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revision 2027 by phornby, Tue Nov 11 02:52:24 2008 UTC revision 4295 by caltinay, Fri Mar 8 04:42:01 2013 UTC
# Line 1  Line 1 
1    ##############################################################################
 ########################################################  
2  #  #
3  # Copyright (c) 2003-2008 by University of Queensland  # Copyright (c) 2003-2013 by University of Queensland
4  # Earth Systems Science Computational Center (ESSCC)  # http://www.uq.edu.au
 # http://www.uq.edu.au/esscc  
5  #  #
6  # Primary Business: Queensland, Australia  # Primary Business: Queensland, Australia
7  # Licensed under the Open Software License version 3.0  # Licensed under the Open Software License version 3.0
8  # http://www.opensource.org/licenses/osl-3.0.php  # http://www.opensource.org/licenses/osl-3.0.php
9  #  #
10  ########################################################  # Development until 2012 by Earth Systems Science Computational Center (ESSCC)
11    # Development since 2012 by School of Earth Sciences
12    #
13  EnsureSConsVersion(0,96,91)  ##############################################################################
 EnsurePythonVersion(2,3)  
   
 import sys, os, re, socket  
   
 # Add our extensions  
 if os.path.isdir('scons'): sys.path.append('scons')  
 import scons_extensions  
14    
15  # Use /usr/lib64 if available, else /usr/lib  EnsureSConsVersion(0,98,1)
16  usr_lib = '/usr/lib'  EnsurePythonVersion(2,5)
 if os.path.isfile('/usr/lib64/libc.so'): usr_lib = '/usr/lib64'  
17    
18  # The string python2.4 or python2.5  import atexit, sys, os, platform, re
19  python_version = 'python%s.%s' % (sys.version_info[0], sys.version_info[1])  from distutils import sysconfig
20    from dependencies import *
21    from site_init import *
22    
23    # Version number to check for in options file. Increment when new features are
24    # added or existing options changed.
25    REQUIRED_OPTS_VERSION=201
26    
27  # MS Windows support, many thanks to PH  # MS Windows support, many thanks to PH
28  IS_WINDOWS_PLATFORM = (os.name== "nt")  IS_WINDOWS = (os.name == 'nt')
29    
30  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)  ########################## Determine options file ############################
31    # 1. command line
32    # 2. scons/<hostname>_options.py
33    # 3. name as part of a cluster
34    options_file=ARGUMENTS.get('options_file', None)
35    if not options_file:
36        ext_dir = os.path.join(os.getcwd(), 'scons')
37        hostname = platform.node().split('.')[0]
38        for name in hostname, effectiveName(hostname):
39            mangledhostname = re.sub('[^0-9a-zA-Z]', '_', hostname)
40            options_file = os.path.join(ext_dir, mangledhostname+'_options.py')
41            if os.path.isfile(options_file): break
42    
 # Read configuration options from file scons/<hostname>_options.py  
 hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  
 tmp = os.path.join("scons",hostname+"_options.py")  
 options_file = ARGUMENTS.get('options_file', tmp)  
43  if not os.path.isfile(options_file):  if not os.path.isfile(options_file):
44    options_file = False      print("\nWARNING:\nOptions file %s" % options_file)
45    print "Options file not found (expected '%s')" % tmp      print("not found! Default options will be used which is most likely suboptimal.")
46  else:      print("It is recommended that you copy one of the TEMPLATE files in the scons/")
47    print "Options file is", options_file      print("subdirectory and customize it to your needs.\n")
48        options_file = None
49  # Load options file and command-line arguments  
50  opts = Options(options_file, ARGUMENTS)  ############################### Build options ################################
51    
52  ############ Load build options ################################  default_prefix='/usr'
53    mpi_flavours=('no', 'none', 'MPT', 'MPICH', 'MPICH2', 'OPENMPI', 'INTELMPI')
54  opts.AddOptions(  lapack_flavours=('none', 'clapack', 'mkl')
55  # Where to install esys stuff  
56    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),  vars = Variables(options_file, ARGUMENTS)
57    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),  vars.AddVariables(
58    ('bininstall', 'where the esys binaries will be installed',            os.path.join(prefix,'bin')),    PathVariable('options_file', 'Path to options file', options_file, PathVariable.PathIsFile),
59    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),    PathVariable('prefix', 'Installation prefix', Dir('#.').abspath, PathVariable.PathIsDirCreate),
60    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),    PathVariable('build_dir', 'Top-level build directory', Dir('#/build').abspath, PathVariable.PathIsDirCreate),
61  # Compilation options    BoolVariable('verbose', 'Output full compile/link lines', False),
62    BoolOption('dodebug', 'For backwards compatibility', 'no'),  # Compiler/Linker options
63    BoolOption('usedebug', 'Do you want a debug build?', 'no'),    ('cc', 'Path to C compiler', 'default'),
64    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),    ('cxx', 'Path to C++ compiler', 'default'),
65    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),    ('cc_flags', 'Base C/C++ compiler flags', 'default'),
66    ('win_cc_name', 'windows C compiler name if needed', 'msvc'),    ('cc_optim', 'Additional C/C++ flags for a non-debug build', 'default'),
67    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below    ('cc_debug', 'Additional C/C++ flags for a debug build', 'default'),
68    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),    ('cc_extra', 'Extra C compiler flags', ''),
69    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),    ('cxx_extra', 'Extra C++ compiler flags', ''),
   ('cc_debug', 'C compiler debug flags to use', '-DEFAULT_3'),  
   ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),  
   ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),  
   ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),  
   ('cc_extra', 'Extra C/C++ flags', ''),  
70    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
71    ('sys_libs', 'System libraries to link with', []),    BoolVariable('werror','Treat compiler warnings as errors', True),
72    ('ar_flags', 'Static library archiver flags to use', ''),    BoolVariable('debug', 'Compile with debug flags', False),
73    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'yes'),    BoolVariable('openmp', 'Compile parallel version using OpenMP', False),
74    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),    ('omp_flags', 'OpenMP compiler flags', 'default'),
75    BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),    ('omp_ldflags', 'OpenMP linker flags', 'default'),
76  # Python  # Mandatory libraries
77    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),    ('boost_prefix', 'Prefix/Paths of boost installation', default_prefix),
78    ('python_lib_path', 'Path to Python libs', usr_lib),    ('boost_libs', 'Boost libraries to link with', ['boost_python-mt']),
79    ('python_libs', 'Python libraries to link with', [python_version]),  # Mandatory for tests
80    ('python_cmd', 'Python command', 'python'),    ('cppunit_prefix', 'Prefix/Paths of CppUnit installation', default_prefix),
81  # Boost    ('cppunit_libs', 'CppUnit libraries to link with', ['cppunit']),
82    ('boost_path', 'Path to Boost includes', '/usr/include'),  # Optional libraries and options
