Log of /trunk

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Revision 2283 - Directory Listing
Modified Fri Feb 20 01:08:21 2009 UTC (14 years, 1 month ago) by jfenwick

doxygen doco now correctly reports global project revsion number.
link to epydoc is now via a relative URL (avoids the problem of nightly doxygen pointing at out of date release epydoc).

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Revision 2282 - Directory Listing
Modified Thu Feb 19 06:30:19 2009 UTC (14 years, 1 month ago) by jfenwick

setTaggedValueByName now throws if the tag name does not exist.
The documentation says this is what happens - now the code matches the doco.
This resolves issue 238

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Revision 2281 - Directory Listing
Modified Thu Feb 19 05:36:38 2009 UTC (14 years, 1 month ago) by artak

minor comments are added

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Revision 2280 - Directory Listing
Modified Thu Feb 19 03:34:35 2009 UTC (14 years, 1 month ago) by artak

Some statistics changed in solver.c. In AMG stopping criteria now depend on levels specified. In loadMM conditions on pivot and lval reformulated to avoid numerical overflow.

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Revision 2279 - Directory Listing
Modified Tue Feb 17 10:51:12 2009 UTC (14 years, 1 month ago) by gross

mofification of the weighting factor

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Revision 2278 - Directory Listing
Modified Tue Feb 17 07:39:16 2009 UTC (14 years, 1 month ago) by gross

for some reason my gcc version requires NL at the end of the source files.

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Revision 2277 - Directory Listing
Modified Tue Feb 17 07:38:07 2009 UTC (14 years, 1 month ago) by gross

type fixed

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Revision 2276 - Directory Listing
Modified Tue Feb 17 06:21:31 2009 UTC (14 years, 1 month ago) by jfenwick

utest.sh now builds correctly for Macintosh.
It turns out if you really want to differentiate between Mac and Linux, 
you should use platform not os.

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Revision 2275 - Directory Listing
Modified Tue Feb 17 04:25:08 2009 UTC (14 years, 1 month ago) by artak

Extra tests are added for checking the quality of the solution from Jacobi and AMG.

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Revision 2274 - Directory Listing
Modified Tue Feb 17 04:20:29 2009 UTC (14 years, 1 month ago) by artak

Bug fixed with type overflowing, namely in q_sort pivot and rval variables now unsigned long instead of int. Extra check is added to avoid this in the future.

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Revision 2273 - Directory Listing
Modified Tue Feb 17 01:22:48 2009 UTC (14 years, 1 month ago) by jfenwick

Added compile flags to turn autolazy on and off.
These are for testing purposes only.

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Revision 2272 - Directory Listing
Modified Mon Feb 16 23:40:03 2009 UTC (14 years, 1 month ago) by jfenwick

Stop icpc on savanna warning about ignoring namespaces.

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Revision 2271 - Directory Listing
Modified Mon Feb 16 05:08:29 2009 UTC (14 years, 1 month ago) by jfenwick

Merging version 2269 to trunk

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Revision 2269 - Directory Listing
Modified Fri Feb 13 03:55:28 2009 UTC (14 years, 1 month ago) by jfenwick

Updating prepare.py

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Revision 2268 - Directory Listing
Modified Fri Feb 13 01:23:42 2009 UTC (14 years, 1 month ago) by jfenwick

Tweaking environment

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Revision 2267 - Directory Listing
Modified Thu Feb 12 06:18:45 2009 UTC (14 years, 1 month ago) by gross

weighting factor introduced.

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Revision 2265 - Directory Listing
Modified Wed Feb 11 07:46:07 2009 UTC (14 years, 1 month ago) by gross

somehow the fix of the test did not make it into the repository.

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Revision 2264 - Directory Listing
Modified Wed Feb 11 06:48:28 2009 UTC (14 years, 1 month ago) by gross

a new darcy flux solver.

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Revision 2263 - Directory Listing
Modified Wed Feb 11 03:56:47 2009 UTC (14 years, 1 month ago) by gross

test for gmsh command line generation fixed (didn't know that there is such a test)

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Revision 2262 - Directory Listing
Modified Wed Feb 11 01:58:06 2009 UTC (14 years, 1 month ago) by jfenwick

Create missing directory in script.

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Revision 2261 - Directory Listing
Modified Tue Feb 10 08:38:53 2009 UTC (14 years, 1 month ago) by gross

GMRES supports prconditioning from the right now.

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Revision 2260 - Directory Listing
Modified Tue Feb 10 04:50:10 2009 UTC (14 years, 1 month ago) by jfenwick

That should be the last of the copyWithMask related errors.

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Revision 2259 - Directory Listing
Modified Tue Feb 10 01:49:44 2009 UTC (14 years, 1 month ago) by jfenwick

Fixes errors due to feeding scalars and vectors into the same call to maximum.

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Revision 2258 - Directory Listing
Modified Tue Feb 10 00:27:44 2009 UTC (14 years, 1 month ago) by jfenwick

Making directories required for pyvisi tests

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Revision 2257 - Directory Listing
Modified Mon Feb 9 07:06:00 2009 UTC (14 years, 1 month ago) by gross

test can now deal with contact elements

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Revision 2256 - Directory Listing
Modified Mon Feb 9 06:20:32 2009 UTC (14 years, 1 month ago) by jfenwick

Throw an exception if AbstractDomain::MPIBarrier is called (This shouldn't happen).
Added Barrier to saveVTK.
Replaced some misused keywords.

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Revision 2255 - Directory Listing
Modified Mon Feb 9 06:10:13 2009 UTC (14 years, 1 month ago) by gross

problem in maximum fixed.

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Revision 2254 - Directory Listing
Modified Sun Feb 8 23:40:22 2009 UTC (14 years, 1 month ago) by jfenwick

All these commits are because I am working with something which processes a clean checkout.

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Revision 2253 - Directory Listing
Modified Sun Feb 8 23:35:28 2009 UTC (14 years, 1 month ago) by jfenwick

Fixing incorrect user info

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Revision 2252 - Directory Listing
Modified Fri Feb 6 07:51:28 2009 UTC (14 years, 1 month ago) by gross

some notes for the kelvin model added. Implementation is still missing

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Revision 2251 - Directory Listing
Modified Fri Feb 6 06:50:39 2009 UTC (14 years, 1 month ago) by gross

new compressible flow solver

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Revision 2250 - Directory Listing
Modified Fri Feb 6 06:25:21 2009 UTC (14 years, 1 month ago) by jfenwick

Looking good.

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Revision 2249 - Directory Listing
Modified Fri Feb 6 00:11:51 2009 UTC (14 years, 1 month ago) by jfenwick

Fixed some pathing issues.

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Revision 2248 - Directory Listing
Modified Thu Feb 5 23:24:04 2009 UTC (14 years, 1 month ago) by gross

small fixes to gmsh command generation

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Revision 2247 - Directory Listing
Modified Thu Feb 5 07:39:20 2009 UTC (14 years, 1 month ago) by gross

output control fixed.

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Revision 2246 - Directory Listing
Modified Thu Feb 5 06:04:55 2009 UTC (14 years, 1 month ago) by jfenwick

Made some changes to the way copyWithMask works.

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Revision 2245 - Directory Listing
Modified Wed Feb 4 06:27:59 2009 UTC (14 years, 1 month ago) by gross

renaming to make _GMRESm visibale

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Revision 2244 - Directory Listing
Modified Wed Feb 4 06:27:34 2009 UTC (14 years, 1 month ago) by gross

fix for openmp

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Revision 2243 - Directory Listing
Modified Wed Feb 4 05:22:28 2009 UTC (14 years, 1 month ago) by gross

small bug fixed which could lead to a seg fault

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Revision 2242 - Directory Listing
Modified Wed Feb 4 05:04:20 2009 UTC (14 years, 1 month ago) by jfenwick

Development continues on unit test framework

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Revision 2241 - Directory Listing
Modified Wed Feb 4 03:34:57 2009 UTC (14 years, 1 month ago) by artak

correct openmp options for MAC

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Revision 2240 - Directory Listing
Modified Wed Feb 4 01:17:06 2009 UTC (14 years, 1 month ago) by artak

Some statistical print outs are added in solver and loadMM to Paso_SparseMatrix method is added

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Revision 2239 - Directory Listing
Modified Wed Feb 4 00:42:46 2009 UTC (14 years, 1 month ago) by jfenwick

Added pyvisi and c++ unit tests to build of utest.sh

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Revision 2238 - Directory Listing
Modified Tue Feb 3 06:17:34 2009 UTC (14 years, 1 month ago) by gross

gmsh does not support curveture based meshing optin anymore

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Revision 2237 - Directory Listing
Modified Tue Feb 3 06:14:19 2009 UTC (14 years, 1 month ago) by gross

better method to du clipping

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Revision 2236 - Directory Listing
Modified Tue Feb 3 06:13:50 2009 UTC (14 years, 1 month ago) by gross

switch to relative tolerance in face detection

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Revision 2235 - Directory Listing
Modified Tue Feb 3 01:47:47 2009 UTC (14 years, 1 month ago) by jfenwick

Added support for generating non-scons test scripts

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Revision 2234 - Directory Listing
Modified Mon Feb 2 05:30:30 2009 UTC (14 years, 1 month ago) by artak

two new tests for Mountains class are added.

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Revision 2232 - Directory Listing
Modified Fri Jan 30 05:24:02 2009 UTC (14 years, 1 month ago) by jfenwick

Ooops need this one too.

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Revision 2231 - Directory Listing
Modified Fri Jan 30 05:16:05 2009 UTC (14 years, 1 month ago) by jfenwick

Modified scons files to compile c++ unit tests with the same options used to compile the libraries.

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Revision 2211 - Directory Listing
Modified Tue Jan 13 03:52:13 2009 UTC (14 years, 2 months ago) by artak

Example of a usage of Mountains class.

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Revision 2210 - Directory Listing
Modified Tue Jan 13 03:49:47 2009 UTC (14 years, 2 months ago) by artak

First version of the mountains class.

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Revision 2208 - Directory Listing
Modified Mon Jan 12 06:37:07 2009 UTC (14 years, 2 months ago) by gross

more work on the dary solver 

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Revision 2206 - Directory Listing
Modified Fri Jan 9 03:50:29 2009 UTC (14 years, 2 months ago) by caltinay

Added some more doxygen docu to escriptreader classes.

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Revision 2204 - Directory Listing
Modified Fri Jan 9 01:33:39 2009 UTC (14 years, 2 months ago) by caltinay

Fixed a little doxygen typo in the hyperlink.

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Revision 2201 - Directory Listing
Modified Fri Jan 9 00:45:44 2009 UTC (14 years, 2 months ago) by caltinay

Avoid NULL reference.

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Revision 2200 - Directory Listing
Modified Thu Jan 8 23:55:40 2009 UTC (14 years, 2 months ago) by jfenwick

Fixed python string substitution in error messages for trace and transpose.
Added tests for invalid axis offsets for trace on the c++ side.

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Revision 2199 - Directory Listing
Modified Thu Jan 8 06:10:52 2009 UTC (14 years, 2 months ago) by jfenwick

Misc fixes:
Added some svn:ignore properties for output files that were cluttering things up.

Lazy fixes:
Fixed shape calculations for TRACE and TRANSPOSE for rank>2.
Adjusted unit test accordingly.

As a Temporary change to DataC.cpp to test for lazy data in DataC's expanded check.
This is wrong but would only affect people using lazy data.
The proper fix will come when the numarray removal code moves over from the branch.

Made tensor product AUTOLAZY capable.
Fixed some bugs resolving tensor products (incorrect offsets in buffers).
Macro'd some stray couts.

- It appears that AUTOLAZY now passes all unit tests.
- It will not be _really_ safe for general use until I can add COW. 
- (Everything's better with COW)

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Revision 2198 - Directory Listing
Modified Thu Jan 8 05:59:21 2009 UTC (14 years, 2 months ago) by gross

bug with OPENMP fixed.

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Revision 2197 - Directory Listing
Modified Thu Jan 8 05:49:16 2009 UTC (14 years, 2 months ago) by gross

modifications to the way cosntraints are handeled in the Transport problem

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Revision 2196 - Directory Listing
Modified Wed Jan 7 06:14:59 2009 UTC (14 years, 2 months ago) by caltinay

As harsh as it sounds: removed obsolete friendship between DataVar and Mesh.
Updated and added documentation to some more methods.

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Revision 2195 - Directory Listing
Modified Wed Jan 7 04:13:52 2009 UTC (14 years, 2 months ago) by jfenwick

Fixed a bug in lazy evaluation of Tensor Products.
Added / to end of boost path

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Revision 2194 - Directory Listing
Modified Tue Jan 6 01:23:37 2009 UTC (14 years, 2 months ago) by caltinay

escript2silo: Allow different meshes for different timesteps.
escriptreader: Fixed segfaults for some error conditions.

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Revision 2193 - Directory Listing
Modified Mon Jan 5 04:29:06 2009 UTC (14 years, 2 months ago) by lgraham

Edited Stokes flow and Level Set tutorials (grammar etc.)

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Revision 2192 - Directory Listing
Modified Mon Jan 5 02:41:34 2009 UTC (14 years, 2 months ago) by lgraham

Edited Stokes flow tutorial

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Revision 2191 - Directory Listing
Modified Mon Jan 5 00:30:15 2009 UTC (14 years, 2 months ago) by lgraham

Included a tutorial on fluid flow, using the StokesProblemCartesian class

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Revision 2190 - Directory Listing
Modified Wed Dec 24 02:04:16 2008 UTC (14 years, 2 months ago) by caltinay

escriptreader: write special mesh variables into a "subdirectory" in the Silo
file. That way, "real" variables are better visible.

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Revision 2189 - Directory Listing
Modified Tue Dec 23 04:24:37 2008 UTC (14 years, 2 months ago) by caltinay

Changed generate_dumps script to use saveESD().

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Revision 2188 - Directory Listing
Modified Tue Dec 23 04:24:03 2008 UTC (14 years, 2 months ago) by caltinay

Implemented new utility function saveESD() which takes care of dumping the
given data objects with their domain and creates an ESD file containing the
required information. This obsoletes the necessity to use esdcreate for single
timestep datasets.

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Revision 2187 - Directory Listing
Modified Tue Dec 23 04:13:15 2008 UTC (14 years, 2 months ago) by caltinay

Moved escriptreader related classes into own namespace.

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Revision 2186 - Directory Listing
Modified Tue Dec 23 03:31:18 2008 UTC (14 years, 2 months ago) by caltinay

escript2silo was linked to libescriptreader using its relative path. Fixed that
by using a separate environment for the tools.

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Revision 2185 - Directory Listing
Modified Mon Dec 22 04:41:03 2008 UTC (14 years, 3 months ago) by caltinay

Updated savanna scons file to pick up Silo library.

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Revision 2184 - Directory Listing
Modified Mon Dec 22 04:27:26 2008 UTC (14 years, 3 months ago) by caltinay

Scons'ified escriptreader library and tools. Added checks and options for the
Silo library which is required for escript2silo and optional for the library.
Updated shake75 options file.

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Revision 2183 - Directory Listing
Modified Fri Dec 19 03:52:50 2008 UTC (14 years, 3 months ago) by caltinay

Added escriptreader library with tools. For more information refer to README
file or wait for user documentation.

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Revision 2182 - Directory Listing
Modified Thu Dec 18 03:30:17 2008 UTC (14 years, 3 months ago) by caltinay

Fixed some more typos

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Revision 2181 - Directory Listing
Modified Thu Dec 18 00:58:48 2008 UTC (14 years, 3 months ago) by caltinay

Fixed two typos in bibliography

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Revision 2180 - Directory Listing
Modified Thu Dec 18 00:30:25 2008 UTC (14 years, 3 months ago) by caltinay

Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 3).
With boost 1.37 all epydoc warnings are gone now.
This commit should be a no-op.

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Revision 2179 - Directory Listing
Modified Thu Dec 18 00:23:55 2008 UTC (14 years, 3 months ago) by caltinay

Fixed compilation with boost 1.37 (namespace clash).

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Revision 2178 - Directory Listing
Modified Thu Dec 18 00:08:58 2008 UTC (14 years, 3 months ago) by artak

AMG coupling parameter added to options file.

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Revision 2177 - Directory Listing
Modified Wed Dec 17 23:51:23 2008 UTC (14 years, 3 months ago) by jfenwick

used unused variable.
Added support for limiting the size of lazy expression trees.
500,000 seems a bit high

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Revision 2172 - Directory Listing
Modified Wed Dec 17 08:30:12 2008 UTC (14 years, 3 months ago) by phornby

Fixed some signed/unsigned comparisons occurin g via MAX(). 
They were harmless anyway.

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Revision 2171 - Directory Listing
Modified Wed Dec 17 08:21:29 2008 UTC (14 years, 3 months ago) by phornby

Unitary minus applied to unsigned returns unsigned error fixed
lines 1124 & 1142. Probably not what was intended......

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Revision 2170 - Directory Listing
Modified Wed Dec 17 06:16:43 2008 UTC (14 years, 3 months ago) by jfenwick

Another unit test fix

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Revision 2169 - Directory Listing
Modified Wed Dec 17 03:08:58 2008 UTC (14 years, 3 months ago) by caltinay

Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 2).
All epydoc warnings for these files have been fixed.
This commit should be a no-op.

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Revision 2168 - Directory Listing
Modified Wed Dec 17 00:50:37 2008 UTC (14 years, 3 months ago) by artak

methods are added for loading right-hand-side from MM format

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Revision 2167 - Directory Listing
Modified Tue Dec 16 23:31:05 2008 UTC (14 years, 3 months ago) by jfenwick

Adjust tests for changes to number of buffers required.
Prevent cpp unit test from failing.

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Revision 2166 - Directory Listing
Modified Tue Dec 16 06:08:02 2008 UTC (14 years, 3 months ago) by jfenwick

Fixed a bug related to lazy trace

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Revision 2165 - Directory Listing
Modified Tue Dec 16 05:32:43 2008 UTC (14 years, 3 months ago) by artak

testing level as a parameter added

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Revision 2164 - Directory Listing
Modified Tue Dec 16 04:00:23 2008 UTC (14 years, 3 months ago) by artak

escript library added

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Revision 2163 - Directory Listing
Modified Tue Dec 16 03:55:06 2008 UTC (14 years, 3 months ago) by artak

minor

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Revision 2162 - Directory Listing
Modified Tue Dec 16 03:51:27 2008 UTC (14 years, 3 months ago) by artak

Unused variable removed

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Revision 2161 - Directory Listing
Modified Tue Dec 16 03:31:00 2008 UTC (14 years, 3 months ago) by artak

Paso Testing target is added.

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Revision 2160 - Directory Listing
Modified Tue Dec 16 03:29:54 2008 UTC (14 years, 3 months ago) by artak

Testing envirounment for PASO

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Revision 2159 - Directory Listing
Modified Tue Dec 16 03:27:16 2008 UTC (14 years, 3 months ago) by artak

Numerous bags are fixed for loading MatrixMarket files.

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Revision 2158 - Directory Listing
Modified Mon Dec 15 07:17:47 2008 UTC (14 years, 3 months ago) by caltinay

Assorted spelling, grammar, whitespace and copy/paste error fixes (Part 1).
This commit should be a no-op.

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Revision 2157 - Directory Listing
Modified Mon Dec 15 06:05:58 2008 UTC (14 years, 3 months ago) by jfenwick

Some lazy fixes to the symmetric operation.

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Revision 2156 - Directory Listing
Modified Mon Dec 15 05:09:02 2008 UTC (14 years, 3 months ago) by gross

some modifications to the iterative solver to make them easier to use. 
There are also improved versions of the Darcy flux solver and the incompressible solver.

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Revision 2155 - Directory Listing
Modified Mon Dec 15 04:12:58 2008 UTC (14 years, 3 months ago) by jfenwick

Test

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Revision 2154 - Directory Listing
Modified Mon Dec 15 01:50:56 2008 UTC (14 years, 3 months ago) by trankine

* added include based on Joel's advice. Build now working on win32. unit tests not run yet...

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Revision 2153 - Directory Listing
Modified Fri Dec 12 00:18:18 2008 UTC (14 years, 3 months ago) by jfenwick

Fixed a bug related to lazy tensor product.

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Revision 2152 - Directory Listing
Modified Thu Dec 11 04:26:42 2008 UTC (14 years, 3 months ago) by jfenwick

Fixed some errors related to lazy processing of scalars.
AutoLazy passes more unit tests before failing.

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Revision 2151 - Directory Listing
Modified Wed Dec 10 06:34:25 2008 UTC (14 years, 3 months ago) by caltinay

Moved common functionality from saveDX/VTK into private method. May be used
for future save* methods.

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Revision 2150 - Directory Listing
Modified Wed Dec 10 05:57:12 2008 UTC (14 years, 3 months ago) by caltinay

Removed unnecessary "magic name length".

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Revision 2149 - Directory Listing
Modified Wed Dec 10 05:08:17 2008 UTC (14 years, 3 months ago) by caltinay

Fixed a typo in error message.

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Revision 2148 - Directory Listing
Modified Wed Dec 10 04:57:35 2008 UTC (14 years, 3 months ago) by lgraham

Updated the LevelSet class section in the Models chapter. The section is contained in a .tex file at the moment to avoid conflict.

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Revision 2147 - Directory Listing
Modified Wed Dec 10 04:41:26 2008 UTC (14 years, 3 months ago) by jfenwick

Made some changes to c++ unit tests to accomodate AUTOLAZY.
whereZero and whereNonZero can now work with lazy data.
There are some double frees if AUTOLAZY is turned on so don't use it yet.

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Revision 2146 - Directory Listing
Modified Wed Dec 10 02:59:46 2008 UTC (14 years, 3 months ago) by jfenwick

Replaced duplicate code in Data with macro calls.
Added AUTOLAZY parameter (defaults to off for now.)

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Revision 2144 - Directory Listing
Modified Wed Dec 10 00:31:03 2008 UTC (14 years, 3 months ago) by artak

Some bugs are fixed: FSCANF_CHECK is returned NULL does not matter what. There are still some issues with ..._loadMM.

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Revision 2142 - Directory Listing
Modified Tue Dec 9 06:22:57 2008 UTC (14 years, 3 months ago) by jfenwick

Added showEscriptParams to output a list of available params.

