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revision 1415 by ksteube, Thu Feb 21 04:57:17 2008 UTC revision 1811 by ksteube, Thu Sep 25 23:11:13 2008 UTC
# Line 1  Line 1 
1  #         Copyright 2006 by ACcESS MNRF  
2    ########################################################
3    #
4    # Copyright (c) 2003-2008 by University of Queensland
5    # Earth Systems Science Computational Center (ESSCC)
6    # http://www.uq.edu.au/esscc
7    #
8    # Primary Business: Queensland, Australia
9    # Licensed under the Open Software License version 3.0
10    # http://www.opensource.org/licenses/osl-3.0.php
11  #  #
12  #              http://www.access.edu.au  ########################################################
13  #       Primary Business: Queensland, Australia  
14  #  Licensed under the Open Software License version 3.0  
 #     http://www.opensource.org/licenses/osl-3.0.php  
   
 # top-level Scons configuration file for all esys13 modules  
 # Begin initialisation Section  
 # all of this section just intialises default environments and helper  
 # scripts. You shouldn't need to modify this section.  
15  EnsureSConsVersion(0,96,91)  EnsureSConsVersion(0,96,91)
16  EnsurePythonVersion(2,3)  EnsurePythonVersion(2,3)
17    
18    import sys, os, re, socket
19    
 #===============================================================  
 #   import tools:  
 import glob  
 import sys, os, re  
20  # Add our extensions  # Add our extensions
21  if sys.path.count('scons')==0: sys.path.append('scons')  if os.path.isdir('scons'): sys.path.append('scons')
22  import scons_extensions  import scons_extensions
23    
24  # We may also need to know where python's site-packages subdirectory lives  # Use /usr/lib64 if available, else /usr/lib
25  python_version = 'python%s.%s'%(sys.version_info[0],sys.version_info[1])  usr_lib = '/usr/lib'
26    if os.path.isfile('/usr/lib64/libc.so'): usr_lib = '/usr/lib64'
 #===============================================================  
   
 tools_prefix="/usr"  
   
 #==============================================================================================      
 #      
 #    get the installation prefix  
 #  
 prefix = ARGUMENTS.get('prefix', sys.prefix )  
   
 # We may also need to know where python's site-packages subdirectory lives  
 python_version = 'python%s.%s'%(sys.version_info[0],sys.version_info[1])  
 # Install as a standard python package in /usr/lib64 if available, else in /usr/lib  
 if os.path.isdir(  prefix+"/lib64/"+python_version+"/site-packages"):  
    sys_dir_packages =  prefix+"/lib64/"+python_version+"/site-packages/esys"  
    sys_dir_libraries = prefix+"/lib64"  
 else:  
    sys_dir_packages =  prefix+"/lib/"+python_version+"/site-packages/esys"  
    sys_dir_libraries = prefix+"/lib"  
   
 sys_dir_examples = prefix+"/share/doc/esys"  
27    
28  source_root = Dir('#.').abspath  # The string python2.4 or python2.5
29    python_version = 'python%s.%s' % (sys.version_info[0], sys.version_info[1])
 dir_packages = os.path.join(source_root,"esys")  
 dir_examples = os.path.join(source_root,"examples")  
 dir_libraries = os.path.join(source_root,"lib")  
   
 print "Source root is : ",source_root  
 print " Default packages local installation:    ", dir_packages  
 print " Default library local installation  ", dir_libraries  
 print " Default example local  installation:    ", dir_examples  
 print "Install prefix is: ", prefix  
 print " Default packages system installation:   ", sys_dir_packages  
 print " Default library system installation     ", sys_dir_libraries  
 print " Default example system installation:    ", sys_dir_examples  
   
 #==============================================================================================      
   
 # Default options and options help text  
 # These are defaults and can be overridden using command line arguments or an options file.  
 # if the options_file or ARGUMENTS do not exist then the ones listed as default here are used  
 # DO NOT CHANGE THEM HERE  
 # Where to install?  
 #==============================================================================================      
 #      
 #    get the options file if present:  
 #  
 options_file = ARGUMENTS.get('options_file','')  
   
 if not os.path.isfile(options_file) :  
     options_file = False  
   
 if not options_file :  
    import socket  
    hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  
    tmp = os.path.join("scons",hostname+"_options.py")  
   
    if os.path.isfile(tmp) :  
       options_file = tmp  
30    
31    # MS Windows support, many thanks to PH
32  IS_WINDOWS_PLATFORM = (os.name== "nt")  IS_WINDOWS_PLATFORM = (os.name== "nt")
33    
34  # If you're not going to tell me then......  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)
 # FIXME: add one for the altix too.  
 if not options_file :  
    if IS_WINDOWS_PLATFORM :  
       options_file = "scons/windows_mscv71_options.py"  
    else:  
       options_file = "scons/linux_gcc_eg_options.py"  
35    
36  # and load it  # Read configuration options from file scons/<hostname>_options.py
37  opts = Options(options_file, ARGUMENTS)  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])
38  #================================================================  tmp = os.path.join("scons",hostname+"_options.py")
39  #  options_file = ARGUMENTS.get('options_file', tmp)
40  #   check if UMFPACK is installed on the system:  if not os.path.isfile(options_file): options_file = False
41  #  else: print "Options file is", options_file
 uf_root=None  
 for i in [ 'UMFPACK', 'umfpack', 'ufsparse', 'UFSPARSE']:  
    if os.path.isdir(os.path.join(tools_prefix,'include',i)):  
        uf_root=i  
        print i," is used form ",tools_prefix  
        break  
 if not uf_root==None:  
    umf_path_default=os.path.join(tools_prefix,'include',uf_root)  
    umf_lib_path_default=os.path.join(tools_prefix,'lib')  
    umf_libs_default=['umfpack']  
    amd_path_default=os.path.join(tools_prefix,'include',uf_root)  
    amd_lib_path_default=os.path.join(tools_prefix,'lib')  
    amd_libs_default=['amd']  
    ufc_path_default=os.path.join(tools_prefix,'include',uf_root)  
 else:  
    umf_path_default=None  
    umf_lib_path_default=None  
    umf_libs_default=None  
    amd_path_default=None  
    amd_lib_path_default=None  
    amd_libs_default=None  
    ufc_path_default=None  
 #  
 #==========================================================================  
 #  
 #    python installation:  
 #  
 python_path_default=os.path.join(tools_prefix,'include','python%s.%s'%(sys.version_info[0],sys.version_info[1]))  
 python_lib_path_default=os.path.join(tools_prefix,'lib')  
 python_lib_default="python%s.%s"%(sys.version_info[0],sys.version_info[1])  
   