83    ('boost_lib_path', 'Path to Boost libs', usr_lib),    EnumVariable('mpi', 'Compile parallel version using MPI flavour', 'none', allowed_values=mpi_flavours),
84    ('boost_libs', 'Boost libraries to link with', ['boost_python']),    ('mpi_prefix', 'Prefix/Paths of MPI installation', default_prefix),
85  # NetCDF    ('mpi_libs', 'MPI shared libraries to link with', ['mpi']),
86    BoolOption('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),    BoolVariable('netcdf', 'Enable netCDF file support', False),
87    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),    ('netcdf_prefix', 'Prefix/Paths of netCDF installation', default_prefix),
88    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),    ('netcdf_libs', 'netCDF libraries to link with', ['netcdf_c++', 'netcdf']),
89    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),    BoolVariable('parmetis', 'Enable ParMETIS (requires MPI)', False),
90  # MPI    ('parmetis_prefix', 'Prefix/Paths of ParMETIS installation', default_prefix),
91    BoolOption('useMPI', 'For backwards compatibility', 'no'),    ('parmetis_libs', 'ParMETIS libraries to link with', ['parmetis', 'metis']),
92    BoolOption('usempi', 'Compile parallel version using MPI', 'no'),    BoolVariable('papi', 'Enable PAPI', False),
93    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),    ('papi_prefix', 'Prefix/Paths to PAPI installation', default_prefix),
   ('mpi_path', 'Path to MPI includes', '/usr/include'),  
   ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),  
   ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),  
   ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),  
 # ParMETIS  
   BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),  
   ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),  
   ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),  
   ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),  
 # PAPI  
   BoolOption('usepapi', 'switch on/off the usage of PAPI', 'no'),  
   ('papi_path', 'Path to PAPI includes', '/usr/include'),  
   ('papi_lib_path', 'Path to PAPI libs', usr_lib),  
94    ('papi_libs', 'PAPI libraries to link with', ['papi']),    ('papi_libs', 'PAPI libraries to link with', ['papi']),
95    BoolOption('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),    BoolVariable('papi_instrument_solver', 'Use PAPI to instrument each iteration of the solver', False),
96  # MKL    BoolVariable('mkl', 'Enable the Math Kernel Library', False),
97    BoolOption('usemkl', 'switch on/off the usage of MKL', 'no'),    ('mkl_prefix', 'Prefix/Paths to MKL installation', default_prefix),
98    ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver','mkl_em64t','guide','pthread']),
99    ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),    BoolVariable('umfpack', 'Enable UMFPACK', False),
100    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),    ('umfpack_prefix', 'Prefix/Paths to UMFPACK installation', default_prefix),
101  # UMFPACK    ('umfpack_libs', 'UMFPACK libraries to link with', ['umfpack']),
102    BoolOption('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),    BoolVariable('boomeramg', 'Enable BoomerAMG', False),
103    ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),    ('boomeramg_prefix', 'Prefix/Paths to BoomerAMG installation', default_prefix),
104    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('boomeramg_libs', 'BoomerAMG libraries to link with', ['boomeramg']),
105    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    EnumVariable('lapack', 'Set LAPACK flavour', 'none', allowed_values=lapack_flavours),
106    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('lapack_prefix', 'Prefix/Paths to LAPACK installation', default_prefix),
107  # AMD (used by UMFPACK)    ('lapack_libs', 'LAPACK libraries to link with', []),
108    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    BoolVariable('silo', 'Enable the Silo file format in weipa', False),
109    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('silo_prefix', 'Prefix/Paths to Silo installation', default_prefix),
110    ('amd_libs', 'AMD libraries to link with', ['amd']),    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
111  # BLAS (used by UMFPACK)    BoolVariable('visit', 'Enable the VisIt simulation interface', False),
112    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),    ('visit_prefix', 'Prefix/Paths to VisIt installation', default_prefix),
113    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    ('visit_libs', 'VisIt libraries to link with', ['simV2']),
114    ('blas_libs', 'BLAS libraries to link with', ['blas']),    BoolVariable('vsl_random', 'Use VSL from intel for random data', False),
115  # An option for specifying the compiler tools set (see windows branch).  # Advanced settings
116    ('tools_names', 'allow control over the tools in the env setup', ['intelc'])    #dudley_assemble_flags = -funroll-loops      to actually do something
117      ('dudley_assemble_flags', 'compiler flags for some dudley optimisations', ''),
118      # To enable passing function pointers through python
119      BoolVariable('iknowwhatimdoing', 'Allow non-standard C', False),
120      # An option for specifying the compiler tools (see windows branch)
121      ('tools_names', 'Compiler tools to use', ['default']),
122      ('env_export', 'Environment variables to be passed to tools',[]),
123      EnumVariable('forcelazy', 'For testing use only - set the default value for autolazy', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
124      EnumVariable('forcecollres', 'For testing use only - set the default value for force resolving collective ops', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
125      # finer control over library building, intel aggressive global optimisation
126      # works with dynamic libraries on windows.
127      ('build_shared', 'Build dynamic libraries only', False),
128      ('sys_libs', 'Extra libraries to link with', []),
129      ('escript_opts_version', 'Version of options file (do not specify on command line)'),
130      ('SVN_VERSION', 'Do not use from options file', -2),
131      ('pythoncmd', 'which python to compile with','python'),
132      ('usepython3', 'Is this a python3 build? (experimental)', False),
133      ('pythonlibname', 'Name of the python library to link. (This is found automatically for python2.X.)', ''),
134      ('pythonlibpath', 'Path to the python library. (You should not need to set this unless your python has moved)',''),
135      ('pythonincpath','Path to python include files. (You should not need to set this unless your python has moved',''),
136      BoolVariable('BADPYTHONMACROS','Extra \#include to get around a python bug.', True),
137  )  )
138    
139  ############ Specify which compilers to use ####################  ##################### Create environment and help text #######################
140    
141  # intelc uses regular expressions improperly and emits a warning about  # Intel's compiler uses regular expressions improperly and emits a warning
142  # failing to find the compilers.  This warning can be safely ignored.  # about failing to find the compilers. This warning can be safely ignored.
143    
144  if IS_WINDOWS_PLATFORM:  # PATH is needed so the compiler, linker and tools are found if they are not
145        env = Environment(options = opts)  # in default locations.
146        env = Environment(tools = ['default'] + env['tools_names'],  env = Environment(tools = ['default'], options = vars,