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Revision 2141 - Directory Listing
Modified Tue Dec 9 04:32:32 2008 UTC (14 years, 3 months ago) by caltinay

saveVTK: Reviewed and changed parts of this function due to several issues.
Confirmed that it's still working using finley/test/python/generate_dumps.py
(manually inserted saveVTK) with and without MPI on 1 and 4 processors.

Changes include:
- removed unnecessary USE_VTK check - we are not using any VTK functions
- fixed writing of Rec9 & Hex27 connectivity data in MPI mode
- fixed some cases where the file was not closed and memory was not freed
- replaced many instances of fprintf by fputs (simple strings)
- some minor optimizations by moving or initializing variables and combining
  if-clauses
- got rid of ~300 lines of code and switched to consistent indentation making
  the file a bit better readable

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Revision 2138 - Directory Listing
Modified Mon Dec 8 02:27:07 2008 UTC (14 years, 3 months ago) by lgraham

starting a section for the Level Set class in the Models chapter.

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Revision 2132 - Directory Listing
Modified Fri Dec 5 00:18:06 2008 UTC (14 years, 3 months ago) by jfenwick

So its not just the Mac that needed -Wno-strict-aliasing

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Revision 2131 - Directory Listing
Modified Thu Dec 4 06:09:50 2008 UTC (14 years, 3 months ago) by artak

Openmp bug is fixed in Paso_cum_sum and some printouts removed from Solver_AMG

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Revision 2130 - Directory Listing
Modified Thu Dec 4 05:56:45 2008 UTC (14 years, 3 months ago) by jfenwick

Modifications to keep both the mac and linux happy.

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Revision 2129 - Directory Listing
Modified Thu Dec 4 03:53:02 2008 UTC (14 years, 3 months ago) by lgraham

Added RT2D.py python script for levelset tutorial to examples directory.

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Revision 2128 - Directory Listing
Modified Thu Dec 4 03:48:22 2008 UTC (14 years, 3 months ago) by lgraham

Added description of Rayleigh-Taylor instability python script, and a note on visualising the output with visit.

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Revision 2127 - Directory Listing
Modified Thu Dec 4 03:42:45 2008 UTC (14 years, 3 months ago) by lgraham

added figures of simulation output for Rayleigh-Taylor instability; produced by visIt 

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Revision 2126 - Directory Listing
Modified Thu Dec 4 00:13:03 2008 UTC (14 years, 3 months ago) by ksteube

fixed a logic mess I had made in Paso_MPIInfo_noError()

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Revision 2125 - Directory Listing
Modified Wed Dec 3 09:13:10 2008 UTC (14 years, 3 months ago) by phornby

Just the usual signed/unsigned mismatch corrections. Should be harmless.
this checkin is to propagate the changes to other platforms for testing.

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Revision 2123 - Directory Listing
Modified Wed Dec 3 03:26:02 2008 UTC (14 years, 3 months ago) by gross

typo fixed

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Revision 2122 - Directory Listing
Modified Wed Dec 3 02:52:28 2008 UTC (14 years, 3 months ago) by artak

Codition is added in the corsening process to avoid rows with very small row sum.

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Revision 2121 - Directory Listing
Modified Wed Dec 3 00:25:08 2008 UTC (14 years, 3 months ago) by jfenwick

Removing pdf from repository.

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Revision 2120 - Directory Listing
Modified Tue Dec 2 06:21:49 2008 UTC (14 years, 3 months ago) by lgraham

Added Rayleigh-Taylor instability code into users guide

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Revision 2115 - Directory Listing
Modified Tue Dec 2 01:21:07 2008 UTC (14 years, 3 months ago) by lgraham

Added in theory of the reinitialisation procedure for the level set method.

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Revision 2114 - Directory Listing
Modified Tue Dec 2 01:16:25 2008 UTC (14 years, 3 months ago) by ksteube

a new script to create a source distribution file

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Revision 2113 - Directory Listing
Modified Mon Dec 1 06:27:14 2008 UTC (14 years, 3 months ago) by artak

Temporary solution for nusty rows: a condition added 

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Revision 2112 - Directory Listing
Modified Mon Dec 1 02:53:58 2008 UTC (14 years, 3 months ago) by artak

Uses Jacobi as a smoother and beats any preconditioner in 2D(for some problems) where number of elemens in one direction is more that 200

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Revision 2110 - Directory Listing
Modified Fri Nov 28 05:55:00 2008 UTC (14 years, 3 months ago) by ksteube

Fixed nightly documentation.
Removed time command from wrapper. I thought it was standard UNIX but
somebody's system didn't have it, so I removed it.

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Revision 2109 - Directory Listing
Modified Fri Nov 28 05:09:36 2008 UTC (14 years, 3 months ago) by jfenwick

An attempt at a license file.

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Revision 2108 - Directory Listing
Modified Fri Nov 28 05:09:23 2008 UTC (14 years, 3 months ago) by gross

some minor changes to PCG and some extra suspicious characters.

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Revision 2107 - Directory Listing
Modified Fri Nov 28 04:39:07 2008 UTC (14 years, 3 months ago) by artak

Current version of AMG uses ILU for relaxation, however it is not stable when schur matrix becames more denser. For example it is not stable for -e paramenter is more 400 in 2D for convection problem 

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Revision 2106 - Directory Listing
Modified Fri Nov 28 04:31:23 2008 UTC (14 years, 3 months ago) by jfenwick

Removing files which are unused/old/not-distributable.

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Revision 2105 - Directory Listing
Modified Fri Nov 28 01:52:12 2008 UTC (14 years, 3 months ago) by jfenwick

Data::copySelf() now returns an object instead of a pointer.
Fixed a bug in copyFromArray relating to expanded data.

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Revision 2104 - Directory Listing
Modified Thu Nov 27 05:36:47 2008 UTC (14 years, 3 months ago) by jfenwick

Fixed non-compilage.
Removed mysterious t and t! from output.

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Revision 2102 - Directory Listing
Modified Thu Nov 27 00:32:33 2008 UTC (14 years, 3 months ago) by jfenwick

Fixed wrapper script to OpenMP can run without invoking mpi.

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Revision 2101 - Directory Listing
Modified Wed Nov 26 08:29:08 2008 UTC (14 years, 3 months ago) by gross

UMF link check activated. BLAS check stil fails.

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Revision 2100 - Directory Listing
Modified Wed Nov 26 08:13:00 2008 UTC (14 years, 3 months ago) by gross

This commit cleans up the incompressible solver and adds a DarcyFlux solver in model module. 
Some documentation for both classes has been added.
The convection code is only linear at the moment.

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Revision 2098 - Directory Listing
Modified Tue Nov 25 12:04:36 2008 UTC (14 years, 3 months ago) by phornby

Fix unsigned/signed comparison.

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Revision 2097 - Directory Listing
Modified Tue Nov 25 12:03:29 2008 UTC (14 years, 3 months ago) by phornby

moved the code

#ifndef __const
# if (defined __STDC__ && __STDC__) || defined __cplusplus
#  define __const	const
# else
#  define __const
# endif
#endif

from escript/src/system_dep.h to esysUtils/src/system_dep.h, just for blocktimer's sake.

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Revision 2096 - Directory Listing
Modified Tue Nov 25 10:29:27 2008 UTC (14 years, 3 months ago) by phornby

Starting from the recent reversion:

1. Leave __del__ alone.
2. mkstemp() actually opens the file it creates, only to be opened again in getMeshHandler(), so add an os.close() straight after the mkstemp()'s
3. in getMeshHandler(), close the script file immediately when finished with it instead of doing something non-local in __del__.

Untested on 'nix's at this point. Commit is for testing purposes.

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Revision 2094 - Directory Listing
Modified Tue Nov 25 05:45:41 2008 UTC (14 years, 3 months ago) by caltinay

saveVTK: Close the file even if error is set upon completion. Note that
in some places the function still returns without proper clean up but
this won't be fixed until the rewrite to avoid more mess in the code.

---

Revision 2092 - Directory Listing
Modified Tue Nov 25 04:18:17 2008 UTC (14 years, 3 months ago) by jfenwick

Added macro to disable debug output from Lazy Data.

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Revision 2091 - Directory Listing
Modified Tue Nov 25 03:26:51 2008 UTC (14 years, 3 months ago) by ksteube

Updates for running epydoc and creating examples_zipfile

---

Revision 2090 - Directory Listing
Modified Mon Nov 24 06:41:08 2008 UTC (14 years, 3 months ago) by ksteube

Reverted pycad/py_src/gmsh.py to before revision 1904.
A change had been made to the way the geo file was opened.

---

Revision 2089 - Directory Listing
Modified Mon Nov 24 06:07:29 2008 UTC (14 years, 3 months ago) by jfenwick

Resolve mantis issue 216.

Removed the asAbstractContinuousDomain(X) member which did not take cast 
failure into account.
Rewrote the few places where it was used.

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Revision 2088 - Directory Listing
Modified Mon Nov 24 05:39:38 2008 UTC (14 years, 3 months ago) by caltinay

pycad: Added missing 'self' scope

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Revision 2087 - Directory Listing
Modified Mon Nov 24 04:51:30 2008 UTC (14 years, 3 months ago) by jfenwick

Addressing mantis issue #221.
Interpolation.. and probeInterpolation.. now "work" for the NullDomain.
Work means throw a descriptive exception if you try to move into or out 
of the NullDomain.
The bad_cast exception related to this has been fixed.

---

Revision 2086 - Directory Listing
Modified Mon Nov 24 02:38:50 2008 UTC (14 years, 3 months ago) by jfenwick

Added checks in C_GeneralTensorProduct (Data:: and Delayed forms) as 
well as the DataAbstract Constructor to prevent Objects with Rank>4 
being created.

Moved the relevant #define into systemdep.

Removed some comments.

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Revision 2085 - Directory Listing
Modified Mon Nov 24 00:45:48 2008 UTC (14 years, 3 months ago) by jfenwick

Added c++ unit tests for new operations.
Added resolve to some operations in Data

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Revision 2084 - Directory Listing
Modified Fri Nov 21 05:20:42 2008 UTC (14 years, 4 months ago) by jfenwick

Fixed a warning in cpp unit tests under dodebug
Pointed the url for python doco at shake200 rather than iservo.
Added support for trace and transpose to LazyData.
Fixed bug in trace to initialise running totals.

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Revision 2083 - Directory Listing
Modified Fri Nov 21 01:46:31 2008 UTC (14 years, 4 months ago) by caltinay

Same "fix" as before for unused fp_out and fp_err.

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Revision 2082 - Directory Listing
Modified Fri Nov 21 01:46:05 2008 UTC (14 years, 4 months ago) by caltinay

Removed unused variable.

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Revision 2081 - Directory Listing
Modified Fri Nov 21 01:28:31 2008 UTC (14 years, 4 months ago) by caltinay

escript/Data: Another fix for parallel var initialization. Also, the (error) return value of MPI_Gather was not used. I applied the same 'hack' as in other places in the file, namely declaring the variable beforehand but still ignoring the return value :-/

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Revision 2080 - Directory Listing
Modified Fri Nov 21 01:20:14 2008 UTC (14 years, 4 months ago) by caltinay

paso/SchurComplement: Fixed variable initialization for OpenMP parallelization.

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Revision 2079 - Directory Listing
Modified Fri Nov 21 01:04:56 2008 UTC (14 years, 4 months ago) by artak

Changed comment operator from // to /* */, because it does not compile in our C standart

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Revision 2078 - Directory Listing
Modified Thu Nov 20 16:10:10 2008 UTC (14 years, 4 months ago) by phornby

Two changes.

1. Move blocktimer from escript to esysUtils.
2. Make it possible to link to paso as a DLL or .so.

Should have no effect on 'nix's

In respect of 1., blocktimer had begun to spring up everywhere, so
for the moment I thought it best to move it to the only other library that
pops up all over the place.

In respect of 2., paso needed to be a DLL in order to use the windows intelc /fast
option, which does aggressive multi-file optimisations. Even in its current form, it either
vectorises or parallelises  hundreds more loops in the esys system than appear in the pragmas.

In achieving 2. I have not been too delicate in adding

PASO_DLL_API

declarations to the .h files in paso/src. Only toward the end of the process of
the conversion, when the number of linker errors dropped below 20, say, did I choosy about what
functions in a header I declared PASO_DLL_API. As a result, there are likely to be many routines
declared as external functions symbols that are in fact internal to the paso DLL. 
Why is this an issue?  It prevents the intelc compiler from getting aggressive on the paso module.
With pain there is sometimes gain. At least all the DLL rules in windows give good
(non-microsoft) compiler writers a chance to really shine.

So, if you should see a PASO_DLL_API on a function in a paso header file,
and think to yourself, "that function is only called in paso, why export it?", then feel free to
delete the PASO_DLL_API export declaration.

Here's hoping for no breakage.....

---

Revision 2076 - Directory Listing
Modified Thu Nov 20 12:34:17 2008 UTC (14 years, 4 months ago) by phornby

I may get into trouble for this.
boost-python 1.34 does have a docstring_options class,
but does not have a 3 argument constructor for
it. So the test has been modified to 


#if ((BOOST_VERSION/100)%1000 > 34) || (BOOST_VERSION/100000 >1)

If you wish to make things more delicate, one can define a 2 argument construction
of docopt just for 1.34 (with an #elif). Probably not worth the effort frankly.

Hope that this has not broken anything for anyone else. The SVN logs suggest this is a
little fragile.....

Also, please be aware that much of our chemistry interface code, that we wish to use with
escript, makes extensive use of boost python.
Having two different boost versions mucking with the python interpreter sounds
like a really bad idea, I'm sure you'll agree.
The problem is that it is not a simple task for us to build new versions of boost-python
on all our platforms. Consequently, it would be nice to be informed when you guys
intend to upgrade a support library of this nature so that we can plan and allocate
resources to keep up.

Cheers.

---

Revision 2074 - Directory Listing
Modified Thu Nov 20 11:02:07 2008 UTC (14 years, 4 months ago) by phornby

Nearly there with dll'ing paso.

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Revision 2073 - Directory Listing
Modified Thu Nov 20 10:51:41 2008 UTC (14 years, 4 months ago) by phornby

Still working away at makeing paso sharable on windows.

---

Revision 2072 - Directory Listing
Modified Thu Nov 20 10:40:19 2008 UTC (14 years, 4 months ago) by phornby

More PASO_DLL_API declarations for externally called routines.

---

Revision 2071 - Directory Listing
Modified Thu Nov 20 10:29:56 2008 UTC (14 years, 4 months ago) by phornby

More preparation for making paso a dll.

---

Revision 2070 - Directory Listing
Modified Thu Nov 20 10:11:13 2008 UTC (14 years, 4 months ago) by phornby

Further preparation for sharable paso.

---

Revision 2069 - Directory Listing
Modified Thu Nov 20 09:13:19 2008 UTC (14 years, 4 months ago) by phornby

Another ElementTypeId TypeId=NoType; fix.

---

Revision 2068 - Directory Listing
Modified Thu Nov 20 09:11:01 2008 UTC (14 years, 4 months ago) by phornby

Interim commit getting paso ready for becoming a shared library.

---

Revision 2067 - Directory Listing
Modified Thu Nov 20 06:22:56 2008 UTC (14 years, 4 months ago) by caltinay

Moved 'make dir' operation to the correct spot and extended the number
of timesteps a bit.

---

Revision 2066 - Directory Listing
Modified Thu Nov 20 05:31:33 2008 UTC (14 years, 4 months ago) by jfenwick

Fixed Data::toString to look at the amount of data actually stored rather than the number of points in the domain.

Added support for GeneralTensorProduct to LazyData

---

Revision 2065 - Directory Listing
Modified Thu Nov 20 04:25:47 2008 UTC (14 years, 4 months ago) by jfenwick

Have the epydoc put its output in the correct place before anyone 
notices.

---

Revision 2064 - Directory Listing
Modified Thu Nov 20 04:06:34 2008 UTC (14 years, 4 months ago) by jfenwick

docstring_options was added in boost 1.34 - macro'd it out if you are 
compiling earlier than that.

---

Revision 2063 - Directory Listing
Modified Wed Nov 19 04:59:43 2008 UTC (14 years, 4 months ago) by jfenwick

- Removed some deprecated directories.
- Removed the pythfilter script for converting python doco into c++ stubs. The license was unspecified and we don't use it.
- Suppressed long long warnings on gcc (the Mac complained).
- svn:ignored Mac library suffixes in lib directory

---

Revision 2062 - Directory Listing
Modified Wed Nov 19 04:32:13 2008 UTC (14 years, 4 months ago) by jfenwick

Fixed api_epydoc so that it actually rebuilds the doco when required.

---

Revision 2061 - Directory Listing
Modified Wed Nov 19 03:40:21 2008 UTC (14 years, 4 months ago) by jfenwick

Fixing some warnings from epydoc.
Disabled c++ signatures in python docstrings.
Removed references to Bruce in epydoc and the users guide.

---

Revision 2060 - Directory Listing
Modified Tue Nov 18 00:18:08 2008 UTC (14 years, 4 months ago) by jfenwick

Okay, so -isystem on the whole /usr/include directory appears to prevent 
compiling.  I suspect this might be something about changing the 
priority of includes.

Fixed.

---

Revision 2059 - Directory Listing
Modified Mon Nov 17 22:57:50 2008 UTC (14 years, 4 months ago) by gross

changes as suggested by phornby

---

Revision 2058 - Directory Listing
Modified Mon Nov 17 13:35:10 2008 UTC (14 years, 4 months ago) by phornby

Added (as comment for the moment) very aggressive intelc optimisation.
Also add options (as comments) to compile esysUtis and paso as DLL's so
I can eventually use the /fast option on the intelc compiler.

---

Revision 2057 - Directory Listing
Modified Mon Nov 17 13:30:46 2008 UTC (14 years, 4 months ago) by phornby

Prepare this file for the possibility of dynamic linkage.

SVN is doing something weird to me... I'm sure I committed this change already...

---

Revision 2056 - Directory Listing
Modified Mon Nov 17 13:27:55 2008 UTC (14 years, 4 months ago) by phornby

Prepare this file for the possibility of dynamic linkage.

---

Revision 2055 - Directory Listing
Modified Mon Nov 17 13:26:40 2008 UTC (14 years, 4 months ago) by phornby

I have found that windows intelc /Qiop option,
which performs multi-file loop parallisation and vectorisation,
taking account of all the information in a single .obj file that it generates,
will get it's second phase link action right if it is linking
to DLL's rather than statically linking. This and other SConscripts
have been modified to take account of the options that select a static
or dynamic library.

---

Revision 2054 - Directory Listing
Modified Mon Nov 17 13:20:41 2008 UTC (14 years, 4 months ago) by phornby

Added the share_esysUtils and share_paso options
both defaulting to False, to allow finer control over
the nature of these libraries. Following log messages will explain.

---

Revision 2053 - Directory Listing
Modified Mon Nov 17 11:24:40 2008 UTC (14 years, 4 months ago) by phornby

Fix the test for erf() under intelc on windows to something more informative.

---

Revision 2052 - Directory Listing
Modified Mon Nov 17 11:15:07 2008 UTC (14 years, 4 months ago) by phornby

MALLOC_CHUNK -> malloc_chunk in case there is a name-space
collision with a macro at some time in the future.

---

Revision 2051 - Directory Listing
Modified Mon Nov 17 09:24:02 2008 UTC (14 years, 4 months ago) by phornby

Now add the erf() test back for windows under the intelc compiler.

---

Revision 2050 - Directory Listing
Modified Mon Nov 17 08:59:57 2008 UTC (14 years, 4 months ago) by phornby

OK, I have to include this file in the experiment
to use the intelc math library on windows.

---

Revision 2049 - Directory Listing
Modified Mon Nov 17 08:54:33 2008 UTC (14 years, 4 months ago) by phornby

A little refinement of what to leave out of UnaryFuncs.h
if using the intelc compiler on windows.

---

Revision 2048 - Directory Listing
Modified Mon Nov 17 08:46:00 2008 UTC (14 years, 4 months ago) by phornby

Experimental commit to move the code to a windows box
on the other side of a firewall. Purpose: add support for the
imploved intelc math library on windows.

---

Revision 2045 - Directory Listing
Modified Sat Nov 15 14:08:09 2008 UTC (14 years, 4 months ago) by phornby

Make the windows intel compiler work harder at un-rolling loops and inlining absolutely everything
it can.

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Revision 2044 - Directory Listing
Modified Sat Nov 15 13:19:49 2008 UTC (14 years, 4 months ago) by phornby

Consolidate many of the icl speed options into the /Ox option.

---

Revision 2043 - Directory Listing
Modified Sat Nov 15 12:53:27 2008 UTC (14 years, 4 months ago) by phornby

Make the intel compiler work for its money.

---

Revision 2042 - Directory Listing
Modified Sat Nov 15 12:52:46 2008 UTC (14 years, 4 months ago) by phornby

Prevent Windows compilers from keeping their own program database file.
This allows the use of the -jn scons option on Windows.

---

Revision 2041 - Directory Listing
Modified Sat Nov 15 12:45:15 2008 UTC (14 years, 4 months ago) by phornby

ESYS_STATIC_LIB no longer needs to be defined in SConscript files.

---

Revision 2040 - Directory Listing
Modified Sat Nov 15 12:43:11 2008 UTC (14 years, 4 months ago) by phornby

Handle ESYS_STATIC_LIB more elegantly, and make it
a two-liner to turn it into a DLL if needed.

---

Revision 2039 - Directory Listing
Modified Sat Nov 15 09:15:46 2008 UTC (14 years, 4 months ago) by phornby

Remove the "const from the alpha argument of 
Paso_SystemMatrix_MatrixVector_CSR_OFFSET0()
in order to match it's declaration.

This is C, and the double is passed by value, so alpha is
by nature const. This is C code, not C++. The const keyword has no place in C.

---

Revision 2038 - Directory Listing
Modified Fri Nov 14 00:12:58 2008 UTC (14 years, 4 months ago) by ksteube

Change -isystem to point to boost_path and python_path instead of to /usr/include

---

Revision 2037 - Directory Listing
Modified Thu Nov 13 06:17:12 2008 UTC (14 years, 4 months ago) by jfenwick

Fixed some warnings in the unit tests.
Added support for symmetric and nonsymmetric operations on LazyData.