 #==========================================================================  
 #  
 #    boost installation:  
 #  
 boost_path_default=os.path.join(tools_prefix,'include')  
 boost_lib_path_default=os.path.join(tools_prefix,'lib')  
 boost_lib_default=['boost_python']  
42    
43  #==========================================================================  # Load options file and command-line arguments
44  #  opts = Options(options_file, ARGUMENTS)
 #    check if netCDF is installed on the system:  
 #  
 netCDF_path_default=os.path.join(tools_prefix,'include','netcdf-3')  
 netCDF_lib_path_default=os.path.join(tools_prefix,'lib')  
45    
46  if os.path.isdir(netCDF_path_default) and os.path.isdir(netCDF_lib_path_default):  ############ Load build options ################################
      useNetCDF_default='yes'  
      netCDF_libs_default=[ 'netcdf_c++', 'netcdf' ]  
 else:  
      useNetCDF_default='no'  
      netCDF_path_default=None  
      netCDF_lib_path_default=None  
      netCDF_libs_default=None  
47    
 #==========================================================================  
 #  
 #  MPI:  
 #  
 if IS_WINDOWS_PLATFORM:  
    useMPI_default='no'  
    mpi_path_default=None  
    mpi_lib_path_default=None  
    mpi_libs_default=[]  
    mpi_run_default=None  
 else:  
    useMPI_default='no'  
    mpi_root='/usr/local'  
    mpi_path_default=os.path.join(mpi_root,'include')  
    mpi_lib_path_default=os.path.join(mpi_root,'lib')  
    mpi_libs_default=[ 'mpich' , 'pthread', 'rt' ]  
    mpi_run_default='mpiexec -np 1'  
 #  
 #==========================================================================  
 #  
 #    compile:  
 #  
 cc_flags_default='-O3 -std=c99 -ffast-math -fpic -Wno-unknown-pragmas -ansi'  
 cc_flags_debug_default='-g -O0 -ffast-math -std=c99 -fpic -Wno-unknown-pragmas -ansi'  
 cxx_flags_default='--no-warn -ansi'  
 cxx_flags_debug_default='--no-warn -ansi -DDOASSERT'  
   
