[escript] Log of /trunk-mpi-branch/escript

Revision 1140 - Directory Listing
Modified Tue May 15 03:23:17 2007 UTC (13 years, 9 months ago) by ksteube

MPI branch trunk-mpi-branch has been merged with trunk through revision
1125, so changes in trunk since 1125 are not reflected in
trunk-mpi-branch.

Originally we parallelized revision 989, but after this merge it's
as if we'd parallelized revision 1125.

run_simplesolve.py runs on 1, 2, 4 CPUs.

Revision 1126 - Directory Listing
Modified Fri May 4 03:15:59 2007 UTC (13 years, 10 months ago) by ksteube

Adjusted numNodes for MPI in Finley_Assemble_interpolate
Added MPI reduction to set up integrate()

Revision 1096 - Directory Listing
Modified Mon Apr 16 22:59:33 2007 UTC (13 years, 10 months ago) by ksteube

MPI implicit solver example run_simplesolve.py now compiling and
running successfully on one CPU of ess.

Adjusted SConscript, removed some debug print statements and removed
some partially implemented TRILINOS calls.

Revision 1087 - Directory Listing
Modified Thu Apr 12 10:01:47 2007 UTC (13 years, 10 months ago) by gross

the MPI version of PASO.PCG is running. 
There is a bug in the rectangular mesh generators but they need to be
revised in any case to clean up the code.

Revision 1016 - Directory Listing
Modified Thu Mar 8 06:31:28 2007 UTC (14 years ago) by gross

MPI version compiles and starts to run now. 
Important:

   * the mpi library needs to be shared.
   * the path needs to be added to LD_LIBRARY path.

The program stucks in the matrix assemblage.

Revision 989 - Directory Listing
Modified Wed Feb 21 00:26:26 2007 UTC (14 years ago) by ksteube

Branch for parallelization of implicit solutions.

This is a work in progress and should not yet be used by anyone.

The parallelization of explicit solutions was done by Ben and is
already incorporated into the main branch of trunk.

Revision 967 - Directory Listing
Modified Tue Feb 13 09:40:12 2007 UTC (14 years ago) by gross
Original Path: trunk/escript

dump and load of expanded data via netCDF added. some test are still missing.

Revision 966 - Directory Listing
Modified Tue Feb 13 05:45:18 2007 UTC (14 years ago) by gross
Original Path: trunk/escript

ops! escript/src/DataExpanded.cpp should not be in there

Revision 964 - Directory Listing
Modified Tue Feb 13 05:10:26 2007 UTC (14 years ago) by gross
Original Path: trunk/escript

The set/getRefVal functions of Data objects have been removed (mainly to avoid later problems with MPI).
Moreover, a faster access to the reference id of samples has been introduced. I don't think that anybody will
profit form this at this stage but it will allow a faster dump of data objects.

Revision 956 - Directory Listing
Modified Tue Feb 13 00:03:40 2007 UTC (14 years ago) by gross
Original Path: trunk/escript

Older versions of numarray dont have the "all" function. The test has been modified to run for these order versions. too.

Revision 954 - Directory Listing
Modified Fri Feb 9 08:56:14 2007 UTC (14 years ago) by gross
Original Path: trunk/escript

testing for completness if simulations improved.

Revision 952 - Directory Listing
Modified Wed Feb 7 23:53:24 2007 UTC (14 years, 1 month ago) by gross
Original Path: trunk/escript

testing of simulation completness improved.

Revision 950 - Directory Listing
Modified Tue Feb 6 07:01:11 2007 UTC (14 years, 1 month ago) by gross
Original Path: trunk/escript

escript data objects can now be saved to netCDF files, see http://www.unidata.ucar.edu/software/netcdf/.
Currently only constant data are implemented with expanded and tagged data to follow.
There are two new functions to dump a data object

   s=Data(...)
   s.dump(<filename>)

and to recover it

   s=load(<filename>, domain)

Notice that the function space of s is recovered but domain is still need. 

dump and load will replace archive and extract.

The installation needs now the netCDF installed.

Revision 938 - Directory Listing
Modified Thu Jan 25 03:40:54 2007 UTC (14 years, 1 month ago) by gross
Original Path: trunk/escript

the FinleyReade accepts now gmsh files (use format="gmsh")
and
Simulations are accepting Models only. Moreover, there is a test now
if a all Models targeted by a model in the simulation or a subsimulation
are included in  simulation or a subsimulation.

Revision 926 - Directory Listing
Modified Fri Jan 12 06:31:37 2007 UTC (14 years, 1 month ago) by gross
Original Path: trunk/escript

modelframe support dictonaries with fixed type of key and value. only writing implemented yet

Revision 924 - Directory Listing
Modified Wed Jan 10 03:39:27 2007 UTC (14 years, 1 month ago) by trankine
Original Path: trunk/escript

Win32 port modifications
"or" is not a valid modifier under win intel compiler

* Data.cpp - incorrect "or"s
* DataExpanded.cpp - incorrect "or"s

Revision 922 - Directory Listing
Modified Fri Jan 5 04:23:05 2007 UTC (14 years, 2 months ago) by gross
Original Path: trunk/escript

setValueOfDataPoint accepts double value as argument now

Revision 921 - Directory Listing
Modified Fri Jan 5 00:54:37 2007 UTC (14 years, 2 months ago) by gross
Original Path: trunk/escript

I have done some clarification on functions that allow to access individual data point values in a Data object. 
The term "data point number" is always local on a MPI process and referes to the value (data_point_in_sample, sample)
as a single identifyer (data_point_in_sample + sample * number_data_points_per_sample). a "global data point number"
referes to a tuple of a processour id and local data point number.

The function convertToNumArrayFromSampleNo has been removed now and convertToNumArrayFromDPNo renamed to getValueOfDataPoint.
There are two new functions:

   getNumberOfDataPoints
   setValueOfDataPoint

This allows you to do things like:

  in=Data(..)
  out=Data(..)
   for i in xrange(in.getNumberOfDataPoints())
       in_loc=in.getValueOfDataPoint(i)
       out_loc=< some operations on in_loc>
       out.setValueOfDataPoint(i,out_loc)


Also mindp  is renamed to  minGlobalDataPoint and there is a new function getValueOfGlobalDataPoint. While in MPI the functions getNumberOfDataPoints and getValueOfDataPoint are working locally on each process (so the code above is executed in parallel).
the latter allows getting a single value across all processors.

Revision 918 - Directory Listing
Modified Wed Jan 3 06:30:00 2007 UTC (14 years, 2 months ago) by gross
Original Path: trunk/escript

fixes on ESySXML to get runmodel going.

