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revision 2027 by phornby, Tue Nov 11 02:52:24 2008 UTC revision 4640 by jfenwick, Fri Jan 31 00:56:51 2014 UTC
# Line 1  Line 1 
1    ##############################################################################
 ########################################################  
2  #  #
3  # Copyright (c) 2003-2008 by University of Queensland  # Copyright (c) 2003-2013 by University of Queensland
4  # Earth Systems Science Computational Center (ESSCC)  # http://www.uq.edu.au
 # http://www.uq.edu.au/esscc  
5  #  #
6  # Primary Business: Queensland, Australia  # Primary Business: Queensland, Australia
7  # Licensed under the Open Software License version 3.0  # Licensed under the Open Software License version 3.0
8  # http://www.opensource.org/licenses/osl-3.0.php  # http://www.opensource.org/licenses/osl-3.0.php
9  #  #
10  ########################################################  # Development until 2012 by Earth Systems Science Computational Center (ESSCC)
11    # Development since 2012 by School of Earth Sciences
12    #
13  EnsureSConsVersion(0,96,91)  ##############################################################################
 EnsurePythonVersion(2,3)  
   
 import sys, os, re, socket  
   
 # Add our extensions  
 if os.path.isdir('scons'): sys.path.append('scons')  
 import scons_extensions  
14    
15  # Use /usr/lib64 if available, else /usr/lib  EnsureSConsVersion(0,98,1)
16  usr_lib = '/usr/lib'  EnsurePythonVersion(2,5)
 if os.path.isfile('/usr/lib64/libc.so'): usr_lib = '/usr/lib64'  
17    
18  # The string python2.4 or python2.5  import atexit, sys, os, platform, re
19  python_version = 'python%s.%s' % (sys.version_info[0], sys.version_info[1])  from distutils import sysconfig
20    from dependencies import *
21    from site_init import *
22    
23    # Version number to check for in options file. Increment when new features are
24    # added or existing options changed.
25    REQUIRED_OPTS_VERSION=201
26    
27  # MS Windows support, many thanks to PH  # MS Windows support, many thanks to PH
28  IS_WINDOWS_PLATFORM = (os.name== "nt")  IS_WINDOWS = (os.name == 'nt')
   
 prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)  
   