---

Revision 2036 - Directory Listing
Modified Thu Nov 13 04:35:06 2008 UTC (14 years, 4 months ago) by jfenwick

A fix to deal with boost1.34s badness

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Revision 2035 - Directory Listing
Modified Thu Nov 13 03:16:09 2008 UTC (14 years, 4 months ago) by jfenwick

Putting poisson.py back

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Revision 2034 - Directory Listing
Modified Thu Nov 13 03:03:42 2008 UTC (14 years, 4 months ago) by artak

variable <set> is initilized to get rid of compiler warnning errors. finley/src/Quadrature.c

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Revision 2033 - Directory Listing
Modified Wed Nov 12 08:14:11 2008 UTC (14 years, 4 months ago) by phornby

As in the last message, add an extra CPPDEFINE to py_local_wrapper_env

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Revision 2032 - Directory Listing
Modified Wed Nov 12 08:11:19 2008 UTC (14 years, 4 months ago) by phornby

Missed an extra additional CPPDEFINES for the py_wrapper_local_env.

---

Revision 2031 - Directory Listing
Modified Wed Nov 12 08:02:33 2008 UTC (14 years, 4 months ago) by phornby

Need finer control than INTERFACE_STATIC_LIB could exert. Now there is a
XXX_STATIC_LIB for each lib.

---

Revision 2030 - Directory Listing
Modified Wed Nov 12 07:34:08 2008 UTC (14 years, 4 months ago) by phornby

Fix the undef'fing of _DLL_API in windows case.

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Revision 2029 - Directory Listing
Modified Wed Nov 12 07:27:05 2008 UTC (14 years, 4 months ago) by phornby

Test a more elegant way of handling XXX_DLL_API macros.

---

Revision 2028 - Directory Listing
Modified Tue Nov 11 03:07:59 2008 UTC (14 years, 4 months ago) by phornby

add the test for __const definition because recent changes
have broken the windows compile of paso.

Fingers crossed this does not break anything else.

---

Revision 2027 - Directory Listing
Modified Tue Nov 11 02:52:24 2008 UTC (14 years, 4 months ago) by phornby

Ensure ESCRIPT_EXPORTS is defined only while compiling escript on windows.
A similar comment applies to FINLEY_EXPORTS.

SConstruct:
Fixed a comment.
reformatted the Export() call, and added IS_WINDOWS_PLATFORM to the exports.

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Revision 2026 - Directory Listing
Modified Tue Nov 11 01:56:54 2008 UTC (14 years, 4 months ago) by jfenwick

I have changed the default scons options for gcc to be much more picky about warnings.
By default warnings will be treated as errors; so a program with warnings won't compile.

If you need to turn this off, usewarnings=no will work.

The previous usepedantic oprtion is no longer turned on by default.

This should have no effect on any of the other compilers.
If anyone wants to jump in and supply sensible values for the fatalwarnings variable for their favourite compiler go ahead.

---

Revision 2025 - Directory Listing
Modified Tue Nov 11 00:18:33 2008 UTC (14 years, 4 months ago) by jfenwick

__const on some strings

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Revision 2021 - Directory Listing
Modified Mon Nov 10 14:07:49 2008 UTC (14 years, 4 months ago) by phornby

Use the NO_ARG trick on the PROC_OP macro expansions.

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Revision 2020 - Directory Listing
Modified Mon Nov 10 14:02:17 2008 UTC (14 years, 4 months ago) by phornby

THROW_ANY is dead. Pls read comments in esysUtils/src/system_dep.h

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Revision 2019 - Directory Listing
Modified Mon Nov 10 13:49:00 2008 UTC (14 years, 4 months ago) by phornby

Yet another concerted effort to handle missing macro arguments
in a portable way.

---

Revision 2018 - Directory Listing
Modified Mon Nov 10 13:31:43 2008 UTC (14 years, 4 months ago) by phornby

Only import mathimf.h on win32 with intelc. Allow others to use the
standard math.h

change the #ifndef const -> #ifndef __const (oops!!)

---

Revision 2017 - Directory Listing
Modified Mon Nov 10 13:19:38 2008 UTC (14 years, 4 months ago) by phornby

Tighten the test for including mathimf.h to be windows specific.

Also another experiment in eliminating THROW_ANY

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Revision 2014 - Directory Listing
Modified Mon Nov 10 12:44:51 2008 UTC (14 years, 4 months ago) by phornby

Refine the intelc compiler options, and link to the dll version of libguide.

---

Revision 2013 - Directory Listing
Modified Mon Nov 10 12:16:32 2008 UTC (14 years, 4 months ago) by phornby

Add the tools_names vars to control the compiler toolset scons uses
on windows platforms. (See cgisrv3_options.py for example of use).

---

Revision 2012 - Directory Listing
Modified Mon Nov 10 12:13:45 2008 UTC (14 years, 4 months ago) by phornby

Grew tired of having to edit SConstruct every time I changed from
MSVC to intelc. Added the tools_names option to allow control of tools
in the Environment call from the options file. This only applies to
the windows branch at present.

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Revision 2011 - Directory Listing
Modified Mon Nov 10 10:54:38 2008 UTC (14 years, 4 months ago) by phornby

Commit this options file because cgisrv3 is to be the windows auto build and test machine.

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Revision 2009 - Directory Listing
Modified Mon Nov 10 10:01:50 2008 UTC (14 years, 4 months ago) by phornby

Simplify the _del_ method's file closure and unlinking based upon mkstemp's advertised
behaviour.

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Revision 2008 - Directory Listing
Modified Mon Nov 10 08:59:14 2008 UTC (14 years, 4 months ago) by phornby

Signed/unsigned comparisons eliminated (just loop variables, easy fix).

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Revision 2007 - Directory Listing
Modified Mon Nov 10 06:34:11 2008 UTC (14 years, 4 months ago) by jfenwick

Added a private operator= to Taipan to prevent people from copying trying to copy instances.
Not that we have any of that.... but if someone ever tries, we'll be ready for them.

I have come to the conclusion that -Weffc++ is not usable for us. Its output is too noisy complaining about classes which we do not control.

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Revision 2006 - Directory Listing
Modified Mon Nov 10 03:07:08 2008 UTC (14 years, 4 months ago) by jfenwick

Updating svn:ignore properties.

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Revision 2005 - Directory Listing
Modified Mon Nov 10 01:21:39 2008 UTC (14 years, 4 months ago) by jfenwick

Bringing all changes across from schroedinger.
(Note this does not mean development is done, just that it will happen
on the trunk for now).
If anyone notices any problems please contact me.

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Revision 1991 - Directory Listing
Modified Fri Nov 7 04:32:38 2008 UTC (14 years, 4 months ago) by caltinay

finley: Constify two variables.

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Revision 1990 - Directory Listing
Modified Fri Nov 7 04:19:07 2008 UTC (14 years, 4 months ago) by ksteube

Changes to avoid compiler warnings
Finley files now pass -Wall on gcc 4.3.2
	saveVTK.c: replaced printf(string) with printf("%s", string)
	MeshAdapterFactory.cpp: moved a few lines to avoid possible use of uninitialized vars
	MeshAdapter.cpp: initialized ncdims in mesh dump
There is still a warning from a boost include file

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Revision 1989 - Directory Listing
Modified Fri Nov 7 04:11:33 2008 UTC (14 years, 4 months ago) by caltinay

modellib: completely revised tsunami script.
-updated finley usage (due to changed interface)
-moved VTK stuff to one place making it easy to disable (and use dumps instead)
-removed dependency on non-existing data server - script now depends on saved coastline/bathymetry data files OR calls scripts to create the data on the fly.
-PDE and triangulation code is unchanged except indentation updates

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Revision 1986 - Directory Listing
Modified Thu Nov 6 23:33:14 2008 UTC (14 years, 4 months ago) by jfenwick

Warning removal

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Revision 1985 - Directory Listing
Modified Thu Nov 6 22:13:54 2008 UTC (14 years, 4 months ago) by caltinay

finley: Fixed compiler warnings (uninitialized vars). This is only a temporary hack. At a later stage this beast will be rewritten...

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Revision 1984 - Directory Listing
Modified Thu Nov 6 22:10:28 2008 UTC (14 years, 4 months ago) by caltinay

Added shake75 build options file

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Revision 1983 - Directory Listing
Modified Thu Nov 6 22:00:18 2008 UTC (14 years, 4 months ago) by caltinay

Paso: Fixed compilation with OpenMPI

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Revision 1982 - Directory Listing
Modified Thu Nov 6 06:16:07 2008 UTC (14 years, 4 months ago) by ksteube

Changed options file for host shake71 to rodinia

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Revision 1981 - Directory Listing
Modified Thu Nov 6 05:27:33 2008 UTC (14 years, 4 months ago) by jfenwick

More warning removal.

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Revision 1980 - Directory Listing
Modified Thu Nov 6 04:45:08 2008 UTC (14 years, 4 months ago) by artak

sum variable is removed from #pragma

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Revision 1979 - Directory Listing
Modified Thu Nov 6 04:29:58 2008 UTC (14 years, 4 months ago) by artak

warning removal

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Revision 1978 - Directory Listing
Modified Thu Nov 6 04:21:23 2008 UTC (14 years, 4 months ago) by artak

MINRES, TFQMR, GS are added

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Revision 1977 - Directory Listing
Modified Thu Nov 6 03:54:35 2008 UTC (14 years, 4 months ago) by jfenwick

More warning removal.

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Revision 1976 - Directory Listing
Modified Thu Nov 6 03:14:52 2008 UTC (14 years, 4 months ago) by artak

unused variables are removed to get rid of compiler warnings

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Revision 1975 - Directory Listing
Modified Thu Nov 6 03:07:02 2008 UTC (14 years, 4 months ago) by artak

Some variables are initialized to get rid of compiler warnings

---

Revision 1974 - Directory Listing
Modified Thu Nov 6 02:40:10 2008 UTC (14 years, 4 months ago) by jfenwick

Changing ZERO and ONE in Solver.h to PASO_ZERO and PASO_ONE.
Changed three static vars to #defines

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Revision 1973 - Directory Listing
Modified Thu Nov 6 02:31:37 2008 UTC (14 years, 4 months ago) by lgraham

Tidied up the white space between the equations and fixed gramma in the Rayleigh-Taylor Instability (levelset) tutorial.
Will include Escript code soon.

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Revision 1971 - Directory Listing
Modified Thu Nov 6 01:11:23 2008 UTC (14 years, 4 months ago) by artak

Some typos fixed. The rearagments of figure 1, and footnotes added to avoid confusion.

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Revision 1967 - Directory Listing
Modified Wed Nov 5 08:49:39 2008 UTC (14 years, 4 months ago) by phornby

changerd __del__ to close the tmp file before attempting to unlink it. This is required on windows, and probably wise on all platforms.

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Revision 1966 - Directory Listing
Modified Wed Nov 5 04:59:22 2008 UTC (14 years, 4 months ago) by jfenwick

Some more fixes to user guide.

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Revision 1965 - Directory Listing
Modified Wed Nov 5 03:24:09 2008 UTC (14 years, 4 months ago) by caltinay

Fixed working directory of the seismic_wave example.

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Revision 1964 - Directory Listing
Modified Wed Nov 5 03:21:31 2008 UTC (14 years, 4 months ago) by caltinay

user's guide: Reviewed and updated pyvisi documentation.

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Revision 1963 - Directory Listing
Modified Wed Nov 5 03:20:24 2008 UTC (14 years, 4 months ago) by caltinay

user's guide: Fixed some typos.

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Revision 1962 - Directory Listing
Modified Tue Nov 4 07:17:31 2008 UTC (14 years, 4 months ago) by gross

there is an offet missing when copy data to a data point.

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Revision 1961 - Directory Listing
Modified Tue Nov 4 06:09:33 2008 UTC (14 years, 4 months ago) by caltinay

Pyvisi: Fixed wording/typos in readme file.

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Revision 1960 - Directory Listing
Modified Tue Nov 4 05:50:41 2008 UTC (14 years, 4 months ago) by artak

some unsed variables are removed

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Revision 1959 - Directory Listing
Modified Tue Nov 4 01:49:19 2008 UTC (14 years, 4 months ago) by jfenwick

More fixes to doco.

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Revision 1958 - Directory Listing
Modified Mon Nov 3 23:47:16 2008 UTC (14 years, 4 months ago) by jfenwick

Fixed URL to python doc in guide_defs

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Revision 1957 - Directory Listing
Modified Mon Nov 3 06:14:18 2008 UTC (14 years, 4 months ago) by jfenwick

Some fixes to user guide

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Revision 1956 - Directory Listing
Modified Mon Nov 3 05:08:42 2008 UTC (14 years, 4 months ago) by gross

bug fixed.

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Revision 1955 - Directory Listing
Modified Fri Oct 31 04:01:24 2008 UTC (14 years, 4 months ago) by jfenwick

Fixed some macros so they don't add extra spaces.
Switched from input to include for chapters for faster recompile.

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Revision 1954 - Directory Listing
Modified Fri Oct 31 03:22:34 2008 UTC (14 years, 4 months ago) by artak

condition is added to check wheter row sum is ZERO and some new coarsening algorithm is also added

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Revision 1953 - Directory Listing
Modified Thu Oct 30 07:01:11 2008 UTC (14 years, 4 months ago) by phornby

removed one signed/unsigned value comparison. The remaining one at line 863 is far more difficult to deal with.

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Revision 1952 - Directory Listing
Modified Thu Oct 30 06:16:00 2008 UTC (14 years, 4 months ago) by jfenwick

Fixed /* in a comment.
The rank of a datapoint is now an unsigned int.

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Revision 1946 - Directory Listing
Modified Wed Oct 29 05:48:53 2008 UTC (14 years, 4 months ago) by jfenwick

A cleanup of some of the problems I found doing a Wall compile.

Removed some commented out lines.
Swapped some member initialisers.
Removed virtual qualifiers from some methods in FunctionSpace.
Fixed some unused or (possibly) uninitialised variables.

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Revision 1942 - Directory Listing
Modified Wed Oct 29 03:29:35 2008 UTC (14 years, 4 months ago) by phornby

remove unused rtmp var.

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Revision 1941 - Directory Listing
Modified Tue Oct 28 07:51:49 2008 UTC (14 years, 4 months ago) by ksteube

Updated installation directions in the User Guide to simply
point to the instructions on the wiki, which I have already
updated extensively.

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Revision 1940 - Directory Listing
Modified Tue Oct 28 03:50:01 2008 UTC (14 years, 4 months ago) by artak

get Gauss-Seidel factorization moved solverAMG to getAMG. Stopping criterium for corsening changed to depend to the number of unknowns left

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Revision 1939 - Directory Listing
Modified Tue Oct 28 03:47:08 2008 UTC (14 years, 4 months ago) by artak

get Gauss-Seidel factorization moved solverAMG to getAMG. Stopping criterium for corsening changed to depend to the number of unknowns left

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Revision 1937 - Directory Listing
Modified Tue Oct 28 01:26:55 2008 UTC (14 years, 4 months ago) by ksteube

Created a mid-sized test suite 'scalable_tests' as an alternative to 'all_tests'.
These run on small-ish systems and also on all 512 cores of Savanna.
Most features are covered, but it's better to use 'all_tests'.

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Revision 1936 - Directory Listing
Modified Mon Oct 27 23:30:57 2008 UTC (14 years, 4 months ago) by artak

checks openMP for proper break usage

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Revision 1934 - Directory Listing
Modified Mon Oct 27 05:03:12 2008 UTC (14 years, 4 months ago) by artak

some typos

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Revision 1933 - Directory Listing
Modified Mon Oct 27 04:58:59 2008 UTC (14 years, 4 months ago) by artak

Gauss-Seidel which takes into acound initianl x

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Revision 1932 - Directory Listing
Modified Mon Oct 27 04:15:00 2008 UTC (14 years, 4 months ago) by artak

one input parameter is added

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Revision 1931 - Directory Listing
Modified Mon Oct 27 01:31:28 2008 UTC (14 years, 4 months ago) by artak

Direct solver is added to solve_AMG. It is now working but I guess need optimization.

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Revision 1930 - Directory Listing
Modified Fri Oct 24 09:35:55 2008 UTC (14 years, 4 months ago) by phornby

revert to MS compiler for now.

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Revision 1929 - Directory Listing
Modified Fri Oct 24 09:20:17 2008 UTC (14 years, 4 months ago) by phornby

abortive attempt to automate the choice of windows compiler based uponj the options file.

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Revision 1928 - Directory Listing
Modified Fri Oct 24 08:20:23 2008 UTC (14 years, 4 months ago) by phornby

Pass 2 at getting openMP going on windows.
Problem is incompatible mathinf.h and system math.h at this point.

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Revision 1927 - Directory Listing
Modified Fri Oct 24 06:24:49 2008 UTC (14 years, 4 months ago) by phornby

First cut at omp options for windows.

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Revision 1923 - Directory Listing
Modified Thu Oct 23 12:53:39 2008 UTC (14 years, 4 months ago) by phornby

The calls to Finley routines turned out to be cut & past errors, easily fixed.

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Revision 1921 - Directory Listing
Modified Thu Oct 23 11:32:24 2008 UTC (14 years, 4 months ago) by phornby

Jump through hoops to meet the OPENMP 2.5 restrictions on loop variables.
It's all ready for OPENMP 3.0 improvments, and should compile cleanly on other platforms.

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Revision 1920 - Directory Listing
Modified Thu Oct 23 10:05:27 2008 UTC (14 years, 4 months ago) by phornby

remove unused vars.

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Revision 1919 - Directory Listing
Modified Thu Oct 23 10:03:10 2008 UTC (14 years, 4 months ago) by phornby

Remove un-used vars introduced by my _WIN32 compilation branch. This is a checkin to allow a test of both compilation brabches.

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Revision 1918 - Directory Listing
Modified Thu Oct 23 09:14:13 2008 UTC (14 years, 4 months ago) by phornby

fix a signed and unsigned integer comparison. As your meshes get larger, this type of error will bite.

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Revision 1917 - Directory Listing
Modified Thu Oct 23 09:09:31 2008 UTC (14 years, 4 months ago) by phornby

Remove unused vars, do a bit of standardising of indentation, and use the new Pattern_coupling.h to eliminate some implicit function declarations in Solver_AMG.c

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Revision 1916 - Directory Listing
Modified Thu Oct 23 08:51:36 2008 UTC (14 years, 4 months ago) by phornby

This is a fake commit, to note that

Finley_IndexList_insertIndex is being called from paso's Pattern.c.

I was under the impresssion that this was a violation of the module rule forbidding
paso from calling Finley code. I have not fixed this, since I am not the
best person to formulate the workaround. My immediate suggestion would be to move the
functionality into paso, and call it from Finley. However, I'm sure there is a better way.

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Revision 1915 - Directory Listing
Modified Thu Oct 23 08:40:09 2008 UTC (14 years, 4 months ago) by phornby

As far as I can tell, just the new Pattern_coupling.h and Pattern_coupling.h
are all that's needed to compile Pattern_coupling.c

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Revision 1914 - Directory Listing
Modified Thu Oct 23 08:31:22 2008 UTC (14 years, 4 months ago) by phornby

Adding include files back to keep Altix happy.

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Revision 1913 - Directory Listing
Modified Thu Oct 23 08:27:33 2008 UTC (14 years, 4 months ago) by phornby

Create Pattern_coupling.h as there were too many modules that implicitly defined these
functions. This checkin is to test the minimum number of files this change allows me to
include to get Pattern_coupling.c to compile correctly on the Altix.

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Revision 1912 - Directory Listing
Modified Thu Oct 23 05:08:31 2008 UTC (14 years, 4 months ago) by ksteube

Finished wrapper script by setting PATH.

The wrapper script reproduces the environment of the person who built
the software + values specified in his hostname_options.py file.  A
user can run a python script without setting any environment variables
or loading any SGI modules.

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Revision 1909 - Directory Listing
Modified Thu Oct 23 01:47:50 2008 UTC (14 years, 4 months ago) by ksteube

Updated the wrapper script to set MPI_NUM_MEMORY_REGIONS=0 to avoid
bug where truncated messages are sent in hybrid runs under MPT MPI

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Revision 1907 - Directory Listing
Modified Wed Oct 22 11:41:18 2008 UTC (14 years, 5 months ago) by phornby

Mesh_read.c - remove a debug printout introduced by me (oops).

Pattern_coupling.c - remove declaration of naib where it was not used, and remove naib frpm
omp pragmas where it was not declared, and not used.

Apparently cognac.ivec.org did not like this??

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Revision 1906 - Directory Listing
Modified Wed Oct 22 08:48:32 2008 UTC (14 years, 5 months ago) by phornby

This file was pining for a final return at its end.

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Revision 1905 - Directory Listing
Modified Wed Oct 22 08:40:05 2008 UTC (14 years, 5 months ago) by phornby

I did a lot of rationalising of the indentation, which looks like an alarming number of changes. I just got sick of my editor getting confused about what the indent was in this function as opposed to the last one I was working on.

The real mods. are trivial, arising from the fact that 'nix'es will write 1e-05 (say), while winblows will write 1e-005. This causes string comparisons that check the mesh file generation to fail. This, combined with the more pedantic behaviour of unlink() made pycad very fragile on windows. All fixed now.

Test on the 'nixes tonight.

May I ask for a hold off on the branch merge, Joel, till I get this stable on all platforms, and deal with the usual unused vars. that pop up from all the ifdefs?

  

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Revision 1904 - Directory Listing
Modified Wed Oct 22 08:27:56 2008 UTC (14 years, 5 months ago) by phornby

This now passes on windows. The main issue was that __del__ was being called when there was no open script or mesh file??? Could not fathom why, but added an extra test in __del__ to make sure the files were actually open before closing & unlinking.  It may be better to deal with the opening, writing, closing, os.system call, and final unlinking of the script file in getMeshHandler(). That way all manipulations are local, and only the mesh file need be handled in a remote piece of code like __del__.

Not tested on Altix or linux yet.... get to that tonight.

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Revision 1902 - Directory Listing
Modified Wed Oct 22 03:54:14 2008 UTC (14 years, 5 months ago) by artak

some bugs fixed in coresening methods

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Revision 1900 - Directory Listing
Modified Mon Oct 20 07:33:42 2008 UTC (14 years, 5 months ago) by phornby

Fake commit to sync with my windows machine.

Fix looks like like it worked on Dedbian. Thanks.