147                          options = opts)                    ENV = {'PATH': os.environ['PATH']})
148    
149    # set the vars for clang
150    def mkclang(env):
151        env['CC']='clang'
152        env['CXX']='clang++'
153    
154    if env['tools_names'] != 'default':
155        zz=env['tools_names']
156        if 'clang' in zz:
157            zz.remove('clang')
158            zz.insert(0, mkclang)
159        env = Environment(tools = ['default'] + env['tools_names'], options = vars,
160                          ENV = {'PATH' : os.environ['PATH']})
161    
162    if options_file:
163        opts_valid=False
164        if 'escript_opts_version' in env.Dictionary() and \
165            int(env['escript_opts_version']) >= REQUIRED_OPTS_VERSION:
166                opts_valid=True
167        if opts_valid:
168            print("Using options in %s." % options_file)
169        else:
170            print("\nOptions file %s" % options_file)
171            print("is outdated! Please update the file by examining one of the TEMPLATE")
172            print("files in the scons/ subdirectory and setting escript_opts_version to %d.\n"%REQUIRED_OPTS_VERSION)
173            Exit(1)
174    
175    # Generate help text (scons -h)
176    Help(vars.GenerateHelpText(env))
177    
178    # Check for superfluous options
179    if len(vars.UnknownVariables())>0:
180        for k in vars.UnknownVariables():
181            print("Unknown option '%s'" % k)
182        Exit(1)
183    
184    # create dictionary which will be populated with info for buildvars file
185    env['buildvars']={}
186    # create list which will be populated with warnings if there are any
187    env['warnings']=[]
188    
189    #################### Make sure install directories exist #####################
190    
191    env['BUILD_DIR']=Dir(env['build_dir']).abspath
192    prefix=Dir(env['prefix']).abspath
193    env['buildvars']['prefix']=prefix
194    env['incinstall'] = os.path.join(prefix, 'include')
195    env['bininstall'] = os.path.join(prefix, 'bin')
196    env['libinstall'] = os.path.join(prefix, 'lib')
197    env['pyinstall']  = os.path.join(prefix, 'esys')
198    if not os.path.isdir(env['bininstall']):
199        os.makedirs(env['bininstall'])
200    if not os.path.isdir(env['libinstall']):
201        os.makedirs(env['libinstall'])
202    if not os.path.isdir(env['pyinstall']):
203        os.makedirs(env['pyinstall'])
204    
205    env.Append(CPPPATH = [env['incinstall']])
206    env.Append(LIBPATH = [env['libinstall']])
207    
208    ################# Fill in compiler options if not set above ##################
209    
210    if env['cc'] != 'default': env['CC']=env['cc']
211    if env['cxx'] != 'default': env['CXX']=env['cxx']
212    
213    # version >=9 of intel C++ compiler requires use of icpc to link in C++
214    # runtimes (icc does not)
215    if not IS_WINDOWS and os.uname()[4]=='ia64' and env['CXX']=='icpc':
216        env['LINK'] = env['CXX']
217    
218    # default compiler/linker options
219    cc_flags = ''
220    cc_optim = ''
221    cc_debug = ''
222    omp_flags = ''
223    omp_ldflags = ''
224    fatalwarning = '' # switch to turn warnings into errors
225    sysheaderopt = '' # how to indicate that a header is a system header
226    
227    # env['CC'] might be a full path
228    cc_name=os.path.basename(env['CC'])
229    
230    if cc_name == 'icc':
231        # Intel compiler
232        # #1875: offsetof applied to non-POD types is nonstandard (in boost)
233        cc_flags    = "-std=c99 -fPIC -w2 -wd1875 -Wno-unknown-pragmas -DBLOCKTIMER -DCORE_ID1"
234        cc_optim    = "-O3 -ftz -fno-alias -ipo -xHost"
235        cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
236        omp_flags   = "-openmp"
237        omp_ldflags = "-openmp -openmp_report=1"
238        fatalwarning = "-Werror"
239    elif cc_name[:3] == 'gcc':
240        # GNU C on any system
241        # note that -ffast-math is not used because it breaks isnan(),
242        # see mantis #691
243        cc_flags     = "-pedantic -Wall -fPIC -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"
244        cc_optim     = "-O3"
245        cc_debug     = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
246        omp_flags    = "-fopenmp"
247        omp_ldflags  = "-fopenmp"
248        fatalwarning = "-Werror"
249        sysheaderopt = "-isystem"
250    elif cc_name == 'cl':
251        # Microsoft Visual C on Windows
252        cc_flags     = "/EHsc /MD /GR /wd4068 /D_USE_MATH_DEFINES /DDLL_NETCDF"
253        cc_optim     = "/O2 /Op /W3"
254        cc_debug     = "/Od /RTCcsu /ZI /DBOUNDS_CHECK"
255        fatalwarning = "/WX"
256    elif cc_name == 'icl':
257        # Intel C on Windows
258        cc_flags     = '/EHsc /GR /MD'
259        cc_optim     = '/fast /Oi /W3 /Qssp /Qinline-factor- /Qinline-min-size=0 /Qunroll'
260        cc_debug     = '/Od /RTCcsu /Zi /Y- /debug:all /Qtrapuv'
261        omp_flags    = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
262        omp_ldflags  = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
263    
264    env['sysheaderopt']=sysheaderopt
265    
266    # set defaults if not otherwise specified
267    if env['cc_flags']    == 'default': env['cc_flags'] = cc_flags
268    if env['cc_optim']    == 'default': env['cc_optim'] = cc_optim
269    if env['cc_debug']    == 'default': env['cc_debug'] = cc_debug
270    if env['omp_flags']   == 'default': env['omp_flags'] = omp_flags
271    if env['omp_ldflags'] == 'default': env['omp_ldflags'] = omp_ldflags
272    if env['cc_extra']  != '': env.Append(CFLAGS = env['cc_extra'])
273    if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
274    if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])
275    
276    if env['BADPYTHONMACROS']: env.Append(CXXFLAGS = ' -DBADPYTHONMACROS')
277    
278    if env['usepython3']:
279        env.Append(CPPDEFINES=['ESPYTHON3'])
280    
281    # set up the autolazy values
282    if env['forcelazy'] == 'on':
283        env.Append(CPPDEFINES=['FAUTOLAZYON'])
284    elif env['forcelazy'] == 'off':
285        env.Append(CPPDEFINES=['FAUTOLAZYOFF'])
286    
287    # set up the collective resolve values
288    if env['forcecollres'] == 'on':
289        env.Append(CPPDEFINES=['FRESCOLLECTON'])
290    elif env['forcecollres'] == 'off':
291        env.Append(CPPDEFINES=['FRESCOLLECTOFF'])
292    
293    # allow non-standard C if requested
294    if env['iknowwhatimdoing']:
295        env.Append(CPPDEFINES=['IKNOWWHATIMDOING'])
296    
297    # Disable OpenMP if no flags provided
298    if env['openmp'] and env['omp_flags'] == '':
299       env['warnings'].append("OpenMP requested but no flags provided - disabling OpenMP!")
300       env['openmp'] = False
301    
302    if env['openmp']:
303        env.Append(CCFLAGS = env['omp_flags'])
304        if env['omp_ldflags'] != '': env.Append(LINKFLAGS = env['omp_ldflags'])
305  else:  else:
306     if socket.gethostname().split('.')[0] == 'service0':      env['omp_flags']=''
307        env = Environment(tools = ['default', 'intelc'], options = opts)      env['omp_ldflags']=''
    elif os.uname()[4]=='ia64':  
       env = Environment(tools = ['default', 'intelc'], options = opts)  
       if env['CXX'] == 'icpc':  
          env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)  
    else:  
       env = Environment(tools = ['default'], options = opts)  
 Help(opts.GenerateHelpText(env))  
   