 # Read configuration options from file scons/<hostname>_options.py  
 hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  
 tmp = os.path.join("scons",hostname+"_options.py")  
 options_file = ARGUMENTS.get('options_file', tmp)  
 if not os.path.isfile(options_file):  
   options_file = False  
   print "Options file not found (expected '%s')" % tmp  
 else:  
   print "Options file is", options_file  
29    
30  # Load options file and command-line arguments  IS_OSX = (os.uname()[0] == 'Darwin')
 opts = Options(options_file, ARGUMENTS)  
31    
32  ############ Load build options ################################  ########################## Determine options file ############################
33    # 1. command line
34    # 2. scons/<hostname>_options.py
35    # 3. name as part of a cluster
36    options_file=ARGUMENTS.get('options_file', None)
37    if not options_file:
38        ext_dir = os.path.join(os.getcwd(), 'scons')
39        hostname = platform.node().split('.')[0]
40        for name in hostname, effectiveName(hostname):
41            mangledhostname = re.sub('[^0-9a-zA-Z]', '_', hostname)
42            options_file = os.path.join(ext_dir, mangledhostname+'_options.py')
43            if os.path.isfile(options_file): break
44    
45  opts.AddOptions(  if not os.path.isfile(options_file):
46  # Where to install esys stuff      print("\nWARNING:\nOptions file %s" % options_file)
47    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),      print("not found! Default options will be used which is most likely suboptimal.")
48    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),      print("We recommend that you copy one of the TEMPLATE files in the scons/")
49    ('bininstall', 'where the esys binaries will be installed',            os.path.join(prefix,'bin')),      print("subdirectory and customize it to your needs.\n")
50    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),      options_file = None
51    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),  
52  # Compilation options  ############################### Build options ################################
53    BoolOption('dodebug', 'For backwards compatibility', 'no'),  
54    BoolOption('usedebug', 'Do you want a debug build?', 'no'),  default_prefix='/usr'
55    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),  mpi_flavours=('no', 'none', 'MPT', 'MPICH', 'MPICH2', 'OPENMPI', 'INTELMPI')
56    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),  lapack_flavours=('none', 'clapack', 'mkl')
57    ('win_cc_name', 'windows C compiler name if needed', 'msvc'),  
58    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below  vars = Variables(options_file, ARGUMENTS)
59    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),  vars.AddVariables(
60    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),    PathVariable('options_file', 'Path to options file', options_file, PathVariable.PathIsFile),
61    ('cc_debug', 'C compiler debug flags to use', '-DEFAULT_3'),    PathVariable('prefix', 'Installation prefix', Dir('#.').abspath, PathVariable.PathIsDirCreate),
62    ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),    PathVariable('build_dir', 'Top-level build directory', Dir('#/build').abspath, PathVariable.PathIsDirCreate),
63    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),    BoolVariable('verbose', 'Output full compile/link lines', False),
64    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),  # Compiler/Linker options
65    ('cc_extra', 'Extra C/C++ flags', ''),    ('cxx', 'Path to C++ compiler', 'default'),
66      ('cc_flags', 'Base C++ compiler flags', 'default'),
67      ('cc_optim', 'Additional C++ flags for a non-debug build', 'default'),
68      ('cc_debug', 'Additional C++ flags for a debug build', 'default'),
69      ('cxx_extra', 'Extra C++ compiler flags', ''),
70    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
71    ('sys_libs', 'System libraries to link with', []),    BoolVariable('werror','Treat compiler warnings as errors', True),
72    ('ar_flags', 'Static library archiver flags to use', ''),    BoolVariable('debug', 'Compile with debug flags', False),
73    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'yes'),    BoolVariable('openmp', 'Compile parallel version using OpenMP', False),
74    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),    ('omp_flags', 'OpenMP compiler flags', 'default'),
75    BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),    ('omp_ldflags', 'OpenMP linker flags', 'default'),
76  # Python  # Mandatory libraries
77    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),    ('boost_prefix', 'Prefix/Paths of boost installation', default_prefix),
78    ('python_lib_path', 'Path to Python libs', usr_lib),    ('boost_libs', 'Boost libraries to link with', ['boost_python-mt']),
79    ('python_libs', 'Python libraries to link with', [python_version]),  # Mandatory for tests
80    ('python_cmd', 'Python command', 'python'),    ('cppunit_prefix', 'Prefix/Paths of CppUnit installation', default_prefix),
81  # Boost    ('cppunit_libs', 'CppUnit libraries to link with', ['cppunit']),
82    ('boost_path', 'Path to Boost includes', '/usr/include'),  # Optional libraries and options
83    ('boost_lib_path', 'Path to Boost libs', usr_lib),    EnumVariable('mpi', 'Compile parallel version using MPI flavour', 'none', allowed_values=mpi_flavours),
84    ('boost_libs', 'Boost libraries to link with', ['boost_python']),    ('mpi_prefix', 'Prefix/Paths of MPI installation', default_prefix),
85  # NetCDF    ('mpi_libs', 'MPI shared libraries to link with', ['mpi']),
86    BoolOption('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),    BoolVariable('netcdf', 'Enable netCDF file support', False),
87    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),    ('netcdf_prefix', 'Prefix/Paths of netCDF installation', default_prefix),
88    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),    ('netcdf_libs', 'netCDF libraries to link with', ['netcdf_c++', 'netcdf']),
89    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),    BoolVariable('parmetis', 'Enable ParMETIS (requires MPI)', False),
90  # MPI    ('parmetis_prefix', 'Prefix/Paths of ParMETIS installation', default_prefix),
91    BoolOption('useMPI', 'For backwards compatibility', 'no'),    ('parmetis_libs', 'ParMETIS libraries to link with', ['parmetis', 'metis']),
92    BoolOption('usempi', 'Compile parallel version using MPI', 'no'),    BoolVariable('papi', 'Enable PAPI', False),
93    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),    ('papi_prefix', 'Prefix/Paths to PAPI installation', default_prefix),
   ('mpi_path', 'Path to MPI includes', '/usr/include'),  
   ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),  
   ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),  
   ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),  
 # ParMETIS  
   BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),  
   ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),  
   ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),  
   ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),  
 # PAPI  
   BoolOption('usepapi', 'switch on/off the usage of PAPI', 'no'),  
   ('papi_path', 'Path to PAPI includes', '/usr/include'),  
   ('papi_lib_path', 'Path to PAPI libs', usr_lib),  
94    ('papi_libs', 'PAPI libraries to link with', ['papi']),    ('papi_libs', 'PAPI libraries to link with', ['papi']),
95    BoolOption('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),    BoolVariable('papi_instrument_solver', 'Use PAPI to instrument each iteration of the solver', False),
96  # MKL    BoolVariable('mkl', 'Enable the Math Kernel Library', False),
97    BoolOption('usemkl', 'switch on/off the usage of MKL', 'no'),    ('mkl_prefix', 'Prefix/Paths to MKL installation', default_prefix),
98    ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver','mkl_em64t','guide','pthread']),
99    ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),    BoolVariable('umfpack', 'Enable UMFPACK', False),
100    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),    ('umfpack_prefix', 'Prefix/Paths to UMFPACK installation', default_prefix),
101  # UMFPACK    ('umfpack_libs', 'UMFPACK libraries to link with', ['umfpack']),
102    BoolOption('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),    BoolVariable('boomeramg', 'Enable BoomerAMG', False),
103    ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),    ('boomeramg_prefix', 'Prefix/Paths to BoomerAMG installation', default_prefix),
104    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('boomeramg_libs', 'BoomerAMG libraries to link with', ['boomeramg']),
105    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    EnumVariable('lapack', 'Set LAPACK flavour', 'none', allowed_values=lapack_flavours),
106    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('lapack_prefix', 'Prefix/Paths to LAPACK installation', default_prefix),
107  # AMD (used by UMFPACK)    ('lapack_libs', 'LAPACK libraries to link with', []),
108    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    BoolVariable('silo', 'Enable the Silo file format in weipa', False),
109    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('silo_prefix', 'Prefix/Paths to Silo installation', default_prefix),
110    ('amd_libs', 'AMD libraries to link with', ['amd']),    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
111  # BLAS (used by UMFPACK)    BoolVariable('visit', 'Enable the VisIt simulation interface', False),
112    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),    ('visit_prefix', 'Prefix/Paths to VisIt installation', default_prefix),
113    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    ('visit_libs', 'VisIt libraries to link with', ['simV2']),
114    ('blas_libs', 'BLAS libraries to link with', ['blas']),    BoolVariable('vsl_random', 'Use VSL from intel for random data', False),
115  # An option for specifying the compiler tools set (see windows branch).  # Advanced settings