 #==============================================================================================      
 # Default options and options help text  
 # These are defaults and can be overridden using command line arguments or an options file.  
 # if the options_file or ARGUMENTS do not exist then the ones listed as default here are used  
 # DO NOT CHANGE THEM HERE  
48  opts.AddOptions(  opts.AddOptions(
49  # Where to install esys stuff  # Where to install esys stuff
50    ('incinstall', 'where the esys headers will be installed',             Dir('#.').abspath+'/include'),    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),
51    ('libinstall', 'where the esys libraries will be installed',           dir_libraries),    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),
52    ('pyinstall', 'where the esys python modules will be installed',       dir_packages),    ('bininstall', 'where the esys binaries will be installed',            os.path.join(prefix,'bin')),
53    ('exinstall', 'where the esys examples will be installed',             dir_examples),    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),
54    ('sys_libinstall', 'where the system esys libraries will be installed',       sys_dir_libraries),    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),
   ('sys_pyinstall', 'where the system esys python modules will be installed',   sys_dir_packages),  
   ('sys_exinstall', 'where the system esys examples will be installed',         sys_dir_examples),  
   ('src_zipfile', 'the source zip file will be installed.',              Dir('#.').abspath+"/release/escript_src.zip"),  
   ('test_zipfile', 'the test zip file will be installed.',               Dir('#.').abspath+"/release/escript_tests.zip"),  
   ('src_tarfile', 'the source tar file will be installed.',              Dir('#.').abspath+"/release/escript_src.tar.gz"),  
   ('test_tarfile', 'the test tar file will be installed.',               Dir('#.').abspath+"/release/escript_tests.tar.gz"),  
   ('examples_tarfile', 'the examples tar file will be installed.',       Dir('#.').abspath+"/release/doc/escript_examples.tar.gz"),  
   ('examples_zipfile', 'the examples zip file will be installed.',       Dir('#.').abspath+"/release/doc/escript_examples.zip"),  
   ('guide_pdf', 'name of the user guide in pdf format',                  Dir('#.').abspath+"/release/doc/user/guide.pdf"),  
   ('api_epydoc', 'name of the epydoc api docs directory',                Dir('#.').abspath+"/release/doc/epydoc"),  
   ('guide_html', 'name of the directory for user guide in html format',  Dir('#.').abspath+"/release/doc/user/html"),  
   ('api_doxygen', 'name of the doxygen api docs directory',prefix+"/release/doc/doxygen"),  
55  # Compilation options  # Compilation options
56    BoolOption('dodebug', 'Do you want a debug build?', 'no'),    BoolOption('dodebug', 'For backwards compatibility', 'no'),
57    BoolOption('bounds_check', 'Do you want extra array bounds checking?', 'no'),    BoolOption('usedebug', 'Do you want a debug build?', 'no'),
58    ('options_file', "Optional file containing preferred options. Ignored if it doesn't exist (default: scons/<hostname>_options.py)", options_file),    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),
59    ('cc_defines','C/C++ defines to use', None),    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),
60    ('cc_flags','C compiler flags to use (Release build)', cc_flags_default),    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below
61    ('cc_flags_debug', 'C compiler flags to use (Debug build)', cc_flags_debug_default),    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),
62    ('cxx_flags', 'C++ compiler flags to use (Release build)', cxx_flags_default),    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),
63    ('cxx_flags_debug', 'C++ compiler flags to use (Debug build)', cxx_flags_debug_default),    ('cc_debug', 'C compiler debug flags to use', '-DEFAULT_3'),
64    ('omp_flags', 'OpenMP compiler flags to use (Release build)', ''),    ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),
65    ('omp_flags_debug', 'OpenMP compiler flags to use (Debug build)', ''),    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),
66    ('ar_flags', 'Static library archiver flags to use', None),    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),
67    ('sys_libs', 'System libraries to link with', None),    ('cc_extra', 'Extra C/C++ flags', ''),
68    ('tar_flags','flags for zip files','-c -z'),    ('ld_extra', 'Extra linker flags', ''),
69  # MKL    ('sys_libs', 'System libraries to link with', []),
70    PathOption('mkl_path', 'Path to MKL includes', None),    ('ar_flags', 'Static library archiver flags to use', ''),
71    PathOption('mkl_lib_path', 'Path to MKL libs', None),    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'yes'),
72    ('mkl_libs', 'MKL libraries to link with', None),    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'yes'),
 # SCSL  
   PathOption('scsl_path', 'Path to SCSL includes', None),  
   PathOption('scsl_lib_path', 'Path to SCSL libs', None),  
   ('scsl_libs', 'SCSL libraries to link with', None),  
   ('scsl_libs_MPI', 'SCSL libraries to link with for MPI build', None),  
 # UMFPACK  
   PathOption('ufc_path', 'Path to UFconfig includes', ufc_path_default),  
   PathOption('umf_path', 'Path to UMFPACK includes', umf_path_default),  
   PathOption('umf_lib_path', 'Path to UMFPACK libs', umf_lib_path_default),  
   ('umf_libs', 'UMFPACK libraries to link with', umf_libs_default),  
 # AMD (used by UMFPACK)  
   PathOption('amd_path', 'Path to AMD includes', amd_path_default),  
   PathOption('amd_lib_path', 'Path to AMD libs', amd_lib_path_default),  
   ('amd_libs', 'AMD libraries to link with', amd_libs_default),  
 # TRILINOS  
   PathOption('trilinos_path', 'Path to TRILINOS includes', None),  
   PathOption('trilinos_lib_path', 'Path to TRILINOS libs', None),  
   ('trilinos_libs', 'TRILINOS libraries to link with', None),  
 # BLAS  
   PathOption('blas_path', 'Path to BLAS includes', None),  
   PathOption('blas_lib_path', 'Path to BLAS libs', None),  
   ('blas_libs', 'BLAS libraries to link with', None),  
 # netCDF  
   ('useNetCDF', 'switch on/off the usage of netCDF', useNetCDF_default),  
   PathOption('netCDF_path', 'Path to netCDF includes', netCDF_path_default),  
   PathOption('netCDF_lib_path', 'Path to netCDF libs', netCDF_lib_path_default),  
   ('netCDF_libs', 'netCDF C++ libraries to link with', netCDF_libs_default),  
73  # Python  # Python
74  # locations of include files for python    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),
75  # FIXME: python_path should be python_inc_path and the same for boost etc.    ('python_lib_path', 'Path to Python libs', usr_lib),
76    PathOption('python_path', 'Path to Python includes', python_path_default),    ('python_libs', 'Python libraries to link with', [python_version]),
   PathOption('python_lib_path', 'Path to Python libs', python_lib_path_default),  
   ('python_lib', 'Python libraries to link with', python_lib_default),  
77    ('python_cmd', 'Python command', 'python'),    ('python_cmd', 'Python command', 'python'),
78  # Boost  # Boost
79    PathOption('boost_path', 'Path to Boost includes', boost_path_default),    ('boost_path', 'Path to Boost includes', '/usr/include'),
80    PathOption('boost_lib_path', 'Path to Boost libs', boost_lib_path_default),    ('boost_lib_path', 'Path to Boost libs', usr_lib),
81    ('boost_lib', 'Boost libraries to link with', boost_lib_default),    ('boost_libs', 'Boost libraries to link with', ['boost_python']),
82  # Doc building  # NetCDF
83  #  PathOption('doxygen_path', 'Path to Doxygen executable', None),    BoolOption('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),
84  #  PathOption('epydoc_path', 'Path to Epydoc executable', None),    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),
85  # PAPI    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),
86    PathOption('papi_path', 'Path to PAPI includes', None),    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),
   PathOption('papi_lib_path', 'Path to PAPI libs', None),  
   ('papi_libs', 'PAPI libraries to link with', None),  
   ('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', None),  
87  # MPI  # MPI
88    BoolOption('useMPI', 'Compile parallel version using MPI', useMPI_default),    BoolOption('useMPI', 'For backwards compatibility', 'no'),
89      BoolOption('usempi', 'Compile parallel version using MPI', 'no'),
90    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),
91    PathOption('mpi_path', 'Path to MPI includes', mpi_path_default),    ('mpi_path', 'Path to MPI includes', '/usr/include'),
92    ('mpi_run', 'mpirun name' , mpi_run_default),    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),
93    PathOption('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)',mpi_lib_path_default),    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),
94    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', mpi_libs_default)    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),
95    # ParMETIS
96      BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),