 ############ Fill in compiler options if not set above #########  
   
 # Backwards compatibility: allow dodebug=yes and useMPI=yes  
 if env['dodebug']: env['usedebug'] = 1  
 if env['useMPI']: env['usempi'] = 1  
   
 # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  
 # For both C and C++ you get: cc_flags and either the optim flags or debug flags  
   
 if env["CC"] == "icc":  
   # Intel compilers  
   cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"  
   cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"  
   cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  
   omp_optim     = "-openmp -openmp_report0"  
   omp_debug     = "-openmp -openmp_report0"  
   omp_libs      = ['guide', 'pthread']  
   pedantic      = ""  
   fatalwarning      = ""        # Switch to turn warnings into errors  
 elif env["CC"] == "gcc":  
   # GNU C on any system  
   cc_flags      = "-Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER -isystem /usr/include/boost/ -isystem /usr/include/python2.5/ -Wno-sign-compare"  
   cc_optim      = "-O3"  
   cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  
   omp_optim     = ""  
   omp_debug     = ""  
   omp_libs      = []  
   pedantic      = "-pedantic-errors -Wno-long-long"  
   fatalwarning      = "-Werror"  
 elif env["CC"] == "cl":  
   # Microsoft Visual C on Windows  
   cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"  
   cc_optim      = "/O2 /Op /MT /W3"  
   cc_debug      = "/Od /RTC1 /MTd /ZI -DBOUNDS_CHECK"  
   omp_optim     = ""  
   omp_debug     = ""  
   omp_libs      = []  
   pedantic      = ""  
   fatalwarning      = ""  
 elif env["CC"] == "icl":  
   # intel C on Windows, see windows_intelc_options.py for a start  
   pedantic      = ""  
   fatalwarning      = ""  
   
 # If not specified in hostname_options.py then set them here  
 if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  
 if env["cc_optim"]  == "-DEFAULT_2": env['cc_optim'] = cc_optim  
 if env["cc_debug"]  == "-DEFAULT_3": env['cc_debug'] = cc_debug  
 if env["omp_optim"] == "-DEFAULT_4": env['omp_optim'] = omp_optim  
 if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  
 if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  
   
 # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  
 if not env["useopenmp"]:  
   env['omp_optim'] = ""  
   env['omp_debug'] = ""  
   env['omp_libs'] = []  
   
 if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0  
   
 ############ Copy environment variables into scons env #########  
   
 try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']  
 except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1  
   
 try: env['ENV']['PATH'] = os.environ['PATH']  
 except KeyError: pass  
   
 try: env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']  
 except KeyError: pass  
   
 try: env['ENV']['C_INCLUDE_PATH'] = os.environ['C_INCLUDE_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['LD_LIBRARY_PATH'] = os.environ['LD_LIBRARY_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['DISPLAY'] = os.environ['DISPLAY']  
 except KeyError: pass  
   
 try: env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']  
 except KeyError: pass  
   
 try: env['ENV']['HOME'] = os.environ['HOME']  
 except KeyError: pass  
   
 # Configure for test suite  
 env.PrependENVPath('PYTHONPATH', prefix)  
 env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
   