116    ('tools_names', 'allow control over the tools in the env setup', ['intelc'])    #dudley_assemble_flags = -funroll-loops      to actually do something
117      ('dudley_assemble_flags', 'compiler flags for some dudley optimisations', ''),
118      # To enable passing function pointers through python
119      BoolVariable('iknowwhatimdoing', 'Allow non-standard C', False),
120      # An option for specifying the compiler tools (see windows branch)
121      ('tools_names', 'Compiler tools to use', ['default']),
122      ('env_export', 'Environment variables to be passed to tools',[]),
123      EnumVariable('forcelazy', 'For testing use only - set the default value for autolazy', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
124      EnumVariable('forcecollres', 'For testing use only - set the default value for force resolving collective ops', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
125      # finer control over library building, intel aggressive global optimisation
126      # works with dynamic libraries on windows.
127      ('build_shared', 'Build dynamic libraries only', False),
128      ('sys_libs', 'Extra libraries to link with', []),
129      ('escript_opts_version', 'Version of options file (do not specify on command line)'),
130      ('SVN_VERSION', 'Do not use from options file', -2),
131      ('pythoncmd', 'which python to compile with','python'),
132      ('usepython3', 'Is this a python3 build? (experimental)', False),
133      ('pythonlibname', 'Name of the python library to link. (This is found automatically for python2.X.)', ''),
134      ('pythonlibpath', 'Path to the python library. (You should not need to set this unless your python has moved)',''),
135      ('pythonincpath','Path to python include files. (You should not need to set this unless your python has moved',''),
136      BoolVariable('BADPYTHONMACROS','Extra \#include to get around a python bug.', True),
137  )  )
138    
139  ############ Specify which compilers to use ####################  ##################### Create environment and help text #######################
140    
141  # intelc uses regular expressions improperly and emits a warning about  # Intel's compiler uses regular expressions improperly and emits a warning
142  # failing to find the compilers.  This warning can be safely ignored.  # about failing to find the compilers. This warning can be safely ignored.
143    
144  if IS_WINDOWS_PLATFORM:  # PATH is needed so the compiler, linker and tools are found if they are not
145        env = Environment(options = opts)  # in default locations.
146        env = Environment(tools = ['default'] + env['tools_names'],  env = Environment(tools = ['default'], options = vars,
147                          options = opts)                    ENV = {'PATH': os.environ['PATH']})
148    
149    # set the vars for clang
150    def mkclang(env):
151        env['CXX']='clang++'
152    
153    if env['tools_names'] != 'default':
154        zz=env['tools_names']
155        if 'clang' in zz:
156            zz.remove('clang')
157            zz.insert(0, mkclang)
158        env = Environment(tools = ['default'] + env['tools_names'], options = vars,
159                          ENV = {'PATH' : os.environ['PATH']})
160    
161    if options_file:
162        opts_valid=False
163        if 'escript_opts_version' in env.Dictionary() and \
164            int(env['escript_opts_version']) >= REQUIRED_OPTS_VERSION:
165                opts_valid=True
166        if opts_valid:
167            print("Using options in %s." % options_file)
168        else:
169            print("\nOptions file %s" % options_file)
170            print("is outdated! Please update the file by examining one of the TEMPLATE")
171            print("files in the scons/ subdirectory and setting escript_opts_version to %d.\n"%REQUIRED_OPTS_VERSION)
172            Exit(1)
173    
174    # Generate help text (scons -h)
175    Help(vars.GenerateHelpText(env))
176    
177    # Check for superfluous options
178    if len(vars.UnknownVariables())>0:
179        for k in vars.UnknownVariables():
180            print("Unknown option '%s'" % k)
181        Exit(1)
182    
183    # create dictionary which will be populated with info for buildvars file
184    env['buildvars']={}
185    # create list which will be populated with warnings if there are any
186    env['warnings']=[]
187    
188    #################### Make sure install directories exist #####################
189    
190    env['BUILD_DIR']=Dir(env['build_dir']).abspath
191    prefix=Dir(env['prefix']).abspath
192    env['buildvars']['prefix']=prefix
193    env['incinstall'] = os.path.join(prefix, 'include')
194    env['bininstall'] = os.path.join(prefix, 'bin')
195    env['libinstall'] = os.path.join(prefix, 'lib')
196    env['pyinstall']  = os.path.join(prefix, 'esys')
197    if not os.path.isdir(env['bininstall']):
198        os.makedirs(env['bininstall'])
199    if not os.path.isdir(env['libinstall']):
200        os.makedirs(env['libinstall'])
201    if not os.path.isdir(env['pyinstall']):
202        os.makedirs(env['pyinstall'])
203    
204    env.Append(CPPPATH = [env['incinstall']])
205    env.Append(LIBPATH = [env['libinstall']])
206    
207    ################# Fill in compiler options if not set above ##################
208    
209    if env['cxx'] != 'default': env['CXX']=env['cxx']
210    
211    # version >=9 of intel C++ compiler requires use of icpc to link in C++
212    # runtimes (icc does not)
213    if not IS_WINDOWS and os.uname()[4]=='ia64' and env['CXX']=='icpc':
214        env['LINK'] = env['CXX']
215    
216    # default compiler/linker options
217    cc_flags = ''
218    cc_optim = ''
219    cc_debug = ''
220    omp_flags = ''
221    omp_ldflags = ''
222    fatalwarning = '' # switch to turn warnings into errors
223    sysheaderopt = '' # how to indicate that a header is a system header
224    
225    # env['CC'] might be a full path
226    cc_name=os.path.basename(env['CXX'])
227    
228    if cc_name == 'icpc':
229        # Intel compiler
230        # #1875: offsetof applied to non-POD types is nonstandard (in boost)
231        # removed -std=c99 because icpc doesn't like it and we aren't using c anymore
232        cc_flags    = "-fPIC -w2 -wd1875 -Wno-unknown-pragmas -DBLOCKTIMER -DCORE_ID1"
233        cc_optim    = "-O3 -ftz -fno-alias -ipo -xHost"
234        cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
235        omp_flags   = "-openmp"
236        omp_ldflags = "-openmp -openmp_report=1"
237        fatalwarning = "-Werror"
238    elif cc_name[:3] == 'g++':
239        # GNU C on any system
240        # note that -ffast-math is not used because it breaks isnan(),
241        # see mantis #691
242        cc_flags     = "-pedantic -Wall -fPIC -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"
243        cc_optim     = "-O3"
244        cc_debug     = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
245        omp_flags    = "-fopenmp"
246        omp_ldflags  = "-fopenmp"
247        fatalwarning = "-Werror"
248        sysheaderopt = "-isystem"
249    elif cc_name == 'cl':
250        # Microsoft Visual C on Windows
251        cc_flags     = "/EHsc /MD /GR /wd4068 /D_USE_MATH_DEFINES /DDLL_NETCDF"
252        cc_optim     = "/O2 /Op /W3"
253        cc_debug     = "/Od /RTCcsu /ZI /DBOUNDS_CHECK"
254        fatalwarning = "/WX"
255    elif cc_name == 'icl':
256        # Intel C on Windows
257        cc_flags     = '/EHsc /GR /MD'
258        cc_optim     = '/fast /Oi /W3 /Qssp /Qinline-factor- /Qinline-min-size=0 /Qunroll'
259        cc_debug     = '/Od /RTCcsu /Zi /Y- /debug:all /Qtrapuv'
260        omp_flags    = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
261        omp_ldflags  = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
262    
263    env['sysheaderopt']=sysheaderopt
264    
265    # set defaults if not otherwise specified
266    if env['cc_flags']    == 'default': env['cc_flags'] = cc_flags
267    if env['cc_optim']    == 'default': env['cc_optim'] = cc_optim
268    if env['cc_debug']    == 'default': env['cc_debug'] = cc_debug
269    if env['omp_flags']   == 'default': env['omp_flags'] = omp_flags
270    if env['omp_ldflags'] == 'default': env['omp_ldflags'] = omp_ldflags
271    if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
272    if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])
273    
274    if env['BADPYTHONMACROS']: env.Append(CXXFLAGS = ' -DBADPYTHONMACROS')
275    
276    if env['usepython3']:
277        env.Append(CPPDEFINES=['ESPYTHON3'])
278    
279    # set up the autolazy values
280    if env['forcelazy'] == 'on':
281        env.Append(CPPDEFINES=['FAUTOLAZYON'])
282    elif env['forcelazy'] == 'off':
283        env.Append(CPPDEFINES=['FAUTOLAZYOFF'])
284    
285    # set up the collective resolve values
286    if env['forcecollres'] == 'on':
287        env.Append(CPPDEFINES=['FRESCOLLECTON'])
288    elif env['forcecollres'] == 'off':
289        env.Append(CPPDEFINES=['FRESCOLLECTOFF'])
290    
291    # allow non-standard C if requested
292    if env['iknowwhatimdoing']:
293        env.Append(CPPDEFINES=['IKNOWWHATIMDOING'])
294    
295    # Disable OpenMP if no flags provided
296    if env['openmp'] and env['omp_flags'] == '':
297       env['warnings'].append("OpenMP requested but no flags provided - disabling OpenMP!")
298       env['openmp'] = False
299    
300    if env['openmp']:
301        env.Append(CCFLAGS = env['omp_flags'])
302        if env['omp_ldflags'] != '': env.Append(LINKFLAGS = env['omp_ldflags'])
303  else:  else:
304     if socket.gethostname().split('.')[0] == 'service0':      env['omp_flags']=''
305        env = Environment(tools = ['default', 'intelc'], options = opts)      env['omp_ldflags']=''
    elif os.uname()[4]=='ia64':  
       env = Environment(tools = ['default', 'intelc'], options = opts)  
       if env['CXX'] == 'icpc':  
          env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)  
    else:  
       env = Environment(tools = ['default'], options = opts)  
 Help(opts.GenerateHelpText(env))  
   