97      ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),
98      ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),
99      ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),
100    # PAPI
101      BoolOption('usepapi', 'switch on/off the usage of PAPI', 'no'),
102      ('papi_path', 'Path to PAPI includes', '/usr/include'),
103      ('papi_lib_path', 'Path to PAPI libs', usr_lib),
104      ('papi_libs', 'PAPI libraries to link with', ['papi']),
105      BoolOption('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),
106    # MKL
107      BoolOption('usemkl', 'switch on/off the usage of MKL', 'no'),
108      ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),
109      ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),
110      ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),
111    # UMFPACK
112      BoolOption('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),
113      ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),
114      ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),
115      ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),
116      ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),
117    # AMD (used by UMFPACK)
118      ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),
119      ('amd_lib_path', 'Path to AMD libs', usr_lib),
120      ('amd_libs', 'AMD libraries to link with', ['amd']),
121    # BLAS (used by UMFPACK)
122      ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),
123      ('blas_lib_path', 'Path to BLAS libs', usr_lib),
124      ('blas_libs', 'BLAS libraries to link with', ['blas'])
125  )  )
126  #=================================================================================================  
127  #  ############ Specify which compilers to use ####################
128  #   Note: On the Altix the intel compilers are not automatically  
129  #   detected by scons intelc.py script. The Altix has a different directory  # intelc uses regular expressions improperly and emits a warning about
130  #   path and in some locations the "modules" facility is used to support  # failing to find the compilers.  This warning can be safely ignored.
 #   multiple compiler versions. This forces the need to import the users PATH  
 #   environment which isn't the "scons way"  
 #   This doesn't impact linux and windows which will use the default compiler (g++ or msvc, or the intel compiler if it is installed on both platforms)  
 #   FIXME: Perhaps a modification to intelc.py will allow better support for ia64 on altix  
 #  
131    
132  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
133        env = Environment(tools = ['default', 'msvc'], options = opts)        env = Environment(tools = ['default', 'msvc'], options = opts)
134  else:  else:
135     if os.uname()[4]=='ia64':     if socket.gethostname().split('.')[0] == 'service0':
136          env = Environment(tools = ['default', 'intelc'], options = opts)
137       elif os.uname()[4]=='ia64':
138        env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default', 'intelc'], options = opts)
139        if env['CXX'] == 'icpc':        if env['CXX'] == 'icpc':
140           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not). FIXME: this behaviour could be directly incorporated into scons intelc.py           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)
141     else:     else:
142        env = Environment(tools = ['default'], options = opts)        env = Environment(tools = ['default'], options = opts)
143  Help(opts.GenerateHelpText(env))  Help(opts.GenerateHelpText(env))
144    
145  if env['bounds_check']:  ############ Fill in compiler options if not set above #########
    env.Append(CPPDEFINES = [ 'BOUNDS_CHECK' ])  
    env.Append(CXXDEFINES = [ 'BOUNDS_CHECK' ])  
    bounds_check = env['bounds_check']  
 else:  
    bounds_check = 0  
146    
147  #=================================================================================================  # Backwards compatibility: allow dodebug=yes and useMPI=yes
148  #  if env['dodebug']: env['usedebug'] = 1
149  #     Initialise Scons Build Environment  if env['useMPI']: env['usempi'] = 1
150  #     check for user environment variables we are interested in  
151  try:  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)
152     tmp = os.environ['PYTHONPATH']  # For both C and C++ you get: cc_flags and either the optim flags or debug flags
153     env['ENV']['PYTHONPATH'] = tmp  
154  except KeyError:  if env["CC"] == "icc":
155     pass    # Intel compilers
156      cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
157      cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"
158      cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
159      omp_optim     = "-openmp -openmp_report0"
160      omp_debug     = "-openmp -openmp_report0"
161      omp_libs      = ['guide', 'pthread']
162      pedantic      = ""
163    elif env["CC"] == "gcc":
164      # GNU C on any system
165      cc_flags      = "-fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER"
166      cc_optim      = "-O3"
167      cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
168      omp_optim     = ""
169      omp_debug     = ""
170      omp_libs      = []
171      pedantic      = "-pedantic-errors -Wno-long-long"
172    elif env["CC"] == "cl":
173      # Microsoft Visual C on Windows
174      cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"
175      cc_optim      = "/O2 /Op /MT /W3"
176      cc_debug      = "/Od /RTC1 /MTd /ZI -DBOUNDS_CHECK"
177      omp_optim     = ""
178      omp_debug     = ""
179      omp_libs      = []
180      pedantic      = ""
181    
182    # If not specified in hostname_options.py then set them here
183    if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags
184    if env["cc_optim"]  == "-DEFAULT_2": env['cc_optim'] = cc_optim
185    if env["cc_debug"]  == "-DEFAULT_3": env['cc_debug'] = cc_debug
186    if env["omp_optim"] == "-DEFAULT_4": env['omp_optim'] = omp_optim
187    if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug
188    if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs
189    
190    # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty
191    if not env["useopenmp"]:
192      env['omp_optim'] = ""
193      env['omp_debug'] = ""
194      env['omp_libs'] = []
195    
196    if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0
197    
198    ############ Copy environment variables into scons env #########
199    
200    try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']
201    except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1
202    
203    try: env['ENV']['PATH'] = os.environ['PATH']
204    except KeyError: pass
205    
206    try: env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
207    except KeyError: pass
208    
209    try: env['ENV']['C_INCLUDE_PATH'] = os.environ['C_INCLUDE_PATH']
210    except KeyError: pass
211    
212    try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']
213    except KeyError: pass
214    
215    try: env['ENV']['LD_LIBRARY_PATH'] = os.environ['LD_LIBRARY_PATH']
216    except KeyError: pass
217    
218    try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']
219    except KeyError: pass
220    
221    try: env['ENV']['DISPLAY'] = os.environ['DISPLAY']
222    except KeyError: pass
223    
224    try: env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']
225    except KeyError: pass
226    
227    try: env['ENV']['HOME'] = os.environ['HOME']
228    except KeyError: pass
229    
230    # Configure for test suite
231    env.PrependENVPath('PYTHONPATH', prefix)
232    env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
233    
234    env['ENV']['ESCRIPT_ROOT'] = prefix
235    
236    ############ Set up paths for Configure() ######################
237    
238    # Make a copy of an environment
239    # Use env.Clone if available, but fall back on env.Copy for older version of scons
240    def clone_env(env):
241      if 'Clone' in dir(env): return env.Clone()    # scons-0.98
242      else:                   return env.Copy() # scons-0.96
243    
244    # Add cc option -I<Escript>/trunk/include
245    env.Append(CPPPATH      = [Dir('include')])
246    
247    # Add cc option -L<Escript>/trunk/lib
248    env.Append(LIBPATH      = [Dir(env['libinstall'])])
249    
250  env.PrependENVPath('PYTHONPATH', source_root)  env.Append(CPPDEFINES = ['ESCRIPT_EXPORTS', 'FINLEY_EXPORTS'])
251    
252  try:  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])
253     omp_num_threads = os.environ['OMP_NUM_THREADS']  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])
 except KeyError:  
    omp_num_threads = 1  
 env['ENV']['OMP_NUM_THREADS'] = omp_num_threads  
254    
255  try:  if env['usepedantic']: env.Append(CCFLAGS = pedantic)
    path = os.environ['PATH']  
    env['ENV']['PATH'] = path  
 except KeyError:  
    omp_num_threads = 1  
256    
257  env['ENV']['OMP_NUM_THREADS'] = omp_num_threads  # MS Windows
258    if IS_WINDOWS_PLATFORM:
259      env.PrependENVPath('PATH',    [env['boost_lib_path']])
260      env.PrependENVPath('PATH',    [env['libinstall']])
261      if env['usenetcdf']:
262        env.PrependENVPath('PATH',  [env['netCDF_lib_path']])
