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revision 2300 by gross, Wed Mar 11 08:17:57 2009 UTC revision 4657 by jfenwick, Thu Feb 6 06:12:20 2014 UTC
# Line 1  Line 1 
1    ##############################################################################
 ########################################################  
2  #  #
3  # Copyright (c) 2003-2008 by University of Queensland  # Copyright (c) 2003-2014 by University of Queensland
4  # Earth Systems Science Computational Center (ESSCC)  # http://www.uq.edu.au
 # http://www.uq.edu.au/esscc  
5  #  #
6  # Primary Business: Queensland, Australia  # Primary Business: Queensland, Australia
7  # Licensed under the Open Software License version 3.0  # Licensed under the Open Software License version 3.0
8  # http://www.opensource.org/licenses/osl-3.0.php  # http://www.opensource.org/licenses/osl-3.0.php
9  #  #
10  ########################################################  # Development until 2012 by Earth Systems Science Computational Center (ESSCC)
11    # Development 2012-2013 by School of Earth Sciences
12    # Development from 2014 by Centre for Geoscience Computing (GeoComp)
13  EnsureSConsVersion(0,96,91)  #
14  EnsurePythonVersion(2,3)  ##############################################################################
   
 import sys, os, re, socket, platform, stat  
   
 # Add our extensions  
 if os.path.isdir('scons'): sys.path.append('scons')  
 import scons_extensions  
15    
16  # Use /usr/lib64 if available, else /usr/lib  EnsureSConsVersion(0,98,1)
17  usr_lib = '/usr/lib'  EnsurePythonVersion(2,5)
 if os.path.isfile('/usr/lib64/libc.so'): usr_lib = '/usr/lib64'  
18    
19  # The string python2.4 or python2.5  import atexit, sys, os, platform, re
20  python_version = 'python%s.%s' % (sys.version_info[0], sys.version_info[1])  from distutils import sysconfig
21    from dependencies import *
22    from site_init import *
23    
24    # Version number to check for in options file. Increment when new features are
25    # added or existing options changed.
26    REQUIRED_OPTS_VERSION=201
27    
28  # MS Windows support, many thanks to PH  # MS Windows support, many thanks to PH
29  IS_WINDOWS_PLATFORM = (os.name== "nt")  IS_WINDOWS = (os.name == 'nt')
   
 prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)  
   