 ############ Fill in compiler options if not set above #########  
   
 # Backwards compatibility: allow dodebug=yes and useMPI=yes  
 if env['dodebug']: env['usedebug'] = 1  
 if env['useMPI']: env['usempi'] = 1  
   
 # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  
 # For both C and C++ you get: cc_flags and either the optim flags or debug flags  
   
 if env["CC"] == "icc":  
   # Intel compilers  
   cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"  
   cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"  
   cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  
   omp_optim     = "-openmp -openmp_report0"  
   omp_debug     = "-openmp -openmp_report0"  
   omp_libs      = ['guide', 'pthread']  
   pedantic      = ""  
   fatalwarning      = ""        # Switch to turn warnings into errors  
 elif env["CC"] == "gcc":  
   # GNU C on any system  
   cc_flags      = "-Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER -isystem /usr/include/boost/ -isystem /usr/include/python2.5/ -Wno-sign-compare"  
   cc_optim      = "-O3"  
   cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  
   omp_optim     = ""  
   omp_debug     = ""  
   omp_libs      = []  
   pedantic      = "-pedantic-errors -Wno-long-long"  
   fatalwarning      = "-Werror"  
 elif env["CC"] == "cl":  
   # Microsoft Visual C on Windows  
   cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"  
   cc_optim      = "/O2 /Op /MT /W3"  
   cc_debug      = "/Od /RTC1 /MTd /ZI -DBOUNDS_CHECK"  
   omp_optim     = ""  
   omp_debug     = ""  
   omp_libs      = []  
   pedantic      = ""  
   fatalwarning      = ""  
 elif env["CC"] == "icl":  
   # intel C on Windows, see windows_intelc_options.py for a start  
   pedantic      = ""  
   fatalwarning      = ""  
   
 # If not specified in hostname_options.py then set them here  
 if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  
 if env["cc_optim"]  == "-DEFAULT_2": env['cc_optim'] = cc_optim  
 if env["cc_debug"]  == "-DEFAULT_3": env['cc_debug'] = cc_debug  
 if env["omp_optim"] == "-DEFAULT_4": env['omp_optim'] = omp_optim  
 if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  
 if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  
   
 # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  
 if not env["useopenmp"]:  
   env['omp_optim'] = ""  
   env['omp_debug'] = ""  
   env['omp_libs'] = []  
   
 if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0  
   
 ############ Copy environment variables into scons env #########  
   
 try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']  
 except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1  
   
 try: env['ENV']['PATH'] = os.environ['PATH']  
 except KeyError: pass  
   
 try: env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']  
 except KeyError: pass  
   
 try: env['ENV']['C_INCLUDE_PATH'] = os.environ['C_INCLUDE_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['LD_LIBRARY_PATH'] = os.environ['LD_LIBRARY_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['DISPLAY'] = os.environ['DISPLAY']  
 except KeyError: pass  
   
 try: env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']  
 except KeyError: pass  
306    
307  try: env['ENV']['HOME'] = os.environ['HOME']  env['buildvars']['openmp']=int(env['openmp'])
 except KeyError: pass  
   
 # Configure for test suite  
 env.PrependENVPath('PYTHONPATH', prefix)  
 env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
   
 env['ENV']['ESCRIPT_ROOT'] = prefix  
308    
309  ############ Set up paths for Configure() ######################  # add debug/non-debug compiler flags
310    env['buildvars']['debug']=int(env['debug'])
311  # Make a copy of an environment  if env['debug']:
312  # Use env.Clone if available, but fall back on env.Copy for older version of scons      env.Append(CCFLAGS = env['cc_debug'])
313  def clone_env(env):  else:
314    if 'Clone' in dir(env): return env.Clone()    # scons-0.98      env.Append(CCFLAGS = env['cc_optim'])
   else:                   return env.Copy() # scons-0.96  
   