263    
264    env.Append(ARFLAGS = env['ar_flags'])
265    
266  # Copy some variables from the system environment to the build environment  # Get the global Subversion revision number for getVersion() method
267  try:  try:
268     env['ENV']['DISPLAY'] = os.environ['DISPLAY']     global_revision = os.popen("svnversion -n .").read()
269     env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']     global_revision = re.sub(":.*", "", global_revision)
270     home_temp = os.environ['HOME']   # MPICH2's mpd needs $HOME to find $HOME/.mpd.conf     global_revision = re.sub("[^0-9]", "", global_revision)
271     env['ENV']['HOME'] = home_temp  except:
272  except KeyError:     global_revision="-1"
273     pass  if global_revision == "": global_revision="-2"
274    env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])
275    
276  try:  ############ numarray (required) ###############################
    tmp = os.environ['PATH']  
    env['ENV']['PATH'] = tmp  
 except KeyError:  
    pass  
277    
278  try:  try:
279     tmp = os.environ['LD_LIBRARY_PATH']    from numarray import identity
280     print tmp  except ImportError:
281     env['ENV']['LD_LIBRARY_PATH'] = tmp    print "Cannot import numarray, you need to set your PYTHONPATH"
282  except KeyError:    sys.exit(1)
    pass  
 #==========================================================================  
 #  
 #    Add some customer builders  
 #  
 py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  
 env.Append(BUILDERS = {'PyCompile' : py_builder});  
283    
284  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed',  ############ C compiler (required) #############################
                               src_suffix=env['PROGSUFFIX'], single_source=True)  
285    
286  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  # Create a Configure() environment for checking existence of required libraries and headers
287    conf = Configure(clone_env(env))
288    
289  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  # Test that the compiler is working
290  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  if not conf.CheckFunc('printf'):
291      print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])
292      sys.exit(1)
293    
294  # Convert the options which are held in environment variable into python variables for ease of handling and configure compilation options  if conf.CheckFunc('gethostname'):
295  try:    conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])
    incinstall = env['incinstall']  
    env.Append(CPPPATH = [incinstall,])  
 except KeyError:  
    incinstall = None  
 try:  
    libinstall = env['libinstall']  
    env.Append(LIBPATH = [libinstall,]) # Adds -L for building of libescript.so libfinley.so escriptcpp.so finleycpp.so  
    env.PrependENVPath('LD_LIBRARY_PATH', libinstall)  
    if IS_WINDOWS_PLATFORM :  
       env.PrependENVPath('PATH', libinstall)  
       env.PrependENVPath('PATH', env['boost_lib_path'])  
 except KeyError:  
    libinstall = None  
 try:  
    pyinstall = env['pyinstall'] # all targets will install into pyinstall/esys but PYTHONPATH points at straight pyinstall so you go import esys.escript etc  
 except KeyError:  
    pyinstall = None  
296    
297  try:  ############ python libraries (required) #######################
    cc_defines = env['cc_defines']  
    env.Append(CPPDEFINES = cc_defines)  
 except KeyError:  
    pass  
 try:  
    flags = env['ar_flags']  
    env.Append(ARFLAGS = flags)  
 except KeyError:  
    ar_flags = None  
 try:  
    sys_libs = env['sys_libs']  
 except KeyError:  
    sys_libs = []  
298    
299  try:  conf.env.AppendUnique(CPPPATH       = [env['python_path']])
300     tar_flags = env['tar_flags']  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])
301     env.Replace(TARFLAGS = tar_flags)  conf.env.AppendUnique(LIBS      = [env['python_libs']])
 except KeyError:  
    pass  
302    
303  try:  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs
    exinstall = env['exinstall']  
 except KeyError:  
    exinstall = None  
 try:  
    sys_libinstall = env['sys_libinstall']  
 except KeyError:  
    sys_libinstall = None  
 try:  
    sys_pyinstall = env['sys_pyinstall']  
 except KeyError:  
    sys_pyinstall = None  
 try:  
    sys_exinstall = env['sys_exinstall']  
 except KeyError:  
    sys_exinstall = None  
304    
305  # ====================== debugging ===================================  if not conf.CheckCHeader('Python.h'):
306  try:    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])
307     dodebug = env['dodebug']    sys.exit(1)
308  except KeyError:  if not conf.CheckFunc('Py_Main'):
309     dodebug = None    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])
310      sys.exit(1)
311    
312  # === switch on omp ===================================================  ############ boost (required) ##################################
 try:  
   omp_flags = env['omp_flags']  
 except KeyError:  
   omp_flags = ''  
313    
314  try:  conf.env.AppendUnique(CPPPATH       = [env['boost_path']])
315    omp_flags_debug = env['omp_flags_debug']  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])
316  except KeyError:  conf.env.AppendUnique(LIBS      = [env['boost_libs']])
   omp_flags_debug = ''  
317    
318  # ========= use mpi? =====================================================  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs
319  try:  
320     useMPI = env['useMPI']  if not conf.CheckCXXHeader('boost/python.hpp'):
321  except KeyError:    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])
322     useMPI = None    sys.exit(1)
323  # ========= set compiler flags ===========================================  if not conf.CheckFunc('PyObject_SetAttr'):
324      print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])
325  if dodebug:    sys.exit(1)
326      try:  
327        flags = env['cc_flags_debug'] + ' ' + omp_flags_debug  # Commit changes to environment
328        env.Append(CCFLAGS = flags)  env = conf.Finish()
329      except KeyError:  
330        pass  ############ VTK (optional) ####################################
331  else:  
332     try:  if env['usevtk']:
333        flags = env['cc_flags'] + ' ' + omp_flags    try:
334        env.Append(CCFLAGS = flags)      import vtk
335     except KeyError:      env['usevtk'] = 1
336        pass    except ImportError:
337  if dodebug:      env['usevtk'] = 0
338       try:  
339          flags = env['cxx_flags_debug']  # Add VTK to environment env if it was found
340          env.Append(CXXFLAGS = flags)  if env['usevtk']:
341       except KeyError:    env.Append(CPPDEFINES = ['USE_VTK'])
342          pass  
343    ############ NetCDF (optional) #################################
344    
345    conf = Configure(clone_env(env))
346    
347    if env['usenetcdf']:
348      conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])
349      conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])
350      conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])
351      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs
352    
353    if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0
354    if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0
355    
356    # Add NetCDF to environment env if it was found
357    if env['usenetcdf']:
358      env = conf.Finish()
359      env.Append(CPPDEFINES = ['USE_NETCDF'])
360  else:  else:
361       try:    conf.Finish()
362          flags = env['cxx_flags']  
363          env.Append(CXXFLAGS = flags)  ############ PAPI (optional) ###################################
364       except KeyError:  
365          pass  # Start a new configure environment that reflects what we've already found
366  try:  conf = Configure(clone_env(env))
      if env['CC'] == 'gcc': env.Append(CCFLAGS = "-pedantic-errors -Wno-long-long")  
 except:  
      pass  
367    
368  # ============= Remember what options were used in the compile =====================================  if env['usepapi']:
369  if not IS_WINDOWS_PLATFORM:    conf.env.AppendUnique(CPPPATH = [env['papi_path']])
370    env.Execute("/bin/rm -f " + libinstall + "/Compiled.with.*")    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])
371    if dodebug:       env.Execute("touch " + libinstall + "/Compiled.with.debug")    conf.env.AppendUnique(LIBS    = [env['papi_libs']])
372    if useMPI:        env.Execute("touch " + libinstall + "/Compiled.with.mpi")    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs
373    if omp_flags != '':   env.Execute("touch " + libinstall + "/Compiled.with.OpenMP")  
374    if bounds_check:  env.Execute("touch " + libinstall + "/Compiled.with.bounds_check")  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0
375    if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0
376  # ============= set mkl (but only of no MPI) =====================================  
377  if not useMPI:  # Add PAPI to environment env if it was found
378     try:  if env['usepapi']:
379        includes = env['mkl_path']    env = conf.Finish()
380        env.Append(CPPPATH = [includes,])    env.Append(CPPDEFINES = ['BLOCKPAPI'])
    except KeyError:  
       pass  
   