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Revision 1897 - Directory Listing
Modified Mon Oct 20 00:32:30 2008 UTC (14 years, 5 months ago) by jfenwick

Modified Data::toString() so it doesn't throw on DataEmpty.
Added setEscriptParamInt and getEscriptParamInt as free functions.
At the moment all they do is allow you to set the param TOO_MANY_LINES.
This is used to determine when printing a Data object will show you the 
points and when it will print a summary.

I've set the default value back to 80 lines.
If you need to see more lines use (in python):

setEscriptParamInt("TOO_MANY_LINES",80000)

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Revision 1896 - Directory Listing
Modified Sun Oct 19 23:16:21 2008 UTC (14 years, 5 months ago) by gross

small fixes.

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Revision 1895 - Directory Listing
Modified Sat Oct 18 11:06:38 2008 UTC (14 years, 5 months ago) by phornby

Remove the amalgamated test suite because it consumes too much resource on winblows

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Revision 1894 - Directory Listing
Modified Sat Oct 18 11:00:08 2008 UTC (14 years, 5 months ago) by phornby

Break run_linearPDEsOnFinley.py into 3 separate test modules to avoid crashes on winblows

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Revision 1893 - Directory Listing
Modified Fri Oct 17 09:59:39 2008 UTC (14 years, 5 months ago) by gross

brakets in SCAN error detection were missing.

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Revision 1892 - Directory Listing
Modified Fri Oct 17 00:55:59 2008 UTC (14 years, 5 months ago) by artak

memory leak is fixed

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Revision 1891 - Directory Listing
Modified Fri Oct 17 00:15:17 2008 UTC (14 years, 5 months ago) by artak

minor

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Revision 1890 - Directory Listing
Modified Fri Oct 17 00:14:22 2008 UTC (14 years, 5 months ago) by artak

Current version of AMG. check levels for stoping applies presmoothing, but not ready yet

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Revision 1887 - Directory Listing
Modified Wed Oct 15 03:26:25 2008 UTC (14 years, 5 months ago) by ksteube

Fixed two typos that stopped the test suite from running.

Also, gcc 4.3.2 issued several warnings not seen before:
ignoring the return value of fscanf and using the wrong format
with printf.

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Revision 1883 - Directory Listing
Modified Tue Oct 14 04:46:27 2008 UTC (14 years, 5 months ago) by artak

< changed to >=

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Revision 1882 - Directory Listing
Modified Tue Oct 14 04:39:02 2008 UTC (14 years, 5 months ago) by artak

minor

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Revision 1881 - Directory Listing
Modified Tue Oct 14 04:34:09 2008 UTC (14 years, 5 months ago) by artak

pattern multiply, binary operation are added

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Revision 1880 - Directory Listing
Modified Tue Oct 14 04:23:21 2008 UTC (14 years, 5 months ago) by caltinay

s/==/=/ in one more place in generate_dumps.py

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Revision 1878 - Directory Listing
Modified Tue Oct 14 03:39:13 2008 UTC (14 years, 5 months ago) by gross

new version of JacobiFree Newton GMRES + test added.

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Revision 1877 - Directory Listing
Modified Tue Oct 14 02:58:39 2008 UTC (14 years, 5 months ago) by ksteube

convection.py checkpointing uses mkdir/rmdir, and under MPI there
was a race condition.

mkdir needs to be run on only one CPU and then a barrier to prevent
working processors from using the directory before it exists.

Added methods domain.MPIBarrier and domain.onMasterProcessor() to
implement this technique.

A more general solution might be possible in the future.

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Revision 1876 - Directory Listing
Modified Mon Oct 13 10:19:17 2008 UTC (14 years, 5 months ago) by phornby

ftell lies on windows, so there is a win32 branch that reads the tag lines char by char.

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Revision 1875 - Directory Listing
Modified Mon Oct 13 10:15:04 2008 UTC (14 years, 5 months ago) by phornby

Add a TMPMEMREALLOC macro

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Revision 1874 - Directory Listing
Modified Mon Oct 13 05:15:55 2008 UTC (14 years, 5 months ago) by ksteube

num_equations -> numEquations

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Revision 1873 - Directory Listing
Modified Mon Oct 13 04:32:22 2008 UTC (14 years, 5 months ago) by jfenwick

Fixed a compile error under MPI.
Cleaned up a comment.

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Revision 1872 - Directory Listing
Modified Mon Oct 13 00:18:55 2008 UTC (14 years, 5 months ago) by jfenwick

Closing the moreshared branch

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Revision 1870 - Directory Listing
Modified Thu Oct 9 08:49:53 2008 UTC (14 years, 5 months ago) by gross

a bug in the nc test fixed (hopefully.)

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Revision 1869 - Directory Listing
Modified Thu Oct 9 08:34:40 2008 UTC (14 years, 5 months ago) by gross

typo fixed.

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Revision 1867 - Directory Listing
Modified Thu Oct 9 05:35:24 2008 UTC (14 years, 5 months ago) by ksteube

New method for unit testing to compare two saveVTK files.
Can detect same-ness even if the nodes are re-ordered.
To do: issue with contact elements in that identical
nodes confuses test for node re-ordering.

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Revision 1866 - Directory Listing
Modified Thu Oct 9 04:01:06 2008 UTC (14 years, 5 months ago) by ksteube

Repair to saveVTK similar to revision 1677 (there we got the number of offsets correct
and in this revision we got the number of types correct).
In case of MPI > 1 do not run saveDX tests since saveDX is not MPI parallel.

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Revision 1863 - Directory Listing
Modified Wed Oct 8 23:54:00 2008 UTC (14 years, 5 months ago) by ksteube

Improved test for off-screen rendering with pyvisi

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Revision 1862 - Directory Listing
Modified Wed Oct 8 06:30:50 2008 UTC (14 years, 5 months ago) by artak

Should work now

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Revision 1861 - Directory Listing
Modified Wed Oct 8 04:20:07 2008 UTC (14 years, 5 months ago) by gross

minres test are switched on

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Revision 1860 - Directory Listing
Modified Wed Oct 8 04:07:10 2008 UTC (14 years, 5 months ago) by artak

minor bug is fixed

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Revision 1859 - Directory Listing
Modified Wed Oct 8 03:03:37 2008 UTC (14 years, 5 months ago) by gross

first version of testing for transport solver.

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Revision 1857 - Directory Listing
Modified Tue Oct 7 23:58:44 2008 UTC (14 years, 5 months ago) by jfenwick

Updated doco to describe the behaviour of inf, sup and Lsup for cases 
where none of the tags in use in the domain have values.

It confused me when I was testing.

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Revision 1856 - Directory Listing
Modified Tue Oct 7 07:10:47 2008 UTC (14 years, 5 months ago) by gross

The NC dump tests work now with MPI.
In fact the old test did not exactly what it supposed to

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Revision 1855 - Directory Listing
Modified Tue Oct 7 05:25:30 2008 UTC (14 years, 5 months ago) by jfenwick

Modified Data::copyWithMask to have a less cryptic implementation.

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Revision 1854 - Directory Listing
Modified Tue Oct 7 01:38:55 2008 UTC (14 years, 5 months ago) by ksteube

local_NE0 typo

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Revision 1848 - Directory Listing
Modified Mon Oct 6 01:45:59 2008 UTC (14 years, 5 months ago) by jfenwick

Fixed copyright notice on linux_gcc_eg_options.py

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Revision 1847 - Directory Listing
Modified Fri Oct 3 06:45:34 2008 UTC (14 years, 5 months ago) by phornby

OK, these get the blahcpp.so names correct now.

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Revision 1846 - Directory Listing
Modified Fri Oct 3 06:42:35 2008 UTC (14 years, 5 months ago) by gross

bug fixed.

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Revision 1845 - Directory Listing
Modified Fri Oct 3 05:23:47 2008 UTC (14 years, 5 months ago) by gross

some naming problem for the installation of escriptcpp and finleycpp. Apparently this came is trough some mofifications in windows

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Revision 1844 - Directory Listing
Modified Fri Oct 3 05:19:23 2008 UTC (14 years, 5 months ago) by artak

This is prep for AMG solver. It is only a copy from RILU not actual AMG

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Revision 1843 - Directory Listing
Modified Fri Oct 3 04:21:29 2008 UTC (14 years, 5 months ago) by artak

forgot this one

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Revision 1842 - Directory Listing
Modified Fri Oct 3 04:18:26 2008 UTC (14 years, 5 months ago) by artak

Gauss-Seidel preconditioner now works for any number of sweeps. One need to specify parameter in options->sweep=2 (by default)

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Revision 1841 - Directory Listing
Modified Fri Oct 3 03:57:52 2008 UTC (14 years, 5 months ago) by gross

modification on LinearPDE class and a first version of Transport class

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Revision 1840 - Directory Listing
Modified Fri Oct 3 03:16:11 2008 UTC (14 years, 5 months ago) by phornby

These now install the correct .pyd files on windows.

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Revision 1839 - Directory Listing
Modified Fri Oct 3 02:06:00 2008 UTC (14 years, 5 months ago) by phornby

temporary fix to get run_tests working

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Revision 1838 - Directory Listing
Modified Fri Oct 3 02:05:01 2008 UTC (14 years, 5 months ago) by phornby

add 4 missing  ESCRIPT_DLL_API that prevented linking.

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Revision 1837 - Directory Listing
Modified Fri Oct 3 02:03:07 2008 UTC (14 years, 5 months ago) by phornby

Just getting run_tests going. I now recall that windows python will look for a .pyd
and not a .dll. So somehow we must install the python wrapper .dlls as a .pyds
I'll get to that later.

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Revision 1836 - Directory Listing
Modified Fri Oct 3 01:53:50 2008 UTC (14 years, 5 months ago) by phornby

do some code reuse to ease upkeep.

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Revision 1835 - Directory Listing
Modified Thu Oct 2 10:18:03 2008 UTC (14 years, 5 months ago) by phornby

There is no unistd.h on windows, as the name would imply.
I assume it is included for gethostname only.

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Revision 1834 - Directory Listing
Modified Thu Oct 2 09:48:45 2008 UTC (14 years, 5 months ago) by phornby

Remove a signed/unsigned comparison

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Revision 1833 - Directory Listing
Modified Thu Oct 2 09:47:24 2008 UTC (14 years, 5 months ago) by phornby

One cannot give a static function external linkage
(eigenvalues_and_eigenvectors and swapaxes).
I'm not even sure the external linkage is needed for inline functions.

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Revision 1832 - Directory Listing
Modified Thu Oct 2 09:33:48 2008 UTC (14 years, 5 months ago) by phornby

This one is closer to working.

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Revision 1831 - Directory Listing
Modified Thu Oct 2 08:55:16 2008 UTC (14 years, 5 months ago) by phornby

First cut at a windows option file. I probably does not work. This is a backup commit.

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Revision 1830 - Directory Listing
Modified Thu Oct 2 06:51:48 2008 UTC (14 years, 5 months ago) by ksteube

Tests using JoinFaces() and domain.write() will not work under MPI and must be disabled for num procs > 1

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Revision 1829 - Directory Listing
Modified Thu Oct 2 05:40:30 2008 UTC (14 years, 5 months ago) by ksteube

Adjusted tests for MPI.
Enabled two tests in run_inputOutput.py for order=2 after recent bugfix.

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Revision 1827 - Directory Listing
Modified Thu Oct 2 04:28:07 2008 UTC (14 years, 5 months ago) by ksteube

MPI parallelized dump/load for Constant and Tagged data.
run_escriptOnFinley.py runs hybrid MPI/OpenMP.

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Revision 1826 - Directory Listing
Modified Thu Oct 2 03:13:27 2008 UTC (14 years, 5 months ago) by phornby

Updated for new build system.
Still generating std::bad_alloc deep in VTK.

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Revision 1824 - Directory Listing
Modified Thu Oct 2 01:08:25 2008 UTC (14 years, 5 months ago) by ksteube

Updated tests for new Mesh_readGmsh.c of revision 1814

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Revision 1823 - Directory Listing
Modified Wed Oct 1 05:56:05 2008 UTC (14 years, 5 months ago) by artak

GS preconditioner now works for block_size 2 and 3 as well. Sweep parameter introdiced, but not working yet

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Revision 1819 - Directory Listing
Modified Tue Sep 30 05:58:06 2008 UTC (14 years, 5 months ago) by artak

Firs version of symmetric Gauss-Seidel preconditioner with coloring

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Revision 1818 - Directory Listing
Modified Tue Sep 30 04:09:13 2008 UTC (14 years, 5 months ago) by gross

chnaged the wrong line

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Revision 1817 - Directory Listing
Modified Tue Sep 30 04:03:40 2008 UTC (14 years, 5 months ago) by ksteube

Install runmodel.py into bin
Remove obsolete script esysXML.py

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Revision 1816 - Directory Listing
Modified Tue Sep 30 03:40:51 2008 UTC (14 years, 5 months ago) by gross

bug with MPI fixed (relevant for cases of n0 and n1 < num processors)

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Revision 1815 - Directory Listing
Modified Tue Sep 30 02:10:32 2008 UTC (14 years, 5 months ago) by gross

tools to generate dump files for relevant data and mesh types

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Revision 1814 - Directory Listing
Modified Tue Sep 30 00:21:21 2008 UTC (14 years, 5 months ago) by gross

Contact elements have the right tyoe now.

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Revision 1812 - Directory Listing
Modified Fri Sep 26 00:19:18 2008 UTC (14 years, 5 months ago) by ksteube

Re-ordered the methods in paso/src/SolverFCT_solve.c and resolved several compiler warnings

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Revision 1811 - Directory Listing
Modified Thu Sep 25 23:11:13 2008 UTC (14 years, 5 months ago) by ksteube

Copyright updated in all files

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Revision 1810 - Directory Listing
Modified Thu Sep 25 06:53:26 2008 UTC (14 years, 5 months ago) by ksteube

Updated copyright for a few remaining python files

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Revision 1809 - Directory Listing
Modified Thu Sep 25 06:43:44 2008 UTC (14 years, 5 months ago) by ksteube

Copyright updated in all python files

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Revision 1808 - Directory Listing
Modified Thu Sep 25 03:14:56 2008 UTC (14 years, 5 months ago) by jfenwick

Removed some commented out lines.
Modified DataExpanded to not throw when creating objects with zero 
samples.
Modified toString() to report "(data contains no samples)" rather than 
printing a blank line.
Modified DataExpanded::dump() and load so that they do not attempt so 
save/load the ids and data fields if the data object contains no 
samples.

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Revision 1807 - Directory Listing
Modified Thu Sep 25 01:04:51 2008 UTC (14 years, 5 months ago) by ksteube

The new MPI parallel ReadMesh is now the default after having passed
all tests both with and without MPI.
If you have been using ReadMesh you should notice no difference.
If you were using ReadMeshMPI then change to ReadMesh.

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Revision 1806 - Directory Listing
Modified Thu Sep 25 00:36:10 2008 UTC (14 years, 5 months ago) by ksteube

Cleaned up use of gethostname

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Revision 1805 - Directory Listing
Modified Wed Sep 24 23:39:00 2008 UTC (14 years, 5 months ago) by ksteube

Added python-level methods getMPISizeWorld() and getMPIRankWorld() for MPI process info.
Test suite run_inputOutput.py runs on any number of cores now, hybrid may still be a problem.

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Revision 1804 - Directory Listing
Modified Wed Sep 24 07:52:19 2008 UTC (14 years, 5 months ago) by gross

a robister version of the upwinding scheme

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Revision 1803 - Directory Listing
Modified Wed Sep 24 06:20:29 2008 UTC (14 years, 5 months ago) by jfenwick

All about making DataEmpty instances throw.
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Exposed getDim from AbstractDomain to python to fix bug.

Added isEmpty member to DataAbstract to allow it to throw is queries are 
made about a DataEmpty instance.


Added exceptions to DataAbstract, DataEmpty and Data to prevent calls 
being made against DataEmpty objects.
The following still work as expected on DataEmpty instances

copy, getDomain, getFunctionSpace, isEmpty, isExpanded, isProtected, 
isTagged, setprotection.

You can also call interpolate, however it should throw if you try to 
change FunctionSpaces.

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Revision 1802 - Directory Listing
Modified Tue Sep 23 01:03:29 2008 UTC (14 years, 5 months ago) by jfenwick

Added canTag methods to FunctionSpace and AbstractDomain (and its 
offspring).
This checks to see if the domain supports tags for the given type of 
function space.

Constructors for DataTagged now throw exceptions if you attempt to make 
a DataTagged with a FunctionSpace which does not support tags.
To allow the default constructor to work, NullDomain has a single 
functioncode which "supports" tagging.

Fixed a bug in DataTagged::toString and DataTypes::pointToString.

Added FunctionSpace::getListOfTagsSTL.

algorithm(DataTagged, BinaryFunction) in DataAlgorithm now only 
processes tags known to be in use.
This fixes mantis issue #0000186.

Added comment to Data.h intro warning about holding references if the 
underlying DataAbstract changes.

_python_ unit tests have been updated to test TaggedData with invalid 
FunctionSpaces and to give the correct answers to Lsup etc.

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Revision 1801 - Directory Listing
Modified Fri Sep 19 01:37:09 2008 UTC (14 years, 6 months ago) by ksteube

Fixed serialization of I/O for MPI...code didn't compile without MPI

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Revision 1800 - Directory Listing
Modified Thu Sep 18 05:28:20 2008 UTC (14 years, 6 months ago) by ksteube

Serialized parallel I/O when writing mesh or data to NetCDF file on multiple MPI processors.
Added domain method getMPIComm() to complement getMPISize() and getMPIRank().

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Revision 1799 - Directory Listing
Modified Wed Sep 17 06:33:18 2008 UTC (14 years, 6 months ago) by jfenwick

Added Data::copySelf() [Note: this is exposed as copy() in python].
This method returns a pointer to a deep copy of the target.
There are c++ tests but no python tests for this yet.

All DataAbstracts now have a deepCopy() which simplifies the 
implementation of the compy methods.

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Revision 1798 - Directory Listing
Modified Wed Sep 17 06:21:12 2008 UTC (14 years, 6 months ago) by gross

Fixes for the JacobeanFreeNewton scheme. Still needs to be tested under OPENMP but runs under MPI.

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Revision 1797 - Directory Listing
Modified Wed Sep 17 03:39:34 2008 UTC (14 years, 6 months ago) by jfenwick

Putting MINRES.c back after it went missing.

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Revision 1796 - Directory Listing
Modified Wed Sep 17 01:45:46 2008 UTC (14 years, 6 months ago) by jfenwick

Merged noarrayview branch onto trunk.

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Revision 1792 - Directory Listing
Modified Tue Sep 16 08:28:25 2008 UTC (14 years, 6 months ago) by gross

bug fixed: obviously in rather than NULL should be returned

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Revision 1791 - Directory Listing
Modified Tue Sep 16 08:21:57 2008 UTC (14 years, 6 months ago) by phornby

I know this ia a no no, but it was necessary to get scons run_tests, going on my debian box,
even with usepedanitc off.

My g++ version is 4.3.1, that may explain the different behavour.

#include'd cstdlib. This checkin is to see if this hurts the other ports.

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Revision 1790 - Directory Listing
Modified Tue Sep 16 07:45:38 2008 UTC (14 years, 6 months ago) by gross

test is obsolet

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Revision 1789 - Directory Listing
Modified Mon Sep 15 08:34:44 2008 UTC (14 years, 6 months ago) by phornby

Near line 288 of SConstruct.

Fixed the HAVE_GETHOSTNAME environment variable setting.
The the test had a "not" that should not be there,
and the wrong env was being Append()'ed.

On linux, this resulted in HAVE_GETHOSTNAME not being -D'ed.

the strcpy at line 78 of 
escript/src/Utils.cpp

was flagged by gcc as an error because
strcpy is not declared on the compilation branch
that compiles if HAVE_GETHOSTNAME is not set.
I have not fixed this.

Also, the hostname buffer is only 64 char long.
Why limit the length of the hostname,
admitting buffer overflow, in a .cpp file?
Why use strcpy in C++?

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Revision 1788 - Directory Listing
Modified Mon Sep 15 02:20:20 2008 UTC (14 years, 6 months ago) by gross

levelset in the way laurent did it.

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Revision 1787 - Directory Listing
Modified Mon Sep 15 01:36:34 2008 UTC (14 years, 6 months ago) by artak

MINRES solver is added to escript. Additional 16 tests are added to run_simplesolve for MINRES and TFQMR solvers

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Revision 1785 - Directory Listing
Modified Thu Sep 11 23:35:42 2008 UTC (14 years, 6 months ago) by ksteube

Config variables such as boost_lib_path and netcdf_lib_path are stored in
the wrapper script bin/finleypython so the user gets the proper environment
automatically

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Revision 1780 - Directory Listing
Modified Thu Sep 11 04:42:15 2008 UTC (14 years, 6 months ago) by artak

Now works with block size 2 and 3 as well

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Revision 1778 - Directory Listing
Modified Tue Sep 9 07:46:02 2008 UTC (14 years, 6 months ago) by gross

memry leak fixed

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Revision 1777 - Directory Listing
Modified Tue Sep 9 06:39:37 2008 UTC (14 years, 6 months ago) by ksteube

Implemented Lutz fix for MPI mesh dump/load using NetCDF

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Revision 1776 - Directory Listing
Modified Tue Sep 9 06:03:53 2008 UTC (14 years, 6 months ago) by ksteube

Cleared away some debugging prints

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Revision 1774 - Directory Listing
Modified Tue Sep 9 03:50:45 2008 UTC (14 years, 6 months ago) by gross

bug: unitialized values

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Revision 1772 - Directory Listing
Modified Tue Sep 9 00:18:49 2008 UTC (14 years, 6 months ago) by ksteube

Added tests for reading a finley mesh and comparing it to a newly-created
mesh of the same type

Moved my mesh comparison function to be a class method

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Revision 1771 - Directory Listing
Modified Mon Sep 8 22:47:55 2008 UTC (14 years, 6 months ago) by ksteube

Removed failing test until we fix a bug.
Fixed several compiler warnings.