    * object ids are now local for read and write of XML
    * ParameterSets are now written with class name
    * ParameterSets linked by other ParameterSets (previously only Models) are written now 
    * list are now lists of str (rather than bools), lists with bool, int or float are mapped to numarray
    * numarray are writen with generic types Bool, Int, Float (portability!)

Revision 917 - Directory Listing
Modified Tue Jan 2 02:46:53 2007 UTC (14 years, 2 months ago) by gross
Original Path: trunk/escript

some EsysXML input files. rebuild still fails for these files

Revision 914 - Directory Listing
Modified Thu Dec 14 04:38:18 2006 UTC (14 years, 2 months ago) by gross
Original Path: trunk/escript

access to the number of samples added

Revision 912 - Directory Listing
Modified Wed Dec 6 03:29:49 2006 UTC (14 years, 3 months ago) by gross
Original Path: trunk/escript

modellib.WriteVTK has been rewritten. Instead of only three data objects scalar,
vector, tensor it takes now up to 20 data objects data0 ... data19 and writes it into a 
single VTK file. There is also the possibilty to define individiual name tags name0,..., name19.
If no name is given the corresponding attribute name of the Link target is used. 
This simplifies the usage and increases efficiency.

Revision 881 - Directory Listing
Modified Thu Oct 26 02:54:47 2006 UTC (14 years, 4 months ago) by gross
Original Path: trunk/escript

some small canges to clip function to allow unbounded upper or lower values

Revision 880 - Directory Listing
Modified Wed Oct 25 23:58:16 2006 UTC (14 years, 4 months ago) by gross
Original Path: trunk/escript

Locator accepts list of locations now

Revision 877 - Directory Listing
Modified Wed Oct 25 03:06:58 2006 UTC (14 years, 4 months ago) by gross
Original Path: trunk/escript

backtraking in the saddlepoint problem (not perfect yet)

Revision 876 - Directory Listing
Modified Thu Oct 19 03:50:23 2006 UTC (14 years, 4 months ago) by ksteube
Original Path: trunk/escript

Added erf (error function) implementation

Revision 875 - Directory Listing
Modified Tue Oct 17 12:42:47 2006 UTC (14 years, 4 months ago) by elspeth
Original Path: trunk/escript

DataSources added to modelframe/EsysXML, and tests to run_xml.py. Currently does not actually handle data 
sources, 
just references. Functionality is in progress. 

EsysXML format (URI can be a local file reference, or a remote reference such as an ftp site, fileformat 
is currently any string descriptor, such as finleyMesh or gmtdata):
 <Parameter type="DataSource">
                        <Name>
                                uritest
                        </Name>
                        <Value>
                                <DataSource>
                                        <URI>
                                                somelocalfile.txt
                                        </URI>
                                        <FileFormat>
                                                text
                                        </FileFormat>
                                </DataSource>
                        </Value>
                </Parameter>

Revision 874 - Directory Listing
Modified Tue Oct 17 12:06:11 2006 UTC (14 years, 4 months ago) by elspeth
Original Path: trunk/escript

Changed numarray xml structure slightly, to fit better with the rest of 
the XML. 
Added lists of booleans as a data type in modelframe.
Fixed bug with bools in modelframe.

Revision 873 - Directory Listing
Modified Mon Oct 16 04:07:33 2006 UTC (14 years, 4 months ago) by gross
Original Path: trunk/escript

uszawa scheme runs with variable viscosity

Revision 871 - Directory Listing
Modified Sat Oct 14 08:25:54 2006 UTC (14 years, 4 months ago) by elspeth
Original Path: trunk/escript

Numarray support added to modelframe and tests for numarray added to run_xml.
Numarrays will look like this in ESysXML:

A 2 x 3 numarray will look like this:

<Parameter type="NumArray">
                        <Name>
                                numtest
                        </Name>
                        <Value>
                                <ArrayType>
                                        Float64
                                </ArrayType>
                                <Shape>
                                        2 3
                                </Shape>
                                <Data>
                                        1.0 2.0 3.0 3.0 4.0 5.0
                                </Data>
                        </Value>
                </Parameter>

A numarray vector will look like this:

<Parameter type="NumArray">
                        <Name>
                                numtest
                        </Name>
                        <Value>
                                <ArrayType>
                                        Float64
                                </ArrayType>
                                <Shape>
                                        3
                                </Shape>
                                <Data>
                                        3.0 4.0 5.0
                                </Data>
                        </Value>
                </Parameter>

Revision 867 - Directory Listing
Modified Mon Oct 9 06:50:09 2006 UTC (14 years, 5 months ago) by gross
Original Path: trunk/escript

a class to solving sattle point problems using uszawa scheme (not functional yet)

Revision 865 - Directory Listing
Modified Fri Oct 6 10:02:18 2006 UTC (14 years, 5 months ago) by gross
Original Path: trunk/escript

some functions for minimizing a function added. there is still some work required but successfully applied in an aplication

Revision 856 - Directory Listing
Modified Tue Sep 26 01:00:36 2006 UTC (14 years, 5 months ago) by gross
Original Path: trunk/escript

data print shows now the element reference number

Revision 855 - Directory Listing
Modified Fri Sep 22 09:30:06 2006 UTC (14 years, 5 months ago) by gross
Original Path: trunk/escript

some tests for triangle meshes added

Revision 854 - Directory Listing
Modified Thu Sep 21 05:29:42 2006 UTC (14 years, 5 months ago) by gross
Original Path: trunk/escript

Some modifications to the binary operations +,-,*/, pow. 
The code is a bit simpler now and more efficient has there is
no reseising required now. the resizing method has been removed as
it is very, very inefficient. Even serial code should be faster now.
It is now forbidden to do an inplace update of scalar data object with an object 
of rank >0 as this is very slow (and does not make much sense).

Revision 838 - Directory Listing
Modified Tue Sep 5 22:45:55 2006 UTC (14 years, 6 months ago) by gross
Original Path: trunk/escript

drucker prager works now but there is still some work on the stepsize control needed.