    try:  
       lib_path = env['mkl_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
       env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    except KeyError:  
       pass  
   
    try:  
       mkl_libs = env['mkl_libs']  
    except KeyError:  
       mkl_libs = []  
381  else:  else:
382       mkl_libs = []    conf.Finish()
383    
384    ############ MKL (optional) ####################################
385    
386  # ============= set scsl (but only of no MPI) =====================================  # Start a new configure environment that reflects what we've already found
387  if not useMPI:  conf = Configure(clone_env(env))
    try:  
       includes = env['scsl_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
   
    try:  
       lib_path = env['scsl_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
       env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    except KeyError:  
       pass  
     
    try:  
       scsl_libs = env['scsl_libs']  
    except KeyError:  
       scsl_libs = [ ]  
388    
389    if env['usemkl']:
390      conf.env.AppendUnique(CPPPATH = [env['mkl_path']])
391      conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])
392      conf.env.AppendUnique(LIBS    = [env['mkl_libs']])
393      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs
394    
395    if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0
396    if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0
397    
398    # Add MKL to environment env if it was found
399    if env['usemkl']:
400      env = conf.Finish()
401      env.Append(CPPDEFINES = ['MKL'])
402  else:  else:
403      scsl_libs =  []    conf.Finish()
404    
405    ############ UMFPACK (optional) ################################
406    
407    # Start a new configure environment that reflects what we've already found
408    conf = Configure(clone_env(env))
409    
410    if env['useumfpack']:
411      conf.env.AppendUnique(CPPPATH = [env['ufc_path']])
412      conf.env.AppendUnique(CPPPATH = [env['umf_path']])
413      conf.env.AppendUnique(LIBPATH = [env['umf_lib_path']])
414      conf.env.AppendUnique(LIBS    = [env['umf_libs']])
415      conf.env.AppendUnique(CPPPATH = [env['amd_path']])
416      conf.env.AppendUnique(LIBPATH = [env['amd_lib_path']])
417      conf.env.AppendUnique(LIBS    = [env['amd_libs']])
418      conf.env.AppendUnique(CPPPATH = [env['blas_path']])
419      conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])
420      conf.env.AppendUnique(LIBS    = [env['blas_libs']])
421      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs
422      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs
423      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs
424    
425    if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0
426    if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0
427    
428  # ============= set TRILINOS (but only with MPI) =====================================  # Add UMFPACK to environment env if it was found
429  if useMPI:  if env['useumfpack']:
430     try:    env = conf.Finish()
431        includes = env['trilinos_path']    env.Append(CPPDEFINES = ['UMFPACK'])
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
   
    try:  
       lib_path = env['trilinos_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
    except KeyError:  
       pass  
   
    try:  
       trilinos_libs = env['trilinos_libs']  
    except KeyError:  
       trilinos_libs = []  
432  else:  else:
433       trilinos_libs = []    conf.Finish()
434    
435    ############ Add the compiler flags ############################
436    
437  # ============= set umfpack (but only without MPI) =====================================  # Enable debug by choosing either cc_debug or cc_optim
438  umf_libs=[ ]  if env['usedebug']:
439  if not useMPI:    env.Append(CCFLAGS        = env['cc_debug'])
440     try:    env.Append(CCFLAGS        = env['omp_debug'])
       includes = env['umf_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
   
    try:  
       lib_path = env['umf_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
    except KeyError:  
       pass  
   
    try:  
       umf_libs = env['umf_libs']  
       umf_libs+=umf_libs  
    except KeyError:  
       pass  
   
    try:  
       includes = env['ufc_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
   
    try:  
       includes = env['amd_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
   
    try:  
       lib_path = env['amd_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
    except KeyError:  
       pass  
   
    try:  
       amd_libs = env['amd_libs']  
       umf_libs+=amd_libs  
    except KeyError:  
       pass  
   
 # ============= set TRILINOS (but only with MPI) =====================================  
 if useMPI:  
    try:  
       includes = env['trilinos_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
   
    try:  
       lib_path = env['trilinos_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
    except KeyError:  
       pass  
   
    try:  
       trilinos_libs = env['trilinos_libs']  
    except KeyError:  
       trilinos_libs = []  
441  else:  else:
442       trilinos_libs = []    env.Append(CCFLAGS        = env['cc_optim'])
443      env.Append(CCFLAGS        = env['omp_optim'])
444    
445  # ============= set blas =====================================  # Always use cc_flags
446  try:  env.Append(CCFLAGS      = env['cc_flags'])
447     includes = env['blas_path']  env.Append(LIBS         = [env['omp_libs']])
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
448    
449  try:  ############ MPI (optional) ####################################
    lib_path = env['blas_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
450    
451  try:  # Create a modified environment for MPI programs (identical to env if usempi=no)
452     blas_libs = env['blas_libs']  env_mpi = clone_env(env)
 except KeyError:  
    blas_libs = [ ]  
453    
454  # ========== netcdf ====================================  # Start a new configure environment that reflects what we've already found
455  try:  conf = Configure(clone_env(env_mpi))
456     useNetCDF = env['useNetCDF']  
457  except KeyError:  if env_mpi['usempi']:
458     useNetCDF = 'yes'    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])
459     pass    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])
460          conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])
461  if useNetCDF == 'yes':    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs
462     try:  
463        netCDF_libs = env['netCDF_libs']  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0
464     except KeyError:  if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0
465        pass  
466    # Add MPI to environment env_mpi if it was found
467     env.Append(LIBS = netCDF_libs)  if env_mpi['usempi']:
468     env.Append(CPPDEFINES = [ 'USE_NETCDF' ])    env_mpi = conf.Finish()
469     try:    env_mpi.Append(CPPDEFINES = ['PASO_MPI', 'MPI_NO_CPPBIND', env_mpi['MPICH_IGNORE_CXX_SEEK']])
       includes = env['netCDF_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
   