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Revision 1770 - Directory Listing
Modified Mon Sep 8 06:58:47 2008 UTC (14 years, 6 months ago) by ksteube

Detects an array reference out of bounds when running run_inputOutput.py

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Revision 1769 - Directory Listing
Modified Mon Sep 8 04:34:33 2008 UTC (14 years, 6 months ago) by ksteube

test commit

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Revision 1768 - Directory Listing
Modified Mon Sep 8 04:32:19 2008 UTC (14 years, 6 months ago) by ksteube

ld_lib_path had a path listed twice...removed one

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Revision 1767 - Directory Listing
Modified Mon Sep 8 02:53:50 2008 UTC (14 years, 6 months ago) by gross

print statements removed

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Revision 1766 - Directory Listing
Modified Mon Sep 8 02:51:14 2008 UTC (14 years, 6 months ago) by gross

code formatting

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Revision 1765 - Directory Listing
Modified Mon Sep 8 02:49:57 2008 UTC (14 years, 6 months ago) by gross

some fixes for the case of empty processor

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Revision 1764 - Directory Listing
Modified Mon Sep 8 02:48:26 2008 UTC (14 years, 6 months ago) by gross

type for the non mpi case fixed.

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Revision 1763 - Directory Listing
Modified Mon Sep 8 02:47:55 2008 UTC (14 years, 6 months ago) by gross

more code formatting

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Revision 1762 - Directory Listing
Modified Mon Sep 8 02:42:39 2008 UTC (14 years, 6 months ago) by gross

some formatting

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Revision 1761 - Directory Listing
Modified Mon Sep 8 02:36:47 2008 UTC (14 years, 6 months ago) by gross

using MPI_Init_thread rather than MPI_Init to clarify the usage with mpi

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Revision 1760 - Directory Listing
Modified Mon Sep 8 02:35:56 2008 UTC (14 years, 6 months ago) by gross

some renaming of variables to clarify what is going on

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Revision 1759 - Directory Listing
Modified Mon Sep 8 02:31:22 2008 UTC (14 years, 6 months ago) by gross

MPI version plus some openmp optimization

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Revision 1758 - Directory Listing
Modified Mon Sep 8 02:29:33 2008 UTC (14 years, 6 months ago) by gross

uses now memcpy rather than for loop

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Revision 1757 - Directory Listing
Modified Mon Sep 8 02:28:38 2008 UTC (14 years, 6 months ago) by gross

no ifdef _OPENMP required

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Revision 1756 - Directory Listing
Modified Mon Sep 8 01:45:46 2008 UTC (14 years, 6 months ago) by ksteube

First version of a wrapper script that sets LD_LIBRARY_PATH and PYTHONPATH

Not yet ready for general use

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Revision 1755 - Directory Listing
Modified Mon Sep 8 01:34:40 2008 UTC (14 years, 6 months ago) by ksteube

Added new field to NetCDF dump of mesh

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Revision 1754 - Directory Listing
Modified Sun Sep 7 22:07:26 2008 UTC (14 years, 6 months ago) by ksteube

Added new test suite run_inputOutput.py to systematically test I/O.
Can determine if two domains are same with Fourier analysis.
Added new method getNumDataPointsGlobal to return number of DPs of a distributed mesh.
Reading of tags in ReadMeshMPI failed occasionally, should be more robust now.

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Revision 1753 - Directory Listing
Modified Sun Sep 7 22:01:23 2008 UTC (14 years, 6 months ago) by ksteube

Test suite fails due to missing arg in call to Finley_Mesh_createMappings.
Added NULL arg, but still need to find proper fix as loadMesh does not work.

Adjusted SConstruct to delete pythonMPI if not compiled for MPI.

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Revision 1750 - Directory Listing
Modified Wed Sep 3 23:09:29 2008 UTC (14 years, 6 months ago) by gross

small bug fixed

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Revision 1749 - Directory Listing
Modified Wed Sep 3 07:25:01 2008 UTC (14 years, 6 months ago) by gross

fixes a problem with the saveVTK writing under mpi

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Revision 1748 - Directory Listing
Modified Wed Sep 3 06:10:39 2008 UTC (14 years, 6 months ago) by ksteube

MPI parallelism for Data().dump and load.  Use multiple NetCDF
files, one file per MPI process

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Revision 1746 - Directory Listing
Modified Wed Sep 3 01:24:16 2008 UTC (14 years, 6 months ago) by lgraham

Corrected plus (+) sign in Equation (2.54) for elastic tensor, and (2.60) for von Mises stress.

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Revision 1745 - Directory Listing
Modified Wed Sep 3 00:41:24 2008 UTC (14 years, 6 months ago) by ksteube

MPI mesh_read was crashing if tags not present

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Revision 1744 - Directory Listing
Modified Tue Sep 2 07:39:18 2008 UTC (14 years, 6 months ago) by ksteube

Can now read and MPI distribute a finley mesh including the tags.

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Revision 1743 - Directory Listing
Modified Tue Sep 2 00:54:05 2008 UTC (14 years, 6 months ago) by ksteube

Avoid crash due to zero-length writes in MPI_File_write_ordered.
Write a space instead of empty string.
The space will be at the end of a line and cause no problem.

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Revision 1742 - Directory Listing
Modified Mon Sep 1 05:55:00 2008 UTC (14 years, 6 months ago) by gross

tests for VTK writer rec9 and Hex27 added

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Revision 1741 - Directory Listing
Modified Mon Sep 1 04:06:41 2008 UTC (14 years, 6 months ago) by gross

VTK writer supports HEX27 and REC9 now.

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Revision 1740 - Directory Listing
Modified Fri Aug 29 06:23:11 2008 UTC (14 years, 6 months ago) by gross

and some fixes for the GMSH reader

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Revision 1739 - Directory Listing
Modified Fri Aug 29 06:19:53 2008 UTC (14 years, 6 months ago) by gross

Fix in the MPI mesh reader: Owner need to be set.

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Revision 1738 - Directory Listing
Modified Fri Aug 29 05:06:45 2008 UTC (14 years, 6 months ago) by gross

some changes improving the robustness for MPI if the elements/processor is small

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Revision 1737 - Directory Listing
Modified Fri Aug 29 03:01:29 2008 UTC (14 years, 6 months ago) by gross

the MaskFromBoundaryTag function didn't make much sense. The argument function_space is replaced by domain.

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Revision 1736 - Directory Listing
Modified Fri Aug 29 02:23:16 2008 UTC (14 years, 6 months ago) by gross

This fixes a problem which is typically arising when using reduced order
with MPI and a "small" number of elements per processor. In this case it
can happen that the couple matrix is not using all entries sent to the
processor. The old implementations assumed that the indices will cover
the entire input. This assumption has been removed.

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Revision 1735 - Directory Listing
Modified Fri Aug 29 00:18:26 2008 UTC (14 years, 6 months ago) by gross

This fixes a bug in the callculation of communication tables in
particular for the data to be send away. The problem was that the
previously used method based on the idea to use the elements stored on a
processor to decide what to send away is not suitable for the reduced
DOF. Now each processor sends a list of the DOFs it is expecting to its
naighbours. 

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Revision 1733 - Directory Listing
Modified Thu Aug 28 01:46:07 2008 UTC (14 years, 6 months ago) by gross

bug fix: if the numer of elements to be generated suppose to be zero
still face elements and nodes are generated. this is fixed now.

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Revision 1732 - Directory Listing
Modified Wed Aug 27 05:47:03 2008 UTC (14 years, 6 months ago) by ksteube

MPI read of finley mesh file working except for a bug related to mesh_prepare

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Revision 1731 - Directory Listing
Modified Wed Aug 27 03:11:24 2008 UTC (14 years, 6 months ago) by ksteube

Updated "assumed modules" in scons/cognac_options.py

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Revision 1729 - Directory Listing
Modified Tue Aug 26 06:48:40 2008 UTC (14 years, 6 months ago) by ksteube

Added prefix/lib go LD_LIBRARY_PATH

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Revision 1728 - Directory Listing
Modified Tue Aug 26 05:15:32 2008 UTC (14 years, 6 months ago) by ksteube

Minor update to configuration for cognac

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Revision 1727 - Directory Listing
Modified Tue Aug 26 04:19:27 2008 UTC (14 years, 6 months ago) by artak

numarray.dot in MAC has a bug, so if it is possible use numpy.dot instead in Point.isColoacted()

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Revision 1725 - Directory Listing
Modified Tue Aug 26 03:31:49 2008 UTC (14 years, 6 months ago) by ksteube

MPI read of .fly mesh file: fixed bug in message size while fanning out elements

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Revision 1723 - Directory Listing
Modified Fri Aug 22 04:24:19 2008 UTC (14 years, 7 months ago) by gross

some unnecessary code removed.

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Revision 1722 - Directory Listing
Modified Fri Aug 22 04:20:30 2008 UTC (14 years, 7 months ago) by gross

The CSR matrix patters handed ober to ParMetis may not containn the main diagonal entry. 
This revisison is fixing the problem.

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Revision 1720 - Directory Listing
Modified Fri Aug 22 00:24:35 2008 UTC (14 years, 7 months ago) by gross

PARAMETIS macro renamed to USE_PARAMETIS as set by scons

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Revision 1719 - Directory Listing
Modified Thu Aug 21 06:24:29 2008 UTC (14 years, 7 months ago) by gross

robust function to normalize data object added

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Revision 1718 - Directory Listing
Modified Thu Aug 21 05:50:11 2008 UTC (14 years, 7 months ago) by gross

method returning reference id added to FunctionSpace class

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Revision 1717 - Directory Listing
Modified Thu Aug 21 05:24:35 2008 UTC (14 years, 7 months ago) by gross

function to calculate value closest to given value added

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Revision 1716 - Directory Listing
Modified Thu Aug 21 05:03:49 2008 UTC (14 years, 7 months ago) by gross

getListOfTags method added to FunctionSpace class

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Revision 1713 - Directory Listing
Modified Wed Aug 20 07:03:45 2008 UTC (14 years, 7 months ago) by ksteube

MPI read of mesh.fly: reduced memory requirements

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Revision 1711 - Directory Listing
Modified Tue Aug 19 03:37:25 2008 UTC (14 years, 7 months ago) by artak

minor

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Revision 1709 - Directory Listing
Modified Fri Aug 15 01:09:45 2008 UTC (14 years, 7 months ago) by lgraham

added separate section for Einstein notation

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Revision 1708 - Directory Listing
Modified Thu Aug 14 22:42:24 2008 UTC (14 years, 7 months ago) by ksteube

Added newline at end of file TFQMR.c because it is an error for icc.
Turned useumfpack off by default.

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Revision 1707 - Directory Listing
Modified Thu Aug 14 06:38:14 2008 UTC (14 years, 7 months ago) by ksteube

Fixed nightly tests for savanna (no longer running in PBS cause can't
compile on compute node).
Modified domain.print_mesh_info() to tell how many elements are owned by
a node and how many are in the overlap.
Instrumented the preconditioner step.

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Revision 1706 - Directory Listing
Modified Thu Aug 14 06:09:50 2008 UTC (14 years, 7 months ago) by artak

some problems with C90 compiler fixed

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Revision 1705 - Directory Listing
Modified Thu Aug 14 05:56:40 2008 UTC (14 years, 7 months ago) by ksteube

Branch scons-dev is hereby closed.
Some parts of scons scripts have been re-written.

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Revision 1703 - Directory Listing
Modified Thu Aug 14 05:34:25 2008 UTC (14 years, 7 months ago) by artak

TFQMR solver is added to PASO solver. It is not parallelised yet.

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Revision 1702 - Directory Listing
Modified Thu Aug 14 04:10:23 2008 UTC (14 years, 7 months ago) by lgraham

added in latex file for models chapter

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Revision 1701 - Directory Listing
Modified Thu Aug 14 04:05:15 2008 UTC (14 years, 7 months ago) by lgraham

comments for rev 1700.
Ran through spell checker for tutorial chapters.
Added in a tutorial chapter introducing the level set method with the Rayleigh-Taylor instability problem. Need to add python code at a later date for level set class.
Started to write up a chapter on model classes, e.g. StokesProblemCartesian, LevelSet, DurckerPrager, and TemperatureCartesian etc.
  

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Revision 1700 - Directory Listing
Modified Thu Aug 14 03:35:46 2008 UTC (14 years, 7 months ago) by lgraham

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Revision 1695 - Directory Listing
Modified Fri Aug 8 04:28:28 2008 UTC (14 years, 7 months ago) by artak

test_NoPDE_vector_variable is changed to avoid 0/0 division

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Revision 1694 - Directory Listing
Modified Fri Aug 8 04:27:46 2008 UTC (14 years, 7 months ago) by artak

test_NoPDE_vector_variable is changed to avoid 0/0 division

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Revision 1693 - Directory Listing
Modified Fri Aug 8 04:22:58 2008 UTC (14 years, 7 months ago) by jfenwick

Modified toString() on Data objects.
str(x) or print x will now print a summary of the data rather than all 
the points if the output would take more than 80 lines.

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Revision 1692 - Directory Listing
Modified Thu Aug 7 23:05:37 2008 UTC (14 years, 7 months ago) by artak

working configuration

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Revision 1690 - Directory Listing
Modified Thu Aug 7 01:12:38 2008 UTC (14 years, 7 months ago) by jfenwick

Added Configuration for shake63 (Joel-Box)

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Revision 1679 - Directory Listing
Modified Wed Jul 30 00:09:12 2008 UTC (14 years, 7 months ago) by artak

now convection works for other solvers as well, besides PCG.

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Revision 1677 - Directory Listing
Modified Mon Jul 28 06:36:19 2008 UTC (14 years, 7 months ago) by gross

bug in the MPI version of saveVTK fixed

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Revision 1674 - Directory Listing
Modified Fri Jul 25 00:47:16 2008 UTC (14 years, 7 months ago) by artak

Command line options (-e NE and -s solver ) are added

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Revision 1673 - Directory Listing
Modified Thu Jul 24 22:28:50 2008 UTC (14 years, 7 months ago) by gross

more algorithms for level set

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Revision 1670 - Directory Listing
Modified Thu Jul 24 04:30:43 2008 UTC (14 years, 7 months ago) by ksteube

Fix variable declaration to compile under MPI

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Revision 1669 - Directory Listing
Modified Thu Jul 24 01:10:04 2008 UTC (14 years, 7 months ago) by gross

A problem with VTK writer and MPI is fixed: Apparently MPI_file_open does not "delete" the file  which has the effect that 
if less date are written into the file as the file contained when opened bits of the previous containt remains in the file. This problem is fixed
by deleting the file if it exists before open it with MPI. The additional function Paso_existFile needed to be added as there is no standart C 
function to test the exists of a file.

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Revision 1666 - Directory Listing
Modified Wed Jul 23 04:44:30 2008 UTC (14 years, 8 months ago) by ksteube

Removed unused software bruce

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Revision 1665 - Directory Listing
Modified Wed Jul 23 03:23:03 2008 UTC (14 years, 8 months ago) by gross

bug in the MPI version of saveVTK fixed

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Revision 1664 - Directory Listing
Modified Tue Jul 22 03:41:38 2008 UTC (14 years, 8 months ago) by ksteube

Install() on Mac OS was naming shared libs file.dylib...not OK for our
libraries for python calling C++ (escriptcpp.so and finleycpp.so).
This is because python's dlopen() calls only look for .so files.

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Revision 1663 - Directory Listing
Modified Tue Jul 22 02:56:21 2008 UTC (14 years, 8 months ago) by artak

-pedantic_errors commented for compiling in MAC OS X

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Revision 1662 - Directory Listing
Modified Tue Jul 22 01:49:21 2008 UTC (14 years, 8 months ago) by ksteube

Ran a simple Escript program on Mac OS Darwin. Still much to do.

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Revision 1661 - Directory Listing
Modified Mon Jul 21 22:08:27 2008 UTC (14 years, 8 months ago) by gross

some improvements on level set

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Revision 1660 - Directory Listing
Modified Mon Jul 21 03:23:46 2008 UTC (14 years, 8 months ago) by ksteube

Some variables were not declared as a result of recent cleanup

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Revision 1659 - Directory Listing
Modified Fri Jul 18 02:28:13 2008 UTC (14 years, 8 months ago) by gross

some first version of a robust level set

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Revision 1651 - Directory Listing
Modified Tue Jul 15 09:33:48 2008 UTC (14 years, 8 months ago) by phornby

Altix:

remove remaining warnings involving printf's and functions not returning values.
Only warnings left are in boost, and warnings that optimisation is turned off on big files.

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Revision 1650 - Directory Listing
Modified Tue Jul 15 08:58:22 2008 UTC (14 years, 8 months ago) by phornby

more care with m_t and diagS needed in the pragmas.

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Revision 1649 - Directory Listing
Modified Tue Jul 15 08:41:02 2008 UTC (14 years, 8 months ago) by phornby

Make operator=() on exception non-virtual. Should silence the Altix compiler.
However, if an exception is cast to another parent type, and
operator=() is called when the exception so cast is an l-value in the assignment,
an "incomplete" assignment will occur, copying only the parent class members of the 
l-value in the assignmnet.

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Revision 1648 - Directory Listing
Modified Tue Jul 15 08:01:03 2008 UTC (14 years, 8 months ago) by phornby

Remove -c99 option on compiler, no longer needed.

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Revision 1646 - Directory Listing
Modified Tue Jul 15 05:27:39 2008 UTC (14 years, 8 months ago) by phornby

Unused vars due to the #if 0's in the code.

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Revision 1645 - Directory Listing
Modified Tue Jul 15 05:26:38 2008 UTC (14 years, 8 months ago) by phornby

unused vars.

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Revision 1644 - Directory Listing
Modified Tue Jul 15 05:25:32 2008 UTC (14 years, 8 months ago) by phornby

tmp_str was unused var on windows.

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Revision 1643 - Directory Listing
Modified Tue Jul 15 05:24:14 2008 UTC (14 years, 8 months ago) by phornby

Missing include file. A

ssume that a NULL F passed to Paso_FunctionCall() is an error.

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Revision 1642 - Directory Listing
Modified Tue Jul 15 05:21:57 2008 UTC (14 years, 8 months ago) by phornby

make the 1st arg of the ...._call(const double alpha,....
consistent between the .h and .c file. The const is not really needed.

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Revision 1639 - Directory Listing
Modified Mon Jul 14 08:55:25 2008 UTC (14 years, 8 months ago) by gross

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Revision 1638 - Directory Listing
Modified Mon Jul 14 05:47:20 2008 UTC (14 years, 8 months ago) by phornby

Fake checkin to see if my identity is correct now.

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Revision 1637 - Directory Listing
Modified Mon Jul 14 05:34:59 2008 UTC (14 years, 8 months ago) by ksteube

Resolved some compiler warnings
Changed blocktimer to not use strdup, intead malloc and strcpy

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Revision 1636 - Directory Listing
Modified Mon Jul 14 03:40:22 2008 UTC (14 years, 8 months ago) by trankine

somehow, this was not correctly merged from the branch??

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Revision 1635 - Directory Listing
Modified Sat Jul 12 10:00:50 2008 UTC (14 years, 8 months ago) by phornby

Last commit hung. Trying to recover. Also, remove excessive extern C {} I introduced

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Revision 1634 - Directory Listing
Modified Sat Jul 12 09:08:33 2008 UTC (14 years, 8 months ago) by phornby

linux_gcc_eg_options.py:
remove the std99 option, it is no longer needed as the code compiles without
C 1999 extension (need for these extensions elinminated in windows port).
Turn on all warnings except unknown pragmas. Should catch a lot of stuff.

SConstruct:
Impassioned plea

system_dep.h:
Add the standard incantation for dealing with const declarations
in C code called from C and C++

blocktimer:
Get the calling interface right for C code called from C and C++
and use __const as defined in system_dep.h
(Should be re-factored into compiler_dep.h file).

MeshAdapterFactory.cpp:
Since we have (effectively) no control over netCDF policy,
cast const char *'s to char *'s

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Revision 1633 - Directory Listing
Modified Sat Jul 12 07:45:17 2008 UTC (14 years, 8 months ago) by trankine

Turn on netcdf in windows build. No new errors generated.... remarkable.

The correctly configured netCDF source and windows build config.
that matches enthought python25/vtk/PmdPyRT for windows, can be
obtained from

https://cgsrv1.arrc.csiro.au/subversion/swframeutils/thirdParty/netcdf/trunk

username & password needed. If you have access to our twiki, no new username is required,
but authorisation to read the repository will be required.

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Revision 1632 - Directory Listing
Modified Sat Jul 12 07:17:50 2008 UTC (14 years, 8 months ago) by trankine

compiling with netcdf on revealed an unused var.

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Revision 1631 - Directory Listing
Modified Sat Jul 12 07:16:39 2008 UTC (14 years, 8 months ago) by trankine

eliminate unused var argument of catch statement.

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Revision 1630 - Directory Listing
Modified Sat Jul 12 07:15:32 2008 UTC (14 years, 8 months ago) by trankine

Merge resulted in double declaration.

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Revision 1629 - Directory Listing
Modified Sat Jul 12 05:16:32 2008 UTC (14 years, 8 months ago) by trankine

This is a fake checkin to notify that the trunk passes its tests on windows except for known problems in pycad.

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Revision 1628 - Directory Listing
Modified Fri Jul 11 13:12:46 2008 UTC (14 years, 8 months ago) by phornby

Merge in /branches/windows_from_1456_trunk_1620_merged_in branch.

You will find a preserved pre-merge trunk in tags under tags/trunk_at_1625.
That will be useful for diffing & checking on my stupidity.

Here is a list of the conflicts and their resolution at this
point in time.


=================================================================================
(LLWS == looks like white space).

finley/src/Assemble_addToSystemMatrix.c - resolve to branch - unused var. may be wrong.....
finley/src/CPPAdapter/SystemMatrixAdapter.cpp - resolve to branch - LLWS
finley/src/CPPAdapter/MeshAdapter.cpp - resolve to branch - LLWS
paso/src/PCG.c - resolve to branch - unused var fixes.
paso/src/SolverFCT.c - resolve to branch - LLWS
paso/src/FGMRES.c - resolve to branch - LLWS
paso/src/Common.h - resolve to trunk version. It's omp.h's include... not sure it's needed,
but for the sake of saftey.....
paso/src/Functions.c - resolve to branch version, indentation/tab removal and return error
on bad unimplemented Paso_FunctionCall.
paso/src/SolverFCT_solve.c - resolve to branch version, unused vars
paso/src/SparseMatrix_MatrixVector.c - resolve to branch version, unused vars.
escript/src/Utils.cpp - resloved to branch, needs WinSock2.h
escript/src/DataExpanded.cpp - resolved to branch version - LLWS
escript/src/DataFactory.cpp - resolve to branch version
=================================================================================

This currently passes tests on linux (debian), but is not checked on windows or Altix yet.