Revision 836 - Directory Listing
Modified Mon Sep 4 22:37:25 2006 UTC (14 years, 6 months ago) by gross
Original Path: trunk/escript

new implementation of the tangential operator and a restriction of time step size change added

Revision 829 - Directory Listing
Modified Thu Aug 31 01:31:15 2006 UTC (14 years, 6 months ago) by gross
Original Path: trunk/escript

some changes on the drucker-prager (it does not work yet)

Revision 826 - Directory Listing
Modified Tue Aug 29 09:12:33 2006 UTC (14 years, 6 months ago) by gross
Original Path: trunk/escript

ken and I did not have a good afternoon. our checkin was very buggy. fixed

Revision 824 - Directory Listing
Modified Tue Aug 29 05:22:50 2006 UTC (14 years, 6 months ago) by ksteube
Original Path: trunk/escript

C_GeneralTensorProduct was modifying the function space of the
first arg.  Now creating a shallow copy and using the copy to
avoid this.

Revision 814 - Directory Listing
Modified Wed Aug 23 09:31:10 2006 UTC (14 years, 6 months ago) by gross
Original Path: trunk/escript

small bug in general tensor propduct fixed

Revision 813 - Directory Listing
Modified Mon Aug 21 02:08:47 2006 UTC (14 years, 6 months ago) by ksteube
Original Path: trunk/escript

Tensor products for Data objects are now computed by a C++ method
C_GeneralTensorProduct, which calls C function matrix_matrix_product
to do the actual calculation.

Can perform product with either input transposed in place, meaning
without first computing the transpose in a separate step.

Revision 804 - Directory Listing
Modified Thu Aug 10 01:12:16 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/escript

the new function swap_axes + tests added. (It replaces swap).

Revision 801 - Directory Listing
Modified Wed Aug 9 00:49:56 2006 UTC (14 years, 7 months ago) by ksteube
Original Path: trunk/escript

Removed outdated tests that use trace()

Revision 800 - Directory Listing
Modified Tue Aug 8 11:23:18 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/escript

new function _swap. Python wrapper + testing is still missing.

Revision 798 - Directory Listing
Modified Fri Aug 4 01:05:36 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/escript

Reimplementation of the assemblage with persistent jacobeans.
There are also a few changes to the tests which has now
dramatically reduced the memory demand.

Revision 797 - Directory Listing
Modified Thu Aug 3 02:03:18 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/escript

function added to manually free unused memory in the memory manager

Revision 791 - Directory Listing
Modified Thu Jul 27 00:37:57 2006 UTC (14 years, 7 months ago) by bcumming
Original Path: trunk/escript

updated calls to matrixmult to the new version matrix_mult

Revision 790 - Directory Listing
Modified Wed Jul 26 23:12:34 2006 UTC (14 years, 7 months ago) by bcumming
Original Path: trunk/escript

changes to escript/py_src/pdetools.py and /escript/src/Data.h/.cpp to
make the Locator work in MPI. escript::Data::mindp now returns a 3 tuple,
with the MPI rank of the process on which the minimum value occurs
included. escript::Data::convertToNumArrayFromDPNo also takes the ProcNo
to perform the MPI reduction.

This had to be implemented in both the MPI and non-MPI versions to allow
the necesary changes to the Python code in pdetools.py. In the non-MPI
version ProcNo is set to 0. This works for the explicit scripts tested
thus far, however if it causes problems in your scripts contact Ben or
Lutz, or revert the three files (pdetools.py, Data.h and Data.cpp) to
the previous version.

Revision 789 - Directory Listing
Modified Wed Jul 26 05:41:11 2006 UTC (14 years, 7 months ago) by dhawcroft
Original Path: trunk/escript

Inserted PASO_MPI macro in Data.h to match source file

Revision 785 - Directory Listing
Modified Tue Jul 25 03:48:10 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/escript

some new functions around tensor product added.

Revision 783 - Directory Listing
Modified Tue Jul 18 01:32:50 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/escript

coordinates, element size and normals returned by corresponding
FunctionSpace mesthods are now protected against updates. So 
+=, -=, *=, /=, setTaggedValue, fillFromNumArray will through an
excpetion.

The FunctionSpace class does nut buffer the oordinates, element size and
normals yet.

Revision 782 - Directory Listing
Modified Tue Jul 18 00:47:47 2006 UTC (14 years, 7 months ago) by bcumming
Original Path: trunk/escript

Large number of changes to Finley for meshing in MPI.

- optimisation and neatening up of rectcanglular mesh generation code
- first and second order 1D, 2D and 3D rectangular meshes are now
  available in finley and escript using MPI.
- reduced meshes now generated in MPI, and interpolation to and from 
  reduced data types now supported.

Revision 779 - Directory Listing
Modified Fri Jul 14 07:41:31 2006 UTC (14 years, 7 months ago) by woo409
Original Path: trunk/escript

+ Updated compilation options for Cognac to squeeze out a bit more performance
+ Now compiles using the Intel Math headers (mathimf.h) rather than plain math.h on both Win32 and Linux platforms when using the Intel compiler. Gives a small boost to performance on Altix and is essential on Windows

Revision 777 - Directory Listing
Modified Wed Jul 12 08:54:45 2006 UTC (14 years, 7 months ago) by gross
Original Path: trunk/escript

integration with persistent jacobeans is running now

Revision 775 - Directory Listing
Modified Mon Jul 10 04:00:08 2006 UTC (14 years, 8 months ago) by ksteube
Original Path: trunk/escript

Modified the following python methods in escript/py_src/util.py to
call faster C++ methods:
	escript_trace
	escript_transpose
	escript_symmetric
	escript_nonsymmetric

Revision 772 - Directory Listing
Modified Fri Jul 7 05:47:28 2006 UTC (14 years, 8 months ago) by gross
Original Path: trunk/escript

the check for inhomogenous constraint has been modified so ot does nor
require a tolerance which is a bit risky.

Revision 767 - Directory Listing
Modified Fri Jun 30 07:29:08 2006 UTC (14 years, 8 months ago) by gross
Original Path: trunk/escript

new FunctionSpace method setTags added

Revision 765 - Directory Listing
Modified Fri Jun 30 06:37:11 2006 UTC (14 years, 8 months ago) by gross
Original Path: trunk/escript

The test for the contact normal has been modified to take in cosideration the fact that the normal is unique up to the factor +/-1. 
Now the test checks the kllength of the normal for 1 and the angle to the reference normal.

Revision 758 - Directory Listing
Modified Mon Jun 26 13:52:42 2006 UTC (14 years, 8 months ago) by woo409
Original Path: trunk/escript

+ Added PASO_MPI conditional compilation guard to prevent inclusion of mpi.h when not using mpi.
Trunk now compiles and runs on both win32 and linux.

Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (14 years, 8 months ago) by woo409
Original Path: trunk/escript

+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)

Revision 751 - Directory Listing
Modified Mon Jun 26 01:46:34 2006 UTC (14 years, 8 months ago) by bcumming
Original Path: trunk/escript

Changes relating to the MPI version of escript
The standard OpenMP version of escript is unchanged

- updated data types (Finley_Mesh, Finley_NodeFile, etc) to store meshes
  over multiple MPI processes.
- added CommBuffer code in Paso for communication of Data associated
  with distributed meshes
- updates in Finley and Escript to support distributed data and operations
  on distributed data (such as interpolation).
- construction of RHS in MPI, so that simple explicit schemes (such as
  /docs/examples/wave.py without IO and the Locator) can run in MPI.
- updated mesh generation for first order line, rectangle and brick
  meshes and second order line meshes in MPI.        
- small changes to trunk/SConstruct and trunk/scons/ess_options.py to
  build the MPI version, these changes are turned off by default.

Revision 728 - Directory Listing
Modified Mon May 15 02:01:18 2006 UTC (14 years, 9 months ago) by gross
Original Path: trunk/escript

modelframe test examples work now

Revision 727 - Directory Listing
Modified Fri May 12 06:31:06 2006 UTC (14 years, 9 months ago) by gross
Original Path: trunk/escript

In case of an error in paso a seg fault occured. this was caused by
inproper deallocation of memory in this case. this problem is fixed now.

Revision 720 - Directory Listing
Modified Thu Apr 27 10:16:05 2006 UTC (14 years, 10 months ago) by gross
Original Path: trunk/escript

formatting errors in epydoc tags fixed

Revision 713 - Directory Listing
Modified Thu Apr 27 05:03:44 2006 UTC (14 years, 10 months ago) by gross
Original Path: trunk/escript

relative error tests have been introduced into a few more of the unit test.

Revision 711 - Directory Listing
Modified Wed Apr 26 22:39:51 2006 UTC (14 years, 10 months ago) by gross
Original Path: trunk/escript

tests pass now on gcc: some tests did not take round-off errors into consideration

Revision 710 - Directory Listing
Modified Wed Apr 26 22:22:16 2006 UTC (14 years, 10 months ago) by gross
Original Path: trunk/escript

"scons dodebug=no all_tests" runs now. 

Some of the tests could only pass under dodebug=yes as they checked for
exceptions from asserts. The tests are switched off now if DOASSERT is
not set.

Revision 709 - Directory Listing
Modified Wed Apr 26 06:35:36 2006 UTC (14 years, 10 months ago) by gross
Original Path: trunk/escript

fixes to get scons py_tests going: mainly fixes in the pathes

Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (14 years, 10 months ago) by gross
Original Path: trunk/escript

latex build documentation is working now

Revision 706 - Directory Listing
Modified Sat Apr 8 16:13:02 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/escript

python tests compile and run but there is still a problem with dependencies'

Revision 705 - Directory Listing
Modified Fri Apr 7 17:57:37 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/escript

python tests are allmost working

Revision 700 - Directory Listing
Modified Thu Apr 6 00:13:40 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/escript

A few changes in the build mechanism and the file structure so scons can build release tar files:

  * paso/src/Solver has been moved to paso/src 
  * all test_.py are now run_.py files and are assumed to be passing python tests. they can run by 
    scons py_tests and are part of the release test set
  * escript/py_src/test_ are moved to escript/test/python and are installed in to the build directory 
    (rather then the PYTHONPATH).
  * all py files in test/python which don't start with run_ or test_ are now 'local_py_tests'. they are installed i
    by not run automatically.
  * CppUnitTest is now treated as a escript module (against previous decisions).
  * scons realse builds nor tar/zip files with relvant source code (src and tests in seperate files)

the python tests don't pass yet due to path problems.

Revision 698 - Directory Listing
Modified Fri Mar 31 04:52:55 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/escript

test with tagged data pass now

Revision 693 - Directory Listing
Modified Thu Mar 30 08:34:08 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/escript

DataVariable removed. it is not used.

Revision 690 - Directory Listing
Modified Tue Mar 28 07:18:51 2006 UTC (14 years, 11 months ago) by robwdcock
Original Path: trunk/escript

+ Added basic_py_tests target which will run the basic set of python tests. The list of python tests was taken from autoscons

Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (14 years, 11 months ago) by robwdcock
Original Path: trunk/escript

+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3

Revision 637 - Directory Listing
Modified Thu Mar 23 10:55:31 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/escript

more copyright statements added

Revision 629 - Directory Listing
Modified Thu Mar 23 02:41:25 2006 UTC (14 years, 11 months ago) by elspeth
Original Path: trunk/escript

Copyright information added.

Revision 614 - Directory Listing
Modified Wed Mar 22 01:37:07 2006 UTC (14 years, 11 months ago) by elspeth
Original Path: trunk/escript

Corrected spelling of 'license' in url so that the link actually points to the license.

Revision 613 - Directory Listing
Modified Wed Mar 22 01:12:32 2006 UTC (14 years, 11 months ago) by elspeth
Original Path: trunk/escript

More copyright information inserted.

Revision 612 - Directory Listing
Modified Tue Mar 21 23:54:39 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/escript

strange problem with import numarray.linear_algebra fixed

Revision 609 - Directory Listing
Modified Tue Mar 21 09:46:39 2006 UTC (14 years, 11 months ago) by elspeth
Original Path: trunk/escript

Updated copyright and licence notices.

Revision 608 - Directory Listing
Modified Tue Mar 21 09:46:06 2006 UTC (14 years, 11 months ago) by elspeth
Original Path: trunk/escript

moved "import numarray.linear_algebra" to function that uses it, in case it is not installed

Revision 602 - Directory Listing
Modified Fri Mar 17 06:57:46 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/escript

more work on pyvisi integration

Revision 596 - Directory Listing
Modified Wed Mar 15 22:41:23 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/escript

some work on AdvectivePDE for the scalar case

Revision 595 - Directory Listing
Modified Tue Mar 14 23:52:45 2006 UTC (14 years, 11 months ago) by gross
Original Path: trunk/escript

test_utilOnFinley fixed (did run the tests that still fail)

Revision 588 - Directory Listing
Modified Fri Mar 10 04:45:04 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

1D and 3D tests for eigenvalues_and_eigenvector added.

Revision 587 - Directory Listing
Modified Fri Mar 10 02:26:50 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

eigenvalues_and_eigenvector fucntion added. test for 2D problem is added and is passed.

Revision 585 - Directory Listing
Modified Thu Mar 9 23:47:42 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

problem with eigenvalue of zero matrix fixed (thanks Dr Hale)

Revision 584 - Directory Listing
Modified Thu Mar 9 23:03:38 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

eigenvalues: compiles and passes tests on altix now

Revision 583 - Directory Listing
Modified Wed Mar 8 08:15:34 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

_eigenvalues_and_eigenvector method added of data object. the algorithm has been tested on floats in python but not on data objects.