 # Read configuration options from file scons/<hostname>_options.py  
 hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  
 tmp = os.path.join("scons",hostname+"_options.py")  
 options_file = ARGUMENTS.get('options_file', tmp)  
 if not os.path.isfile(options_file):  
   options_file = False  
   print "Options file not found (expected '%s')" % tmp  
 else:  
   print "Options file is", options_file  
30    
31  # Load options file and command-line arguments  IS_OSX = (os.uname()[0] == 'Darwin')
 opts = Options(options_file, ARGUMENTS)  
32    
33  ############ Load build options ################################  ########################## Determine options file ############################
34    # 1. command line
35    # 2. scons/<hostname>_options.py
36    # 3. name as part of a cluster
37    options_file=ARGUMENTS.get('options_file', None)
38    if not options_file:
39        ext_dir = os.path.join(os.getcwd(), 'scons')
40        hostname = platform.node().split('.')[0]
41        for name in hostname, effectiveName(hostname):
42            mangledhostname = re.sub('[^0-9a-zA-Z]', '_', hostname)
43            options_file = os.path.join(ext_dir, mangledhostname+'_options.py')
44            if os.path.isfile(options_file): break
45    
46  opts.AddOptions(  if not os.path.isfile(options_file):
47  # Where to install esys stuff      print("\nWARNING:\nOptions file %s" % options_file)
48    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),      print("not found! Default options will be used which is most likely suboptimal.")
49    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),      print("We recommend that you copy one of the TEMPLATE files in the scons/")
50    ('bininstall', 'where the esys binaries will be installed',            os.path.join(prefix,'bin')),      print("subdirectory and customize it to your needs.\n")
51    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),      options_file = None
52    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),  
53  # Compilation options  ############################### Build options ################################
54    BoolOption('dodebug', 'For backwards compatibility', 'no'),  
55    BoolOption('usedebug', 'Do you want a debug build?', 'no'),  default_prefix='/usr'
56    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),  mpi_flavours=('no', 'none', 'MPT', 'MPICH', 'MPICH2', 'OPENMPI', 'INTELMPI')
57    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),  lapack_flavours=('none', 'clapack', 'mkl')
58    ('win_cc_name', 'windows C compiler name if needed', 'msvc'),  
59    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below  vars = Variables(options_file, ARGUMENTS)
60    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),  vars.AddVariables(
61    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),    PathVariable('options_file', 'Path to options file', options_file, PathVariable.PathIsFile),
62    ('cc_debug', 'C compiler debug flags to use', '-DEFAULT_3'),    PathVariable('prefix', 'Installation prefix', Dir('#.').abspath, PathVariable.PathIsDirCreate),
63    ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),    PathVariable('build_dir', 'Top-level build directory', Dir('#/build').abspath, PathVariable.PathIsDirCreate),
64    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),    BoolVariable('verbose', 'Output full compile/link lines', False),
65    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),  # Compiler/Linker options
66    ('cc_extra', 'Extra C/C++ flags', ''),    ('cxx', 'Path to C++ compiler', 'default'),
67      ('cc_flags', 'Base C++ compiler flags', 'default'),
68      ('cc_optim', 'Additional C++ flags for a non-debug build', 'default'),
69      ('cc_debug', 'Additional C++ flags for a debug build', 'default'),
70      ('cxx_extra', 'Extra C++ compiler flags', ''),
71    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
72    ('sys_libs', 'System libraries to link with', []),    BoolVariable('werror','Treat compiler warnings as errors', True),
73    ('ar_flags', 'Static library archiver flags to use', ''),    BoolVariable('debug', 'Compile with debug flags', False),
74    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'no'),    BoolVariable('openmp', 'Compile parallel version using OpenMP', False),
75    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),    ('omp_flags', 'OpenMP compiler flags', 'default'),
76    BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),    ('omp_ldflags', 'OpenMP linker flags', 'default'),
77    ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),  # Mandatory libraries
78  # Python    ('boost_prefix', 'Prefix/Paths of boost installation', default_prefix),
79    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),    ('boost_libs', 'Boost libraries to link with', ['boost_python-mt']),
80    ('python_lib_path', 'Path to Python libs', usr_lib),  # Mandatory for tests
81    ('python_libs', 'Python libraries to link with', [python_version]),    ('cppunit_prefix', 'Prefix/Paths of CppUnit installation', default_prefix),
82    ('python_cmd', 'Python command', 'python'),    ('cppunit_libs', 'CppUnit libraries to link with', ['cppunit']),
83  # Boost  # Optional libraries and options
84    ('boost_path', 'Path to Boost includes', '/usr/include'),    EnumVariable('mpi', 'Compile parallel version using MPI flavour', 'none', allowed_values=mpi_flavours),
85    ('boost_lib_path', 'Path to Boost libs', usr_lib),    ('mpi_prefix', 'Prefix/Paths of MPI installation', default_prefix),
86    ('boost_libs', 'Boost libraries to link with', ['boost_python']),    ('mpi_libs', 'MPI shared libraries to link with', ['mpi']),
87  # NetCDF    BoolVariable('netcdf', 'Enable netCDF file support', False),
88    BoolOption('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),    ('netcdf_prefix', 'Prefix/Paths of netCDF installation', default_prefix),
89    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),    ('netcdf_libs', 'netCDF libraries to link with', ['netcdf_c++', 'netcdf']),
90    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),    BoolVariable('parmetis', 'Enable ParMETIS (requires MPI)', False),
91    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),    ('parmetis_prefix', 'Prefix/Paths of ParMETIS installation', default_prefix),
92  # MPI    ('parmetis_libs', 'ParMETIS libraries to link with', ['parmetis', 'metis']),
93    BoolOption('useMPI', 'For backwards compatibility', 'no'),    BoolVariable('papi', 'Enable PAPI', False),
94    BoolOption('usempi', 'Compile parallel version using MPI', 'no'),    ('papi_prefix', 'Prefix/Paths to PAPI installation', default_prefix),
   ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),  
   ('mpi_path', 'Path to MPI includes', '/usr/include'),  
   ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),  
   ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),  
   ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),  
 # ParMETIS  
   BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),  
   ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),  
   ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),  
   ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),  
 # PAPI  
   BoolOption('usepapi', 'switch on/off the usage of PAPI', 'no'),  
   ('papi_path', 'Path to PAPI includes', '/usr/include'),  
   ('papi_lib_path', 'Path to PAPI libs', usr_lib),  
95    ('papi_libs', 'PAPI libraries to link with', ['papi']),    ('papi_libs', 'PAPI libraries to link with', ['papi']),
96    BoolOption('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),    BoolVariable('papi_instrument_solver', 'Use PAPI to instrument each iteration of the solver', False),
97  # MKL    BoolVariable('mkl', 'Enable the Math Kernel Library', False),
98    BoolOption('usemkl', 'switch on/off the usage of MKL', 'no'),    ('mkl_prefix', 'Prefix/Paths to MKL installation', default_prefix),
99    ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver','mkl_em64t','guide','pthread']),
100    ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),    BoolVariable('umfpack', 'Enable UMFPACK', False),
101    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),    ('umfpack_prefix', 'Prefix/Paths to UMFPACK installation', default_prefix),
102  # UMFPACK    ('umfpack_libs', 'UMFPACK libraries to link with', ['umfpack']),