This checkin is to make a trunk I can check out for windows to do tests on it.

Known outstanding problem is in the operator=() method of exceptions
causing warning messages on the intel compilers.

May the God of doughnuts have mercy on my soul.

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Revision 1625 - Directory Listing
Modified Thu Jul 10 23:55:31 2008 UTC (14 years, 8 months ago) by gross

interpolate accepts now float and numarray as argument

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Revision 1620 - Directory Listing
Modified Fri Jun 27 02:30:18 2008 UTC (14 years, 8 months ago) by ksteube

Included more MPI configuration options on Savanna

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Revision 1619 - Directory Listing
Modified Wed Jun 25 01:18:36 2008 UTC (14 years, 8 months ago) by ksteube

Documentation nightly builds now working again

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Revision 1618 - Directory Listing
Modified Tue Jun 24 01:16:40 2008 UTC (14 years, 8 months ago) by ksteube

Trying to get documentation builds going again after reinstalling my desktop OS

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Revision 1579 - Directory Listing
Modified Mon Jun 2 08:48:36 2008 UTC (14 years, 9 months ago) by ksteube

Fix typo in PCG.c
Improvement of build options for Savanna, ac.apac.edu, shake71

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Revision 1574 - Directory Listing
Modified Mon May 26 13:59:58 2008 UTC (14 years, 9 months ago) by gross

some modifications that may help to speed up compilation

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Revision 1573 - Directory Listing
Modified Mon May 26 13:01:31 2008 UTC (14 years, 9 months ago) by gross

some modifications to run less tests

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Revision 1572 - Directory Listing
Modified Mon May 26 12:50:56 2008 UTC (14 years, 9 months ago) by gross

some openmp problems in PCG fixed.

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Revision 1571 - Directory Listing
Modified Sat May 24 22:28:33 2008 UTC (14 years, 9 months ago) by gross

fixes for OPenmp but PCG still does not work under openmp

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Revision 1570 - Directory Listing
Modified Sat May 24 21:31:04 2008 UTC (14 years, 9 months ago) by gross

modifications to PCG to support dynamic scheduling

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Revision 1569 - Directory Listing
Modified Sat May 24 04:51:38 2008 UTC (14 years, 9 months ago) by ksteube

Config for new installation at APAC with offscreen rendering

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Revision 1568 - Directory Listing
Modified Sat May 24 03:15:08 2008 UTC (14 years, 9 months ago) by ksteube

Some testing on ac.apac.edu.au, more work needed
New pyvisi example offscreen.py for offscreen rendering

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Revision 1567 - Directory Listing
Modified Thu May 22 22:52:41 2008 UTC (14 years, 10 months ago) by ksteube

scons all_tests passes on Savanna with OMP=1 and OMP=4.
New boost for Savanna.
A few more cases of #s -> %s.

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Revision 1566 - Directory Listing
Modified Thu May 22 12:07:35 2008 UTC (14 years, 10 months ago) by gross

some changes to chunk test

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Revision 1565 - Directory Listing
Modified Thu May 22 10:19:47 2008 UTC (14 years, 10 months ago) by gross

some small fixes for openmp

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Revision 1564 - Directory Listing
Modified Thu May 22 09:31:33 2008 UTC (14 years, 10 months ago) by gross

some openmp dynamic scheduling for MVM.

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Revision 1563 - Directory Listing
Modified Wed May 21 15:27:34 2008 UTC (14 years, 10 months ago) by gross

Some stuff added to make the FCT solver work with Dirichlet Boundary conditions for MPI. 
and a memory leak in the coupler fixed.

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Revision 1562 - Directory Listing
Modified Wed May 21 13:04:40 2008 UTC (14 years, 10 months ago) by gross

The algebraic upwinding with MPI. The case of boundary constraint needs still some attention. 

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Revision 1561 - Directory Listing
Modified Wed May 21 06:58:52 2008 UTC (14 years, 10 months ago) by ksteube

Added python method printParallelThreadCounts() to tell how many MPI CPUs and OpenMP threads we are using (for testing hybrid runs)

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Revision 1560 - Directory Listing
Modified Wed May 21 05:55:30 2008 UTC (14 years, 10 months ago) by ksteube

Improvements to Savanna configuration

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Revision 1559 - Directory Listing
Modified Wed May 21 04:27:15 2008 UTC (14 years, 10 months ago) by ksteube

Compiles and runs on Savanna (hostname service0)

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Revision 1557 - Directory Listing
Modified Mon May 19 04:44:27 2008 UTC (14 years, 10 months ago) by artak

some changes to ArithmenticTuple class

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Revision 1556 - Directory Listing
Modified Mon May 12 00:54:58 2008 UTC (14 years, 10 months ago) by gross

Modification to allow mixed mode execution. 
In order to keep the code portable accross platform all MPI calls within
parallel regions have been moved. 

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Revision 1555 - Directory Listing
Modified Mon May 12 00:32:08 2008 UTC (14 years, 10 months ago) by ksteube

Adjusted vantage point

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Revision 1554 - Directory Listing
Modified Fri May 9 02:50:49 2008 UTC (14 years, 10 months ago) by artak

minor changes

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Revision 1553 - Directory Listing
Modified Thu May 8 09:38:07 2008 UTC (14 years, 10 months ago) by gross

some small bugs fixed to get MPI going with the modification. MPI version of BiCGStab added.

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Revision 1552 - Directory Listing
Modified Thu May 8 08:52:41 2008 UTC (14 years, 10 months ago) by gross

some changes to make the implementatiopn of a upwind MPI version easier

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Revision 1551 - Directory Listing
Modified Wed May 7 23:11:44 2008 UTC (14 years, 10 months ago) by artak

RILU canged to ILU0 to fix today's test failure

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Revision 1550 - Directory Listing
Modified Wed May 7 02:22:57 2008 UTC (14 years, 10 months ago) by artak

coupled method is added, but it's still not working

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Revision 1543 - Directory Listing
Modified Wed Apr 30 23:21:27 2008 UTC (14 years, 10 months ago) by ksteube

Create an MPEG movie from the state.N.vtu files of convection.py using pyvisi

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Revision 1542 - Directory Listing
Modified Wed Apr 30 03:40:15 2008 UTC (14 years, 10 months ago) by artak

#s and #e replaced by %s and %e 

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Revision 1541 - Directory Listing
Modified Wed Apr 30 02:05:29 2008 UTC (14 years, 10 months ago) by ksteube

Changed #s to %s in print

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Revision 1527 - Directory Listing
Modified Tue Apr 29 00:52:01 2008 UTC (14 years, 10 months ago) by ksteube

Changed from printing doubles with %s to %e

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Revision 1524 - Directory Listing
Modified Wed Apr 23 05:31:54 2008 UTC (14 years, 11 months ago) by phornby

replace

abs -> fabs.

Shoot me an e-mail if this is the wrong thing.

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Revision 1519 - Directory Listing
Modified Tue Apr 22 03:45:36 2008 UTC (14 years, 11 months ago) by artak

Initial version of NewtonGMRES solver. Still to do: 1. The atol and rtol define globally. 2. Decide about N 

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Revision 1518 - Directory Listing
Modified Fri Apr 18 05:47:52 2008 UTC (14 years, 11 months ago) by artak

Test are created for MINRES and TFQMR methods

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Revision 1517 - Directory Listing
Modified Fri Apr 18 02:36:37 2008 UTC (14 years, 11 months ago) by artak

stopping criteriums are combined for GMRES,MINRES and TFQMR in stoppingcriterium2

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Revision 1516 - Directory Listing
Modified Fri Apr 18 01:02:25 2008 UTC (14 years, 11 months ago) by ksteube

Reduced L and changed Arenious from 22.0 to 0.0

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Revision 1515 - Directory Listing
Modified Thu Apr 17 23:36:31 2008 UTC (14 years, 11 months ago) by ksteube

Change to 3-D and change viscosity

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Revision 1514 - Directory Listing
Modified Wed Apr 16 00:15:44 2008 UTC (14 years, 11 months ago) by artak

default input parameter iter_restart for GMRES is set to 20

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Revision 1513 - Directory Listing
Modified Tue Apr 15 08:47:57 2008 UTC (14 years, 11 months ago) by gross

pragma ivdep removed. icc produced wrong code.

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Revision 1512 - Directory Listing
Modified Tue Apr 15 00:54:25 2008 UTC (14 years, 11 months ago) by ksteube

Some typos

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Revision 1511 - Directory Listing
Modified Mon Apr 14 23:09:38 2008 UTC (14 years, 11 months ago) by gross

some fixes of compiler complains under windows

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Revision 1494 - Directory Listing
Modified Mon Apr 14 06:53:28 2008 UTC (14 years, 11 months ago) by phornby

Make this exactly the same as the run_linearPDEsOnFinley.py.trunk_version on the windows
port branch.
Makes merge easier later.

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Revision 1489 - Directory Listing
Modified Mon Apr 14 04:29:30 2008 UTC (14 years, 11 months ago) by artak

Initial version of TFQMR method

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Revision 1488 - Directory Listing
Modified Fri Apr 11 00:22:31 2008 UTC (14 years, 11 months ago) by artak

restart parameter is changed in GMRES(m)

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Revision 1487 - Directory Listing
Modified Thu Apr 10 05:28:01 2008 UTC (14 years, 11 months ago) by gross

reordering when reading Netcfd files added.

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Revision 1486 - Directory Listing
Modified Thu Apr 10 00:10:50 2008 UTC (14 years, 11 months ago) by artak

minor

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Revision 1485 - Directory Listing
Modified Wed Apr 9 04:13:09 2008 UTC (14 years, 11 months ago) by ksteube

Removed semicolons from #pragma omp

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Revision 1484 - Directory Listing
Modified Wed Apr 9 03:25:53 2008 UTC (14 years, 11 months ago) by artak

minor: PCG set as default solver

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Revision 1483 - Directory Listing
Modified Wed Apr 9 03:20:00 2008 UTC (14 years, 11 months ago) by artak

command line input parameters manipulation and execution time calculation are added

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Revision 1482 - Directory Listing
Modified Wed Apr 9 02:29:47 2008 UTC (14 years, 11 months ago) by artak

inital x taken into account in MINRES algorithm

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Revision 1481 - Directory Listing
Modified Wed Apr 9 00:45:47 2008 UTC (14 years, 11 months ago) by artak

initial version of MINRES algorithm

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Revision 1480 - Directory Listing
Modified Tue Apr 8 02:02:48 2008 UTC (14 years, 11 months ago) by artak

Unil.h header is added

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Revision 1479 - Directory Listing
Modified Tue Apr 8 02:02:25 2008 UTC (14 years, 11 months ago) by artak

Unil.h header is added

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Revision 1478 - Directory Listing
Modified Tue Apr 8 01:53:33 2008 UTC (14 years, 11 months ago) by gross

some more header file fixing

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Revision 1477 - Directory Listing
Modified Tue Apr 8 01:50:17 2008 UTC (14 years, 11 months ago) by gross

missing header file included

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Revision 1476 - Directory Listing
Modified Mon Apr 7 23:38:50 2008 UTC (14 years, 11 months ago) by gross

Jacobian-free Newton method added to Paso

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Revision 1475 - Directory Listing
Modified Mon Apr 7 05:13:21 2008 UTC (14 years, 11 months ago) by artak

Initial version of GMRES with restart

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Revision 1474 - Directory Listing
Modified Mon Apr 7 01:27:01 2008 UTC (14 years, 11 months ago) by gross

restart is supported now.

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Revision 1473 - Directory Listing
Modified Fri Apr 4 07:49:18 2008 UTC (14 years, 11 months ago) by gross

initial checkin for level set

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Revision 1472 - Directory Listing
Modified Thu Apr 3 09:07:07 2008 UTC (14 years, 11 months ago) by gross

some first steps towards restart added

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Revision 1471 - Directory Listing
Modified Thu Apr 3 05:19:06 2008 UTC (14 years, 11 months ago) by gross

test for GMRES solver for Stokes problem added

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Revision 1470 - Directory Listing
Modified Thu Apr 3 05:17:54 2008 UTC (14 years, 11 months ago) by gross

bug in pressure definition fixed

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Revision 1469 - Directory Listing
Modified Thu Apr 3 05:16:56 2008 UTC (14 years, 11 months ago) by gross

additional stopping criterion added

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Revision 1468 - Directory Listing
Modified Thu Apr 3 04:14:48 2008 UTC (14 years, 11 months ago) by gross

test for GMRES added

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Revision 1467 - Directory Listing
Modified Wed Apr 2 08:10:37 2008 UTC (14 years, 11 months ago) by gross

a bit of reengineering.

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Revision 1466 - Directory Listing
Modified Wed Apr 2 03:33:43 2008 UTC (14 years, 11 months ago) by artak

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Revision 1465 - Directory Listing
Modified Wed Apr 2 03:28:25 2008 UTC (14 years, 11 months ago) by artak

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Revision 1464 - Directory Listing
Modified Tue Apr 1 23:27:09 2008 UTC (14 years, 11 months ago) by gross

bug for interpoltion from reduced solution to elements in MPI fixed.

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Revision 1463 - Directory Listing
Modified Tue Apr 1 05:20:57 2008 UTC (14 years, 11 months ago) by gross

a better convection code

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Revision 1459 - Directory Listing
Modified Thu Mar 27 01:49:10 2008 UTC (14 years, 11 months ago) by ksteube

Implemented ParMETIS for mesh partition optimization under MPI.
Documented optimize=True in User Guide for Brick() and Rectangle().

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Revision 1458 - Directory Listing
Modified Mon Mar 3 23:42:06 2008 UTC (15 years ago) by ksteube

Added config file for virtual machine with hostname 'vm_system'

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Revision 1456 - Directory Listing
Modified Thu Feb 28 17:20:49 2008 UTC (15 years ago) by phornby

Clean up some debugging files from the branch merge.

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Revision 1455 - Directory Listing
Modified Thu Feb 28 17:19:44 2008 UTC (15 years ago) by phornby

Merge of branches/windows_from_1431_trunk.

Revamp of the exception system.
Fix unused vars and signed/unsigned comparisons.
defined a macro THROW(ARG) in the system_dep.h's to
deal with the expectations of declarations on different architectures.

Details in the logs of branches/windows_from_1431_trunk.

pre-merge snapshot of the trunk in tags/trunk_at_1452

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Revision 1431 - Directory Listing
Modified Wed Feb 27 09:52:25 2008 UTC (15 years ago) by trankine

This trunk now compiles and links under windows.
It passes the FunctionSpace.__str__() test 50000 times on windows.
It fails scons run_tests and scons_py_tests as it always did, but I have an idea why.

Please remember to add the appropriate dll linkage info to declarations that are to be visible outside a .so or .dll. Terry (BTW, PGH here) spent a lot of hacks clearing out blocktimer from the rest of the code when these 5 or 6 lines would have done the trick.

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Revision 1430 - Directory Listing
Modified Wed Feb 27 09:07:19 2008 UTC (15 years ago) by trankine

Get the windows dll linkage right fo C_TensorBinaryOperation

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Revision 1429 - Directory Listing
Modified Wed Feb 27 08:53:20 2008 UTC (15 years ago) by trankine

"and" and "or" are not C or C++ boolean operations.

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Revision 1428 - Directory Listing
Modified Wed Feb 27 08:07:11 2008 UTC (15 years ago) by trankine

Merge changes from windows port branch to test build on *nix not broken.

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Revision 1427 - Directory Listing
Modified Wed Feb 27 07:54:48 2008 UTC (15 years ago) by trankine

brought from the windows port branch. Should make no difference to *nix's

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Revision 1426 - Directory Listing
Modified Wed Feb 27 06:12:15 2008 UTC (15 years ago) by trankine

Merge the changes to these few files with the windows port branch to test just these changes under linux and altix.

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Revision 1425 - Directory Listing
Modified Wed Feb 27 06:12:04 2008 UTC (15 years ago) by artak

Added new test for BiCGStab in run_simplesolve.py
algorithmic change in BICGSTAB: from r=r-wt to r=s-wt

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Revision 1423 - Directory Listing
Modified Wed Feb 27 04:28:48 2008 UTC (15 years ago) by gross

interpoilation inserted

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Revision 1417 - Directory Listing
Modified Mon Feb 25 04:45:48 2008 UTC (15 years ago) by gross

some more work on the transport solver.

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Revision 1416 - Directory Listing
Modified Mon Feb 25 03:56:17 2008 UTC (15 years ago) by ksteube

Set version number to 0 in case it's empty.

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Revision 1415 - Directory Listing
Modified Thu Feb 21 04:57:17 2008 UTC (15 years, 1 month ago) by ksteube

Recent fixes have remedied problems with running OpenMP/MPI mixed mode programming.

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Revision 1414 - Directory Listing
Modified Thu Feb 14 10:01:43 2008 UTC (15 years, 1 month ago) by gross

a first verion of a Stokes solver

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Revision 1413 - Directory Listing
Modified Sun Feb 10 08:45:37 2008 UTC (15 years, 1 month ago) by gross

bug effecting MPI fixed found while compiling with windows.

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Revision 1412 - Directory Listing
Modified Fri Feb 8 04:46:10 2008 UTC (15 years, 1 month ago) by ksteube

Updated configuration for ac.apac.edu.au

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Revision 1411 - Directory Listing
Modified Thu Feb 7 08:09:15 2008 UTC (15 years, 1 month ago) by gross

second test for upwinding added

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Revision 1410 - Directory Listing
Modified Thu Feb 7 04:24:00 2008 UTC (15 years, 1 month ago) by gross

a new version of the algebric upwinding a. flux limiter

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Revision 1409 - Directory Listing
Modified Wed Feb 6 22:44:28 2008 UTC (15 years, 1 month ago) by gross

getTagNumber called the wrong corresponding FunctionSpace method. Results were wrong for number of data points per sample >1.

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Revision 1408 - Directory Listing
Modified Mon Feb 4 07:19:50 2008 UTC (15 years, 1 month ago) by gross

some problems with openmp fixed.

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Revision 1407 - Directory Listing
Modified Mon Feb 4 06:45:48 2008 UTC (15 years, 1 month ago) by gross

new upwinding algorithm (still fails)

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Revision 1403 - Directory Listing
Modified Thu Jan 31 04:17:38 2008 UTC (15 years, 1 month ago) by ksteube

Added configuration options for VM to give it access to NetCDF

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Revision 1402 - Directory Listing
Modified Thu Jan 31 00:17:49 2008 UTC (15 years, 1 month ago) by ksteube

now implemented to read/fan out elements

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Revision 1401 - Directory Listing
Modified Fri Jan 25 04:31:18 2008 UTC (15 years, 1 month ago) by gross

rewrite antidiffusion calculation to avoid coloring for OPENMP parallelization

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Revision 1400 - Directory Listing
Modified Thu Jan 24 06:04:31 2008 UTC (15 years, 1 month ago) by gross

better test example for upwinding added

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Revision 1393 - Directory Listing
Modified Mon Jan 21 06:21:14 2008 UTC (15 years, 2 months ago) by gross

axissymmetric collaps added.

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Revision 1392 - Directory Listing
Modified Mon Jan 21 06:20:54 2008 UTC (15 years, 2 months ago) by gross

axissymmetric collaps added.

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Revision 1391 - Directory Listing
Modified Mon Jan 14 03:54:57 2008 UTC (15 years, 2 months ago) by gross

a waring is printed if the revision number could not be recovered.

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Revision 1390 - Directory Listing
Modified Mon Jan 14 03:46:11 2008 UTC (15 years, 2 months ago) by gross

typo fixed.

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Revision 1389 - Directory Listing
Modified Mon Jan 14 03:31:57 2008 UTC (15 years, 2 months ago) by gross

a hopefully more robust way of setting the revision number.

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Revision 1388 - Directory Listing
Modified Fri Jan 11 07:45:58 2008 UTC (15 years, 2 months ago) by trankine
Copied from: temp revision 1387

And get the *(&(*&(* name right

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Revision 1387 - Directory Listing
Modified Fri Jan 11 07:45:26 2008 UTC (15 years, 2 months ago) by trankine
Original Path: temp
Copied from: temp_trunk_copy revision 1386

Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

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Revision 1384 - Directory Listing
Modified Fri Jan 11 02:29:38 2008 UTC (15 years, 2 months ago) by phornby
Original Path: temp_trunk_copy
Copied from: trunk revision 1383

Make a temp copy of the trunk before checking in the windows changes

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Revision 1383 - Directory Listing
Modified Thu Jan 10 06:48:28 2008 UTC (15 years, 2 months ago) by phornby

Link to the latest boost.

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Revision 1382 - Directory Listing
Modified Thu Jan 10 00:21:22 2008 UTC (15 years, 2 months ago) by gross

some tests got deactivated. they are back now.

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Revision 1381 - Directory Listing
Modified Wed Jan 9 07:59:15 2008 UTC (15 years, 2 months ago) by gross

import sys missing

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Revision 1380 - Directory Listing
Modified Wed Jan 9 04:26:03 2008 UTC (15 years, 2 months ago) by gross

some info about the modules to be used

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Revision 1379 - Directory Listing
Modified Wed Jan 9 04:17:03 2008 UTC (15 years, 2 months ago) by gross

this seems to work on the cognac@ivec.org

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Revision 1378 - Directory Listing
Modified Wed Jan 9 03:53:38 2008 UTC (15 years, 2 months ago) by gross

new reference files considering the change in quadrature schemes

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Revision 1377 - Directory Listing
Modified Wed Jan 9 03:45:59 2008 UTC (15 years, 2 months ago) by gross

Some code was moved around to slow down the bustling intel compiler v10.

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Revision 1376 - Directory Listing
Modified Wed Jan 9 01:38:18 2008 UTC (15 years, 2 months ago) by gross

inserted sys.exit(1) into the tests so scons can detect the failure of the test. 
A similar statement has been removed from an earlier as it produces problems on 64bit Linux. Previously exit(0) was called in case of success but now this is not done in order to avoid a fatal end of the program. in the case of an error in the test there could be a fatal error so but I guess that this not really a problem.

