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revision 1756 by ksteube, Mon Sep 8 01:45:46 2008 UTC revision 2364 by gross, Fri Apr 3 08:06:30 2009 UTC
# Line 1  Line 1 
1  #         Copyright 2006 by ACcESS MNRF  
2    ########################################################
3    #
4    # Copyright (c) 2003-2008 by University of Queensland
5    # Earth Systems Science Computational Center (ESSCC)
6    # http://www.uq.edu.au/esscc
7    #
8    # Primary Business: Queensland, Australia
9    # Licensed under the Open Software License version 3.0
10    # http://www.opensource.org/licenses/osl-3.0.php
11  #  #
12  #              http://www.access.edu.au  ########################################################
13  #       Primary Business: Queensland, Australia  
 #  Licensed under the Open Software License version 3.0  
 #     http://www.opensource.org/licenses/osl-3.0.php  
14    
15  EnsureSConsVersion(0,96,91)  EnsureSConsVersion(0,96,91)
16  EnsurePythonVersion(2,3)  EnsurePythonVersion(2,3)
17    
18  import sys, os, re, socket  import sys, os, re, socket, platform, stat
19    
20  # Add our extensions  # Add our extensions
21  if os.path.isdir('scons'): sys.path.append('scons')  if os.path.isdir('scons'): sys.path.append('scons')
# Line 30  prefix = ARGUMENTS.get('prefix', Dir('#. Line 37  prefix = ARGUMENTS.get('prefix', Dir('#.
37  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])
38  tmp = os.path.join("scons",hostname+"_options.py")  tmp = os.path.join("scons",hostname+"_options.py")
39  options_file = ARGUMENTS.get('options_file', tmp)  options_file = ARGUMENTS.get('options_file', tmp)
40  if not os.path.isfile(options_file): options_file = False  if not os.path.isfile(options_file):
41  else: print "Options file is", options_file    options_file = False
42      print "Options file not found (expected '%s')" % tmp
43    else:
44      print "Options file is", options_file
45    
46  # Load options file and command-line arguments  # Load options file and command-line arguments
47  opts = Options(options_file, ARGUMENTS)  opts = Options(options_file, ARGUMENTS)
# Line 50  opts.AddOptions( Line 60  opts.AddOptions(
60    BoolOption('usedebug', 'Do you want a debug build?', 'no'),    BoolOption('usedebug', 'Do you want a debug build?', 'no'),
61    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),
62    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),
63      ('win_cc_name', 'windows C compiler name if needed', 'msvc'),
64    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below
65    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),
66    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),
# Line 58  opts.AddOptions( Line 69  opts.AddOptions(
69    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),
70    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),
71    ('cc_extra', 'Extra C/C++ flags', ''),    ('cc_extra', 'Extra C/C++ flags', ''),
72      ('ld_extra', 'Extra linker flags', ''),
73    ('sys_libs', 'System libraries to link with', []),    ('sys_libs', 'System libraries to link with', []),
74    ('ar_flags', 'Static library archiver flags to use', ''),    ('ar_flags', 'Static library archiver flags to use', ''),
75    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'yes'),    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'no'),
76    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'yes'),    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),
77      BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),
78      ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),
79  # Python  # Python
80    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),
81    ('python_lib_path', 'Path to Python libs', usr_lib),    ('python_lib_path', 'Path to Python libs', usr_lib),
# Line 84  opts.AddOptions( Line 98  opts.AddOptions(
98    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),
99    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),
100    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),
101      ('mpi_flavour','Type of MPI execution environment','none'),
102  # ParMETIS  # ParMETIS
103    BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),    BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),
104    ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),    ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),
# Line 106  opts.AddOptions( Line 121  opts.AddOptions(
121    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),
122    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),
123    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),
124    # Silo
125      BoolOption('usesilo', 'switch on/off the usage of Silo', 'yes'),
126      ('silo_path', 'Path to Silo includes', '/usr/include'),
127      ('silo_lib_path', 'Path to Silo libs', usr_lib),
128      ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
129  # AMD (used by UMFPACK)  # AMD (used by UMFPACK)
130    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),
131    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('amd_lib_path', 'Path to AMD libs', usr_lib),
# Line 113  opts.AddOptions( Line 133  opts.AddOptions(
133  # BLAS (used by UMFPACK)  # BLAS (used by UMFPACK)
134    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),
135    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    ('blas_lib_path', 'Path to BLAS libs', usr_lib),
136    ('blas_libs', 'BLAS libraries to link with', ['blas'])    ('blas_libs', 'BLAS libraries to link with', ['blas']),
137    # An option for specifying the compiler tools set (see windows branch).