Revision 580 - Directory Listing
Modified Wed Mar 8 05:45:51 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

faster version of the local eigenvalue calculation

Revision 576 - Directory Listing
Modified Fri Mar 3 08:28:42 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

some steps towards eigenvalue and eigenvector calculation

Revision 574 - Directory Listing
Modified Thu Mar 2 06:31:24 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

some modifications on eigenvalues to make it a bit more robust.

Revision 571 - Directory Listing
Modified Tue Feb 28 06:53:17 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

modify whereZero etc methods to also accept a tolerance parameter

Revision 570 - Directory Listing
Modified Tue Feb 28 06:51:25 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

extend these tests to test DataTagged objecrs also

Revision 564 - Directory Listing
Modified Thu Feb 23 05:22:31 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

extend testing to include DataTagged objects with no
tags, only default values

Revision 563 - Directory Listing
Modified Thu Feb 23 05:09:47 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

extend operator tests to include DataTagged and DataExpanded

Revision 562 - Directory Listing
Modified Thu Feb 23 05:03:16 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

further fix for DataTAgged::dp_algorithm, was not working for DataTagged objects with 0 tags

Revision 560 - Directory Listing
Modified Thu Feb 23 01:58:35 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

reinstate testing of DataTagged object unary ops

Revision 559 - Directory Listing
Modified Thu Feb 23 01:43:44 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

reimplement dp_algorithm for DataTagged, existing
implementation was complete rubbish
(ich bin so beschämt!)

Revision 557 - Directory Listing
Modified Wed Feb 22 05:11:56 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

add test case for case where binaryOp combines a DataTagged and a scalar

Revision 555 - Directory Listing
Modified Wed Feb 22 04:44:10 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

fixed binaryOp for combination of DataTagged and scalar values.
calculation of default value where RHS was a scalar was not yet
implemented

Revision 554 - Directory Listing
Modified Wed Feb 22 04:02:54 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

tests for tagged data fixed. test failing on maxval with segmenation fault (peinlich, peinlich)

Revision 549 - Directory Listing
Modified Wed Feb 22 00:45:48 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

extend testing of DataTagged setSlice to include case where
source and target have mismatched tag sets

Revision 548 - Directory Listing
Modified Tue Feb 21 23:52:41 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

modify tests for binary operations and setSlice to ensure situations where two DataTaggeds with mismatched tag sets are tested correctly

Revision 547 - Directory Listing
Modified Tue Feb 21 06:10:54 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

solution and reduced solution can have reference numbers now!

Revision 543 - Directory Listing
Modified Tue Feb 21 01:18:38 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

fix BinaryOp for DataTagged values - existing implementation was adding
tags from RHS to LHS using RHS's default value - should have been using
LHS's default value! fixed now

Revision 542 - Directory Listing
Modified Mon Feb 20 06:53:12 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

reinstate sliceSetting testing of DataTagged

Revision 541 - Directory Listing
Modified Mon Feb 20 06:50:39 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

ensure src and dest objects have matching tag sets in setSlice
by adding tags present in src but not in dest to dest using
dest's default value before doing actual slicing

Revision 540 - Directory Listing
Modified Mon Feb 20 06:05:32 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

reinstate sliceGetting testing for DataTagged objects

Revision 537 - Directory Listing
Modified Mon Feb 20 02:00:18 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

refine/extend tests for slicing, particularly those for DataTagged

Revision 536 - Directory Listing
Modified Fri Feb 17 03:20:53 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

symmetric and nonsymmetric part functions added

Revision 533 - Directory Listing
Modified Thu Feb 16 06:49:59 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

testing setSlice with rank1 and rank 3 values and multiple tags

Revision 531 - Directory Listing
Modified Wed Feb 15 08:11:10 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

a new version of lumping implemented (does not need a stiffness matrix)

Revision 529 - Directory Listing
Modified Wed Feb 15 03:58:50 2006 UTC (15 years ago) by gross
Original Path: trunk/escript

small bugs in eigenvalues function fixed. 3x3 on data still given wrong results

Revision 527 - Directory Listing
Modified Wed Feb 15 01:25:57 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

extend setSlice testing to include DataTagged with default values

Revision 519 - Directory Listing
Modified Tue Feb 14 05:30:50 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

fix comments for setSlice - were totally misleading!

Revision 518 - Directory Listing
Modified Tue Feb 14 05:18:09 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

add some basic testing for DataTagged::setSlice

Revision 516 - Directory Listing
Modified Tue Feb 14 01:53:58 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

comprehensive testing of DataTagged::getSlice completed

Revision 515 - Directory Listing
Modified Mon Feb 13 05:59:51 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

split slicing testing into getSlice and setSlice tests
add testing for DataTagged objects with one tagged value

Revision 511 - Directory Listing
Modified Fri Feb 10 05:39:18 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

extend basic testing of Data objects containing DataTagged objects

Revision 508 - Directory Listing
Modified Fri Feb 10 01:41:55 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

comprehensive testing of reshapeDataPoint method

Revision 506 - Directory Listing
Modified Thu Feb 9 06:06:02 2006 UTC (15 years ago) by jgs
Original Path: trunk/escript

extend testing for binary and unary operations
and add comprehensive testing for method getSampleDataByTag

Revision 504 - Directory Listing
Modified Wed Feb 8 05:51:27 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

initial testing of operations involving DataTagged objects

Revision 501 - Directory Listing
Modified Wed Feb 8 03:37:20 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

add extensive testing of addTaggedValue

Revision 499 - Directory Listing
Modified Tue Feb 7 04:40:44 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

add comprehensive testing for DataTagged with (1) default value only, (2) one tag value and (3) three tag values

Revision 497 - Directory Listing
Modified Tue Feb 7 01:28:01 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

extend testing of default DataTagged object

Revision 496 - Directory Listing
Modified Tue Feb 7 01:27:14 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

minor fix to DataTagged::getTagNumber
changes to comments and formatting
inline two methods

Revision 484 - Directory Listing
Modified Thu Feb 2 02:12:08 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

add remainder of includes to SConscript includes install

Revision 481 - Directory Listing
Modified Wed Feb 1 05:57:50 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

add mechanism to install .h files to inc directories
(still need to specify full lists of .h files to install)

