 02:30:18 2008 UTC
(13 years, 11 months ago)
by
ksteube
Original Path:
trunk
Included more MPI configuration options on Savanna
Revision
1619 -
Directory Listing
Modified
Wed Jun 25 01:18:36 2008 UTC
(13 years, 11 months ago)
by
ksteube
Original Path:
trunk
Documentation nightly builds now working again
Revision
1618 -
Directory Listing
Modified
Tue Jun 24 01:16:40 2008 UTC
(13 years, 11 months ago)
by
ksteube
Original Path:
trunk
Trying to get documentation builds going again after reinstalling my desktop OS
Revision
1579 -
Directory Listing
Modified
Mon Jun 2 08:48:36 2008 UTC
(13 years, 11 months ago)
by
ksteube
Original Path:
trunk
Fix typo in PCG.c
Improvement of build options for Savanna, ac.apac.edu, shake71
Revision
1574 -
Directory Listing
Modified
Mon May 26 13:59:58 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
some modifications that may help to speed up compilation
Revision
1573 -
Directory Listing
Modified
Mon May 26 13:01:31 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
some modifications to run less tests
Revision
1572 -
Directory Listing
Modified
Mon May 26 12:50:56 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
some openmp problems in PCG fixed.
Revision
1571 -
Directory Listing
Modified
Sat May 24 22:28:33 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
fixes for OPenmp but PCG still does not work under openmp
Revision
1570 -
Directory Listing
Modified
Sat May 24 21:31:04 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
modifications to PCG to support dynamic scheduling
Revision
1569 -
Directory Listing
Modified
Sat May 24 04:51:38 2008 UTC
(14 years ago)
by
ksteube
Original Path:
trunk
Config for new installation at APAC with offscreen rendering
Revision
1568 -
Directory Listing
Modified
Sat May 24 03:15:08 2008 UTC
(14 years ago)
by
ksteube
Original Path:
trunk
Some testing on ac.apac.edu.au, more work needed
New pyvisi example offscreen.py for offscreen rendering
Revision
1567 -
Directory Listing
Modified
Thu May 22 22:52:41 2008 UTC
(14 years ago)
by
ksteube
Original Path:
trunk
scons all_tests passes on Savanna with OMP=1 and OMP=4.
New boost for Savanna.
A few more cases of #s -> %s.
Revision
1566 -
Directory Listing
Modified
Thu May 22 12:07:35 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
some changes to chunk test
Revision
1565 -
Directory Listing
Modified
Thu May 22 10:19:47 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
some small fixes for openmp
Revision
1564 -
Directory Listing
Modified
Thu May 22 09:31:33 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
some openmp dynamic scheduling for MVM.
Revision
1563 -
Directory Listing
Modified
Wed May 21 15:27:34 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
Some stuff added to make the FCT solver work with Dirichlet Boundary conditions for MPI.
and a memory leak in the coupler fixed.
Revision
1562 -
Directory Listing
Modified
Wed May 21 13:04:40 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
The algebraic upwinding with MPI. The case of boundary constraint needs still some attention.
Revision
1561 -
Directory Listing
Modified
Wed May 21 06:58:52 2008 UTC
(14 years ago)
by
ksteube
Original Path:
trunk
Added python method printParallelThreadCounts() to tell how many MPI CPUs and OpenMP threads we are using (for testing hybrid runs)
Revision
1560 -
Directory Listing
Modified
Wed May 21 05:55:30 2008 UTC
(14 years ago)
by
ksteube
Original Path:
trunk
Improvements to Savanna configuration
Revision
1559 -
Directory Listing
Modified
Wed May 21 04:27:15 2008 UTC
(14 years ago)
by
ksteube
Original Path:
trunk
Compiles and runs on Savanna (hostname service0)
Revision
1557 -
Directory Listing
Modified
Mon May 19 04:44:27 2008 UTC
(14 years ago)
by
artak
Original Path:
trunk
some changes to ArithmenticTuple class
Revision
1556 -
Directory Listing
Modified
Mon May 12 00:54:58 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
Modification to allow mixed mode execution.
In order to keep the code portable accross platform all MPI calls within
parallel regions have been moved.
Revision
1555 -
Directory Listing
Modified
Mon May 12 00:32:08 2008 UTC
(14 years ago)
by
ksteube
Original Path:
trunk
Adjusted vantage point
Revision
1553 -
Directory Listing
Modified
Thu May 8 09:38:07 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
some small bugs fixed to get MPI going with the modification. MPI version of BiCGStab added.
Revision
1552 -
Directory Listing
Modified
Thu May 8 08:52:41 2008 UTC
(14 years ago)
by
gross
Original Path:
trunk
some changes to make the implementatiopn of a upwind MPI version easier
Revision
1551 -
Directory Listing
Modified
Wed May 7 23:11:44 2008 UTC
(14 years ago)
by
artak
Original Path:
trunk
RILU canged to ILU0 to fix today's test failure
Revision
1550 -
Directory Listing
Modified
Wed May 7 02:22:57 2008 UTC
(14 years ago)
by
artak
Original Path:
trunk
coupled method is added, but it's still not working
Revision
1543 -
Directory Listing
Modified
Wed Apr 30 23:21:27 2008 UTC
(14 years ago)
by
ksteube
Original Path:
trunk
Create an MPEG movie from the state.N.vtu files of convection.py using pyvisi
Revision
1542 -
Directory Listing
Modified
Wed Apr 30 03:40:15 2008 UTC
(14 years ago)
by
artak
Original Path:
trunk
#s and #e replaced by %s and %e
Revision
1541 -
Directory Listing
Modified
Wed Apr 30 02:05:29 2008 UTC
(14 years ago)
by
ksteube
Original Path:
trunk
Changed #s to %s in print
Revision
1527 -
Directory Listing
Modified
Tue Apr 29 00:52:01 2008 UTC
(14 years, 1 month ago)
by
ksteube
Original Path:
trunk
Changed from printing doubles with %s to %e
Revision
1524 -
Directory Listing
Modified
Wed Apr 23 05:31:54 2008 UTC
(14 years, 1 month ago)
by
phornby
Original Path:
trunk
replace
abs -> fabs.