138      ('tools_names', 'allow control over the tools in the env setup', ['intelc']),
139    # finer control over library building, intel aggressive global optimisation
140    # works with dynamic libraries on windows.
141      ('share_esysUtils', 'control static or dynamic esysUtils lib', False),
142      ('share_paso', 'control static or dynamic paso lib', False)
143  )  )
144    
145  ############ Specify which compilers to use ####################  ############ Specify which compilers to use ####################
# Line 122  opts.AddOptions( Line 148  opts.AddOptions(
148  # failing to find the compilers.  This warning can be safely ignored.  # failing to find the compilers.  This warning can be safely ignored.
149    
150  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
151        env = Environment(tools = ['default', 'msvc'], options = opts)        env = Environment(options = opts)
152          env = Environment(tools = ['default'] + env['tools_names'],
153                            options = opts)
154  else:  else:
155     if socket.gethostname().split('.')[0] == 'service0':     if socket.gethostname().split('.')[0] == 'service0':
156        env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default', 'intelc'], options = opts)
# Line 143  if env['useMPI']: env['usempi'] = 1 Line 171  if env['useMPI']: env['usempi'] = 1
171  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)
172  # For both C and C++ you get: cc_flags and either the optim flags or debug flags  # For both C and C++ you get: cc_flags and either the optim flags or debug flags
173    
174    sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.
175    
176  if env["CC"] == "icc":  if env["CC"] == "icc":
177    # Intel compilers    # Intel compilers
178    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
179    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"
180    cc_debug      = "-g -O0 -UDOASSERT -DDOPROF -DBOUNDS_CHECK"    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
181    omp_optim     = "-openmp -openmp_report0"    omp_optim     = "-openmp -openmp_report0"
182    omp_debug     = "-openmp -openmp_report0"    omp_debug     = "-openmp -openmp_report0"
183    omp_libs      = ['guide', 'pthread']    omp_libs      = ['guide', 'pthread']
184    pedantic      = ""    pedantic      = ""
185      fatalwarning      = ""        # Switch to turn warnings into errors
186      sysheaderopt      = ""
187  elif env["CC"] == "gcc":  elif env["CC"] == "gcc":
188    # GNU C on any system    # GNU C on any system
189    cc_flags      = "-fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER"    cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"
190    #the long long warning occurs on the Mac
191    cc_optim      = "-O3"    cc_optim      = "-O3"
192    cc_debug      = "-g -O0 -UDOASSERT -DDOPROF -DBOUNDS_CHECK"    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
193    omp_optim     = ""    omp_optim     = "-fopenmp"
194    omp_debug     = ""    omp_debug     = "-fopenmp"
195    omp_libs      = []    omp_libs      = ['gomp']
196    pedantic      = "-pedantic-errors -Wno-long-long"    pedantic      = "-pedantic-errors -Wno-long-long"
197      fatalwarning      = "-Werror"
198      sysheaderopt      = "-isystem "
199  elif env["CC"] == "cl":  elif env["CC"] == "cl":
200    # Microsoft Visual C on Windows    # Microsoft Visual C on Windows
201    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"
# Line 170  elif env["CC"] == "cl": Line 205  elif env["CC"] == "cl":
205    omp_debug     = ""    omp_debug     = ""
206    omp_libs      = []    omp_libs      = []
207    pedantic      = ""    pedantic      = ""
208      fatalwarning      = ""
209      sysheaderopt      = ""
210    elif env["CC"] == "icl":
211      # intel C on Windows, see windows_intelc_options.py for a start
212      pedantic      = ""
213      fatalwarning      = ""
214      sysheaderopt      = ""
215    
216    
217  # If not specified in hostname_options.py then set them here  # If not specified in hostname_options.py then set them here
218  if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags
# Line 179  if env["omp_optim"]    == "-DEFAULT_4": env Line 222  if env["omp_optim"]    == "-DEFAULT_4": env
222  if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug
223  if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs
224    
225    #set up the autolazy values
226    if env['forcelazy']    != "leave_alone":
227      if env['forcelazy'] == 'on':
228        env.Append(CPPDEFINES='FAUTOLAZYON')
229      else:
230         if env['forcelazy'] == 'off':
231        env.Append(CPPDEFINES='FAUTOLAZYOFF')
232    
233  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty
234  if not env["useopenmp"]:  if not env["useopenmp"]:
235    env['omp_optim'] = ""    env['omp_optim'] = ""
# Line 192  if env['omp_optim'] == "" and env['omp_d Line 243  if env['omp_optim'] == "" and env['omp_d
243  try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']  try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']
244  except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1  except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1
245    
246    try: env['ENV']['ESCRIPT_NUM_THREADS'] = os.environ['ESCRIPT_NUM_THREADS']
247    except KeyError: pass
248    
249    try: env['ENV']['ESCRIPT_NUM_PROCS'] = os.environ['ESCRIPT_NUM_PROCS']
250    except KeyError: pass
251    
252    try: env['ENV']['ESCRIPT_NUM_NODES'] = os.environ['ESCRIPT_NUM_NODES']
253    except KeyError: pass
254    
255    try: env['ENV']['ESCRIPT_HOSTFILE'] = os.environ['ESCRIPT_HOSTFILE']
256    except KeyError: pass
257    
258  try: env['ENV']['PATH'] = os.environ['PATH']  try: env['ENV']['PATH'] = os.environ['PATH']
259  except KeyError: pass  except KeyError: pass
260    
# Line 239  env.Append(CPPPATH     = [Dir('include')]) Line 302  env.Append(CPPPATH     = [Dir('include')])
302  # Add cc option -L<Escript>/trunk/lib  # Add cc option -L<Escript>/trunk/lib
303  env.Append(LIBPATH      = [Dir(env['libinstall'])])  env.Append(LIBPATH      = [Dir(env['libinstall'])])
304    
 env.Append(CPPDEFINES = ['ESCRIPT_EXPORTS', 'FINLEY_EXPORTS'])  
   
305  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])
306    if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])
307    
308  if env['usepedantic']: env.Append(CCFLAGS = pedantic)  if env['usepedantic']: env.Append(CCFLAGS = pedantic)
309    
310  # MS Windows  # MS Windows
311  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
312    env.PrependENVPath('PATH',    [env['boost_lib_path']])    env.AppendENVPath('PATH', [env['boost_lib_path']])
313    env.PrependENVPath('PATH',    [env['libinstall']])    env.AppendENVPath('PATH', [env['libinstall']])
314      if not env['share_esysUtils'] :
315        env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
316      if not env['share_paso'] :
317        env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
318    
319    if env['usenetcdf']:    if env['usenetcdf']:
320      env.PrependENVPath('PATH',  [env['netCDF_lib_path']])      env.AppendENVPath('PATH',   [env['netCDF_lib_path']])
321    
322  env.Append(ARFLAGS = env['ar_flags'])  env.Append(ARFLAGS = env['ar_flags'])
323    
# Line 279  conf = Configure(clone_env(env)) Line 346  conf = Configure(clone_env(env))
346    
347  # Test that the compiler is working  # Test that the compiler is working
348  if not conf.CheckFunc('printf'):  if not conf.CheckFunc('printf'):
349    print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])     print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])
350    sys.exit(1)     sys.exit(1)
351    
352  if not conf.CheckFunc('gethostname'):  if conf.CheckFunc('gethostname'):
353    env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])    conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])
354    
355  ############ python libraries (required) #######################  ############ python libraries (required) #######################
356    
357  conf.env.AppendUnique(CPPPATH       = [env['python_path']])  
358    if not sysheaderopt =="":
359      conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])
360    else:
361      conf.env.AppendUnique(CPPPATH     = [env['python_path']])
362    
363  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])
364  conf.env.AppendUnique(LIBS      = [env['python_libs']])  conf.env.AppendUnique(LIBS      = [env['python_libs']])
365    
366    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs
367    conf.env.PrependENVPath('PYTHONPATH', prefix)
368    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
369    
370  if not conf.CheckCHeader('Python.h'):  if not conf.CheckCHeader('Python.h'):
371    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])
372    sys.exit(1)    sys.exit(1)
373  if not conf.CheckFunc('Py_Main'):  if not conf.CheckFunc('Py_Exit'):
374    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])
375    sys.exit(1)    sys.exit(1)
376    
377  ############ boost (required) ##################################  ############ boost (required) ##################################