Revision 480 - Directory Listing
Modified Wed Feb 1 05:15:12 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

rationalise #includes and forward declarations

Revision 474 - Directory Listing
Modified Mon Jan 30 04:23:44 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

restructure escript source tree
move src/Data/* -> src
remove inc
modify #includes and cpppath settings accordingly

Revision 468 - Directory Listing
Modified Wed Jan 25 06:50:39 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

reorganised esysUtils to remove inc directory

Revision 458 - Directory Listing
Modified Tue Jan 24 06:20:50 2006 UTC (15 years, 1 month ago) by gross
Original Path: trunk/escript

None options are excepted now. makes life a bit easier

Revision 457 - Directory Listing
Modified Tue Jan 24 06:13:03 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

fix installation to directories specified by pyinstall and libinstall

Revision 455 - Directory Listing
Modified Tue Jan 24 04:36:54 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

minor comment and formatting changes

Revision 450 - Directory Listing
Modified Mon Jan 23 05:04:45 2006 UTC (15 years, 1 month ago) by jgs
Original Path: trunk/escript

remove old make based build system

Revision 442 - Directory Listing
Modified Fri Jan 20 04:39:43 2006 UTC (15 years, 1 month ago) by gross
Original Path: trunk/escript

kronecker (and relatives) take now a FunctionSpace as argument and return a Data object in tthis functionspace

Revision 441 - Directory Listing
Modified Fri Jan 20 03:40:39 2006 UTC (15 years, 1 month ago) by gross
Original Path: trunk/escript

and finally test for the divergence operator added. div() has been modified to take Symbol arguments

Revision 440 - Directory Listing
Modified Fri Jan 20 02:15:48 2006 UTC (15 years, 1 month ago) by gross
Original Path: trunk/escript

tests for normals at boundary and contact region added

Revision 438 - Directory Listing
Modified Fri Jan 20 00:39:00 2006 UTC (15 years, 1 month ago) by gross
Original Path: trunk/escript

test for the grad fucntion added

Revision 437 - Directory Listing
Modified Fri Jan 20 00:16:58 2006 UTC (15 years, 1 month ago) by gross
Original Path: trunk/escript

comprehensive testing for integrate function added. tests for grad will be added in the next check in. GradTest is obsolete now.

Revision 436 - Directory Listing
Modified Thu Jan 19 22:36:36 2006 UTC (15 years, 1 month ago) by gross
Original Path: trunk/escript

bug fixed in integrate method. don;t use a[i,j]=.. to set a value in the numeric::array a but 
a[make_tuple(i,j)].

Revision 434 - Directory Listing
Modified Thu Jan 19 01:53:16 2006 UTC (15 years, 1 month ago) by gross
Original Path: trunk/escript

prints out the benchmark been started

Revision 433 - Directory Listing
Modified Tue Jan 17 23:54:38 2006 UTC (15 years, 1 month ago) by gross
Original Path: trunk/escript

new function inverse and tests added

Revision 430 - Directory Listing
Modified Wed Jan 11 06:40:50 2006 UTC (15 years, 1 month ago) by gross
Original Path: trunk/escript

ILU has been replicated is called RILU (recursive ILU) now. ILU will now be reimplemented.

Revision 429 - Directory Listing
Modified Wed Jan 11 05:53:40 2006 UTC (15 years, 1 month ago) by gross
Original Path: trunk/escript

new implementation and testing for trace function

Revision 425 - Directory Listing
Modified Tue Jan 10 04:10:39 2006 UTC (15 years, 1 month ago) by gross
Original Path: trunk/escript

The sparse solver can be called by paso now. 

the building has been change to reduce some code redundancy:
now all scons SCscripts are importing scons/esys_options.py which
imports platform specific settings.

Revision 413 - Directory Listing
Modified Tue Jan 3 08:27:19 2006 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

inner returns right functionspace now

Revision 400 - Directory Listing
Modified Wed Dec 21 23:13:39 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

Some chnages required for oder numarray versions. mai problem is that
operations on array objects with rank 0 sometimes return float rather
than arrays. This problem seems to be fixed in newer releases.

Revision 396 - Directory Listing
Modified Wed Dec 21 05:08:25 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

tests for clip, maximum, minimum added

Revision 395 - Directory Listing
Modified Wed Dec 21 02:41:59 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

test is splitted to reduce memory demand during compilation

Revision 393 - Directory Listing
Modified Tue Dec 20 05:40:43 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

set number of threads works now

Revision 391 - Directory Listing
Modified Tue Dec 20 05:36:50 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

intreface for setting the number of threads from python

Revision 390 - Directory Listing
Modified Tue Dec 20 03:39:24 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

os.loginname does not work under pbs. the exception is caught now

Revision 387 - Directory Listing
Modified Tue Dec 20 00:37:20 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

scale allows now to switch on and off certain problems

Revision 386 - Directory Listing
Modified Tue Dec 20 00:31:52 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

the number of problems to run is now the less or equal then len(scale) and less or equal number of problems. This allows easier control

Revision 375 - Directory Listing
Modified Fri Dec 16 01:44:11 2005 UTC (15 years, 2 months ago) by jgs
Original Path: trunk/escript

fix method names to match new scheme

Revision 374 - Directory Listing
Modified Fri Dec 16 01:35:07 2005 UTC (15 years, 2 months ago) by jgs
Original Path: trunk/escript

fix names of log/ln functions to match new scheme

Revision 373 - Directory Listing
Modified Fri Dec 16 01:31:06 2005 UTC (15 years, 2 months ago) by jgs
Original Path: trunk/escript

modified number of data points in mesh to allow
testing with Bruce Function objects

Revision 364 - Directory Listing
Modified Thu Dec 15 04:38:28 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

a simple environment to run benchmarks (mainly for testing solvers)

Revision 362 - Directory Listing
Modified Thu Dec 15 02:07:55 2005 UTC (15 years, 2 months ago) by jgs
Original Path: trunk/escript

removed unit-test runner scripts as unit-tests now run from scons

Revision 360 - Directory Listing
Modified Thu Dec 15 01:52:16 2005 UTC (15 years, 2 months ago) by jgs
Original Path: trunk/escript

add target to run all unit tests, the build will fail
for this target if any unit test fails

Revision 358 - Directory Listing
Modified Wed Dec 14 07:55:19 2005 UTC (15 years, 2 months ago) by cochrane
Original Path: trunk/escript

Updated link to epydoc generated documentation on the web site.

Revision 355 - Directory Listing
Modified Wed Dec 14 05:05:31 2005 UTC (15 years, 2 months ago) by jgs
Original Path: trunk/escript

add explicit target for building of unit tests

Revision 352 - Directory Listing
Modified Wed Dec 14 02:21:37 2005 UTC (15 years, 2 months ago) by jgs
Original Path: trunk/escript

turns out Install() targets should also be made Default()
targets if you want them to actually reliably work!