Shoot me an e-mail if this is the wrong thing.
Revision
1519 -
Directory Listing
Modified
Tue Apr 22 03:45:36 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
Initial version of NewtonGMRES solver. Still to do: 1. The atol and rtol define globally. 2. Decide about N
Revision
1518 -
Directory Listing
Modified
Fri Apr 18 05:47:52 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
Test are created for MINRES and TFQMR methods
Revision
1517 -
Directory Listing
Modified
Fri Apr 18 02:36:37 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
stopping criteriums are combined for GMRES,MINRES and TFQMR in stoppingcriterium2
Revision
1516 -
Directory Listing
Modified
Fri Apr 18 01:02:25 2008 UTC
(14 years, 1 month ago)
by
ksteube
Original Path:
trunk
Reduced L and changed Arenious from 22.0 to 0.0
Revision
1515 -
Directory Listing
Modified
Thu Apr 17 23:36:31 2008 UTC
(14 years, 1 month ago)
by
ksteube
Original Path:
trunk
Change to 3-D and change viscosity
Revision
1514 -
Directory Listing
Modified
Wed Apr 16 00:15:44 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
default input parameter iter_restart for GMRES is set to 20
Revision
1513 -
Directory Listing
Modified
Tue Apr 15 08:47:57 2008 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk
pragma ivdep removed. icc produced wrong code.
Revision
1512 -
Directory Listing
Modified
Tue Apr 15 00:54:25 2008 UTC
(14 years, 1 month ago)
by
ksteube
Original Path:
trunk
Some typos
Revision
1511 -
Directory Listing
Modified
Mon Apr 14 23:09:38 2008 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk
some fixes of compiler complains under windows
Revision
1494 -
Directory Listing
Modified
Mon Apr 14 06:53:28 2008 UTC
(14 years, 1 month ago)
by
phornby
Original Path:
trunk
Make this exactly the same as the run_linearPDEsOnFinley.py.trunk_version on the windows
port branch.
Makes merge easier later.
Revision
1489 -
Directory Listing
Modified
Mon Apr 14 04:29:30 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
Initial version of TFQMR method
Revision
1488 -
Directory Listing
Modified
Fri Apr 11 00:22:31 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
restart parameter is changed in GMRES(m)
Revision
1487 -
Directory Listing
Modified
Thu Apr 10 05:28:01 2008 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk
reordering when reading Netcfd files added.
Revision
1486 -
Directory Listing
Modified
Thu Apr 10 00:10:50 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
minor
Revision
1485 -
Directory Listing
Modified
Wed Apr 9 04:13:09 2008 UTC
(14 years, 1 month ago)
by
ksteube
Original Path:
trunk
Removed semicolons from #pragma omp
Revision
1484 -
Directory Listing
Modified
Wed Apr 9 03:25:53 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
minor: PCG set as default solver
Revision
1483 -
Directory Listing
Modified
Wed Apr 9 03:20:00 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
command line input parameters manipulation and execution time calculation are added
Revision
1482 -
Directory Listing
Modified
Wed Apr 9 02:29:47 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
inital x taken into account in MINRES algorithm
Revision
1481 -
Directory Listing
Modified
Wed Apr 9 00:45:47 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
initial version of MINRES algorithm
Revision
1480 -
Directory Listing
Modified
Tue Apr 8 02:02:48 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
Unil.h header is added
Revision
1479 -
Directory Listing
Modified
Tue Apr 8 02:02:25 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
Unil.h header is added
Revision
1478 -
Directory Listing
Modified
Tue Apr 8 01:53:33 2008 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk
some more header file fixing
Revision
1477 -
Directory Listing
Modified
Tue Apr 8 01:50:17 2008 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk
missing header file included
Revision
1476 -
Directory Listing
Modified
Mon Apr 7 23:38:50 2008 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk
Jacobian-free Newton method added to Paso
Revision
1475 -
Directory Listing
Modified
Mon Apr 7 05:13:21 2008 UTC
(14 years, 1 month ago)
by
artak
Original Path:
trunk
Initial version of GMRES with restart
Revision
1474 -
Directory Listing
Modified
Mon Apr 7 01:27:01 2008 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk
restart is supported now.
Revision
1473 -
Directory Listing
Modified
Fri Apr 4 07:49:18 2008 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk
initial checkin for level set
Revision
1472 -
Directory Listing
Modified
Thu Apr 3 09:07:07 2008 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk
some first steps towards restart added
Revision
1471 -
Directory Listing
Modified
Thu Apr 3 05:19:06 2008 UTC
(14 years, 1 month ago)
by
gross
Original Path:
trunk
test for GMRES solver for Stokes problem added