378    
379  conf.env.AppendUnique(CPPPATH       = [env['boost_path']])  if not sysheaderopt =="":
380    # This is required because we can't -isystem /usr/system because it breaks std includes
381      if os.path.normpath(env['boost_path']) =="/usr/include":
382        conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))
383      else:
384        conf.env.Append(CCFLAGS=sysheaderopt+env['boost_path'])
385    else:
386      conf.env.AppendUnique(CPPPATH     = [env['boost_path']])
387    
388  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])
389  conf.env.AppendUnique(LIBS      = [env['boost_libs']])  conf.env.AppendUnique(LIBS      = [env['boost_libs']])
390    
391    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs
392    #ensure that our path entries remain at the front
393    conf.env.PrependENVPath('PYTHONPATH', prefix)
394    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
395    
396  if not conf.CheckCXXHeader('boost/python.hpp'):  if not conf.CheckCXXHeader('boost/python.hpp'):
397    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])
398    sys.exit(1)    sys.exit(1)
399    
400  if not conf.CheckFunc('PyObject_SetAttr'):  if not conf.CheckFunc('PyObject_SetAttr'):
401    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])
402    sys.exit(1)    sys.exit(1)
# Line 335  if env['usenetcdf']: Line 425  if env['usenetcdf']:
425    conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])    conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])
426    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])
427    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])
428      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs
429      #ensure that our path entries remain at the front
430      conf.env.PrependENVPath('PYTHONPATH', prefix)
431      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
432    
433  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0
434  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0
# Line 355  if env['usepapi']: Line 449  if env['usepapi']:
449    conf.env.AppendUnique(CPPPATH = [env['papi_path']])    conf.env.AppendUnique(CPPPATH = [env['papi_path']])
450    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])
451    conf.env.AppendUnique(LIBS    = [env['papi_libs']])    conf.env.AppendUnique(LIBS    = [env['papi_libs']])
452      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs
453      #ensure that our path entries remain at the front
454      conf.env.PrependENVPath('PYTHONPATH', prefix)
455      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
456    
457  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0
458  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0
# Line 375  if env['usemkl']: Line 473  if env['usemkl']:
473    conf.env.AppendUnique(CPPPATH = [env['mkl_path']])    conf.env.AppendUnique(CPPPATH = [env['mkl_path']])
474    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])
475    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])
476      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs
477      #ensure that our path entries remain at the front
478      conf.env.PrependENVPath('PYTHONPATH', prefix)
479      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
480    
481  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0
482  if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckFunc('pardiso'): env['usemkl'] = 0
483    
484  # Add MKL to environment env if it was found  # Add MKL to environment env if it was found
485  if env['usemkl']:  if env['usemkl']:
# Line 402  if env['useumfpack']: Line 504  if env['useumfpack']:
504    conf.env.AppendUnique(CPPPATH = [env['blas_path']])    conf.env.AppendUnique(CPPPATH = [env['blas_path']])
505    conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])
506    conf.env.AppendUnique(LIBS    = [env['blas_libs']])    conf.env.AppendUnique(LIBS    = [env['blas_libs']])
507      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs
508      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs
509      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs
510      #ensure that our path entries remain at the front
511      conf.env.PrependENVPath('PYTHONPATH', prefix)
512      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
513    
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
514  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0
515    if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0
516    # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?