103    BoolOption('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),    BoolVariable('boomeramg', 'Enable BoomerAMG', False),
104    ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),    ('boomeramg_prefix', 'Prefix/Paths to BoomerAMG installation', default_prefix),
105    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('boomeramg_libs', 'BoomerAMG libraries to link with', ['boomeramg']),
106    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    EnumVariable('lapack', 'Set LAPACK flavour', 'none', allowed_values=lapack_flavours),
107    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('lapack_prefix', 'Prefix/Paths to LAPACK installation', default_prefix),
108  # Silo    ('lapack_libs', 'LAPACK libraries to link with', []),
109    BoolOption('usesilo', 'switch on/off the usage of Silo', 'yes'),    BoolVariable('silo', 'Enable the Silo file format in weipa', False),
110    ('silo_path', 'Path to Silo includes', '/usr/include'),    ('silo_prefix', 'Prefix/Paths to Silo installation', default_prefix),
   ('silo_lib_path', 'Path to Silo libs', usr_lib),  
111    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
112  # AMD (used by UMFPACK)    BoolVariable('visit', 'Enable the VisIt simulation interface', False),
113    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    ('visit_prefix', 'Prefix/Paths to VisIt installation', default_prefix),
114    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('visit_libs', 'VisIt libraries to link with', ['simV2']),
115    ('amd_libs', 'AMD libraries to link with', ['amd']),    BoolVariable('vsl_random', 'Use VSL from intel for random data', False),
116  # BLAS (used by UMFPACK)  # Advanced settings
117    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),    #dudley_assemble_flags = -funroll-loops      to actually do something
118    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    ('dudley_assemble_flags', 'compiler flags for some dudley optimisations', ''),
119    ('blas_libs', 'BLAS libraries to link with', ['blas']),    # To enable passing function pointers through python
120  # An option for specifying the compiler tools set (see windows branch).    BoolVariable('iknowwhatimdoing', 'Allow non-standard C', False),
121    ('tools_names', 'allow control over the tools in the env setup', ['intelc']),    # An option for specifying the compiler tools (see windows branch)
122  # finer control over library building, intel aggressive global optimisation    ('tools_names', 'Compiler tools to use', ['default']),
123  # works with dynamic libraries on windows.    ('env_export', 'Environment variables to be passed to tools',[]),
124    ('share_esysUtils', 'control static or dynamic esysUtils lib', False),    EnumVariable('forcelazy', 'For testing use only - set the default value for autolazy', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
125    ('share_paso', 'control static or dynamic paso lib', False)    EnumVariable('forcecollres', 'For testing use only - set the default value for force resolving collective ops', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
126      # finer control over library building, intel aggressive global optimisation
127      # works with dynamic libraries on windows.
128      ('build_shared', 'Build dynamic libraries only', False),
129      ('sys_libs', 'Extra libraries to link with', []),
130      ('escript_opts_version', 'Version of options file (do not specify on command line)'),
131      ('SVN_VERSION', 'Do not use from options file', -2),
132      ('pythoncmd', 'which python to compile with','python'),
133      ('usepython3', 'Is this a python3 build? (experimental)', False),
134      ('pythonlibname', 'Name of the python library to link. (This is found automatically for python2.X.)', ''),
135      ('pythonlibpath', 'Path to the python library. (You should not need to set this unless your python has moved)',''),
136      ('pythonincpath','Path to python include files. (You should not need to set this unless your python has moved',''),
137      BoolVariable('BADPYTHONMACROS','Extra \#include to get around a python bug.', True),
138  )  )
139    
140  ############ Specify which compilers to use ####################  ##################### Create environment and help text #######################
141    
142  # intelc uses regular expressions improperly and emits a warning about  # Intel's compiler uses regular expressions improperly and emits a warning
143  # failing to find the compilers.  This warning can be safely ignored.  # about failing to find the compilers. This warning can be safely ignored.
144    
145  if IS_WINDOWS_PLATFORM:  # PATH is needed so the compiler, linker and tools are found if they are not
146        env = Environment(options = opts)  # in default locations.
147        env = Environment(tools = ['default'] + env['tools_names'],  env = Environment(tools = ['default'], options = vars,
148                          options = opts)                    ENV = {'PATH': os.environ['PATH']})
149    
150    # set the vars for clang
151    def mkclang(env):
152        env['CXX']='clang++'
153    
154    if env['tools_names'] != 'default':
155        zz=env['tools_names']
156        if 'clang' in zz:
157            zz.remove('clang')
158            zz.insert(0, mkclang)
159        env = Environment(tools = ['default'] + env['tools_names'], options = vars,
160                          ENV = {'PATH' : os.environ['PATH']})
161    
162    if options_file:
163        opts_valid=False
164        if 'escript_opts_version' in env.Dictionary() and \
165            int(env['escript_opts_version']) >= REQUIRED_OPTS_VERSION:
166                opts_valid=True
167        if opts_valid:
168            print("Using options in %s." % options_file)
169        else:
170            print("\nOptions file %s" % options_file)
171            print("is outdated! Please update the file by examining one of the TEMPLATE")
172            print("files in the scons/ subdirectory and setting escript_opts_version to %d.\n"%REQUIRED_OPTS_VERSION)
173            Exit(1)
174    
175    # Generate help text (scons -h)
176    Help(vars.GenerateHelpText(env))
177    
178    # Check for superfluous options
179    if len(vars.UnknownVariables())>0:
180        for k in vars.UnknownVariables():
181            print("Unknown option '%s'" % k)
182        Exit(1)
183    
184    # create dictionary which will be populated with info for buildvars file
185    env['buildvars']={}
186    # create list which will be populated with warnings if there are any
187    env['warnings']=[]
188    
189    #################### Make sure install directories exist #####################
190    
191    env['BUILD_DIR']=Dir(env['build_dir']).abspath
192    prefix=Dir(env['prefix']).abspath
193    env['buildvars']['prefix']=prefix
194    env['incinstall'] = os.path.join(prefix, 'include')
195    env['bininstall'] = os.path.join(prefix, 'bin')
196    env['libinstall'] = os.path.join(prefix, 'lib')
197    env['pyinstall']  = os.path.join(prefix, 'esys')
198    if not os.path.isdir(env['bininstall']):
199        os.makedirs(env['bininstall'])
200    if not os.path.isdir(env['libinstall']):
201        os.makedirs(env['libinstall'])
202    if not os.path.isdir(env['pyinstall']):
203        os.makedirs(env['pyinstall'])
204    
205    env.Append(CPPPATH = [env['incinstall']])
206    env.Append(LIBPATH = [env['libinstall']])
207    
208    ################# Fill in compiler options if not set above ##################
209    
210    if env['cxx'] != 'default': env['CXX']=env['cxx']
211    
212    # version >=9 of intel C++ compiler requires use of icpc to link in C++
213    # runtimes (icc does not)
214    if not IS_WINDOWS and os.uname()[4]=='ia64' and env['CXX']=='icpc':
215        env['LINK'] = env['CXX']
216    
217    # default compiler/linker options
218    cc_flags = ''
219    cc_optim = ''
220    cc_debug = ''
221    omp_flags = ''
222    omp_ldflags = ''
223    fatalwarning = '' # switch to turn warnings into errors
224    sysheaderopt = '' # how to indicate that a header is a system header
225    
226    # env['CC'] might be a full path
227    cc_name=os.path.basename(env['CXX'])
228    
229    if cc_name == 'icpc':
230        # Intel compiler
231        # #1875: offsetof applied to non-POD types is nonstandard (in boost)
232        # removed -std=c99 because icpc doesn't like it and we aren't using c anymore