 env['ENV']['ESCRIPT_ROOT'] = prefix  
308    
309  ############ Set up paths for Configure() ######################  env['buildvars']['openmp']=int(env['openmp'])
310    
311  # Make a copy of an environment  # add debug/non-debug compiler flags
312  # Use env.Clone if available, but fall back on env.Copy for older version of scons  env['buildvars']['debug']=int(env['debug'])
313  def clone_env(env):  if env['debug']:
314    if 'Clone' in dir(env): return env.Clone()    # scons-0.98      env.Append(CCFLAGS = env['cc_debug'])
315    else:                   return env.Copy() # scons-0.96  else:
316        env.Append(CCFLAGS = env['cc_optim'])
317    
318  # Add cc option -I<Escript>/trunk/include  # always add cc_flags
319  env.Append(CPPPATH      = [Dir('include')])  env.Append(CCFLAGS = env['cc_flags'])
320    
321  # Add cc option -L<Escript>/trunk/lib  # add system libraries
322  env.Append(LIBPATH      = [Dir(env['libinstall'])])  env.AppendUnique(LIBS = env['sys_libs'])
323    
324  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])  # determine svn revision
325  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])  global_revision=ARGUMENTS.get('SVN_VERSION', None)
326    if global_revision:
327        global_revision = re.sub(':.*', '', global_revision)
328        global_revision = re.sub('[^0-9]', '', global_revision)
329        if global_revision == '': global_revision='-2'
330    else:
331      # Get the global Subversion revision number for the getVersion() method
332      try:
333        global_revision = os.popen('svnversion -n .').read()
334        global_revision = re.sub(':.*', '', global_revision)
335        global_revision = re.sub('[^0-9]', '', global_revision)
336        if global_revision == '': global_revision='-2'
337      except:
338        global_revision = '-1'
339    env['svn_revision']=global_revision
340    env['buildvars']['svn_revision']=global_revision
341    env.Append(CPPDEFINES=['SVN_VERSION='+global_revision])
342    
343    if IS_WINDOWS:
344        if not env['build_shared']:
345            env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
346            env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
347    
348    # VSL random numbers
349    env['buildvars']['vsl_random']=int(env['vsl_random'])
350    if env['vsl_random']:
351        env.Append(CPPDEFINES = ['MKLRANDOM'])
352    
353    env['IS_WINDOWS']=IS_WINDOWS
354    
355    ###################### Copy required environment vars ########################
356    
357    # Windows doesn't use LD_LIBRARY_PATH but PATH instead
358    if IS_WINDOWS:
359        LD_LIBRARY_PATH_KEY='PATH'
360        env['ENV']['LD_LIBRARY_PATH']=''
361    else:
362        LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'
363    
364  if env['usepedantic']: env.Append(CCFLAGS = pedantic)  env['LD_LIBRARY_PATH_KEY']=LD_LIBRARY_PATH_KEY
365    
366  # MS Windows  # the following env variables are exported for the unit tests
 if IS_WINDOWS_PLATFORM:  
   env.PrependENVPath('PATH',    [env['boost_lib_path']])  
   env.PrependENVPath('PATH',    [env['libinstall']])  
   if env['usenetcdf']:  
     env.PrependENVPath('PATH',  [env['netCDF_lib_path']])  
367    
368  env.Append(ARFLAGS = env['ar_flags'])  for key in 'OMP_NUM_THREADS', 'ESCRIPT_NUM_PROCS', 'ESCRIPT_NUM_NODES':
369        try:
370            env['ENV'][key] = os.environ[key]
371        except KeyError:
372            env['ENV'][key] = 1
373    
374    env_export=env['env_export']
375    env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME','KMP_MONITOR_STACKSIZE','TMPDIR','TEMP','TMP'])
376    
377    for key in set(env_export):
378        try:
379            env['ENV'][key] = os.environ[key]
380        except KeyError:
381            pass
382    
 # Get the global Subversion revision number for getVersion() method  
383  try:  try:
384     global_revision = os.popen("svnversion -n .").read()      env.PrependENVPath(LD_LIBRARY_PATH_KEY, os.environ[LD_LIBRARY_PATH_KEY])
385     global_revision = re.sub(":.*", "", global_revision)  except KeyError:
386     global_revision = re.sub("[^0-9]", "", global_revision)      pass
387  except:  
388     global_revision="-1"  # these shouldn't be needed
389  if global_revision == "": global_revision="-2"  #for key in 'C_INCLUDE_PATH','CPLUS_INCLUDE_PATH','LIBRARY_PATH':
390  env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])  #    try:
391    #        env['ENV'][key] = os.environ[key]
392  ############ numarray (required) ###############################  #    except KeyError:
393    #        pass
394    
395  try:  try:
396    from numarray import identity      env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
397  except ImportError:  except KeyError:
398    print "Cannot import numarray, you need to set your PYTHONPATH"      pass
   sys.exit(1)  
   
 ############ C compiler (required) #############################  
   
 # Create a Configure() environment for checking existence of required libraries and headers  
 conf = Configure(clone_env(env))  
   
 # Test that the compiler is working  
 if not conf.CheckFunc('printf'):  
   print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])  
   sys.exit(1)  
   
 if conf.CheckFunc('gethostname'):  
   conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])  
   
 ############ python libraries (required) #######################  
   
 conf.env.AppendUnique(CPPPATH       = [env['python_path']])  
 conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  
 conf.env.AppendUnique(LIBS      = [env['python_libs']])  
   
 conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs  
   
 if not conf.CheckCHeader('Python.h'):  
   print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])  
   sys.exit(1)  
 if not conf.CheckFunc('Py_Main'):  
   print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])  
   sys.exit(1)  
   
 ############ boost (required) ##################################  
   
 conf.env.AppendUnique(CPPPATH       = [env['boost_path']])  
 conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  
 conf.env.AppendUnique(LIBS      = [env['boost_libs']])  
399    
400  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs  ######################## Add some custom builders ############################
401    
402  if not conf.CheckCXXHeader('boost/python.hpp'):  if env['pythoncmd']=='python':
403    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])      py_builder = Builder(action = build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
   sys.exit(1)  
 if not conf.CheckFunc('PyObject_SetAttr'):  
   print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])  
   sys.exit(1)  
   
 # Commit changes to environment  
 env = conf.Finish()  
   
 ############ VTK (optional) ####################################  
   
 if env['usevtk']:  
   try:  
     import vtk  
     env['usevtk'] = 1  
   except ImportError:  
     env['usevtk'] = 0  
   
 # Add VTK to environment env if it was found  
 if env['usevtk']:  
   env.Append(CPPDEFINES = ['USE_VTK'])  
   
 ############ NetCDF (optional) #################################  
   
 conf = Configure(clone_env(env))  
   
 if env['usenetcdf']:  
   conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])  
   conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs  
   
 if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  
 if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  
   
 # Add NetCDF to environment env if it was found  
 if env['usenetcdf']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['USE_NETCDF'])  
 else:  
   conf.Finish()  
   
 ############ PAPI (optional) ###################################  
   
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env))  
   
 if env['usepapi']:  
   conf.env.AppendUnique(CPPPATH = [env['papi_path']])  
   conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['papi_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs  
   
 if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  
 if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  
   
 # Add PAPI to environment env if it was found  
 if env['usepapi']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['BLOCKPAPI'])  
404  else:  else:
405    conf.Finish()      py_builder = Builder(action = env['pythoncmd']+" scripts/py_comp.py $SOURCE $TARGET", suffix = '.pyc', src_suffix = '.py', single_source=True)
406    env.Append(BUILDERS = {'PyCompile' : py_builder});
 ############ MKL (optional) ####################################  
   
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env))  
   
 if env['usemkl']:  
   conf.env.AppendUnique(CPPPATH = [env['mkl_path']])  
   conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['mkl_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs  
   
 if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  
 if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0  
   
 # Add MKL to environment env if it was found  
 if env['usemkl']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['MKL'])  
 else:  
   conf.Finish()  
   