    try:  
       lib_path = env['netCDF_lib_path']  
       env.Append(LIBPATH = [ lib_path, ])  
       env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
       if IS_WINDOWS_PLATFORM :  
          env.PrependENVPath('PATH', lib_path)  
    except KeyError:  
       pass  
470  else:  else:
471     print "Warning: Installation is not configured with netCDF. Some I/O function may not be available."    conf.Finish()
    netCDF_libs=[ ]  
472    
473  # ====================== boost ======================================  env['usempi'] = env_mpi['usempi']
474  try:  
475     includes = env['boost_path']  ############ ParMETIS (optional) ###############################
476     env.Append(CPPPATH = [includes,])  
477  except KeyError:  # Start a new configure environment that reflects what we've already found
478     pass  conf = Configure(clone_env(env_mpi))
479  try:  
480     lib_path = env['boost_lib_path']  if not env_mpi['usempi']: env_mpi['useparmetis'] = 0
481     env.Append(LIBPATH = [lib_path,])  
482     env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  if env_mpi['useparmetis']:
483     if IS_WINDOWS_PLATFORM :    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])
484        env.PrependENVPath('PATH', lib_path)    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])
485  except KeyError:    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])
486     pass    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs
487  try:  
488     boost_lib = env['boost_lib']  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0
489  except KeyError:  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0
490     boost_lib = None  
491  # ====================== python ======================================  # Add ParMETIS to environment env_mpi if it was found
492  try:  if env_mpi['useparmetis']:
493     includes = env['python_path']    env_mpi = conf.Finish()
494     env.Append(CPPPATH = [includes,])    env_mpi.Append(CPPDEFINES = ['USE_PARMETIS'])
 except KeyError:  
    pass  
 try:  
    lib_path = env['python_lib_path']  
    env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    python_lib = env['python_lib']  
 except KeyError:  
    python_lib = None  
 # =============== documentation =======================================  
 try:  
    doxygen_path = env['doxygen_path']  
 except KeyError:  
    doxygen_path = None  
 try:  
    epydoc_path = env['epydoc_path']  
 except KeyError:  
    epydoc_path = None  
 # =============== PAPI =======================================  
 try:  
    includes = env['papi_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['papi_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    papi_libs = env['papi_libs']  
 except KeyError:  
    papi_libs = None  
 # ============= set mpi =====================================  
 if useMPI:  
    env.Append(CPPDEFINES=['PASO_MPI',])  
    try:  
       includes = env['mpi_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
    try:  
       lib_path = env['mpi_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
       env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    except KeyError:  
       pass  
    try:  
       mpi_libs = env['mpi_libs']  
    except KeyError:  
       mpi_libs = []  
   
    try:  
       mpi_run = env['mpi_run']  
    except KeyError:  
       mpi_run = ''  
   
    try:  
        mpich_ignore_cxx_seek=env['MPICH_IGNORE_CXX_SEEK']  
        env.Append(CPPDEFINES = [ mpich_ignore_cxx_seek ] )  
    except KeyError:  
       pass  
495  else:  else:
496    mpi_libs=[]    conf.Finish()
   mpi_run = mpi_run_default  
 # =========== zip files ===========================================  
 try:  
    includes = env['papi_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['papi_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    papi_libs = env['papi_libs']  
 except KeyError:  
    papi_libs = None  
 try:  
    papi_instrument_solver = env['papi_instrument_solver']  
 except KeyError:  
    papi_instrument_solver = None  
497    
498    env['useparmetis'] = env_mpi['useparmetis']
499    
500  # ============= and some helpers =====================================  ############ Summarize our environment #########################
 try:  
    doxygen_path = env['doxygen_path']  
 except KeyError:  
    doxygen_path = None  
 try:  
    epydoc_path = env['epydoc_path']  
 except KeyError:  
    epydoc_path = None  
 try:  
    src_zipfile = env.File(env['src_zipfile'])  
 except KeyError:  
    src_zipfile = None  
 try:  
    test_zipfile = env.File(env['test_zipfile'])  
 except KeyError:  
    test_zipfile = None  
 try:  
    examples_zipfile = env.File(env['examples_zipfile'])  
 except KeyError:  
    examples_zipfile = None  
501    
502  try:  print ""
503     src_tarfile = env.File(env['src_tarfile'])  print "Summary of configuration (see ./config.log for information)"
504  except KeyError:  print " Using python libraries"
505     src_tarfile = None  print " Using numarray"
506  try:  print " Using boost"
507     test_tarfile = env.File(env['test_tarfile'])  if env['usenetcdf']: print "    Using NetCDF"
508  except KeyError:  else: print "   Not using NetCDF"
509     test_tarfile = None  if env['usevtk']: print "   Using VTK"
510  try:  else: print "   Not using VTK"
511     examples_tarfile = env.File(env['examples_tarfile'])  if env['usemkl']: print "   Using MKL"
512  except KeyError:  else: print "   Not using MKL"
513     examples_tarfile = None  if env['useumfpack']: print "   Using UMFPACK"
514    else: print "   Not using UMFPACK"
515    if env['useopenmp']: print "    Using OpenMP"
516    else: print "   Not using OpenMP"
517    if env['usempi']: print "   Using MPI"
518    else: print "   Not using MPI"
519    if env['useparmetis']: print "  Using ParMETIS"
520    else: print "   Not using ParMETIS (requires MPI)"
521    if env['usepapi']: print "  Using PAPI"
522    else: print "   Not using PAPI"
523    if env['usedebug']: print " Compiling for debug"
524    else: print "   Not compiling for debug"
525    print " Installing in", prefix
526    print ""
527    
528  try:  ############ Delete option-dependent files #####################
    guide_pdf = env.File(env['guide_pdf'])  
 except KeyError:  
    guide_pdf = None  
529    
530  try:  Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))
531     guide_html_index = env.File('index.htm',env['guide_html'])  Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))
532  except KeyError:  Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))
533     guide_html_index = None  if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))
534    
535  try:  ############ Add some custom builders ##########################
    api_epydoc = env.Dir(env['api_epydoc'])  
 except KeyError:  
    api_epydoc = None  
536    
537  try:  py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
538     api_doxygen = env.Dir(env['api_doxygen'])  env.Append(BUILDERS = {'PyCompile' : py_builder});
539  except KeyError:  
540     api_doxygen = None  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
541    env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
542    
543    runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
544    env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
545    
546    ############ Build the subdirectories ##########################
547    
548    Export(["env", "env_mpi", "clone_env"])
549    
 try:  
    svn_pipe = os.popen("svnversion -n .")  
    global_revision = svn_pipe.readlines()  
    svn_pipe.close()  
    global_revision = re.sub(":.*", "", global_revision[0])  
    global_revision = re.sub("[^0-9]", "", global_revision)  
 except:  
    global_revision="-1"  
    print "Warning: unable to recover global revsion number."  
 print "Revision number is %s."%global_revision  
 env.Append(CPPDEFINES = "SVN_VERSION="+global_revision)  
   