233        cc_flags    = "-fPIC -w2 -wd1875 -Wno-unknown-pragmas -DBLOCKTIMER -DCORE_ID1"
234        cc_optim    = "-O3 -ftz -fno-alias -ipo -xHost"
235        cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
236        omp_flags   = "-openmp"
237        omp_ldflags = "-openmp -openmp_report=1"
238        fatalwarning = "-Werror"
239    elif cc_name[:3] == 'g++':
240        # GNU C on any system
241        # note that -ffast-math is not used because it breaks isnan(),
242        # see mantis #691
243        cc_flags     = "-pedantic -Wall -fPIC -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"
244        cc_optim     = "-O3"
245        cc_debug     = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
246        omp_flags    = "-fopenmp"
247        omp_ldflags  = "-fopenmp"
248        fatalwarning = "-Werror"
249        sysheaderopt = "-isystem"
250    elif cc_name == 'cl':
251        # Microsoft Visual C on Windows
252        cc_flags     = "/EHsc /MD /GR /wd4068 /D_USE_MATH_DEFINES /DDLL_NETCDF"
253        cc_optim     = "/O2 /Op /W3"
254        cc_debug     = "/Od /RTCcsu /ZI /DBOUNDS_CHECK"
255        fatalwarning = "/WX"
256    elif cc_name == 'icl':
257        # Intel C on Windows
258        cc_flags     = '/EHsc /GR /MD'
259        cc_optim     = '/fast /Oi /W3 /Qssp /Qinline-factor- /Qinline-min-size=0 /Qunroll'
260        cc_debug     = '/Od /RTCcsu /Zi /Y- /debug:all /Qtrapuv'
261        omp_flags    = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
262        omp_ldflags  = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
263    
264    env['sysheaderopt']=sysheaderopt
265    
266    # set defaults if not otherwise specified
267    if env['cc_flags']    == 'default': env['cc_flags'] = cc_flags
268    if env['cc_optim']    == 'default': env['cc_optim'] = cc_optim
269    if env['cc_debug']    == 'default': env['cc_debug'] = cc_debug
270    if env['omp_flags']   == 'default': env['omp_flags'] = omp_flags
271    if env['omp_ldflags'] == 'default': env['omp_ldflags'] = omp_ldflags
272    if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
273    if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])
274    
275    if env['BADPYTHONMACROS']: env.Append(CXXFLAGS = ' -DBADPYTHONMACROS')
276    
277    if env['usepython3']:
278        env.Append(CPPDEFINES=['ESPYTHON3'])
279    
280    # set up the autolazy values
281    if env['forcelazy'] == 'on':
282        env.Append(CPPDEFINES=['FAUTOLAZYON'])
283    elif env['forcelazy'] == 'off':
284        env.Append(CPPDEFINES=['FAUTOLAZYOFF'])
285    
286    # set up the collective resolve values
287    if env['forcecollres'] == 'on':
288        env.Append(CPPDEFINES=['FRESCOLLECTON'])
289    elif env['forcecollres'] == 'off':
290        env.Append(CPPDEFINES=['FRESCOLLECTOFF'])
291    
292    # allow non-standard C if requested
293    if env['iknowwhatimdoing']:
294        env.Append(CPPDEFINES=['IKNOWWHATIMDOING'])
295    
296    # Disable OpenMP if no flags provided
297    if env['openmp'] and env['omp_flags'] == '':
298       env['warnings'].append("OpenMP requested but no flags provided - disabling OpenMP!")
299       env['openmp'] = False
300    
301    if env['openmp']:
302        env.Append(CCFLAGS = env['omp_flags'])
303        if env['omp_ldflags'] != '': env.Append(LINKFLAGS = env['omp_ldflags'])
304    else:
305        env['omp_flags']=''
306        env['omp_ldflags']=''
307    
308    env['buildvars']['openmp']=int(env['openmp'])
309    
310    # add debug/non-debug compiler flags
311    env['buildvars']['debug']=int(env['debug'])
312    if env['debug']:
313        env.Append(CCFLAGS = env['cc_debug'])
314    else:
315        env.Append(CCFLAGS = env['cc_optim'])
316    
317    # always add cc_flags
318    env.Append(CCFLAGS = env['cc_flags'])
319    
320    # add system libraries
321    env.AppendUnique(LIBS = env['sys_libs'])
322    
323    # determine svn revision
324    global_revision=ARGUMENTS.get('SVN_VERSION', None)
325    if global_revision:
326        global_revision = re.sub(':.*', '', global_revision)
327        global_revision = re.sub('[^0-9]', '', global_revision)
328        if global_revision == '': global_revision='-2'
329  else:  else:
330     if socket.gethostname().split('.')[0] == 'service0':    # Get the global Subversion revision number for the getVersion() method
331        env = Environment(tools = ['default', 'intelc'], options = opts)    try:
332     elif os.uname()[4]=='ia64':      global_revision = os.popen('svnversion -n .').read()
333        env = Environment(tools = ['default', 'intelc'], options = opts)      global_revision = re.sub(':.*', '', global_revision)
334        if env['CXX'] == 'icpc':      global_revision = re.sub('[^0-9]', '', global_revision)
335           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)      if global_revision == '': global_revision='-2'
336     else:    except:
337        env = Environment(tools = ['default'], options = opts)      global_revision = '-1'
338  Help(opts.GenerateHelpText(env))  env['svn_revision']=global_revision
339    env['buildvars']['svn_revision']=global_revision
340  ############ Fill in compiler options if not set above #########  env.Append(CPPDEFINES=['SVN_VERSION='+global_revision])
341    
342  # Backwards compatibility: allow dodebug=yes and useMPI=yes  if IS_WINDOWS:
343  if env['dodebug']: env['usedebug'] = 1      if not env['build_shared']:
344  if env['useMPI']: env['usempi'] = 1          env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
345            env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
346  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  
347  # For both C and C++ you get: cc_flags and either the optim flags or debug flags  # VSL random numbers
348    env['buildvars']['vsl_random']=int(env['vsl_random'])
349  sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.  if env['vsl_random']:
350        env.Append(CPPDEFINES = ['MKLRANDOM'])
351  if env["CC"] == "icc":  
352    # Intel compilers  env['IS_WINDOWS']=IS_WINDOWS
353    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"  
354    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"  ###################### Copy required environment vars ########################
355    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  
356    omp_optim     = "-openmp -openmp_report0"  # Windows doesn't use LD_LIBRARY_PATH but PATH instead
357    omp_debug     = "-openmp -openmp_report0"  if IS_WINDOWS:
358    omp_libs      = ['guide', 'pthread']      LD_LIBRARY_PATH_KEY='PATH'
359    pedantic      = ""      env['ENV']['LD_LIBRARY_PATH']=''
360    fatalwarning      = ""        # Switch to turn warnings into errors  else:
361    sysheaderopt      = ""      LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'
362  elif env["CC"] == "gcc":  
363    # GNU C on any system  env['LD_LIBRARY_PATH_KEY']=LD_LIBRARY_PATH_KEY
364    cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"  
365  #the long long warning occurs on the Mac  # the following env variables are exported for the unit tests
366    cc_optim      = "-O3"  
367    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  for key in 'OMP_NUM_THREADS', 'ESCRIPT_NUM_PROCS', 'ESCRIPT_NUM_NODES':
368    omp_optim     = "-fopenmp"      try:
369    omp_debug     = "-fopenmp"          env['ENV'][key] = os.environ[key]
370    omp_libs      = ['gomp']      except KeyError:
371    pedantic      = "-pedantic-errors -Wno-long-long"          env['ENV'][key] = 1
372    fatalwarning      = "-Werror"  
373    sysheaderopt      = "-isystem "  env_export=env['env_export']
374  elif env["CC"] == "cl":  env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME','KMP_MONITOR_STACKSIZE','TMPDIR','TEMP','TMP'])
375    # Microsoft Visual C on Windows  
376    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"  for key in set(env_export):
377    cc_optim      = "/O2 /Op /MT /W3"      try:
378    cc_debug      = "/Od /RTC1 /MTd /ZI -DBOUNDS_CHECK"          env['ENV'][key] = os.environ[key]
379    omp_optim     = ""      except KeyError:
380    omp_debug     = ""          pass
   omp_libs      = []  
   pedantic      = ""  
   fatalwarning      = ""  
   sysheaderopt      = ""  
 elif env["CC"] == "icl":  
   # intel C on Windows, see windows_intelc_options.py for a start  
   pedantic      = ""  
   fatalwarning      = ""  
   sysheaderopt      = ""  
   