 ############ UMFPACK (optional) ################################  
407    
408  # Start a new configure environment that reflects what we've already found  runUnitTest_builder = Builder(action = runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
409  conf = Configure(clone_env(env))  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
410    
411  if env['useumfpack']:  runPyUnitTest_builder = Builder(action = runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
412    conf.env.AppendUnique(CPPPATH = [env['ufc_path']])  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
   conf.env.AppendUnique(CPPPATH = [env['umf_path']])  
   conf.env.AppendUnique(LIBPATH = [env['umf_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['umf_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['amd_path']])  
   conf.env.AppendUnique(LIBPATH = [env['amd_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['amd_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['blas_path']])  
   conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['blas_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs  
   
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
 if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  
   
 # Add UMFPACK to environment env if it was found  
 if env['useumfpack']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['UMFPACK'])  
 else:  
   conf.Finish()  
413    
414  ############ Add the compiler flags ############################  epstopdfbuilder = Builder(action = eps2pdf, suffix='.pdf', src_suffix='.eps', single_source=True)
415    env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
416    
417  # Enable debug by choosing either cc_debug or cc_optim  ############################ Dependency checks ###############################
 if env['usedebug']:  
   env.Append(CCFLAGS        = env['cc_debug'])  
   env.Append(CCFLAGS        = env['omp_debug'])  
 else:  
   env.Append(CCFLAGS        = env['cc_optim'])  
   env.Append(CCFLAGS        = env['omp_optim'])  
418    
419  # Always use cc_flags  ######## Compiler
420  env.Append(CCFLAGS      = env['cc_flags'])  env=checkCompiler(env)
 env.Append(LIBS         = [env['omp_libs']])  
   
 ############ MPI (optional) ####################################  
   
 # Create a modified environment for MPI programs (identical to env if usempi=no)  
 env_mpi = clone_env(env)  
   
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env_mpi))  
   
 if env_mpi['usempi']:  
   conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])  
   conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs  
   
 if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  
 if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  
   
 # Add MPI to environment env_mpi if it was found  
 if env_mpi['usempi']:  
   env_mpi = conf.Finish()  
   env_mpi.Append(CPPDEFINES = ['PASO_MPI', 'MPI_NO_CPPBIND', env_mpi['MPICH_IGNORE_CXX_SEEK']])  
 else:  
   conf.Finish()  
421    
422  env['usempi'] = env_mpi['usempi']  ######## Python headers & library (required)
423    env=checkPython(env)
424    
425  ############ ParMETIS (optional) ###############################  ######## boost & boost-python (required)
426    env=checkBoost(env)
427    
428  # Start a new configure environment that reflects what we've already found  ######## numpy (required) and numpy headers (optional)
429  conf = Configure(clone_env(env_mpi))  env=checkNumpy(env)
430    
431  if not env_mpi['usempi']: env_mpi['useparmetis'] = 0  ######## CppUnit (required for tests)
432    env=checkCppUnit(env)
433    
434  if env_mpi['useparmetis']:  ######## optional python modules (sympy, pyproj)
435    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])  env=checkOptionalModules(env)
   conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs  
436    
437  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  ######## optional dependencies (netCDF, PAPI, MKL, UMFPACK, Lapack, Silo, ...)
438  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  env=checkOptionalLibraries(env)
439    
440  # Add ParMETIS to environment env_mpi if it was found  ######## PDFLaTeX (for documentation)
441  if env_mpi['useparmetis']:  env=checkPDFLatex(env)
   env_mpi = conf.Finish()  
   env_mpi.Append(CPPDEFINES = ['USE_PARMETIS'])  
 else:  
   conf.Finish()  
442    
443  env['useparmetis'] = env_mpi['useparmetis']  # keep some of our install paths first in the list for the unit tests
444    env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
445    env.PrependENVPath('PYTHONPATH', prefix)
446    env['ENV']['ESCRIPT_ROOT'] = prefix
447    
448  ############ Now we switch on Warnings as errors ###############  if not env['verbose']:
449        env['CCCOMSTR'] = "Compiling $TARGET"
450        env['CXXCOMSTR'] = "Compiling $TARGET"
451        env['SHCCCOMSTR'] = "Compiling $TARGET"
452        env['SHCXXCOMSTR'] = "Compiling $TARGET"
453        env['ARCOMSTR'] = "Linking $TARGET"
454        env['LINKCOMSTR'] = "Linking $TARGET"
455        env['SHLINKCOMSTR'] = "Linking $TARGET"
456        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
457        env['BIBTEXCOMSTR'] = "Generating bibliography $TARGET"
458        env['MAKEINDEXCOMSTR'] = "Generating index $TARGET"
459        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
460        #Progress(['Checking -\r', 'Checking \\\r', 'Checking |\r', 'Checking /\r'], interval=17)
461    
462    ####################### Configure the subdirectories #########################
463    
464    # remove obsolete files
465    if not env['usempi']:
466        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPI')))
467        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPIredirect')))
468    
469    from grouptest import *
470    TestGroups=[]
471    
472    # keep an environment without warnings-as-errors
473    dodgy_env=env.Clone()
474    
475    # now add warnings-as-errors flags. This needs to be done after configuration
476    # because the scons test files have warnings in them
477    if ((fatalwarning != '') and (env['werror'])):
478        env.Append(CCFLAGS = fatalwarning)
479    
480  #this needs to be done after configuration because the scons test files have warnings in them  Export(
481      ['env',
482       'dodgy_env',
483       'IS_WINDOWS',
484       'TestGroups'
485      ]
486    )
487    
488  if ((fatalwarning != "") and (env['usewarnings'])):  env.SConscript(dirs = ['tools/escriptconvert'], variant_dir='$BUILD_DIR/$PLATFORM/tools/escriptconvert', duplicate=0)
489    env.Append(CCFLAGS        = fatalwarning)  env.SConscript(dirs = ['paso/src'], variant_dir='$BUILD_DIR/$PLATFORM/paso', duplicate=0)
490    env_mpi.Append(CCFLAGS        = fatalwarning)  env.SConscript(dirs = ['weipa/src'], variant_dir='$BUILD_DIR/$PLATFORM/weipa', duplicate=0)
491    env.SConscript(dirs = ['escript/src'], variant_dir='$BUILD_DIR/$PLATFORM/escript', duplicate=0)
492  ############ Summarize our environment #########################  env.SConscript(dirs = ['esysUtils/src'], variant_dir='$BUILD_DIR/$PLATFORM/esysUtils', duplicate=0)
493    env.SConscript(dirs = ['pasowrap/src'], variant_dir='$BUILD_DIR/$PLATFORM/pasowrap', duplicate=0)
494  print ""  env.SConscript(dirs = ['dudley/src'], variant_dir='$BUILD_DIR/$PLATFORM/dudley', duplicate=0)
495  print "Summary of configuration (see ./config.log for information)"  env.SConscript(dirs = ['finley/src'], variant_dir='$BUILD_DIR/$PLATFORM/finley', duplicate=0)
496  print " Using python libraries"  env.SConscript(dirs = ['ripley/src'], variant_dir='$BUILD_DIR/$PLATFORM/ripley', duplicate=0)
497  print " Using numarray"  env.SConscript(dirs = ['downunder/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/downunder', duplicate=0)
498  print " Using boost"  env.SConscript(dirs = ['modellib/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/modellib', duplicate=0)
499  if env['usenetcdf']: print "    Using NetCDF"  env.SConscript(dirs = ['pycad/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pycad', duplicate=0)
500  else: print "   Not using NetCDF"  env.SConscript(dirs = ['pythonMPI/src'], variant_dir='$BUILD_DIR/$PLATFORM/pythonMPI', duplicate=0)
501  if env['usevtk']: print "   Using VTK"  env.SConscript(dirs = ['doc'], variant_dir='$BUILD_DIR/$PLATFORM/doc', duplicate=0)
502  else: print "   Not using VTK"  env.SConscript(dirs = ['paso/profiling'], variant_dir='$BUILD_DIR/$PLATFORM/paso/profiling', duplicate=0)
 if env['usemkl']: print "   Using MKL"  
 else: print "   Not using MKL"  
 if env['useumfpack']: print "   Using UMFPACK"  
 else: print "   Not using UMFPACK"  
 if env['useopenmp']: print "    Using OpenMP"  
 else: print "   Not using OpenMP"  
 if env['usempi']: print "   Using MPI"  
 else: print "   Not using MPI"  
 if env['useparmetis']: print "  Using ParMETIS"  
 else: print "   Not using ParMETIS (requires MPI)"  
 if env['usepapi']: print "  Using PAPI"  
 else: print "   Not using PAPI"  
 if env['usedebug']: print " Compiling for debug"  
 else: print "   Not compiling for debug"  
 print " Installing in", prefix  
 if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"  
 else: print "   Not treating warnings as errors"  
 print ""  
   