PS: the fact that signal 0 was returned even for the case of an error lead to the illusion that all tests have been completed successfully.

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Revision 1375 - Directory Listing
Modified Wed Jan 9 00:15:05 2008 UTC (15 years, 2 months ago) by gross

bug in interpolation at reduced face elements fixed.

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Revision 1374 - Directory Listing
Modified Tue Jan 8 09:37:55 2008 UTC (15 years, 2 months ago) by gross

some changes to get things going on the cognac.ivec.org.

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Revision 1373 - Directory Listing
Modified Mon Jan 7 05:32:25 2008 UTC (15 years, 2 months ago) by gross

on ess: link against python 2.4.3 now.

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Revision 1372 - Directory Listing
Modified Thu Jan 3 06:30:47 2008 UTC (15 years, 2 months ago) by gross

some OMP related compile problems fixed.

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Revision 1371 - Directory Listing
Modified Thu Jan 3 06:11:21 2008 UTC (15 years, 2 months ago) by gross

some bugs in the updwing scheme but there are still problem with the cross wind direction.

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Revision 1370 - Directory Listing
Modified Wed Jan 2 09:21:43 2008 UTC (15 years, 2 months ago) by gross

explicit upwinding scheme added.

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Revision 1369 - Directory Listing
Modified Fri Dec 21 05:51:44 2007 UTC (15 years, 3 months ago) by gross

does something now!

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Revision 1368 - Directory Listing
Modified Wed Dec 19 03:45:20 2007 UTC (15 years, 3 months ago) by gross

very first step towards a pythn wrapper for the transport problem.

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Revision 1367 - Directory Listing
Modified Wed Dec 19 02:45:07 2007 UTC (15 years, 3 months ago) by gross

finley can now assemble a transport problem.

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Revision 1366 - Directory Listing
Modified Tue Dec 18 05:49:17 2007 UTC (15 years, 3 months ago) by gross

finley can create a TransportProblem now

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Revision 1365 - Directory Listing
Modified Mon Dec 17 07:28:23 2007 UTC (15 years, 3 months ago) by gross

some cosmetics.

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Revision 1364 - Directory Listing
Modified Mon Dec 17 07:22:45 2007 UTC (15 years, 3 months ago) by gross

finley interface to paso's transport solver added.

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Revision 1363 - Directory Listing
Modified Mon Dec 17 03:42:03 2007 UTC (15 years, 3 months ago) by gross

initialization for FCT solver added.

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Revision 1362 - Directory Listing
Modified Mon Dec 17 02:28:16 2007 UTC (15 years, 3 months ago) by gross

and more on FCT solver

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Revision 1361 - Directory Listing
Modified Fri Dec 14 09:26:51 2007 UTC (15 years, 3 months ago) by gross

first steps towards a flux controlled transport solver.

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Revision 1360 - Directory Listing
Modified Thu Dec 13 05:05:00 2007 UTC (15 years, 3 months ago) by ksteube

Partial implementation of ReadMeshMPI.
Will eventually replace ReadMesh but for now has a different name.

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Revision 1359 - Directory Listing
Modified Wed Dec 5 03:42:09 2007 UTC (15 years, 3 months ago) by gross

debug print removed.

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Revision 1358 - Directory Listing
Modified Wed Dec 5 03:41:06 2007 UTC (15 years, 3 months ago) by gross

setTaggedValue works now for expanded data.

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Revision 1357 - Directory Listing
Modified Thu Nov 29 08:39:32 2007 UTC (15 years, 3 months ago) by gross

interplote function returns now argument if it has requested function space

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Revision 1356 - Directory Listing
Modified Thu Nov 29 05:48:33 2007 UTC (15 years, 3 months ago) by poulet

* moved to python 2.4 to python 2.5

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Revision 1355 - Directory Listing
Modified Thu Nov 29 00:53:31 2007 UTC (15 years, 3 months ago) by ksteube

Test didn't compile on Windows due to lack of cast to double

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Revision 1354 - Directory Listing
Modified Wed Nov 28 02:23:30 2007 UTC (15 years, 3 months ago) by trankine

* rm and touch are not valid windows commands - use the scons provided methods.

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Revision 1353 - Directory Listing
Modified Thu Nov 22 06:05:35 2007 UTC (15 years, 4 months ago) by matt

Reversed the removal of blocktimer code. This needs to be fixed properly for
the Windows stuff to work.

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Revision 1352 - Directory Listing
Modified Thu Nov 22 03:43:28 2007 UTC (15 years, 4 months ago) by matt

Removed blocktimer code from Finley_Assemble_PDE().

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Revision 1351 - Directory Listing
Modified Thu Nov 22 01:54:26 2007 UTC (15 years, 4 months ago) by matt

Removed blocktimer code from gradOn().

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Revision 1350 - Directory Listing
Modified Thu Nov 22 01:17:20 2007 UTC (15 years, 4 months ago) by matt

Disambiguation of more template argument parameters so that it compiles under Windows.

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Revision 1349 - Directory Listing
Modified Wed Nov 21 06:38:08 2007 UTC (15 years, 4 months ago) by matt

Disambiguation of several template argument parameters so that it compiles under Windows.

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Revision 1348 - Directory Listing
Modified Mon Nov 19 00:21:36 2007 UTC (15 years, 4 months ago) by ksteube

If using MPI then disable OpenMP, because it doesn't work with both.
Record in trunk/lib what options we compiled with:
	OpenMP, MPI, debug, bounds_check

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Revision 1347 - Directory Listing
Modified Fri Nov 16 05:37:07 2007 UTC (15 years, 4 months ago) by ksteube

Completed mesh.dump(file) and mesh=LoadMesh(file) by adding TagMap and
implementing MPI parallelism.
Now allocating ElementFile for ContactElements even if there are none.
Removed file Mesh_dump.c since dump/loadMesh are in CPPAdapter/MeshAdapter*.cpp.

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Revision 1346 - Directory Listing
Modified Wed Nov 14 22:48:12 2007 UTC (15 years, 4 months ago) by ksteube

dump/LoadMesh methods work except for TagMap, Point elements probably OK but are untested.

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Revision 1345 - Directory Listing
Modified Wed Nov 14 07:53:34 2007 UTC (15 years, 4 months ago) by ksteube

Created LoadMesh to read a mesh from a distributed NetCDF file.
Can read nodes but not elements yet.

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Revision 1344 - Directory Listing
Modified Wed Nov 14 04:28:25 2007 UTC (15 years, 4 months ago) by ksteube

Now using TMPMEMFREE but still thrashes memory for very large mesh.
Future solution will be to use NetCDF subsetting and less temp memory.

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Revision 1343 - Directory Listing
Modified Wed Nov 14 02:48:02 2007 UTC (15 years, 4 months ago) by ksteube

First cut implementation of mesh.dump() using NetCDF.  TagMap not
saved yet.  The code for Points probably works but has not been tested.

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Revision 1342 - Directory Listing
Modified Thu Nov 8 23:56:58 2007 UTC (15 years, 4 months ago) by gross

improvements on integration schemes for tets and tris: double precision (not all), higher orders

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Revision 1341 - Directory Listing
Modified Thu Nov 8 23:55:20 2007 UTC (15 years, 4 months ago) by gross

tests for numerical integration added.

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Revision 1340 - Directory Listing
Modified Thu Nov 8 06:24:43 2007 UTC (15 years, 4 months ago) by ksteube

Fixed create a local labeling of the DOFs

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Revision 1339 - Directory Listing
Modified Wed Nov 7 01:53:12 2007 UTC (15 years, 4 months ago) by ksteube

Modified scons target release_src to include lib/ and include/ since
their presence is required for a build.  Modified
mydomain.print_mesh_info(True) to include more useful info about a
distributed domain.  Added mypde.getOperator().print_matrix_info(True)
to tell about a distributed matrix.

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Revision 1338 - Directory Listing
Modified Mon Nov 5 06:32:29 2007 UTC (15 years, 4 months ago) by gross

bug in the selection of the order of the output mesh fixed.

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Revision 1337 - Directory Listing
Modified Sun Nov 4 23:57:11 2007 UTC (15 years, 4 months ago) by ksteube

Generation of nightly docs failed through the weekend because the access
certificate had expired. I added a comment to tell how to remedy this problem.

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Revision 1336 - Directory Listing
Modified Fri Nov 2 06:48:47 2007 UTC (15 years, 4 months ago) by poulet

Chris Hines successfully modified this file to build escript on Cognac using:
* python/2.4.2
* intel-cc/10.0.023
* boost/1.33.1/python2.4.2/icc10.0.023
* netcdf/3.6.2
* intel-mkl
* scsl
* numarray/1.5.2

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Revision 1335 - Directory Listing
Modified Fri Nov 2 05:54:25 2007 UTC (15 years, 4 months ago) by gross

color ranges were not initialized.

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Revision 1334 - Directory Listing
Modified Thu Oct 25 05:08:54 2007 UTC (15 years, 4 months ago) by matt

Initial rewrite of escript unary operations. The rewritten operations are now single-pass.

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Revision 1333 - Directory Listing
Modified Tue Oct 23 03:30:15 2007 UTC (15 years, 5 months ago) by matt

scons configuration file for shake45.

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Revision 1332 - Directory Listing
Modified Tue Oct 23 03:28:51 2007 UTC (15 years, 5 months ago) by matt

Pow now uses the new binary function interface of C_TensorBinaryOperation.

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Revision 1331 - Directory Listing
Modified Tue Oct 23 00:42:15 2007 UTC (15 years, 5 months ago) by gross

ArithmeticTuple added. It is useful for certain applications of PCG

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Revision 1330 - Directory Listing
Modified Mon Oct 22 04:54:49 2007 UTC (15 years, 5 months ago) by gross

more flexible stopping criterium for the PCG

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Revision 1329 - Directory Listing
Modified Thu Oct 18 05:39:25 2007 UTC (15 years, 5 months ago) by ksteube

Can now compile with openmp on cyclone. Had to fix a bug in scons in intelc.py
to allow use of Intel compilers.

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Revision 1328 - Directory Listing
Modified Mon Oct 15 03:23:15 2007 UTC (15 years, 5 months ago) by matt

Fixed bug in power operation.

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Revision 1327 - Directory Listing
Modified Fri Oct 12 07:10:40 2007 UTC (15 years, 5 months ago) by matt

Initial rewrite of binary escript operations.

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Revision 1326 - Directory Listing
Modified Mon Oct 1 08:10:41 2007 UTC (15 years, 5 months ago) by ksteube

Implemented domain.print_mesh_info() so we can see the distribution of elements & nodes.
Implemented -DBOUNDS_CHECK to catch an error with periodicN=True.

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Revision 1325 - Directory Listing
Modified Mon Oct 1 06:28:24 2007 UTC (15 years, 5 months ago) by matt

DataArray has been removed as it is no longer used. Unit tests have been
updated accordingly with substitute constructs. Any files pertaining to
DataArray have been removed.

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Revision 1324 - Directory Listing
Modified Sun Sep 30 23:35:17 2007 UTC (15 years, 5 months ago) by ksteube

Interval mesh type has been removed from the User Guide
Adjusted getVersion method

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Revision 1323 - Directory Listing
Modified Thu Sep 27 06:20:29 2007 UTC (15 years, 5 months ago) by matt

Minor inconsistency.

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Revision 1322 - Directory Listing
Modified Thu Sep 27 04:40:43 2007 UTC (15 years, 5 months ago) by ksteube

Code now compiles and runs on cyclone.hpcu.uq.edu.au.
Had to remove intelc from the SConstruct, but didn't commit that change.
Changed a couple C++ comments to C comments.

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Revision 1319 - Directory Listing
Modified Thu Sep 27 00:27:51 2007 UTC (15 years, 5 months ago) by matt

DataArray is no longer needed. However, the unit tests still require it.

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Revision 1318 - Directory Listing
Modified Wed Sep 26 04:39:14 2007 UTC (15 years, 5 months ago) by ksteube

A very quick edit of chapter 3 of the User Guide. More editing needed.

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Revision 1317 - Directory Listing
Modified Tue Sep 25 03:41:48 2007 UTC (15 years, 5 months ago) by ksteube

yet another file copied from MPI branch to trunk

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Revision 1316 - Directory Listing
Modified Tue Sep 25 03:18:30 2007 UTC (15 years, 5 months ago) by ksteube

Quickly edited chapters 1 and 2 of the User Guide, but it needs more work.
Ran entire document through spell checker.

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Revision 1315 - Directory Listing
Modified Tue Sep 25 02:41:13 2007 UTC (15 years, 5 months ago) by ksteube

Copied more files from MPI branch to trunk

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Revision 1314 - Directory Listing
Modified Tue Sep 25 01:46:27 2007 UTC (15 years, 5 months ago) by ksteube

Copied a couple more files from MPI branch to trunk

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Revision 1313 - Directory Listing
Modified Tue Sep 25 01:44:26 2007 UTC (15 years, 5 months ago) by ksteube

Copied a handful of files from trunk-mpi-branch into trunk

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Revision 1312 - Directory Listing
Modified Mon Sep 24 06:18:44 2007 UTC (15 years, 5 months ago) by ksteube

The MPI branch is hereby closed. All future work should be in trunk.

Previously in revision 1295 I merged the latest changes to trunk into trunk-mpi-branch.
In this revision I copied all files from trunk-mpi-branch over the corresponding
trunk files. I did not use 'svn merge', it was a copy.

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Revision 1310 - Directory Listing
Modified Mon Sep 24 04:00:47 2007 UTC (15 years, 5 months ago) by ksteube

A few additions to make trunk match trunk-mpi-branch

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Revision 1292 - Directory Listing
Modified Thu Sep 6 05:37:33 2007 UTC (15 years, 6 months ago) by ksteube

Commented out setInsideOutOn call in setup because after that it's not
possible to use setInsideOutOff with rotation.

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Revision 1270 - Directory Listing
Modified Thu Aug 23 03:13:11 2007 UTC (15 years, 7 months ago) by gross

PlaneSurface accepts now non-Line primitives (stupid mistake to restrict the type. in fact a test for points on a plane is needed

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Revision 1250 - Directory Listing
Modified Thu Aug 16 02:54:42 2007 UTC (15 years, 7 months ago) by ksteube

Minor repairs to scons files

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Revision 1248 - Directory Listing
Modified Tue Aug 14 05:20:39 2007 UTC (15 years, 7 months ago) by phornby

Prepend various shareable library locations to PATH rather than appending.

Add (empty) include directory to the repository.

Impact of adding lib, include and esys dirs to repository.
You will need to move these aside in any checked out tree before doing an update.

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Revision 1247 - Directory Listing
Modified Tue Aug 14 01:29:20 2007 UTC (15 years, 7 months ago) by ksteube

New python method getVersion() which returns the Subversion revision
from which escript was compiled

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Revision 1246 - Directory Listing
Modified Mon Aug 13 22:09:00 2007 UTC (15 years, 7 months ago) by phornby

Add the esys and lib directories to the repository.
Remove the IS_WINDOWS_PLATFORM from the SConscripts, and
do the logic once in SConstruct.
SConstruct now includes example options files if the hostname_options file is not present. 
This needs some more work for the altix.
The tests now depend upon the build target. This is important it seems, as there appears to be the
possibility of calling linking different libraries
against incompatible versions of sub-libraries. 
This addressed most of the exceptions we were getting on windows.
All the useNetCDF logic is now done by SConstruct.
Made the init_target part of the build alias so that __ini__.py is created on a fresh checkout.

py_tests mostly pass on windows, only need to track down the exception in run_tests.

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Revision 1245 - Directory Listing
Modified Mon Aug 13 14:27:20 2007 UTC (15 years, 7 months ago) by phornby

Add in the netcdf libraries.

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Revision 1244 - Directory Listing
Modified Mon Aug 13 07:13:17 2007 UTC (15 years, 7 months ago) by phornby

use env['PROGSUFFIX'] instead of IS_WINDOWS_PLATFORM for the RunUnitTest builder.

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Revision 1243 - Directory Listing
Modified Mon Aug 13 06:48:37 2007 UTC (15 years, 7 months ago) by phornby

build is the default target, and will build a local installation in the source tree.
A new install target will do a build and install in the system directories. The system dierctories are set up for altix/linux systems with a prefix of '/usr'

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Revision 1242 - Directory Listing
Modified Mon Aug 13 06:45:41 2007 UTC (15 years, 7 months ago) by phornby

Update for the new SConstruct

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Revision 1241 - Directory Listing
Modified Mon Aug 13 06:41:05 2007 UTC (15 years, 7 months ago) by phornby

New options for the default windows + MSC combination.

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Revision 1240 - Directory Listing
Modified Mon Aug 13 06:39:29 2007 UTC (15 years, 7 months ago) by phornby

query python_cmd in env to get the python command.

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Revision 1235 - Directory Listing
Modified Mon Aug 13 00:25:29 2007 UTC (15 years, 7 months ago) by phornby

Started the removal of IS_WINDOWS_PLATFORM, and now insis that the windows options file be kept up to date, and be complete.

boost_libs -> boost_lib.

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Revision 1234 - Directory Listing
Modified Mon Aug 13 00:22:25 2007 UTC (15 years, 7 months ago) by phornby

Based on http://www.scons.org/wiki/DoxygenBuilder, this is a useful tool for managing doxygen builds.

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Revision 1233 - Directory Listing
Modified Mon Aug 13 00:20:22 2007 UTC (15 years, 7 months ago) by phornby

Much more extensive extensions that can make SConscripts much shorter.

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Revision 1232 - Directory Listing
Modified Fri Aug 10 06:44:04 2007 UTC (15 years, 7 months ago) by phornby

Reduce the number of IS_WINDOWS_PLATFORM references in SConstruct.
Change path to boost etc in windows_mscv71_options.py 
Some of these changes are present in windows_mscv71_options.py, more changes needed once I get the mscv71 build going properly.

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Revision 1221 - Directory Listing
Modified Fri Aug 3 00:27:20 2007 UTC (15 years, 7 months ago) by ksteube

Disabled HRZ lumping until the tests pass

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Revision 1220 - Directory Listing
Modified Thu Aug 2 04:46:20 2007 UTC (15 years, 7 months ago) by btully

Included HRZ lumping scheme for the LUMPED solver.

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Revision 1219 - Directory Listing
Modified Wed Aug 1 00:39:47 2007 UTC (15 years, 7 months ago) by ksteube

Adjustments to the nightly tests and document generation

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Revision 1218 - Directory Listing
Modified Wed Jul 18 01:01:41 2007 UTC (15 years, 8 months ago) by ksteube

New script to be run via cron on shake71 to generate all documentation
nightly.  This generates the docs available on the twiki page EsysLocalUser

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Revision 1217 - Directory Listing
Modified Wed Jul 18 00:47:01 2007 UTC (15 years, 8 months ago) by ksteube

Can now install into /usr with scons prefix=/usr and get a typical
python package install. Setting PYTHONPATH and LD_LIBRARY_PATH is
not necessary.

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Revision 1216 - Directory Listing
Modified Thu Jul 12 06:20:08 2007 UTC (15 years, 8 months ago) by ksteube

Build now works on systems where doxygen is not available.
Repaired target scons guide_html_index to create HTML user guide.

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Revision 1215 - Directory Listing
Modified Thu Jul 12 01:14:55 2007 UTC (15 years, 8 months ago) by ksteube

Repaired all targets for: scons docs
It runs all these targets: release_examples guide_pdf api_epydoc api_doxygen

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Revision 1214 - Directory Listing
Modified Wed Jul 11 04:21:45 2007 UTC (15 years, 8 months ago) by ksteube

Add image missing from user guide

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Revision 1213 - Directory Listing
Modified Thu Jul 5 04:18:34 2007 UTC (15 years, 8 months ago) by jongui

Added a reference directory for sample images for the unit testing.

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Revision 1212 - Directory Listing
Modified Thu Jul 5 00:41:19 2007 UTC (15 years, 8 months ago) by jongui

Made some minor changes to the guide.

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Revision 1211 - Directory Listing
Modified Wed Jul 4 05:16:46 2007 UTC (15 years, 8 months ago) by jongui

- Fixed some minor bugs.
- Added a new feature called 'MapOnScalarClipWithRotation' that clips a two-dimensional data with a scalar value and subsequently rotating it to create a three-dimensional effect.
- Corresponding examples, test cases and documentation of the new module have also been added.

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Revision 1210 - Directory Listing
Modified Tue Jul 3 05:47:34 2007 UTC (15 years, 8 months ago) by jongui

Made some minor changes.

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Revision 1209 - Directory Listing
Modified Mon Jul 2 05:46:49 2007 UTC (15 years, 8 months ago) by jongui

Fixed a minor problem with regards to the Carpet module distinguishing between 2D and 3D data.

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Revision 1208 - Directory Listing
Modified Mon Jul 2 04:46:10 2007 UTC (15 years, 8 months ago) by jongui

Made some changes to the Carpet module. When 3D data is used, a cut will be performed using a plane before deformation occurs on the plane. However, if 2D data is used a cut will NOT be performed and deformation will instead occur immediately. 

Pyvisi distinguishes 2D from 3D data by retrieving the length of the z-axis. A 2D data will have a z-axis length of zero while a 3D data will have a z-axis length of non-zero. There are exceptions to these rules where some 2D data may have a non-zero z-axis length. However, such exceptions are not taken into account at this stage.

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Revision 1207 - Directory Listing
Modified Mon Jul 2 02:02:26 2007 UTC (15 years, 8 months ago) by jongui

Made some changes to the Carpet module. When 3D data is used, a cut will be performed using a plane before deformation occurs on the plane. However, if 2D data is used a cut will NOT be performed and deformation will instead occur immediately. 

Pyvisi distinguishes 2D from 3D data by retrieving the length of the z-axis. A 2D data will have a z-axis length of zero while a 3D data will have a z-axis length of non-zero. There are exceptions to these rules where some 2D data may have a non-zero z-axis length. However, such exceptions are not taken into account at this stage.

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Revision 1206 - Directory Listing
Modified Fri Jun 29 06:09:19 2007 UTC (15 years, 8 months ago) by jongui

Updated the guide further.

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Revision 1205 - Directory Listing
Modified Fri Jun 29 04:44:04 2007 UTC (15 years, 8 months ago) by jongui

- Fixed a minor bug in the Velocity module.
- Added the Rectangle module which enables rectangles to be created.
- Added corresponding examples and test cases for the Rectangle.
- Updated the guide and necessary epydocs.