   
 # If not specified in hostname_options.py then set them here  
 if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  
 if env["cc_optim"]  == "-DEFAULT_2": env['cc_optim'] = cc_optim  
 if env["cc_debug"]  == "-DEFAULT_3": env['cc_debug'] = cc_debug  
 if env["omp_optim"] == "-DEFAULT_4": env['omp_optim'] = omp_optim  
 if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  
 if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  
   
 #set up the autolazy values  
 if env['forcelazy']    != "leave_alone":  
   if env['forcelazy'] == 'on':  
     env.Append(CPPDEFINES='FAUTOLAZYON')  
   else:  
      if env['forcelazy'] == 'off':  
     env.Append(CPPDEFINES='FAUTOLAZYOFF')  
   
 # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  
 if not env["useopenmp"]:  
   env['omp_optim'] = ""  
   env['omp_debug'] = ""  
   env['omp_libs'] = []  
   
 if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0  
   
 ############ Copy environment variables into scons env #########  
   
 try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']  
 except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1  
   
 try: env['ENV']['PATH'] = os.environ['PATH']  
 except KeyError: pass  
   
 try: env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']  
 except KeyError: pass  
   
 try: env['ENV']['C_INCLUDE_PATH'] = os.environ['C_INCLUDE_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['LD_LIBRARY_PATH'] = os.environ['LD_LIBRARY_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['DISPLAY'] = os.environ['DISPLAY']  
 except KeyError: pass  
   
 try: env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']  
 except KeyError: pass  
   
 try: env['ENV']['HOME'] = os.environ['HOME']  
 except KeyError: pass  
   
 # Configure for test suite  
 env.PrependENVPath('PYTHONPATH', prefix)  
 env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
   
 env['ENV']['ESCRIPT_ROOT'] = prefix  
   
 ############ Set up paths for Configure() ######################  
   
 # Make a copy of an environment  
 # Use env.Clone if available, but fall back on env.Copy for older version of scons  
 def clone_env(env):  
   if 'Clone' in dir(env): return env.Clone()    # scons-0.98  
   else:                   return env.Copy() # scons-0.96  
   
 # Add cc option -I<Escript>/trunk/include  
 env.Append(CPPPATH      = [Dir('include')])  
   
 # Add cc option -L<Escript>/trunk/lib  
 env.Append(LIBPATH      = [Dir(env['libinstall'])])  
   
 if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])  
 if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])  
   
 if env['usepedantic']: env.Append(CCFLAGS = pedantic)  
   
 # MS Windows  
 if IS_WINDOWS_PLATFORM:  
   env.PrependENVPath('PATH',    [env['boost_lib_path']])  
   env.PrependENVPath('PATH',    [env['libinstall']])  
   if not env['share_esysUtils'] :  
     env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])  
   if not env['share_paso'] :  
     env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])  
   
   if env['usenetcdf']:  
     env.PrependENVPath('PATH',  [env['netCDF_lib_path']])  
   
 env.Append(ARFLAGS = env['ar_flags'])  
   
 # Get the global Subversion revision number for getVersion() method  
 try:  
    global_revision = os.popen("svnversion -n .").read()  
    global_revision = re.sub(":.*", "", global_revision)  
    global_revision = re.sub("[^0-9]", "", global_revision)  
 except:  
    global_revision="-1"  
 if global_revision == "": global_revision="-2"  
 env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])  
   
 ############ numarray (required) ###############################  
381    
382  try:  try:
383    from numarray import identity      env.PrependENVPath(LD_LIBRARY_PATH_KEY, os.environ[LD_LIBRARY_PATH_KEY])
384  except ImportError:  except KeyError:
385    print "Cannot import numarray, you need to set your PYTHONPATH"      pass
   sys.exit(1)  
   
 ############ C compiler (required) #############################  
   
 # Create a Configure() environment for checking existence of required libraries and headers  
 conf = Configure(clone_env(env))  
   
 # Test that the compiler is working  
 if not conf.CheckFunc('printf'):  
    print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])  
    sys.exit(1)  
   
 if conf.CheckFunc('gethostname'):  
   conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])  
   
 ############ python libraries (required) #######################  
   
   
 if not sysheaderopt =="":  
   conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])  
 else:  
   conf.env.AppendUnique(CPPPATH     = [env['python_path']])  
   
 conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  
 conf.env.AppendUnique(LIBS      = [env['python_libs']])  
386    
387  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs  if IS_OSX:
 conf.env.PrependENVPath('PYTHONPATH', prefix)  
 conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
   
 if not conf.CheckCHeader('Python.h'):  
   print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])  
   sys.exit(1)  
 if not conf.CheckFunc('Py_Exit'):  
   print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])  
   sys.exit(1)  
   
 ############ boost (required) ##################################  
   
 if not sysheaderopt =="":  
 # This is required because we can't -isystem /usr/system because it breaks std includes  
   if os.path.normpath(env['boost_path']) =="/usr/include":  
     conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))  
   else:  
     conf.env.Append(CCFLAGS=sysheaderopt+env['boost_path'])  
 else:  
   conf.env.AppendUnique(CPPPATH     = [env['boost_path']])  
   
 conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  
 conf.env.AppendUnique(LIBS      = [env['boost_libs']])  
   
 conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs  
 #ensure that our path entries remain at the front  
 conf.env.PrependENVPath('PYTHONPATH', prefix)  
 conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
   
 if not conf.CheckCXXHeader('boost/python.hpp'):  
   print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])  
   sys.exit(1)  
   
 if not conf.CheckFunc('PyObject_SetAttr'):  
   print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])  
   sys.exit(1)  
   
 # Commit changes to environment  
 env = conf.Finish()  
   
 ############ VTK (optional) ####################################  
   
 if env['usevtk']:  
388    try:    try:
389      import vtk      env.PrependENVPath('DYLD_LIBRARY_PATH', os.environ['DYLD_LIBRARY_PATH'])
390      env['usevtk'] = 1    except KeyError:
391    except ImportError:      pass
     env['usevtk'] = 0  
   
 # Add VTK to environment env if it was found  
 if env['usevtk']:  
   env.Append(CPPDEFINES = ['USE_VTK'])  
   
 ############ NetCDF (optional) #################################  
   
 conf = Configure(clone_env(env))  
   
 if env['usenetcdf']:  
   conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])  
   conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
   
 if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  
 if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  
   