 ############ Delete option-dependent files #####################  
   
 Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))  
 Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))  
 Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))  
 if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))  
503    
 ############ Add some custom builders ##########################  
504    
505  py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  ######################## Populate the buildvars file #########################
 env.Append(BUILDERS = {'PyCompile' : py_builder});  
506    
507  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  write_buildvars(env)
 env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  
508    
509  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  ################### Targets to build and install libraries ###################
 env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  
510    
511  ############ Build the subdirectories ##########################  target_init = env.Command(os.path.join(env['pyinstall'],'__init__.py'), None, Touch('$TARGET'))
512    env.Alias('target_init', [target_init])
513    # delete buildvars upon cleanup
514    env.Clean('target_init', os.path.join(env['libinstall'], 'buildvars'))
515    
516  Export(  # The headers have to be installed prior to build in order to satisfy
517    ["env",  # #include <paso/Common.h>
518     "env_mpi",  env.Alias('build_esysUtils', ['install_esysUtils_headers', 'build_esysUtils_lib'])
519     "clone_env",  env.Alias('install_esysUtils', ['build_esysUtils', 'install_esysUtils_lib'])
    "IS_WINDOWS_PLATFORM"  
    ]  
   )  
   
 env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  
 env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  
 env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  
 env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  
 env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  
 env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)  
 env.SConscript(dirs = ['doc'], build_dir='build/$PLATFORM/doc', duplicate=0)  
 env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  
 env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  
 env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  
 env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)  
   
 ############ Remember what optimizations we used ###############  
   
 remember_list = []  
   
 if env['usedebug']:  
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))  
   