 # Python install - esys __init__.py  
 init_target = env.Command(pyinstall+'/__init__.py', None, Touch('$TARGET'))  
   
 # FIXME: exinstall and friends related to examples are not working.  
 build_target = env.Alias('build',[libinstall,incinstall,pyinstall,init_target])  
   
 env.Default(build_target)  
   
 # Zipgets  
 env.Alias('release_src',[ src_zipfile, src_tarfile ])  
 env.Alias('release_tests',[ test_zipfile, test_tarfile])  
 env.Alias('release_examples',[ examples_zipfile, examples_tarfile])  
 env.Alias('examples_zipfile',examples_zipfile)  
 env.Alias('examples_tarfile',examples_tarfile)  
 env.Alias('api_epydoc',api_epydoc)  
 env.Alias('api_doxygen',api_doxygen)  
 env.Alias('guide_html_index',guide_html_index)  
 env.Alias('guide_pdf', guide_pdf)  
 env.Alias('docs',[ 'release_examples', 'guide_pdf', api_epydoc, api_doxygen, guide_html_index])  
 env.Alias('release', ['release_src', 'release_tests', 'docs'])  
   
 env.Alias('build_tests',build_target)    # target to build all C++ tests  
 env.Alias('build_py_tests',build_target) # target to build all python tests  
 env.Alias('build_all_tests', [ 'build_tests', 'build_py_tests' ] ) # target to build all python tests  
 env.Alias('run_tests', 'build_tests')   # target to run all C++ test  
 env.Alias('py_tests', 'build_py_tests') # taget to run all released python tests  
 env.Alias('all_tests', ['run_tests', 'py_tests']) # target to run all C++ and released python tests  
   
   
 # Allow sconscripts to see the env  
 Export(["IS_WINDOWS_PLATFORM", "env", "incinstall", "libinstall", "pyinstall", "dodebug", "mkl_libs", "scsl_libs", "umf_libs", "blas_libs", "netCDF_libs", "useNetCDF", "mpi_run",  
     "boost_lib", "python_lib", "doxygen_path", "epydoc_path", "papi_libs",  
         "sys_libs", "test_zipfile", "src_zipfile", "test_tarfile", "src_tarfile", "examples_tarfile", "examples_zipfile", "trilinos_libs", "mpi_libs", "papi_instrument_solver",  
         "guide_pdf", "guide_html_index", "api_epydoc", "api_doxygen", "useMPI" ])  
   
 # End initialisation section  
 # Begin configuration section  
 # adds this file and the scons option directore to the source tar  
 release_srcfiles=[env.File('SConstruct'),env.Dir('lib'),env.Dir('include'),]+[ env.File(x) for x in glob.glob('scons/*.py') ]  
 release_testfiles=[env.File('README_TESTS'),]  
 env.Zip(src_zipfile, release_srcfiles)  
 env.Zip(test_zipfile, release_testfiles)  
 try:  
    env.Tar(src_tarfile, release_srcfiles)  
    env.Tar(test_tarfile, release_testfiles)  
 except AttributeError:  
    pass  
 # Insert new components to be build here  
 # FIXME: might be nice to replace this verbosity with a list of targets and some  
 # FIXME: nifty python to create the lengthy but very similar env.Sconscript lines  
 # Third Party libraries  
550  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
 # C/C++ Libraries  
551  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)
 # bruce is removed for now as it doesn't really do anything  
 # env.SConscript(dirs = ['bruce/src'], build_dir='build/$PLATFORM/bruce', duplicate=0)  
552  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)
553  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)
554  env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)
# Line 916  env.SConscript(dirs = ['doc'], build_dir Line 557  env.SConscript(dirs = ['doc'], build_dir
557  env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)
558  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)
559  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)
560  #env.SConscript(dirs = ['../test'], build_dir='../test/build', duplicate=0)  env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)
561    
562    ############ Remember what optimizations we used ###############
563    
564    remember_list = []
565    
566    if env['usedebug']:
567      remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))
568    
569    if env['usempi']:
570      remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))
571    
572    if env['omp_optim'] != '':
573      remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))
574    
575    env.Alias('remember_options', remember_list)
576    
577    ############ Targets to build and install libraries ############
578    
579    target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))
580    env.Alias('target_init', [target_init])
581    
582    # The headers have to be installed prior to build in order to satisfy #include <paso/Common.h>
583    env.Alias('build_esysUtils', ['target_install_esysUtils_headers', 'target_esysUtils_a'])
584    env.Alias('install_esysUtils', ['build_esysUtils', 'target_install_esysUtils_a'])
585    
586    env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])
587    env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])
588    
589    env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])
590    env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])
591    
592    env.Alias('build_finley', ['target_install_finley_headers', 'target_finley_so', 'target_finleycpp_so'])
593    env.Alias('install_finley', ['build_finley', 'target_install_finley_so', 'target_install_finleycpp_so', 'target_install_finley_py'])
594    
595    # Now gather all the above into a couple easy targets: build_all and install_all
596    build_all_list = []
597    build_all_list += ['build_esysUtils']
598    build_all_list += ['build_paso']
599    build_all_list += ['build_escript']
600    build_all_list += ['build_finley']
601    if env['usempi']:       build_all_list += ['target_pythonMPI_exe']
602    if not IS_WINDOWS_PLATFORM: build_all_list += ['target_finley_wrapper']
603    env.Alias('build_all', build_all_list)
604    
605    install_all_list = []
606    install_all_list += ['target_init']
607    install_all_list += ['install_esysUtils']
608    install_all_list += ['install_paso']
609    install_all_list += ['install_escript']
610    install_all_list += ['install_finley']
611    install_all_list += ['target_install_pyvisi_py']
612    install_all_list += ['target_install_modellib_py']
613    install_all_list += ['target_install_pycad_py']
614    if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']
615    if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_finley_wrapper']
616    install_all_list += ['remember_options']
617    env.Alias('install_all', install_all_list)
618    
619    # Default target is install
620    env.Default('install_all')
621    
622    ############ Targets to build and run the test suite ###########
623    
624    env.Alias('build_cppunittest', ['target_install_cppunittest_headers', 'target_cppunittest_a'])
625    env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])
626    env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])
627    env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])
628    
629    ############ Targets to build the documentation ################
630    
631  syslib_install_target = env.installDirectory(sys_libinstall,libinstall)  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])
 syspy_install_target = env.installDirectory(sys_pyinstall,pyinstall,recursive=True)  
632    
 install_target = env.Alias("install", env.Flatten([syslib_install_target, syspy_install_target]) )  

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