 # Add NetCDF to environment env if it was found  
 if env['usenetcdf']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['USE_NETCDF'])  
 else:  
   conf.Finish()  
392    
 ############ PAPI (optional) ###################################  
393    
394  # Start a new configure environment that reflects what we've already found  # these shouldn't be needed
395  conf = Configure(clone_env(env))  #for key in 'C_INCLUDE_PATH','CPLUS_INCLUDE_PATH','LIBRARY_PATH':
396    #    try:
397    #        env['ENV'][key] = os.environ[key]
398    #    except KeyError:
399    #        pass
400    
401  if env['usepapi']:  try:
402    conf.env.AppendUnique(CPPPATH = [env['papi_path']])      env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
403    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])  except KeyError:
404    conf.env.AppendUnique(LIBS    = [env['papi_libs']])      pass
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
   
 if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  
 if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  
   
 # Add PAPI to environment env if it was found  
 if env['usepapi']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['BLOCKPAPI'])  
 else:  
   conf.Finish()  
   
 ############ MKL (optional) ####################################  
   
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env))  
   
 if env['usemkl']:  
   conf.env.AppendUnique(CPPPATH = [env['mkl_path']])  
   conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['mkl_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
   
 if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  
 if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0  
   
 # Add MKL to environment env if it was found  
 if env['usemkl']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['MKL'])  
 else:  
   conf.Finish()  
   
 ############ UMFPACK (optional) ################################  
   
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env))  
   
 if env['useumfpack']:  
   conf.env.AppendUnique(CPPPATH = [env['ufc_path']])  
   conf.env.AppendUnique(CPPPATH = [env['umf_path']])  
   conf.env.AppendUnique(LIBPATH = [env['umf_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['umf_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['amd_path']])  
   conf.env.AppendUnique(LIBPATH = [env['amd_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['amd_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['blas_path']])  
   conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['blas_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
   
 if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
 # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?  
   
 # Add UMFPACK to environment env if it was found  
 if env['useumfpack']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['UMFPACK'])  
 else:  
   conf.Finish()  
405    
406  ############ Silo (optional) ###################################  ######################## Add some custom builders ############################
407    
408  if env['usesilo']:  if env['pythoncmd']=='python':
409    conf = Configure(clone_env(env))      py_builder = Builder(action = build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
   conf.env.AppendUnique(CPPPATH = [env['silo_path']])  
   conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])  
   conf.env.AppendUnique(LIBS = [env['silo_libs']])  
   if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0  
   if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0  
   conf.Finish()  
   
 # Add the path to Silo to environment env if it was found.  
 # Note that we do not add the libs since they are only needed for the  
 # escriptreader library and tools.  
 if env['usesilo']:  
   env.AppendUnique(CPPPATH = [env['silo_path']])  
   env.AppendUnique(LIBPATH = [env['silo_lib_path']])  
   env.Append(CPPDEFINES = ['HAVE_SILO'])  
   
 ############ Add the compiler flags ############################  
   
 # Enable debug by choosing either cc_debug or cc_optim  
 if env['usedebug']:  
   env.Append(CCFLAGS        = env['cc_debug'])  
   env.Append(CCFLAGS        = env['omp_debug'])  
410  else:  else:
411    env.Append(CCFLAGS        = env['cc_optim'])      py_builder = Builder(action = env['pythoncmd']+" scripts/py_comp.py $SOURCE $TARGET", suffix = '.pyc', src_suffix = '.py', single_source=True)
   env.Append(CCFLAGS        = env['omp_optim'])  
   
 # Always use cc_flags  
 env.Append(CCFLAGS      = env['cc_flags'])  
 env.Append(LIBS         = [env['omp_libs']])  
   
   
 ############ Add some custom builders ##########################  
   
 py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  
412  env.Append(BUILDERS = {'PyCompile' : py_builder});  env.Append(BUILDERS = {'PyCompile' : py_builder});
413    
414  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  runUnitTest_builder = Builder(action = runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
415  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
416    
417  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  runPyUnitTest_builder = Builder(action = runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
418  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
419    
420  ############ MPI (optional) ####################################  epstopdfbuilder = Builder(action = eps2pdf, suffix='.pdf', src_suffix='.eps', single_source=True)
421    env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
 # Create a modified environment for MPI programs (identical to env if usempi=no)  
 env_mpi = clone_env(env)  
422    
423  # Start a new configure environment that reflects what we've already found  ############################ Dependency checks ###############################
 conf = Configure(clone_env(env_mpi))  
424    
425  if env_mpi['usempi']:  ######## Compiler
426    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])  env=checkCompiler(env)
   conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
   
 if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  
 if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  
   
 # Add MPI to environment env_mpi if it was found  
 if env_mpi['usempi']:  
   env_mpi = conf.Finish()  
   env_mpi.Append(CPPDEFINES = ['PASO_MPI', 'MPI_NO_CPPBIND', env_mpi['MPICH_IGNORE_CXX_SEEK']])  
 else:  
   conf.Finish()  
   
 env['usempi'] = env_mpi['usempi']  
   
 ############ ParMETIS (optional) ###############################  
427    
428  # Start a new configure environment that reflects what we've already found  ######## Python headers & library (required)
429  conf = Configure(clone_env(env_mpi))  env=checkPython(env)
430    
431  if not env_mpi['usempi']: env_mpi['useparmetis'] = 0  ######## boost & boost-python (required)
432    env=checkBoost(env)
433    
434  if env_mpi['useparmetis']:  ######## numpy (required) and numpy headers (optional)
435    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])  env=checkNumpy(env)
   conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
436    
437  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  ######## CppUnit (required for tests)
438  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  env=checkCppUnit(env)
   
 # Add ParMETIS to environment env_mpi if it was found  
 if env_mpi['useparmetis']:  
   env_mpi = conf.Finish()  
   env_mpi.Append(CPPDEFINES = ['USE_PARMETIS'])  
 else:  
   conf.Finish()  
439    
440  env['useparmetis'] = env_mpi['useparmetis']  ######## optional python modules (sympy, pyproj)
441    env=checkOptionalModules(env)
442    
443  ############ Now we switch on Warnings as errors ###############  ######## optional dependencies (netCDF, PAPI, MKL, UMFPACK, Lapack, Silo, ...)
444    env=checkOptionalLibraries(env)
445    
446  #this needs to be done after configuration because the scons test files have warnings in them  ######## PDFLaTeX (for documentation)
447    env=checkPDFLatex(env)
 if ((fatalwarning != "") and (env['usewarnings'])):  
   env.Append(CCFLAGS        = fatalwarning)  
   env_mpi.Append(CCFLAGS        = fatalwarning)  
   