517    
518  # Add UMFPACK to environment env if it was found  # Add UMFPACK to environment env if it was found
519  if env['useumfpack']:  if env['useumfpack']:
# Line 413  if env['useumfpack']: Line 522  if env['useumfpack']:
522  else:  else:
523    conf.Finish()    conf.Finish()
524    
525    ############ Silo (optional) ###################################
526    
527    if env['usesilo']:
528      conf = Configure(clone_env(env))
529      conf.env.AppendUnique(CPPPATH = [env['silo_path']])
530      conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])
531      conf.env.AppendUnique(LIBS = [env['silo_libs']])
532      if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0
533      if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0
534      conf.Finish()
535    
536    # Add the path to Silo to environment env if it was found.
537    # Note that we do not add the libs since they are only needed for the
538    # escriptreader library and tools.
539    if env['usesilo']:
540      env.AppendUnique(CPPPATH = [env['silo_path']])
541      env.AppendUnique(LIBPATH = [env['silo_lib_path']])
542      env.Append(CPPDEFINES = ['HAVE_SILO'])
543    
544  ############ Add the compiler flags ############################  ############ Add the compiler flags ############################
545    
546  # Enable debug by choosing either cc_debug or cc_optim  # Enable debug by choosing either cc_debug or cc_optim
# Line 427  else: Line 555  else:
555  env.Append(CCFLAGS      = env['cc_flags'])  env.Append(CCFLAGS      = env['cc_flags'])
556  env.Append(LIBS         = [env['omp_libs']])  env.Append(LIBS         = [env['omp_libs']])
557    
558    ############ Add some custom builders ##########################
559    
560    py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
561    env.Append(BUILDERS = {'PyCompile' : py_builder});
562    
563    runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
564    env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
565    
566    runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
567    env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
568    
569  ############ MPI (optional) ####################################  ############ MPI (optional) ####################################
570    if not env['usempi']: env['mpi_flavour']='none'
571    
572  # Create a modified environment for MPI programs (identical to env if usempi=no)  # Create a modified environment for MPI programs (identical to env if usempi=no)
573  env_mpi = clone_env(env)  env_mpi = clone_env(env)
# Line 436  env_mpi = clone_env(env) Line 576  env_mpi = clone_env(env)
576  conf = Configure(clone_env(env_mpi))  conf = Configure(clone_env(env_mpi))
577    
578  if env_mpi['usempi']:  if env_mpi['usempi']:
579      VALID_MPIs=[ "MPT", "MPICH", "OPENMPI", "INTELMPI" ]
580      if not env_mpi['mpi_flavour'] in VALID_MPIs:
581          raise ValueError,"MPI is enabled but mpi_flavour = %s is not a valid key from %s."%( env_mpi['mpi_flavour'],VALID_MPIs)
582    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])
583    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])
584    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])
585      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs
586      #ensure that our path entries remain at the front
587      conf.env.PrependENVPath('PYTHONPATH', prefix)
588      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
589    
590  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0
591  if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  # if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0
592    
593  # Add MPI to environment env_mpi if it was found  # Add MPI to environment env_mpi if it was found
594  if env_mpi['usempi']:  if env_mpi['usempi']:
# Line 452  else: Line 599  else:
599    
600  env['usempi'] = env_mpi['usempi']  env['usempi'] = env_mpi['usempi']
601    
602    
603  ############ ParMETIS (optional) ###############################  ############ ParMETIS (optional) ###############################
604    
605  # Start a new configure environment that reflects what we've already found  # Start a new configure environment that reflects what we've already found
# Line 463  if env_mpi['useparmetis']: Line 611  if env_mpi['useparmetis']:
611    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])
612    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])
613    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])
614      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs
615      #ensure that our path entries remain at the front
616      conf.env.PrependENVPath('PYTHONPATH', prefix)
617      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
618    
619  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0
620  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0