 # Add cc option -I<Escript>/trunk/include  
 env.Append(CPPPATH      = [Dir('include')])  
   
 # Add cc option -L<Escript>/trunk/lib  
 env.Append(LIBPATH      = [Dir(env['libinstall'])])  
315    
316  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])  # always add cc_flags
317  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])  env.Append(CCFLAGS = env['cc_flags'])
318    
319  if env['usepedantic']: env.Append(CCFLAGS = pedantic)  # add system libraries
320    env.AppendUnique(LIBS = env['sys_libs'])
321    
322  # MS Windows  # determine svn revision
323  if IS_WINDOWS_PLATFORM:  global_revision=ARGUMENTS.get('SVN_VERSION', None)
324    env.PrependENVPath('PATH',    [env['boost_lib_path']])  if global_revision:
325    env.PrependENVPath('PATH',    [env['libinstall']])      global_revision = re.sub(':.*', '', global_revision)
326    if env['usenetcdf']:      global_revision = re.sub('[^0-9]', '', global_revision)
327      env.PrependENVPath('PATH',  [env['netCDF_lib_path']])      if global_revision == '': global_revision='-2'
328    else:
329      # Get the global Subversion revision number for the getVersion() method
330      try:
331        global_revision = os.popen('svnversion -n .').read()
332        global_revision = re.sub(':.*', '', global_revision)
333        global_revision = re.sub('[^0-9]', '', global_revision)
334        if global_revision == '': global_revision='-2'
335      except:
336        global_revision = '-1'
337    env['svn_revision']=global_revision
338    env['buildvars']['svn_revision']=global_revision
339    env.Append(CPPDEFINES=['SVN_VERSION='+global_revision])
340    
341    if IS_WINDOWS:
342        if not env['build_shared']:
343            env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
344            env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
345    
346    # VSL random numbers
347    env['buildvars']['vsl_random']=int(env['vsl_random'])
348    if env['vsl_random']:
349        env.Append(CPPDEFINES = ['MKLRANDOM'])
350    
351    env['IS_WINDOWS']=IS_WINDOWS
352    
353    ###################### Copy required environment vars ########################
354    
355    # Windows doesn't use LD_LIBRARY_PATH but PATH instead
356    if IS_WINDOWS:
357        LD_LIBRARY_PATH_KEY='PATH'
358        env['ENV']['LD_LIBRARY_PATH']=''
359    else:
360        LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'
361    
362  env.Append(ARFLAGS = env['ar_flags'])  env['LD_LIBRARY_PATH_KEY']=LD_LIBRARY_PATH_KEY
363    
364  # Get the global Subversion revision number for getVersion() method  # the following env variables are exported for the unit tests
 try:  
    global_revision = os.popen("svnversion -n .").read()  
    global_revision = re.sub(":.*", "", global_revision)  
    global_revision = re.sub("[^0-9]", "", global_revision)  
 except:  
    global_revision="-1"  
 if global_revision == "": global_revision="-2"  
 env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])  
365    
366  ############ numarray (required) ###############################  for key in 'OMP_NUM_THREADS', 'ESCRIPT_NUM_PROCS', 'ESCRIPT_NUM_NODES':
367        try:
368            env['ENV'][key] = os.environ[key]
369        except KeyError:
370            env['ENV'][key] = 1
371    
372    env_export=env['env_export']
373    env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME','KMP_MONITOR_STACKSIZE','TMPDIR','TEMP','TMP'])
374    
375    for key in set(env_export):
376        try:
377            env['ENV'][key] = os.environ[key]
378        except KeyError:
379            pass
380    
381  try:  try:
382    from numarray import identity      env.PrependENVPath(LD_LIBRARY_PATH_KEY, os.environ[LD_LIBRARY_PATH_KEY])
383  except ImportError:  except KeyError:
384    print "Cannot import numarray, you need to set your PYTHONPATH"      pass
   sys.exit(1)  
   
 ############ C compiler (required) #############################  
   
 # Create a Configure() environment for checking existence of required libraries and headers  
 conf = Configure(clone_env(env))  
   
 # Test that the compiler is working  
 if not conf.CheckFunc('printf'):  
   print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])  
   sys.exit(1)  
   
 if conf.CheckFunc('gethostname'):  
   conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])  
   
 ############ python libraries (required) #######################  
   
 conf.env.AppendUnique(CPPPATH       = [env['python_path']])  
 conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  
 conf.env.AppendUnique(LIBS      = [env['python_libs']])  
   
 conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs  
385    
386  if not conf.CheckCHeader('Python.h'):  if IS_OSX:
   print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])  
   sys.exit(1)  
 if not conf.CheckFunc('Py_Main'):  
   print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])  
   sys.exit(1)  
   
 ############ boost (required) ##################################  
   
 conf.env.AppendUnique(CPPPATH       = [env['boost_path']])  
 conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  
 conf.env.AppendUnique(LIBS      = [env['boost_libs']])  
   
 conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs  
   
 if not conf.CheckCXXHeader('boost/python.hpp'):  
   print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])  
   sys.exit(1)  
 if not conf.CheckFunc('PyObject_SetAttr'):  
   print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])  
   sys.exit(1)  
   
 # Commit changes to environment  
 env = conf.Finish()  
   
 ############ VTK (optional) ####################################  
   
 if env['usevtk']:  
387    try:    try:
388      import vtk      env.PrependENVPath('DYLD_LIBRARY_PATH', os.environ['DYLD_LIBRARY_PATH'])
389      env['usevtk'] = 1    except KeyError:
390    except ImportError:      pass
     env['usevtk'] = 0  
   
 # Add VTK to environment env if it was found  
 if env['usevtk']:  
   env.Append(CPPDEFINES = ['USE_VTK'])  
   
 ############ NetCDF (optional) #################################  
   
 conf = Configure(clone_env(env))  
   
 if env['usenetcdf']:  
   conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])  
   conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs  
   
 if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  
 if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  
   
 # Add NetCDF to environment env if it was found  
 if env['usenetcdf']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['USE_NETCDF'])  
 else:  
   conf.Finish()  
391    
 ############ PAPI (optional) ###################################  
392    
393  # Start a new configure environment that reflects what we've already found  # these shouldn't be needed
394  conf = Configure(clone_env(env))  #for key in 'C_INCLUDE_PATH','CPLUS_INCLUDE_PATH','LIBRARY_PATH':
395    #    try:
396    #        env['ENV'][key] = os.environ[key]
397    #    except KeyError:
398    #        pass
399    
400  if env['usepapi']:  try:
401    conf.env.AppendUnique(CPPPATH = [env['papi_path']])      env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
402    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])  except KeyError:
403    conf.env.AppendUnique(LIBS    = [env['papi_libs']])      pass
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs  
   
 if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  
 if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  
   
 # Add PAPI to environment env if it was found  
 if env['usepapi']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['BLOCKPAPI'])  
 else:  
   conf.Finish()  
   
 ############ MKL (optional) ####################################  
404    
405  # Start a new configure environment that reflects what we've already found  ######################## Add some custom builders ############################
 conf = Configure(clone_env(env))  
406    
407  if env['usemkl']:  if env['pythoncmd']=='python':
408    conf.env.AppendUnique(CPPPATH = [env['mkl_path']])      py_builder = Builder(action = build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
   conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['mkl_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs  
   
 if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  
 if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0  
   