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Revision 1204 - Directory Listing
Modified Sat Jun 23 11:43:12 2007 UTC (15 years, 9 months ago) by gross

a frame for an improved lumping procedure added.

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Revision 1203 - Directory Listing
Modified Thu Jun 21 23:17:16 2007 UTC (15 years, 9 months ago) by jongui

Made some minor changes to the exampels.

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Revision 1202 - Directory Listing
Modified Thu Jun 21 04:44:17 2007 UTC (15 years, 9 months ago) by jongui

Minor change to the movie example.

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Revision 1201 - Directory Listing
Modified Thu Jun 21 04:42:56 2007 UTC (15 years, 9 months ago) by jongui

Added a pyvisi readme file for internal use (by Ken).

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Revision 1200 - Directory Listing
Modified Thu Jun 21 02:04:47 2007 UTC (15 years, 9 months ago) by jongui

Corrected a small epydoc error.

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Revision 1199 - Directory Listing
Modified Wed Jun 20 05:01:30 2007 UTC (15 years, 9 months ago) by jongui

- Updated the epydocs and guide.
Deleted redundant files and methods.
Tidied up the codes.

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Revision 1198 - Directory Listing
Modified Tue Jun 19 00:24:29 2007 UTC (15 years, 9 months ago) by btully

Updated Rec9 Shape Functions.
Included a new definition for Hex27 Reference Element and associated Shape Functions.

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Revision 1197 - Directory Listing
Modified Mon Jun 18 02:08:34 2007 UTC (15 years, 9 months ago) by jongui

Update the way movies are generated. Please refer to the examples. 

The user can now either specify the image range(first and last images inclusive):
mov.imageRange(input_directory = PYVISI_EXAMPLE_IMAGES_PATH,
        first_image = IMAGE_NAME + "000938.jpg",
		last_image = IMAGE_NAME + "000948.jpg")
mov.makeMovie(os.path.join(PYVISI_EXAMPLE_IMAGES_PATH, "movie.mpg"))

or the user can specify a list of images:

lst = ['image1.jpg', 'image5.jpg', 'image7.jpg]
mov.imageList(input_directory = PYVISI_EXAMPLE_IMAGES_PATH, image_list = lst)
mov.makeMovie(os.path.join(PYVISI_EXAMPLE_IMAGES_PATH, "movie.mpg"))

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Revision 1194 - Directory Listing
Modified Thu Jun 14 05:53:49 2007 UTC (15 years, 9 months ago) by jongui

- Fixed a minor bug in the Camera module.
- Added some extra capability to the Movie module.
- The Camera module now has the capability to perform parallel projection by calling the 'parallelProjectionOn' method.
- The Camera at this stage is only capable of zooming towards the rendered object using 'dolly'. However, it appears that 'dolly' cannot be used to perform zooming out.

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Revision 1193 - Directory Listing
Modified Wed Jun 13 22:35:25 2007 UTC (15 years, 9 months ago) by jongui

Added the missing movie module.

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Revision 1191 - Directory Listing
Modified Tue Jun 12 05:54:41 2007 UTC (15 years, 9 months ago) by jongui

A movie can now be generated within the python script itself by creating an instace of 'Movie'. The 'Movie' instance will in turn execute the 'ppmtompeg' command. The corresponding tests and examples have also been added.

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Revision 1190 - Directory Listing
Modified Fri Jun 8 05:47:25 2007 UTC (15 years, 9 months ago) by jongui

Fixed a minor bug in the scene module.

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Revision 1189 - Directory Listing
Modified Thu Jun 7 05:31:25 2007 UTC (15 years, 9 months ago) by jongui

A Scalar Bar can now be displayed by creating an instance of a 'Legend'. The Scalar Bar can either show the scalar data range or vector data range. Corresponding examples and tests have also been added.

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Revision 1186 - Directory Listing
Modified Fri Jun 1 03:26:23 2007 UTC (15 years, 9 months ago) by ksteube

More mods to compile options for ac.apac.edu.au

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Revision 1185 - Directory Listing
Modified Thu May 31 04:33:31 2007 UTC (15 years, 9 months ago) by gross

once again: some changes to get the tests passed on windows.

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Revision 1184 - Directory Listing
Modified Thu May 31 04:28:37 2007 UTC (15 years, 9 months ago) by matt

Fixed netCDF compile option.

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Revision 1181 - Directory Listing
Modified Wed May 30 06:08:44 2007 UTC (15 years, 9 months ago) by gross

some more test for vtk interface

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Revision 1180 - Directory Listing
Modified Wed May 30 05:53:38 2007 UTC (15 years, 9 months ago) by gross

some new test data

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Revision 1179 - Directory Listing
Modified Wed May 30 05:10:02 2007 UTC (15 years, 9 months ago) by gross

some debug print outs removed.

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Revision 1178 - Directory Listing
Modified Wed May 30 05:03:17 2007 UTC (15 years, 9 months ago) by gross

bug in visualization interface test fixed.

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Revision 1177 - Directory Listing
Modified Wed May 30 05:01:29 2007 UTC (15 years, 9 months ago) by gross

debug print out removed.

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Revision 1175 - Directory Listing
Modified Wed May 30 03:51:11 2007 UTC (15 years, 9 months ago) by ksteube

Adjustments for ac.apac.edu.au paths

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Revision 1174 - Directory Listing
Modified Tue May 29 07:05:59 2007 UTC (15 years, 9 months ago) by gross

more modifications to the test rquired by the new intergartion schemes

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Revision 1173 - Directory Listing
Modified Mon May 28 03:29:57 2007 UTC (15 years, 9 months ago) by ksteube

Reverted to revision 1170, update in 1171 was a mistake

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Revision 1172 - Directory Listing
Modified Mon May 28 00:03:32 2007 UTC (15 years, 9 months ago) by jongui

Made some minor changes to the tests.

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Revision 1171 - Directory Listing
Modified Fri May 25 06:55:05 2007 UTC (15 years, 9 months ago) by gross

some modifications to the tests to consider the new integration schemes for tri and tet

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Revision 1170 - Directory Listing
Modified Fri May 25 05:24:57 2007 UTC (15 years, 9 months ago) by btully

Added new methods for integration of Tri's and Tet's For Order 2 and 3.
NB: There is a conflict in the testing of the getNormal() function. On consultation with Lutz, we have concluded this is an issue with the test rather than the new methods.

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Revision 1169 - Directory Listing
Modified Fri May 25 03:44:14 2007 UTC (15 years, 9 months ago) by jongui

Added another example that shows the use of multiple modules in a script together.

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Revision 1168 - Directory Listing
Modified Thu May 24 05:36:42 2007 UTC (15 years, 10 months ago) by jongui

Pyvisi now has the capability to save the rendered objects as VRML (.wrl) and OpenInventor (.iv) file types. Corresponding tests have also been added.

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Revision 1167 - Directory Listing
Modified Thu May 24 01:04:17 2007 UTC (15 years, 10 months ago) by jongui

Deleted remaining scenes from the test cases and updated the guide.

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Revision 1166 - Directory Listing
Modified Thu May 24 00:56:00 2007 UTC (15 years, 10 months ago) by jongui

Updated some test.

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Revision 1164 - Directory Listing
Modified Thu May 24 00:38:40 2007 UTC (15 years, 10 months ago) by jongui

As it turned out XAUTHORITY has to be imported into scons, too.

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Revision 1163 - Directory Listing
Modified Wed May 23 23:56:39 2007 UTC (15 years, 10 months ago) by gross

import of DISPLAY environment variable into scons ENV added. This is required to run pyvisi tests under XGL

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Revision 1162 - Directory Listing
Modified Wed May 23 05:31:15 2007 UTC (15 years, 10 months ago) by jongui

Added a script that executes all test scripts.

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Revision 1161 - Directory Listing
Modified Wed May 23 04:17:52 2007 UTC (15 years, 10 months ago) by jongui

Made some minor updates to the test.

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Revision 1160 - Directory Listing
Modified Wed May 23 00:44:01 2007 UTC (15 years, 10 months ago) by gross

The OMP_NUM_THREADS environment variable is now imported into the scons evironment.

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Revision 1159 - Directory Listing
Modified Tue May 22 05:09:31 2007 UTC (15 years, 10 months ago) by jongui

Some update to test_escript.

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Revision 1158 - Directory Listing
Modified Tue May 22 04:24:01 2007 UTC (15 years, 10 months ago) by jongui

Made some changes to fix the memory leak problem. However, the problem still persists for run_escript_with_lazy_evaluation.py, run_streamline.py and run_streamline_with_lazy_evaluation.py.

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Revision 1157 - Directory Listing
Modified Mon May 21 06:45:52 2007 UTC (15 years, 10 months ago) by gross

ops, wrong name

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Revision 1156 - Directory Listing
Modified Mon May 21 06:45:14 2007 UTC (15 years, 10 months ago) by gross

node label optimization

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Revision 1154 - Directory Listing
Modified Fri May 18 02:46:32 2007 UTC (15 years, 10 months ago) by jongui

Updated the in-line documentation and guide.

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Revision 1153 - Directory Listing
Modified Thu May 17 06:33:54 2007 UTC (15 years, 10 months ago) by jongui

Made some minor modifications and fixed minor bugs. Most tests appear to pass on the Altix although there are two tests which occasionally throw an error related to memory corruption.

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Revision 1152 - Directory Listing
Modified Thu May 17 04:46:04 2007 UTC (15 years, 10 months ago) by gross

some features for PMDCRC project

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Revision 1151 - Directory Listing
Modified Thu May 17 04:11:18 2007 UTC (15 years, 10 months ago) by jongui

More update.

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Revision 1150 - Directory Listing
Modified Thu May 17 00:42:34 2007 UTC (15 years, 10 months ago) by jongui

Added the new images.

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Revision 1149 - Directory Listing
Modified Thu May 17 00:30:15 2007 UTC (15 years, 10 months ago) by gross

some fixes from the windows version

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Revision 1148 - Directory Listing
Modified Wed May 16 22:45:33 2007 UTC (15 years, 10 months ago) by jongui

Added the updated files for pyvisi and removed some incorrect reference images.

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Revision 1147 - Directory Listing
Modified Wed May 16 06:39:11 2007 UTC (15 years, 10 months ago) by ksteube

Added back in some files that were accidentally deleted.

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Revision 1146 - Directory Listing
Modified Wed May 16 05:07:02 2007 UTC (15 years, 10 months ago) by jongui

Removed the old version of pyvisi.

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Revision 1144 - Directory Listing
Modified Wed May 16 04:51:19 2007 UTC (15 years, 10 months ago) by jongui

Added updated files.

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Revision 1143 - Directory Listing
Modified Wed May 16 04:49:55 2007 UTC (15 years, 10 months ago) by jongui

some cleanup.

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Revision 1141 - Directory Listing
Modified Tue May 15 04:24:51 2007 UTC (15 years, 10 months ago) by gross

Some changes to make things run on windows. There is still a problem with netcdf an long file names on windows but there is the suspicion that this is a bigger problem related to boost (compiler options). In fact runs with large numbers of iteration/time steps tend to create seg faults. 

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Revision 1139 - Directory Listing
Modified Mon May 14 05:12:53 2007 UTC (15 years, 10 months ago) by ksteube

Finished renaming of boost_lib to boost_libs and boost_lib_path to boost_libs_path.

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Revision 1138 - Directory Listing
Modified Mon May 14 04:15:04 2007 UTC (15 years, 10 months ago) by gross

 * some of the sys.exit calls removed.
 * some modifications on the test (and more work needs to be done, use test/python/run_carpet.py as an example) to get them going with scons 

-> things seems to run on windows XP.

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Revision 1137 - Directory Listing
Modified Thu May 10 08:11:31 2007 UTC (15 years, 10 months ago) by gross

This version passes the tests on windows except for 

   * vtk
   * netCDF

The version needs to be tested on altix and linux

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Revision 1135 - Directory Listing
Modified Wed May 9 01:58:32 2007 UTC (15 years, 10 months ago) by gross

These are still modifications for windows.

The run_generators.py and run_visualization_interface.py pass now. There is no need for the win32 reference directory. 

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Revision 1134 - Directory Listing
Modified Wed May 9 01:44:04 2007 UTC (15 years, 10 months ago) by gross

fixed a bag in the extra bits to make the ordering unique. This does not effect the correctness of the result but makes sure that the results are independent from the sorting algorithm.

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Revision 1133 - Directory Listing
Modified Tue May 8 07:19:33 2007 UTC (15 years, 10 months ago) by gross

Changes needed for windows. This still does not work on and has not run on linux and the altix. 
 
There are a few changes in names in the scons script, in particular _libs is used rather than _lib and _libs is always a list. By default on windows MSVC is used. The location of python is at C:\Program Files\python<version>, boost at C:\Program Files\boost and netcdf at C:\Program Files\netcdf. 

 

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Revision 1132 - Directory Listing
Modified Tue May 8 05:58:46 2007 UTC (15 years, 10 months ago) by phornby

c flags to suppress pragma warnings

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Revision 1131 - Directory Listing
Modified Tue May 8 05:52:21 2007 UTC (15 years, 10 months ago) by gross

netcdf c++ interface removed

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Revision 1130 - Directory Listing
Modified Tue May 8 04:23:51 2007 UTC (15 years, 10 months ago) by gross

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Revision 1129 - Directory Listing
Modified Tue May 8 04:23:25 2007 UTC (15 years, 10 months ago) by gross

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Revision 1128 - Directory Listing
Modified Tue May 8 04:22:53 2007 UTC (15 years, 10 months ago) by gross

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Revision 1127 - Directory Listing
Modified Tue May 8 03:23:12 2007 UTC (15 years, 10 months ago) by gross

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Revision 1125 - Directory Listing
Modified Thu May 3 05:40:30 2007 UTC (15 years, 10 months ago) by ksteube

Print more convergence info in the verbose output

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Revision 1123 - Directory Listing
Modified Thu May 3 04:13:52 2007 UTC (15 years, 10 months ago) by gross

PropertySets cann now be created wirout an intial 
set of items.

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Revision 1122 - Directory Listing
Modified Tue May 1 03:21:04 2007 UTC (15 years, 10 months ago) by gross

As the LinearPDE uses coefficients as reduced even if they are handed
over as full the projector runs into a problem when reduced and full
arguments are used in the same projector. Now the projector resets the
coefficients befor starting the projection.

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Revision 1119 - Directory Listing
Modified Tue Apr 24 08:58:05 2007 UTC (15 years, 10 months ago) by gross

debug print removed.

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Revision 1118 - Directory Listing
Modified Tue Apr 24 08:55:04 2007 UTC (15 years, 10 months ago) by gross

problem with reset of faulty PDE rhs fixed.

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Revision 1116 - Directory Listing
Modified Mon Apr 23 03:36:34 2007 UTC (15 years, 11 months ago) by gross

Interporpolation from full to reduced integration order added.

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Revision 1115 - Directory Listing
Modified Sun Apr 22 07:18:30 2007 UTC (15 years, 11 months ago) by jongui

The problem regarding the increasing use of memory when Map is instantiated is partially fixed. Some problems still persists when the Map instance invoke methods.

Therefore, the run_map.py auto test have been disabled for the time being.

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Revision 1114 - Directory Listing
Modified Sun Apr 22 05:16:05 2007 UTC (15 years, 11 months ago) by jongui

Started doing some changes to the modules due to the problem of the continuous increase in memory usage when reading directly from escript objects.

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Revision 1113 - Directory Listing
Modified Thu Apr 19 08:53:24 2007 UTC (15 years, 11 months ago) by jongui

Added some epydocs.

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Revision 1112 - Directory Listing
Modified Thu Apr 19 06:31:49 2007 UTC (15 years, 11 months ago) by jongui

Made some updates to the guide.

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Revision 1111 - Directory Listing
Modified Thu Apr 19 05:28:19 2007 UTC (15 years, 11 months ago) by jongui

Some clean up.

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Revision 1110 - Directory Listing
Modified Thu Apr 19 05:24:28 2007 UTC (15 years, 11 months ago) by jongui

Some test for the logo.

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Revision 1109 - Directory Listing
Modified Thu Apr 19 04:21:43 2007 UTC (15 years, 11 months ago) by btully

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Revision 1108 - Directory Listing
Modified Thu Apr 19 04:02:11 2007 UTC (15 years, 11 months ago) by jongui

Added modules that allows logos (i.e. access logo) to be inserted together with the rendered object. An example on how to use the 'Logo' class has also been provided.

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Revision 1107 - Directory Listing
Modified Thu Apr 19 02:14:18 2007 UTC (15 years, 11 months ago) by gross

Small bug in ReadMeh call fixed.
Test for typ of verbose argument in pdetools.SaddlePointSolver added.

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Revision 1106 - Directory Listing
Modified Thu Apr 19 01:54:57 2007 UTC (15 years, 11 months ago) by gross

I take it all back! Ignore the last check in.

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Revision 1105 - Directory Listing
Modified Thu Apr 19 01:10:49 2007 UTC (15 years, 11 months ago) by gross

The modification fixes a problem with the garbage collection in python. 
The problem seems that a default value of a method argument is seen as
being dependend on the the instance of the class. This produces a
circular dependence and can stop the garbage collection to delete the
object. The situation becomes in particulary bad if the class provides a
__del__ method as it is not clear where to break the circle.

We need to revisit all python classes in escript & Co to remove this
possible problem. 

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Revision 1104 - Directory Listing
Modified Wed Apr 18 04:32:35 2007 UTC (15 years, 11 months ago) by jongui

Removed test for reading escript objects directly using 'setData'. There seems to be a problem with the usage of memory.

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Revision 1103 - Directory Listing
Modified Wed Apr 18 04:31:06 2007 UTC (15 years, 11 months ago) by jongui

Some updates.

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Revision 1102 - Directory Listing
Modified Tue Apr 17 07:16:49 2007 UTC (15 years, 11 months ago) by jongui

some cleanup.

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Revision 1101 - Directory Listing
Modified Tue Apr 17 07:11:02 2007 UTC (15 years, 11 months ago) by jongui

Added some test for reading escript objects.

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Revision 1100 - Directory Listing
Modified Tue Apr 17 05:36:24 2007 UTC (15 years, 11 months ago) by jongui

Fixed the problem related to the use of point and cell data. Both point and cell data should now be able to work properly together. i.e. plotting a velocity field using 'vector point data' but coloring the arrows using 'scalar cell data'.

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Revision 1099 - Directory Listing
Modified Tue Apr 17 01:45:08 2007 UTC (15 years, 11 months ago) by jongui

Upated some examples.

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Revision 1098 - Directory Listing
Modified Mon Apr 16 23:15:23 2007 UTC (15 years, 11 months ago) by gross

add a few #pragma ivdep which should speed up MV but cannot confiirm this on Pentium

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Revision 1097 - Directory Listing
Modified Mon Apr 16 23:03:55 2007 UTC (15 years, 11 months ago) by jongui

Added more examples reading directly from escript objects.

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Revision 1095 - Directory Listing
Modified Mon Apr 16 06:32:24 2007 UTC (15 years, 11 months ago) by jongui

Added some example scripts reading directly from escript objects.

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Revision 1094 - Directory Listing
Modified Mon Apr 16 06:04:25 2007 UTC (15 years, 11 months ago) by jongui

Fixed the bug related to the use of the 'setData' method in the DataCollector. Reading directly from escript objects should now work.

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Revision 1093 - Directory Listing
Modified Sun Apr 15 23:58:53 2007 UTC (15 years, 11 months ago) by jongui

Fixed a minor bug related to clipping vector and tensor data.

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Revision 1092 - Directory Listing
Modified Fri Apr 13 03:39:49 2007 UTC (15 years, 11 months ago) by gross

the useless profilinf for data.cpp removed (doDebug=yes should work again)
and a small bug in the gmsh reader fixed.

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Revision 1091 - Directory Listing
Modified Fri Apr 13 01:26:22 2007 UTC (15 years, 11 months ago) by jongui

More updates to the guide.

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Revision 1086 - Directory Listing
Modified Thu Apr 12 05:54:14 2007 UTC (15 years, 11 months ago) by jongui

Performed some cleanup.

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Revision 1085 - Directory Listing
Modified Thu Apr 12 05:36:31 2007 UTC (15 years, 11 months ago) by jongui

More minor fixes to Camera.

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Revision 1084 - Directory Listing
Modified Thu Apr 12 05:19:22 2007 UTC (15 years, 11 months ago) by jongui

Updated the guide and fixed a minor bug with the use of the Camera.

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Revision 1083 - Directory Listing
Modified Thu Apr 12 01:15:01 2007 UTC (15 years, 11 months ago) by ksteube

Install prefix: can now use

	scons prefix=/some/dir

to build and install into another directory.

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Revision 1082 - Directory Listing
Modified Wed Apr 11 22:33:52 2007 UTC (15 years, 11 months ago) by jongui

Made some updates to the guide.

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Revision 1081 - Directory Listing
Modified Wed Apr 11 06:13:46 2007 UTC (15 years, 11 months ago) by jongui

Made some updates to the guide.

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Revision 1080 - Directory Listing
Modified Wed Apr 11 06:07:30 2007 UTC (15 years, 11 months ago) by gross

small typo fixed.

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Revision 1079 - Directory Listing
Modified Tue Apr 10 04:27:31 2007 UTC (15 years, 11 months ago) by jongui

Updated more epydocs and the user guide. At this stage, a DataCollector should only be used to read either point data or cell data but not both. If both point and cell data are read using the same DataCollector, the object rendered may be incorrect.

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Revision 1078 - Directory Listing
Modified Thu Apr 5 06:18:47 2007 UTC (15 years, 11 months ago) by jongui

Added and updated some epydocs.

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Revision 1077 - Directory Listing
Modified Wed Apr 4 13:31:39 2007 UTC (15 years, 11 months ago) by jongui

There seems to be some problems with regards to reading data directly from an ESCRIPT object using the 'setData' method in the DataCollector. Please avoid using this method at this stage.

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Revision 1076 - Directory Listing
Modified Wed Apr 4 06:40:33 2007 UTC (15 years, 11 months ago) by jongui

Some updates.

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Revision 1075 - Directory Listing
Modified Tue Apr 3 02:47:39 2007 UTC (15 years, 11 months ago) by jongui

Some minor cleanup.