# Line 476  else: Line 628  else:
628    
629  env['useparmetis'] = env_mpi['useparmetis']  env['useparmetis'] = env_mpi['useparmetis']
630    
631    ############ Now we switch on Warnings as errors ###############
632    
633    #this needs to be done after configuration because the scons test files have warnings in them
634    
635    if ((fatalwarning != "") and (env['usewarnings'])):
636      env.Append(CCFLAGS        = fatalwarning)
637      env_mpi.Append(CCFLAGS        = fatalwarning)
638    
639  ############ Summarize our environment #########################  ############ Summarize our environment #########################
640    
641  print ""  print ""
# Line 491  if env['usemkl']: print "  Using MKL" Line 651  if env['usemkl']: print "  Using MKL"
651  else: print "   Not using MKL"  else: print "   Not using MKL"
652  if env['useumfpack']: print "   Using UMFPACK"  if env['useumfpack']: print "   Using UMFPACK"
653  else: print "   Not using UMFPACK"  else: print "   Not using UMFPACK"
654    if env['usesilo']: print "  Using Silo"
655    else: print "   Not using Silo"
656  if env['useopenmp']: print "    Using OpenMP"  if env['useopenmp']: print "    Using OpenMP"
657  else: print "   Not using OpenMP"  else: print "   Not using OpenMP"
658  if env['usempi']: print "   Using MPI"  if env['usempi']: print "   Using MPI (flavour = %s)"%env['mpi_flavour']
659  else: print "   Not using MPI"  else: print "   Not using MPI"
660  if env['useparmetis']: print "  Using ParMETIS"  if env['useparmetis']: print "  Using ParMETIS"
661  else: print "   Not using ParMETIS (requires MPI)"  else: print "   Not using ParMETIS (requires MPI)"
# Line 502  else: print "  Not using PAPI" Line 664  else: print "  Not using PAPI"
664  if env['usedebug']: print " Compiling for debug"  if env['usedebug']: print " Compiling for debug"
665  else: print "   Not compiling for debug"  else: print "   Not compiling for debug"
666  print " Installing in", prefix  print " Installing in", prefix
667    if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"
668    else: print "   Not treating warnings as errors"
669  print ""  print ""
670    
671  ############ Delete option-dependent files #####################  ############ Delete option-dependent files #####################
672    
673  Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.debug")))
674  Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.mpi")))
675  Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.openmp")))
676  if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))  Execute(Delete(os.path.join(env['libinstall'],"pyversion")))
677    Execute(Delete(os.path.join(env['libinstall'],"buildvars")))
678    if not env['usempi']: Execute(Delete(os.path.join(env['libinstall'],"pythonMPI")))
679    
 ############ Add some custom builders ##########################  
680    
681  py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  ############ Build the subdirectories ##########################
 env.Append(BUILDERS = {'PyCompile' : py_builder});  
682    
683  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  from grouptest import *
 env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  
684    
685  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  TestGroups=[]
 env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  
   
 ############ Build the subdirectories ##########################  
686    
687  Export(["env", "env_mpi", "clone_env"])  Export(
688      ["env",
689       "env_mpi",
690       "clone_env",
691       "IS_WINDOWS_PLATFORM",
692       "TestGroups"
693       ]
694      )
695    
696  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
697    env.SConscript(dirs = ['tools/libescriptreader/src'], build_dir='build/$PLATFORM/tools/libescriptreader', duplicate=0)
698  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)
699  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)
700  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)
# Line 537  env.SConscript(dirs = ['pyvisi/py_src'], Line 705  env.SConscript(dirs = ['pyvisi/py_src'],
705  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)
706  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)
707  env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)  env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)
708    env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)
709    
710    
711  ############ Remember what optimizations we used ###############  ############ Remember what optimizations we used ###############
712    
713  remember_list = []  remember_list = []
714    
715  if env['usedebug']:  if env['usedebug']:
716    remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.debug"), None, Touch('$TARGET'))
717    
718  if env['usempi']:  if env['usempi']:
719    remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.mpi"), None, Touch('$TARGET'))
720    
721  if env['omp_optim'] != '':  if env['useopenmp']:
722    remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.openmp"), None, Touch('$TARGET'))
723    
724  env.Alias('remember_options', remember_list)  env.Alias('remember_options', remember_list)
725    
726    
727    ############### Record python interpreter version ##############
728    
729    if not IS_WINDOWS_PLATFORM:
730      versionstring="Python "+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])
731      os.system("echo "+versionstring+" > "+os.path.join(env['libinstall'],"pyversion"))
732    
733    ############## Populate the buildvars file #####################
734    
735    buildvars=open(os.path.join(env['libinstall'],'buildvars'),'w')
736    buildvars.write('python='+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+'\n')
737    
738    # Find the boost version by extracting it from version.hpp
739    boosthpp=open(os.path.join(env['boost_path'],'boost','version.hpp'))
740    boostversion='unknown'
741    try:
742        for line in boosthpp:
743            ver=re.match(r'#define BOOST_VERSION (\d+)',line)
744            if ver:
745                boostversion=ver.group(1)
746    except StopIteration:
747        pass
748    buildvars.write("boost="+boostversion+"\n")
749    buildvars.write("svn_revision="+str(global_revision)+"\n")
750    out="usedebug="
751    if env['usedebug']:
752        out+="y"
753    else:
754        out+="n"
755    out+="\nusempi="
756    if env['usempi']:
757        out+="y"
758    else:
759        out+="n"
760    out+="\nuseopenmp="
761    if env['useopenmp']:
762        out+="y"
763    else:
764        out+="n"
765    buildvars.write(out+"\n")
766    buildvars.write("mpi_flavour="+env['mpi_flavour']+'\n')
767    
768    buildvars.close()
769    
770    
771  ############ Targets to build and install libraries ############  ############ Targets to build and install libraries ############
772    
773  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))
# Line 578  build_all_list += ['build_paso'] Line 793  build_all_list += ['build_paso']
793  build_all_list += ['build_escript']  build_all_list += ['build_escript']
794  build_all_list += ['build_finley']  build_all_list += ['build_finley']
795  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']
796  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_finley_wrapper']  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_escript_wrapper']
797    if env['usesilo']:  build_all_list += ['target_escript2silo']
798  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
799    
800  install_all_list = []  install_all_list = []
# Line 591  install_all_list += ['target_install_pyv Line 807  install_all_list += ['target_install_pyv
807  install_all_list += ['target_install_modellib_py']  install_all_list += ['target_install_modellib_py']
808  install_all_list += ['target_install_pycad_py']  install_all_list += ['target_install_pycad_py']
809  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']
810  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_finley_wrapper']  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_escript_wrapper']
811    if env['usesilo']:  install_all_list += ['target_install_escript2silo']
812  install_all_list += ['remember_options']  install_all_list += ['remember_options']
813  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
814    
# Line 604  env.Alias('build_cppunittest', ['target_ Line 821  env.Alias('build_cppunittest', ['target_
821  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])
822  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])
823  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])
824    env.Alias('build_full',['install_all','build_tests','build_py_tests'])
825    
826  ############ Targets to build the documentation ################  ############ Targets to build the documentation ################
827    
828  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html','install_pdf'])
829    
830    if not IS_WINDOWS_PLATFORM:
831       try:
832        utest=open("utest.sh","w")
833        build_platform=os.name      #Sometimes Mac python says it is posix
834        if (build_platform=='posix') and platform.system()=="Darwin":
835            build_platform='darwin'
836        utest.write(GroupTest.makeHeader(build_platform))
837        for tests in TestGroups:
838            utest.write(tests.makeString())
839        utest.close()
840        os.chmod("utest.sh",stat.S_IRWXU|stat.S_IRGRP|stat.S_IXGRP|stat.S_IROTH|stat.S_IXOTH)
841        print "utest.sh written"
842       except IOError:
843        print "Error attempting to write unittests file."
844        sys.exit(1)
845    

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