 # Add MKL to environment env if it was found  
 if env['usemkl']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['MKL'])  
409  else:  else:
410    conf.Finish()      py_builder = Builder(action = env['pythoncmd']+" scripts/py_comp.py $SOURCE $TARGET", suffix = '.pyc', src_suffix = '.py', single_source=True)
411    env.Append(BUILDERS = {'PyCompile' : py_builder});
 ############ UMFPACK (optional) ################################  
412    
413  # Start a new configure environment that reflects what we've already found  runUnitTest_builder = Builder(action = runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
414  conf = Configure(clone_env(env))  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
415    
416  if env['useumfpack']:  runPyUnitTest_builder = Builder(action = runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
417    conf.env.AppendUnique(CPPPATH = [env['ufc_path']])  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
   conf.env.AppendUnique(CPPPATH = [env['umf_path']])  
   conf.env.AppendUnique(LIBPATH = [env['umf_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['umf_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['amd_path']])  
   conf.env.AppendUnique(LIBPATH = [env['amd_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['amd_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['blas_path']])  
   conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['blas_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs  
   
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
 if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  
   
 # Add UMFPACK to environment env if it was found  
 if env['useumfpack']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['UMFPACK'])  
 else:  
   conf.Finish()  
418    
419  ############ Add the compiler flags ############################  epstopdfbuilder = Builder(action = eps2pdf, suffix='.pdf', src_suffix='.eps', single_source=True)
420    env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
421    
422  # Enable debug by choosing either cc_debug or cc_optim  ############################ Dependency checks ###############################
 if env['usedebug']:  
   env.Append(CCFLAGS        = env['cc_debug'])  
   env.Append(CCFLAGS        = env['omp_debug'])  
 else:  
   env.Append(CCFLAGS        = env['cc_optim'])  
   env.Append(CCFLAGS        = env['omp_optim'])  
423    
424  # Always use cc_flags  ######## Compiler
425  env.Append(CCFLAGS      = env['cc_flags'])  env=checkCompiler(env)
 env.Append(LIBS         = [env['omp_libs']])  
   
 ############ MPI (optional) ####################################  
   
 # Create a modified environment for MPI programs (identical to env if usempi=no)  
 env_mpi = clone_env(env)  
   
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env_mpi))  
   
 if env_mpi['usempi']:  
   conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])  
   conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs  
   
 if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  
 if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  
   
 # Add MPI to environment env_mpi if it was found  
 if env_mpi['usempi']:  
   env_mpi = conf.Finish()  
   env_mpi.Append(CPPDEFINES = ['PASO_MPI', 'MPI_NO_CPPBIND', env_mpi['MPICH_IGNORE_CXX_SEEK']])  
 else:  
   conf.Finish()  
426    
427  env['usempi'] = env_mpi['usempi']  ######## Python headers & library (required)
428    env=checkPython(env)
429    
430  ############ ParMETIS (optional) ###############################  ######## boost & boost-python (required)
431    env=checkBoost(env)
432    
433  # Start a new configure environment that reflects what we've already found  ######## numpy (required) and numpy headers (optional)
434  conf = Configure(clone_env(env_mpi))  env=checkNumpy(env)
435    
436  if not env_mpi['usempi']: env_mpi['useparmetis'] = 0  ######## CppUnit (required for tests)
437    env=checkCppUnit(env)
438    
439  if env_mpi['useparmetis']:  ######## optional python modules (sympy, pyproj)
440    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])  env=checkOptionalModules(env)
   conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs  
441    
442  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  ######## optional dependencies (netCDF, PAPI, MKL, UMFPACK, Lapack, Silo, ...)
443  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  env=checkOptionalLibraries(env)
444    
445  # Add ParMETIS to environment env_mpi if it was found  ######## PDFLaTeX (for documentation)
446  if env_mpi['useparmetis']:  env=checkPDFLatex(env)
   env_mpi = conf.Finish()  
   env_mpi.Append(CPPDEFINES = ['USE_PARMETIS'])  
 else:  
   conf.Finish()  
447    
448  env['useparmetis'] = env_mpi['useparmetis']  # keep some of our install paths first in the list for the unit tests
449    env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
450    env.PrependENVPath('PYTHONPATH', prefix)
451    env['ENV']['ESCRIPT_ROOT'] = prefix
452    
453  ############ Now we switch on Warnings as errors ###############  if not env['verbose']:
454        env['CXXCOMSTR'] = "Compiling $TARGET"
455        env['SHCXXCOMSTR'] = "Compiling $TARGET"
456        env['ARCOMSTR'] = "Linking $TARGET"
457        env['LINKCOMSTR'] = "Linking $TARGET"
458        env['SHLINKCOMSTR'] = "Linking $TARGET"
459        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
460        env['BIBTEXCOMSTR'] = "Generating bibliography $TARGET"
461        env['MAKEINDEXCOMSTR'] = "Generating index $TARGET"
462        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
463        #Progress(['Checking -\r', 'Checking \\\r', 'Checking |\r', 'Checking /\r'], interval=17)
464    
465    ####################### Configure the subdirectories #########################
466    
467    # remove obsolete files
468    if not env['usempi']:
469        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPI')))
470        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPIredirect')))
471    
472    from grouptest import *
473    TestGroups=[]
474    
475    # keep an environment without warnings-as-errors
476    dodgy_env=env.Clone()
477    
478    # now add warnings-as-errors flags. This needs to be done after configuration
479    # because the scons test files have warnings in them
480    if ((fatalwarning != '') and (env['werror'])):
481        env.Append(CCFLAGS = fatalwarning)
482    
483  #this needs to be done after configuration because the scons test files have warnings in them  Export(
484      ['env',
485       'dodgy_env',
486       'IS_WINDOWS',
487       'TestGroups'
488      ]
489    )
490    
491  if ((fatalwarning != "") and (env['usewarnings'])):  env.SConscript(dirs = ['tools/escriptconvert'], variant_dir='$BUILD_DIR/$PLATFORM/tools/escriptconvert', duplicate=0)
492    env.Append(CCFLAGS        = fatalwarning)  env.SConscript(dirs = ['paso/src'], variant_dir='$BUILD_DIR/$PLATFORM/paso', duplicate=0)
493    env_mpi.Append(CCFLAGS        = fatalwarning)  env.SConscript(dirs = ['weipa/src'], variant_dir='$BUILD_DIR/$PLATFORM/weipa', duplicate=0)
494    env.SConscript(dirs = ['escript/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/escript', duplicate=0)
495  ############ Summarize our environment #########################  
496    #This will pull in the escriptcore/py_src and escriptcore/test
497  print ""  env.SConscript(dirs = ['escriptcore/src'], variant_dir='$BUILD_DIR/$PLATFORM/escriptcore', duplicate=0)
498  print "Summary of configuration (see ./config.log for information)"  #env.SConscript(dirs = ['escript/test'], variant_dir='$BUILD_DIR/$PLATFORM/escript/test', duplicate=0)
499  print " Using python libraries"  env.SConscript(dirs = ['esysUtils/src'], variant_dir='$BUILD_DIR/$PLATFORM/esysUtils', duplicate=0)
500  print " Using numarray"  env.SConscript(dirs = ['pasowrap/src'], variant_dir='$BUILD_DIR/$PLATFORM/pasowrap', duplicate=0)
501  print " Using boost"  env.SConscript(dirs = ['dudley/src'], variant_dir='$BUILD_DIR/$PLATFORM/dudley', duplicate=0)
502  if env['usenetcdf']: print "    Using NetCDF"  env.SConscript(dirs = ['finley/src'], variant_dir='$BUILD_DIR/$PLATFORM/finley', duplicate=0)
503  else: print "   Not using NetCDF"  env.SConscript(dirs = ['ripley/src'], variant_dir='$BUILD_DIR/$PLATFORM/ripley', duplicate=0)
504  if env['usevtk']: print "   Using VTK"  env.SConscript(dirs = ['downunder/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/downunder', duplicate=0)
505  else: print "   Not using VTK"  env.SConscript(dirs = ['modellib/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/modellib', duplicate=0)
506  if env['usemkl']: print "   Using MKL"  env.SConscript(dirs = ['pycad/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pycad', duplicate=0)
507  else: print "   Not using MKL"  env.SConscript(dirs = ['pythonMPI/src'], variant_dir='$BUILD_DIR/$PLATFORM/pythonMPI', duplicate=0)
508  if env['useumfpack']: print "   Using UMFPACK"  env.SConscript(dirs = ['doc'], variant_dir='$BUILD_DIR/$PLATFORM/doc', duplicate=0)
509  else: print "   Not using UMFPACK"  env.SConscript(dirs = ['paso/profiling'], variant_dir='$BUILD_DIR/$PLATFORM/paso/profiling', duplicate=0)
 if env['useopenmp']: print "    Using OpenMP"  
 else: print "   Not using OpenMP"  
 if env['usempi']: print "   Using MPI"  
 else: print "   Not using MPI"  
 if env['useparmetis']: print "  Using ParMETIS"  
 else: print "   Not using ParMETIS (requires MPI)"  
 if env['usepapi']: print "  Using PAPI"  
 else: print "   Not using PAPI"  
 if env['usedebug']: print " Compiling for debug"  
 else: print "   Not compiling for debug"  
 print " Installing in", prefix  
 if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"  
 else: print "   Not treating warnings as errors"  
 print ""  
   