 ############ Summarize our environment #########################  
   
 print ""  
 print "Summary of configuration (see ./config.log for information)"  
 print " Using python libraries"  
 print " Using numarray"  
 print " Using boost"  
 if env['usenetcdf']: print "    Using NetCDF"  
 else: print "   Not using NetCDF"  
 if env['usevtk']: print "   Using VTK"  
 else: print "   Not using VTK"  
 if env['usemkl']: print "   Using MKL"  
 else: print "   Not using MKL"  
 if env['useumfpack']: print "   Using UMFPACK"  
 else: print "   Not using UMFPACK"  
 if env['usesilo']: print "  Using Silo"  
 else: print "   Not using Silo"  
 if env['useopenmp']: print "    Using OpenMP"  
 else: print "   Not using OpenMP"  
 if env['usempi']: print "   Using MPI"  
 else: print "   Not using MPI"  
 if env['useparmetis']: print "  Using ParMETIS"  
 else: print "   Not using ParMETIS (requires MPI)"  
 if env['usepapi']: print "  Using PAPI"  
 else: print "   Not using PAPI"  
 if env['usedebug']: print " Compiling for debug"  
 else: print "   Not compiling for debug"  
 print " Installing in", prefix  
 if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"  
 else: print "   Not treating warnings as errors"  
 print ""  
   
 ############ Delete option-dependent files #####################  
   
 Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))  
 Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))  
 Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))  
 Execute(Delete(env['libinstall'] + "pyversion"))  
 if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))  
448    
449    # keep some of our install paths first in the list for the unit tests
450    env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
451    env.PrependENVPath('PYTHONPATH', prefix)
452    env['ENV']['ESCRIPT_ROOT'] = prefix
453    
454  ############ Build the subdirectories ##########################  if not env['verbose']:
455        env['CXXCOMSTR'] = "Compiling $TARGET"
456        env['SHCXXCOMSTR'] = "Compiling $TARGET"
457        env['ARCOMSTR'] = "Linking $TARGET"
458        env['LINKCOMSTR'] = "Linking $TARGET"
459        env['SHLINKCOMSTR'] = "Linking $TARGET"
460        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
461        env['BIBTEXCOMSTR'] = "Generating bibliography $TARGET"
462        env['MAKEINDEXCOMSTR'] = "Generating index $TARGET"
463        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
464        #Progress(['Checking -\r', 'Checking \\\r', 'Checking |\r', 'Checking /\r'], interval=17)
465    
466    ####################### Configure the subdirectories #########################
467    
468    # remove obsolete files
469    if not env['usempi']:
470        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPI')))
471        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPIredirect')))
472    
473  from grouptest import *  from grouptest import *
   