Revision 350 - Directory Listing
Modified Tue Dec 13 09:11:52 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

test for time integration manger added

Revision 348 - Directory Listing
Modified Tue Dec 13 07:33:10 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

advection diffusion class added

Revision 345 - Directory Listing
Modified Tue Dec 13 05:23:45 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

advection diffusion class added

Revision 341 - Directory Listing
Modified Mon Dec 12 05:26:10 2005 UTC (15 years, 2 months ago) by gross
Original Path: trunk/escript

some fixes to make the test to run for older numarray versions

Revision 340 - Directory Listing
Modified Mon Dec 12 05:10:45 2005 UTC (15 years, 2 months ago) by jgs
Original Path: trunk/escript

pass in pyinstall value from top-level scons script and add
correct suffix in module level scons scipr

Revision 329 - Directory Listing
Modified Wed Dec 7 04:42:43 2005 UTC (15 years, 3 months ago) by gross
Original Path: trunk/escript

fixing the problem that older versions of numarray don't have a sign method

Revision 328 - Directory Listing
Modified Wed Dec 7 04:41:53 2005 UTC (15 years, 3 months ago) by gross
Original Path: trunk/escript

start to remove slicing opertions

Revision 325 - Directory Listing
Modified Wed Dec 7 02:08:17 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

now determine hostname via socket.gethostname() as HOSTNAME
environment variable is apparently not set on all platforms

Revision 324 - Directory Listing
Modified Wed Dec 7 01:10:36 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

add symlinks to include files - previously added by hand as cvs couldn't
handle them

Revision 322 - Directory Listing
Modified Tue Dec 6 04:53:30 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

add modelframe.py to list of python modules to install

Revision 315 - Directory Listing
Modified Tue Dec 6 01:13:57 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

change method calls to match new names for Data methods

Revision 314 - Directory Listing
Modified Tue Dec 6 00:55:22 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

rename method calls to match new Data boost interface names

Revision 312 - Directory Listing
Modified Mon Dec 5 07:01:00 2005 UTC (15 years, 3 months ago) by gross
Original Path: trunk/escript

reimplementation of maxval,minval and length. small bug in generalTensorProduct fixed

Revision 311 - Directory Listing
Modified Mon Dec 5 02:59:54 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

remove references to ln and length methods which have been removed
from class Data

Revision 309 - Directory Listing
Modified Mon Dec 5 01:59:58 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

now load default options - by default!

Revision 292 - Directory Listing
Modified Fri Dec 2 03:11:04 2005 UTC (15 years, 3 months ago) by gross
Original Path: trunk/escript

complete test set for generalTensorProduct and friends added.

Revision 290 - Directory Listing
Modified Fri Dec 2 03:09:32 2005 UTC (15 years, 3 months ago) by gross
Original Path: trunk/escript

some minor bugs in util.py fixed.

Revision 288 - Directory Listing
Modified Fri Dec 2 01:55:04 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

now automatically build unit tests as required based on dependencies
between unit tests and libraries

Revision 286 - Directory Listing
Modified Thu Dec 1 06:40:20 2005 UTC (15 years, 3 months ago) by gross
Original Path: trunk/escript

length method is removed as it is too slow. use length in util.py instead

Revision 285 - Directory Listing
Modified Thu Dec 1 06:40:04 2005 UTC (15 years, 3 months ago) by gross
Original Path: trunk/escript

length method is removed as it is too slow. use length in util.py instead

Revision 282 - Directory Listing
Modified Wed Nov 30 09:18:38 2005 UTC (15 years, 3 months ago) by elspeth
Original Path: trunk/escript

Fixed XML duplication in output bug.

Revision 277 - Directory Listing
Modified Wed Nov 30 04:52:39 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

explicitly define dependencies between modules

Revision 269 - Directory Listing
Modified Wed Nov 30 01:59:55 2005 UTC (15 years, 3 months ago) by elspeth
Original Path: trunk/escript

Fixed typos and import problems

Revision 268 - Directory Listing
Modified Wed Nov 30 01:39:47 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

setup scons configuration to make and install python code

Revision 265 - Directory Listing
Modified Tue Nov 29 22:56:08 2005 UTC (15 years, 3 months ago) by elspeth
Original Path: trunk/escript

Minor bugfix - should now actually run simulations

Revision 252 - Directory Listing
Modified Tue Nov 29 05:58:03 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

pass in platform specific libraries via options files now

Revision 248 - Directory Listing
Modified Tue Nov 29 04:58:23 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

add top level scons config files to allow building
of all unit tests for each module at once

Revision 246 - Directory Listing
Modified Tue Nov 29 04:27:00 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

allow compile options to be loaded from a config
file specified on the command line to scons

Revision 244 - Directory Listing
Modified Tue Nov 29 00:27:10 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

fixed an accidental commit which broke this script

Revision 241 - Directory Listing
Modified Mon Nov 28 06:14:47 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

if usegcc=1 is set on command line, load compiler options
fropm scons/gcc_options.py

Revision 239 - Directory Listing
Modified Mon Nov 28 05:49:32 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

read names of python and boost libraries from config file now

Revision 235 - Directory Listing
Modified Mon Nov 28 04:36:16 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

change scons config files for escript unit tests to read
compiler options from option file now

Revision 224 - Directory Listing
Modified Fri Nov 25 00:33:27 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

implement switching of debug compiler options based on command line flag 'debug'

Revision 223 - Directory Listing
Modified Thu Nov 24 23:12:13 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

pass in cc/cxx settings from config file

Revision 216 - Directory Listing
Modified Thu Nov 24 06:35:14 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

first pass at importing compile options from an external file'

Revision 214 - Directory Listing
Modified Thu Nov 24 05:15:26 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

collect all information needed to determine build
configuration (ie: debug/nodebug, host, platform etc)

Revision 196 - Directory Listing
Modified Tue Nov 22 01:48:33 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

first draft scons construct files for remaining escript unit tests

Revision 192 - Directory Listing
Modified Mon Nov 21 04:52:14 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

pass in top level install directory for finley/escript/bruce/paso
libraries when building via top level scons script

Revision 191 - Directory Listing
Modified Mon Nov 21 04:10:12 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

push platform dependent compiler flags and include directories up to library level scons files - these will eventually be brought in from external config files

Revision 190 - Directory Listing
Modified Mon Nov 21 03:27:42 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

pass in value for esysroot and use this to determine include file locations

Revision 188 - Directory Listing
Modified Mon Nov 21 01:20:26 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

explicitly add -fpic option to all compiler options lists
to ensure relocatable code is generated

Revision 184 - Directory Listing
Modified Fri Nov 18 06:14:18 2005 UTC (15 years, 3 months ago) by phornby
Original Path: trunk/escript

Remove unnecessary unary +'s from the numarray.array's because this is broken in some
versions of numarray.