 if env['usempi']:  
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))  
520    
521  if env['omp_optim'] != '':  env.Alias('build_paso', ['install_paso_headers', 'build_paso_lib'])
522    remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))  env.Alias('install_paso', ['build_paso', 'install_paso_lib'])
523    
524  env.Alias('remember_options', remember_list)  env.Alias('build_escript', ['install_escript_headers', 'build_escript_lib', 'build_escriptcpp_lib'])
525    env.Alias('install_escript', ['build_escript', 'install_escript_lib', 'install_escriptcpp_lib', 'install_escript_py'])
526    
527  ############ Targets to build and install libraries ############  env.Alias('build_pasowrap', ['install_pasowrap_headers', 'build_pasowrap_lib', 'build_pasowrapcpp_lib'])
528    env.Alias('install_pasowrap', ['build_pasowrap', 'install_pasowrap_lib', 'install_pasowrapcpp_lib', 'install_pasowrap_py'])
529    
530  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  env.Alias('build_dudley', ['install_dudley_headers', 'build_dudley_lib', 'build_dudleycpp_lib'])
531  env.Alias('target_init', [target_init])  env.Alias('install_dudley', ['build_dudley', 'install_dudley_lib', 'install_dudleycpp_lib', 'install_dudley_py'])
532    
533  # The headers have to be installed prior to build in order to satisfy #include <paso/Common.h>  env.Alias('build_finley', ['install_finley_headers', 'build_finley_lib', 'build_finleycpp_lib'])
534  env.Alias('build_esysUtils', ['target_install_esysUtils_headers', 'target_esysUtils_a'])  env.Alias('install_finley', ['build_finley', 'install_finley_lib', 'install_finleycpp_lib', 'install_finley_py'])
 env.Alias('install_esysUtils', ['build_esysUtils', 'target_install_esysUtils_a'])  
535    
536  env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])  env.Alias('build_ripley', ['install_ripley_headers', 'build_ripley_lib', 'build_ripleycpp_lib'])
537  env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])  env.Alias('install_ripley', ['build_ripley', 'install_ripley_lib', 'install_ripleycpp_lib', 'install_ripley_py'])
538    
539  env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])  env.Alias('build_weipa', ['install_weipa_headers', 'build_weipa_lib', 'build_weipacpp_lib'])
540  env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])  env.Alias('install_weipa', ['build_weipa', 'install_weipa_lib', 'install_weipacpp_lib', 'install_weipa_py'])
541    
542  env.Alias('build_finley', ['target_install_finley_headers', 'target_finley_so', 'target_finleycpp_so'])  env.Alias('build_escriptreader', ['install_weipa_headers', 'build_escriptreader_lib'])
543  env.Alias('install_finley', ['build_finley', 'target_install_finley_so', 'target_install_finleycpp_so', 'target_install_finley_py'])  env.Alias('install_escriptreader', ['build_escriptreader', 'install_escriptreader_lib'])
544    
545  # Now gather all the above into a couple easy targets: build_all and install_all  # Now gather all the above into some easy targets: build_all and install_all
546  build_all_list = []  build_all_list = []
547  build_all_list += ['build_esysUtils']  build_all_list += ['build_esysUtils']
548  build_all_list += ['build_paso']  build_all_list += ['build_paso']
549  build_all_list += ['build_escript']  build_all_list += ['build_escript']
550    build_all_list += ['build_pasowrap']
551    build_all_list += ['build_dudley']
552  build_all_list += ['build_finley']  build_all_list += ['build_finley']
553  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  build_all_list += ['build_ripley']
554  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_finley_wrapper']  build_all_list += ['build_weipa']
555    if not IS_WINDOWS: build_all_list += ['build_escriptreader']
556    if env['usempi']:   build_all_list += ['build_pythonMPI']
557    build_all_list += ['build_escriptconvert']
558  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
559    
560  install_all_list = []  install_all_list = []
# Line 637  install_all_list += ['target_init'] Line 562  install_all_list += ['target_init']
562  install_all_list += ['install_esysUtils']  install_all_list += ['install_esysUtils']
563  install_all_list += ['install_paso']  install_all_list += ['install_paso']
564  install_all_list += ['install_escript']  install_all_list += ['install_escript']
565    install_all_list += ['install_pasowrap']
566    install_all_list += ['install_dudley']
567  install_all_list += ['install_finley']  install_all_list += ['install_finley']
568  install_all_list += ['target_install_pyvisi_py']  install_all_list += ['install_ripley']
569  install_all_list += ['target_install_modellib_py']  install_all_list += ['install_weipa']
570  install_all_list += ['target_install_pycad_py']  if not IS_WINDOWS: install_all_list += ['install_escriptreader']
571  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  install_all_list += ['install_downunder_py']
572  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_finley_wrapper']  install_all_list += ['install_modellib_py']
573  install_all_list += ['remember_options']  install_all_list += ['install_pycad_py']
574    if env['usempi']:   install_all_list += ['install_pythonMPI']
575    install_all_list += ['install_escriptconvert']
576  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
577    
578  # Default target is install  # Default target is install
579  env.Default('install_all')  env.Default('install_all')
580    
581  ############ Targets to build and run the test suite ###########  ################## Targets to build and run the test suite ###################
   
 env.Alias('build_cppunittest', ['target_install_cppunittest_headers', 'target_cppunittest_a'])  
 env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])  
 env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])  
 env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])  
582    
583  ############ Targets to build the documentation ################  if not env['cppunit']:
584        test_msg = env.Command('.dummy.', None, '@echo "Cannot run C/C++ unit tests, CppUnit not found!";exit 1')
585        env.Alias('run_tests', test_msg)
586        env.Alias('build_tests', '')
587    env.Alias('run_tests', ['install_all'])
588    env.Alias('all_tests', ['install_all', 'run_tests', 'py_tests'])
589    env.Alias('build_full',['install_all','build_tests','build_py_tests'])
590    env.Alias('build_PasoTests','$BUILD_DIR/$PLATFORM/paso/profiling/PasoTests')
591    
592    ##################### Targets to build the documentation #####################
593    
594    env.Alias('pdfdocs',['user_pdf', 'install_pdf', 'cookbook_pdf', 'inversion_pdf'])
595    env.Alias('basedocs', ['pdfdocs','examples_tarfile', 'examples_zipfile', 'api_doxygen'])
596    env.Alias('docs', ['basedocs', 'sphinxdoc'])
597    env.Alias('release_prep', ['docs', 'install_all'])
598    env.Alias('release_prep_old', ['basedocs', 'api_epydoc', 'install_all'])
599    
600    # The test scripts are always generated, this target allows us to
601    # generate the testscripts without doing a full build
602    env.Alias('testscripts',[])
603    
604    if not IS_WINDOWS:
605        generateTestScripts(env, TestGroups)
606    
607    
608    
609    ######################## Summarize our environment ###########################
610    def print_summary():
611        print("")
612        print("*** Config Summary (see config.log and lib/buildvars for details) ***")
613        print("Escript/Finley revision %s"%global_revision)
614        print("  Install prefix:  %s"%env['prefix'])
615        print("          Python:  %s"%sysconfig.PREFIX)
616        print("           boost:  %s"%env['boost_prefix'])
617        print("           numpy:  YES")
618        if env['usempi']:
619            print("             MPI:  YES (flavour: %s)"%env['mpi'])
620        else:
621            print("             MPI:  DISABLED")
622        if env['uselapack']:
623            print("          LAPACK:  YES (flavour: %s)"%env['lapack'])
624        else:
625            print("          LAPACK:  DISABLED")
626        d_list=[]
627        e_list=[]
628        for i in 'debug','openmp','boomeramg','mkl','netcdf','papi','parmetis','pyproj','silo','sympy','umfpack','visit','vsl_random':
629            if env[i]: e_list.append(i)
630            else: d_list.append(i)
631        for i in e_list:
632            print("%16s:  YES"%i)
633        for i in d_list:
634            print("%16s:  DISABLED"%i)
635        if env['cppunit']:
636            print("         CppUnit:  FOUND")
637        else:
638            print("         CppUnit:  NOT FOUND")
639        if env['gmsh']=='m':
640            print("            gmsh:  FOUND, MPI-ENABLED")
641        elif env['gmsh']=='s':
642            print("            gmsh:  FOUND")
643        else:
644            print("            gmsh:  NOT FOUND")
645        if env['numpy_h']:
646            print("   numpy headers:  FOUND")
647        else:
648            print("   numpy headers:  NOT FOUND")
649        print("   vsl_random:  %s"%env['vsl_random'])
650            
651        if ((fatalwarning != '') and (env['werror'])):
652            print("  Treating warnings as errors")
653        else:
654            print("  NOT treating warnings as errors")
655        print("")
656        for w in env['warnings']:
657            print("WARNING: %s"%w)
658    
659  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])  atexit.register(print_summary)
660    

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