 ############ Delete option-dependent files #####################  
   
 Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))  
 Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))  
 Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))  
 if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))  
510    
 ############ Add some custom builders ##########################  
511    
512  py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  ######################## Populate the buildvars file #########################
 env.Append(BUILDERS = {'PyCompile' : py_builder});  
513    
514  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  write_buildvars(env)
 env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  
515    
516  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  ################### Targets to build and install libraries ###################
 env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  
517    
518  ############ Build the subdirectories ##########################  target_init = env.Command(os.path.join(env['pyinstall'],'__init__.py'), None, Touch('$TARGET'))
519    env.Alias('target_init', [target_init])
520    # delete buildvars upon cleanup
521    env.Clean('target_init', os.path.join(env['libinstall'], 'buildvars'))
522    
523  Export(  # The headers have to be installed prior to build in order to satisfy
524    ["env",  # #include <paso/Common.h>
525     "env_mpi",  env.Alias('build_esysUtils', ['install_esysUtils_headers', 'build_esysUtils_lib'])
526     "clone_env",  env.Alias('install_esysUtils', ['build_esysUtils', 'install_esysUtils_lib'])
    "IS_WINDOWS_PLATFORM"  
    ]  
   )  
   
 env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  
 env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  
 env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  
 env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  
 env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  
 env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)  
 env.SConscript(dirs = ['doc'], build_dir='build/$PLATFORM/doc', duplicate=0)  
 env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  
 env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  
 env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  
 env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)  
   
 ############ Remember what optimizations we used ###############  
   
 remember_list = []  
   
 if env['usedebug']:  
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))  
   