Revision 181 - Directory Listing
Modified Fri Nov 18 04:28:47 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

first draft of config/construct scripts for escript library

Revision 160 - Directory Listing
Modified Thu Nov 10 05:09:25 2005 UTC (15 years, 3 months ago) by jgs
Original Path: trunk/escript

fixed a broken constructor - simply didn't work

Revision 159 - Directory Listing
Modified Thu Nov 10 04:01:43 2005 UTC (15 years, 3 months ago) by matt
Original Path: trunk/escript

Added a more comprehensive data equivalence test based on X coordinates.

Revision 158 - Directory Listing
Modified Thu Nov 10 03:51:03 2005 UTC (15 years, 3 months ago) by matt
Original Path: trunk/escript

Added finley and bruce rectangle and brick Data archive tests.

Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (15 years, 4 months ago) by jgs
Original Path: trunk/escript
Copied from: trunk/esys2/escript revision 154

move all directories from trunk/esys2 into trunk and remove esys2

Revision 154 - Directory Listing
Modified Mon Nov 7 05:51:17 2005 UTC (15 years, 4 months ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch dev-02 back to main trunk on 2005-11-07

Revision 153 - Directory Listing
Modified Tue Oct 25 01:51:20 2005 UTC (15 years, 4 months ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch dev-02 back to main trunk on 2005-10-25

Revision 152 - Directory Listing
Modified Fri Oct 21 08:32:21 2005 UTC (15 years, 4 months ago) by phornby
Original Path: trunk/esys2/escript

DataConstantTestCase.cpp, DataExpandedTestCase.cpp:

Replace

DataExpanded testData1(FunctionSpace(),....)

with

FunctionSpace tmp_fns;
DataExpanded testData1(tmp_fns,shape,data);

for GCC's sake.




Added some profiling to PoissonSolverTest.py.

Revision 151 - Directory Listing
Modified Thu Sep 22 01:55:00 2005 UTC (15 years, 5 months ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch dev-02 back to main trunk on 2005-09-22

Revision 150 - Directory Listing
Modified Thu Sep 15 03:44:45 2005 UTC (15 years, 5 months ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch dev-02 back to main trunk on 2005-09-15

Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (15 years, 6 months ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch dev-02 back to main trunk on 2005-09-01

Revision 148 - Directory Listing
Modified Tue Aug 23 01:24:31 2005 UTC (15 years, 6 months ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch dev-02 back to main trunk on 2005-08-23

Revision 147 - Directory Listing
Modified Fri Aug 12 01:45:47 2005 UTC (15 years, 6 months ago) by jgs
Original Path: trunk/esys2/escript

erge of development branch dev-02 back to main trunk on 2005-08-12

Revision 146 - Directory Listing
Modified Fri Jul 29 01:44:29 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript

First merge of development branch dev-02 back to main trunk on 2005-07-29

Revision 143 - Directory Listing
Modified Mon Jul 25 05:39:50 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript

moved these files to modellib directory

Revision 142 - Directory Listing
Modified Mon Jul 25 05:28:20 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch back to main trunk on 2005-07-25

Revision 141 - Directory Listing
Modified Mon Jul 25 05:15:41 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript

fixed to work with new python source/install directory structure

Revision 137 - Directory Listing
Modified Fri Jul 22 07:07:20 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript

removed all references to modellib module

Revision 133 - Directory Listing
Modified Fri Jul 22 06:26:05 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript

removing escript/lib/py_src/modellib

Revision 129 - Directory Listing
Modified Fri Jul 22 05:17:51 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript

removed references to modellib

Revision 128 - Directory Listing
Modified Fri Jul 22 05:13:08 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript

removed modellib code from escript source directory

Revision 126 - Directory Listing
Modified Fri Jul 22 03:53:08 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch back to main trunk on 2005-07-22

Revision 124 - Directory Listing
Modified Wed Jul 20 06:14:58 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/escript

added ln(data) style wrapper for data.ln() - also added corresponding
implementation of Ln_Symbol class (not sure if this is right though)

Revision 123 - Directory Listing
Modified Fri Jul 8 04:08:13 2005 UTC (15 years, 8 months ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch back to main trunk on 2005-07-08

Revision 122 - Directory Listing
Modified Thu Jun 9 05:38:05 2005 UTC (15 years, 9 months ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch back to main trunk on 2005-06-09

Revision 121 - Directory Listing
Modified Fri May 6 04:26:16 2005 UTC (15 years, 10 months ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch back to main trunk on 2005-05-06

Revision 118 - Directory Listing
Modified Tue Apr 12 04:44:55 2005 UTC (15 years, 10 months ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch back to main trunk on 2005-04-12

Revision 114 - Directory Listing
Modified Fri Mar 4 07:12:37 2005 UTC (16 years ago) by jgs
Original Path: trunk/esys2/escript

Merge of development branch back to main trunk on 2005-03-04

Revision 105 - Directory Listing
Modified Thu Dec 23 07:20:07 2004 UTC (16 years, 2 months ago) by jgs
Original Path: trunk/esys2/escript

commit of dev-01 branch back to main trunk on 2004-12-23

Revision 95 - Directory Listing
Modified Wed Oct 27 00:53:16 2004 UTC (16 years, 4 months ago) by jgs
Original Path: trunk/esys2/escript

disabled testSubtraction test for now - requires setTaggedValue interface
which takes Data object as argument

Revision 93 - Directory Listing
Modified Wed Oct 27 00:42:03 2004 UTC (16 years, 4 months ago) by jgs
Original Path: trunk/esys2/escript

trying to fix cvs permissions wierdness

Revision 90 - Directory Listing
Modified Wed Oct 27 00:31:36 2004 UTC (16 years, 4 months ago) by jgs
Original Path: trunk/esys2/escript

removed non-boost version of setTaggedValue - breaks escript.cpp

Revision 83 - Directory Listing
Modified Tue Oct 26 23:51:50 2004 UTC (16 years, 4 months ago) by jgs
Original Path: trunk/esys2/escript

added dummy file to ensure CVS keeps this directory in the repository

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