 if env['usempi']:  
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))  
527    
528  if env['omp_optim'] != '':  env.Alias('build_paso', ['install_paso_headers', 'build_paso_lib'])
529    remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))  env.Alias('install_paso', ['build_paso', 'install_paso_lib'])
530    
531  env.Alias('remember_options', remember_list)  env.Alias('build_escript', ['install_escript_headers', 'build_escript_lib', 'build_escriptcpp_lib'])
532    env.Alias('install_escript', ['build_escript', 'install_escript_lib', 'install_escriptcpp_lib', 'install_escriptcore_py', 'install_escript_py'])
533    
534  ############ Targets to build and install libraries ############  env.Alias('build_pasowrap', ['install_pasowrap_headers', 'build_pasowrap_lib', 'build_pasowrapcpp_lib'])
535    env.Alias('install_pasowrap', ['build_pasowrap', 'install_pasowrap_lib', 'install_pasowrapcpp_lib', 'install_pasowrap_py'])
536    
537  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  env.Alias('build_dudley', ['install_dudley_headers', 'build_dudley_lib', 'build_dudleycpp_lib'])
538  env.Alias('target_init', [target_init])  env.Alias('install_dudley', ['build_dudley', 'install_dudley_lib', 'install_dudleycpp_lib', 'install_dudley_py'])
539    
540  # The headers have to be installed prior to build in order to satisfy #include <paso/Common.h>  env.Alias('build_finley', ['install_finley_headers', 'build_finley_lib', 'build_finleycpp_lib'])
541  env.Alias('build_esysUtils', ['target_install_esysUtils_headers', 'target_esysUtils_a'])  env.Alias('install_finley', ['build_finley', 'install_finley_lib', 'install_finleycpp_lib', 'install_finley_py'])
 env.Alias('install_esysUtils', ['build_esysUtils', 'target_install_esysUtils_a'])  
542    
543  env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])  env.Alias('build_ripley', ['install_ripley_headers', 'build_ripley_lib', 'build_ripleycpp_lib'])
544  env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])  env.Alias('install_ripley', ['build_ripley', 'install_ripley_lib', 'install_ripleycpp_lib', 'install_ripley_py'])
545    
546  env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])  env.Alias('build_weipa', ['install_weipa_headers', 'build_weipa_lib', 'build_weipacpp_lib'])
547  env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])  env.Alias('install_weipa', ['build_weipa', 'install_weipa_lib', 'install_weipacpp_lib', 'install_weipa_py'])
548    
549  env.Alias('build_finley', ['target_install_finley_headers', 'target_finley_so', 'target_finleycpp_so'])  env.Alias('build_escriptreader', ['install_weipa_headers', 'build_escriptreader_lib'])
550  env.Alias('install_finley', ['build_finley', 'target_install_finley_so', 'target_install_finleycpp_so', 'target_install_finley_py'])  env.Alias('install_escriptreader', ['build_escriptreader', 'install_escriptreader_lib'])
551    
552  # Now gather all the above into a couple easy targets: build_all and install_all  # Now gather all the above into some easy targets: build_all and install_all
553  build_all_list = []  build_all_list = []
554  build_all_list += ['build_esysUtils']  build_all_list += ['build_esysUtils']
555  build_all_list += ['build_paso']  build_all_list += ['build_paso']
556  build_all_list += ['build_escript']  build_all_list += ['build_escript']
557    build_all_list += ['build_pasowrap']
558    build_all_list += ['build_dudley']
559  build_all_list += ['build_finley']  build_all_list += ['build_finley']
560  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  build_all_list += ['build_ripley']
561  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_finley_wrapper']  build_all_list += ['build_weipa']
562    if not IS_WINDOWS: build_all_list += ['build_escriptreader']
563    if env['usempi']:   build_all_list += ['build_pythonMPI']
564    build_all_list += ['build_escriptconvert']
565  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
566    
567  install_all_list = []  install_all_list = []
# Line 637  install_all_list += ['target_init'] Line 569  install_all_list += ['target_init']
569  install_all_list += ['install_esysUtils']  install_all_list += ['install_esysUtils']
570  install_all_list += ['install_paso']  install_all_list += ['install_paso']
571  install_all_list += ['install_escript']  install_all_list += ['install_escript']
572    install_all_list += ['install_pasowrap']
573    install_all_list += ['install_dudley']
574  install_all_list += ['install_finley']  install_all_list += ['install_finley']
575  install_all_list += ['target_install_pyvisi_py']  install_all_list += ['install_ripley']
576  install_all_list += ['target_install_modellib_py']  install_all_list += ['install_weipa']
577  install_all_list += ['target_install_pycad_py']  if not IS_WINDOWS: install_all_list += ['install_escriptreader']
578  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  install_all_list += ['install_downunder_py']
579  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_finley_wrapper']  install_all_list += ['install_modellib_py']
580  install_all_list += ['remember_options']  install_all_list += ['install_pycad_py']
581    if env['usempi']:   install_all_list += ['install_pythonMPI']
582    install_all_list += ['install_escriptconvert']
583  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
584    
585  # Default target is install  # Default target is install
586  env.Default('install_all')  env.Default('install_all')
587    
588  ############ Targets to build and run the test suite ###########  ################## Targets to build and run the test suite ###################
   
 env.Alias('build_cppunittest', ['target_install_cppunittest_headers', 'target_cppunittest_a'])  
 env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])  
 env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])  
 env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])  
589    
590  ############ Targets to build the documentation ################  if not env['cppunit']:
591        test_msg = env.Command('.dummy.', None, '@echo "Cannot run C++ unit tests, CppUnit not found!";exit 1')
592        env.Alias('run_tests', test_msg)
593        env.Alias('build_tests', '')
594    env.Alias('run_tests', ['install_all'])
595    env.Alias('all_tests', ['install_all', 'run_tests', 'py_tests'])
596    env.Alias('build_full',['install_all','build_tests','build_py_tests'])
597    env.Alias('build_PasoTests','$BUILD_DIR/$PLATFORM/paso/profiling/PasoTests')
598    
599    ##################### Targets to build the documentation #####################
600    
601    env.Alias('pdfdocs',['user_pdf', 'install_pdf', 'cookbook_pdf', 'inversion_pdf'])
602    env.Alias('basedocs', ['pdfdocs','examples_tarfile', 'examples_zipfile', 'api_doxygen'])
603    env.Alias('docs', ['basedocs', 'sphinxdoc'])
604    env.Alias('release_prep', ['docs', 'install_all'])
605    env.Alias('release_prep_old', ['basedocs', 'api_epydoc', 'install_all'])
606    
607    # The test scripts are always generated, this target allows us to
608    # generate the testscripts without doing a full build
609    env.Alias('testscripts',[])
610    
611    if not IS_WINDOWS:
612        generateTestScripts(env, TestGroups)
613    
614    
615    
616    ######################## Summarize our environment ###########################
617    def print_summary():
618        print("")
619        print("*** Config Summary (see config.log and <prefix>/lib/buildvars for details) ***")
620        print("Escript/Finley revision %s"%global_revision)
621        print("  Install prefix:  %s"%env['prefix'])
622        print("          Python:  %s"%sysconfig.PREFIX)
623        print("           boost:  %s"%env['boost_prefix'])
624        if env['numpy_h']:
625            print("           numpy:  YES (with headers)")
626        else:
627            print("           numpy:  YES (without headers)")
628        if env['usempi']:
629            print("             MPI:  YES (flavour: %s)"%env['mpi'])
630        else:
631            print("             MPI:  DISABLED")
632        if env['uselapack']:
633            print("          LAPACK:  YES (flavour: %s)"%env['lapack'])
634        else:
635            print("          LAPACK:  DISABLED")
636        d_list=[]
637        e_list=[]
638        for i in 'debug','openmp','boomeramg','gdal','mkl','netcdf','papi','parmetis','pyproj','scipy','silo','sympy','umfpack','visit','vsl_random':
639            if env[i]: e_list.append(i)
640            else: d_list.append(i)
641        for i in e_list:
642            print("%16s:  YES"%i)
643        for i in d_list:
644            print("%16s:  DISABLED"%i)
645        if env['cppunit']:
646            print("         CppUnit:  FOUND")
647        else:
648            print("         CppUnit:  NOT FOUND")
649        if env['gmsh']=='m':
650            print("            gmsh:  FOUND, MPI-ENABLED")
651        elif env['gmsh']=='s':
652            print("            gmsh:  FOUND")
653        else:
654            print("            gmsh:  NOT FOUND")
655    
656        if ((fatalwarning != '') and (env['werror'])):
657            print("  Treating warnings as errors")
658        else:
659            print("  NOT treating warnings as errors")
660        print("")
661        for w in env['warnings']:
662            print("WARNING: %s"%w)
663    
664  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])  atexit.register(print_summary)
665    

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