474  TestGroups=[]  TestGroups=[]
475    
476  Export(  # keep an environment without warnings-as-errors
477    ["env",  dodgy_env=env.Clone()
    "env_mpi",  
    "clone_env",  
    "IS_WINDOWS_PLATFORM",  
    "TestGroups"  
    ]  
   )  
478    
479  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  # now add warnings-as-errors flags. This needs to be done after configuration
480  env.SConscript(dirs = ['tools/libescriptreader/src'], build_dir='build/$PLATFORM/tools/libescriptreader', duplicate=0)  # because the scons test files have warnings in them
481  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  if ((fatalwarning != '') and (env['werror'])):
482  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)      env.Append(CCFLAGS = fatalwarning)
 env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  
 env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  
 env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)  
 env.SConscript(dirs = ['doc'], build_dir='build/$PLATFORM/doc', duplicate=0)  
 env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  
 env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  
 env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  
 env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)  
 env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)  
483    
484    Export(
485      ['env',
486       'dodgy_env',
487       'IS_WINDOWS',
488       'TestGroups'
489      ]
490    )
491    
492  ############ Remember what optimizations we used ###############  env.SConscript(dirs = ['tools/escriptconvert'], variant_dir='$BUILD_DIR/$PLATFORM/tools/escriptconvert', duplicate=0)
493    env.SConscript(dirs = ['paso/src'], variant_dir='$BUILD_DIR/$PLATFORM/paso', duplicate=0)
494    env.SConscript(dirs = ['weipa/src'], variant_dir='$BUILD_DIR/$PLATFORM/weipa', duplicate=0)
495    env.SConscript(dirs = ['escript/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/escript', duplicate=0)
496    
497    #This will pull in the escriptcore/py_src and escriptcore/test
498    env.SConscript(dirs = ['escriptcore/src'], variant_dir='$BUILD_DIR/$PLATFORM/escriptcore', duplicate=0)
499    #env.SConscript(dirs = ['escript/test'], variant_dir='$BUILD_DIR/$PLATFORM/escript/test', duplicate=0)
500    env.SConscript(dirs = ['esysUtils/src'], variant_dir='$BUILD_DIR/$PLATFORM/esysUtils', duplicate=0)
501    env.SConscript(dirs = ['pasowrap/src'], variant_dir='$BUILD_DIR/$PLATFORM/pasowrap', duplicate=0)
502    env.SConscript(dirs = ['dudley/src'], variant_dir='$BUILD_DIR/$PLATFORM/dudley', duplicate=0)
503    env.SConscript(dirs = ['finley/src'], variant_dir='$BUILD_DIR/$PLATFORM/finley', duplicate=0)
504    env.SConscript(dirs = ['ripley/src'], variant_dir='$BUILD_DIR/$PLATFORM/ripley', duplicate=0)
505    env.SConscript(dirs = ['downunder/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/downunder', duplicate=0)
506    env.SConscript(dirs = ['modellib/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/modellib', duplicate=0)
507    env.SConscript(dirs = ['pycad/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pycad', duplicate=0)
508    env.SConscript(dirs = ['pythonMPI/src'], variant_dir='$BUILD_DIR/$PLATFORM/pythonMPI', duplicate=0)
509    env.SConscript(dirs = ['doc'], variant_dir='$BUILD_DIR/$PLATFORM/doc', duplicate=0)
510    env.SConscript(dirs = ['paso/profiling'], variant_dir='$BUILD_DIR/$PLATFORM/paso/profiling', duplicate=0)
511    
 remember_list = []  
512    
513  if env['usedebug']:  ######################## Populate the buildvars file #########################
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))  
514    
515  if env['usempi']:  write_buildvars(env)
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))  
516    
517  if env['omp_optim'] != '':  ################### Targets to build and install libraries ###################
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))  
518    
519  env.Alias('remember_options', remember_list)  target_init = env.Command(os.path.join(env['pyinstall'],'__init__.py'), None, Touch('$TARGET'))
520    env.Alias('target_init', [target_init])
521    # delete buildvars upon cleanup
522    env.Clean('target_init', os.path.join(env['libinstall'], 'buildvars'))
523    
524    # The headers have to be installed prior to build in order to satisfy
525    # #include <paso/Common.h>
526    env.Alias('build_esysUtils', ['install_esysUtils_headers', 'build_esysUtils_lib'])
527    env.Alias('install_esysUtils', ['build_esysUtils', 'install_esysUtils_lib'])
528    
529  ############### Record python interpreter version ##############  env.Alias('build_paso', ['install_paso_headers', 'build_paso_lib'])
530    env.Alias('install_paso', ['build_paso', 'install_paso_lib'])
531    
532  if not IS_WINDOWS_PLATFORM:  env.Alias('build_escript', ['install_escript_headers', 'build_escript_lib', 'build_escriptcpp_lib'])
533    versionstring="Python "+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])  env.Alias('install_escript', ['build_escript', 'install_escript_lib', 'install_escriptcpp_lib', 'install_escriptcore_py', 'install_escript_py'])
   os.system("echo "+versionstring+" > "+env['libinstall']+"/pyversion")  
534    
535  ############ Targets to build and install libraries ############  env.Alias('build_pasowrap', ['install_pasowrap_headers', 'build_pasowrap_lib', 'build_pasowrapcpp_lib'])
536    env.Alias('install_pasowrap', ['build_pasowrap', 'install_pasowrap_lib', 'install_pasowrapcpp_lib', 'install_pasowrap_py'])
537    
538  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  env.Alias('build_dudley', ['install_dudley_headers', 'build_dudley_lib', 'build_dudleycpp_lib'])
539  env.Alias('target_init', [target_init])  env.Alias('install_dudley', ['build_dudley', 'install_dudley_lib', 'install_dudleycpp_lib', 'install_dudley_py'])
540    
541  # The headers have to be installed prior to build in order to satisfy #include <paso/Common.h>  env.Alias('build_finley', ['install_finley_headers', 'build_finley_lib', 'build_finleycpp_lib'])
542  env.Alias('build_esysUtils', ['target_install_esysUtils_headers', 'target_esysUtils_a'])  env.Alias('install_finley', ['build_finley', 'install_finley_lib', 'install_finleycpp_lib', 'install_finley_py'])
 env.Alias('install_esysUtils', ['build_esysUtils', 'target_install_esysUtils_a'])  
543    
544  env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])  env.Alias('build_ripley', ['install_ripley_headers', 'build_ripley_lib', 'build_ripleycpp_lib'])
545  env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])  env.Alias('install_ripley', ['build_ripley', 'install_ripley_lib', 'install_ripleycpp_lib', 'install_ripley_py'])
546    
547  env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])  env.Alias('build_weipa', ['install_weipa_headers', 'build_weipa_lib', 'build_weipacpp_lib'])
548  env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])  env.Alias('install_weipa', ['build_weipa', 'install_weipa_lib', 'install_weipacpp_lib', 'install_weipa_py'])
549    
550  env.Alias('build_finley', ['target_install_finley_headers', 'target_finley_so', 'target_finleycpp_so'])  env.Alias('build_escriptreader', ['install_weipa_headers', 'build_escriptreader_lib'])
551  env.Alias('install_finley', ['build_finley', 'target_install_finley_so', 'target_install_finleycpp_so', 'target_install_finley_py'])  env.Alias('install_escriptreader', ['build_escriptreader', 'install_escriptreader_lib'])
552    
553  # Now gather all the above into a couple easy targets: build_all and install_all  # Now gather all the above into some easy targets: build_all and install_all
554  build_all_list = []  build_all_list = []
555  build_all_list += ['build_esysUtils']  build_all_list += ['build_esysUtils']
556  build_all_list += ['build_paso']  build_all_list += ['build_paso']
557  build_all_list += ['build_escript']  build_all_list += ['build_escript']
558    build_all_list += ['build_pasowrap']
559    build_all_list += ['build_dudley']
560  build_all_list += ['build_finley']  build_all_list += ['build_finley']
561  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  build_all_list += ['build_ripley']
562  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_escript_wrapper']  build_all_list += ['build_weipa']
563  if env['usesilo']:  build_all_list += ['target_escript2silo']  if not IS_WINDOWS: build_all_list += ['build_escriptreader']
564    if env['usempi']:   build_all_list += ['build_pythonMPI']
565    build_all_list += ['build_escriptconvert']
566  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
567    
568  install_all_list = []  install_all_list = []
# Line 746  install_all_list += ['target_init'] Line 570  install_all_list += ['target_init']
570  install_all_list += ['install_esysUtils']  install_all_list += ['install_esysUtils']
571  install_all_list += ['install_paso']  install_all_list += ['install_paso']
572  install_all_list += ['install_escript']  install_all_list += ['install_escript']
573    install_all_list += ['install_pasowrap']
574    install_all_list += ['install_dudley']
575  install_all_list += ['install_finley']  install_all_list += ['install_finley']
576  install_all_list += ['target_install_pyvisi_py']  install_all_list += ['install_ripley']
577  install_all_list += ['target_install_modellib_py']  install_all_list += ['install_weipa']
578  install_all_list += ['target_install_pycad_py']  if not IS_WINDOWS: install_all_list += ['install_escriptreader']
579  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  install_all_list += ['install_downunder_py']
580  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_escript_wrapper']  install_all_list += ['install_modellib_py']
581  if env['usesilo']:  install_all_list += ['target_install_escript2silo']  install_all_list += ['install_pycad_py']
582  install_all_list += ['remember_options']  if env['usempi']:   install_all_list += ['install_pythonMPI']
583    install_all_list += ['install_escriptconvert']
584  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
585    
586  # Default target is install  # Default target is install
587  env.Default('install_all')  env.Default('install_all')
588    
589  ############ Targets to build and run the test suite ###########  ################## Targets to build and run the test suite ###################
590    
591  env.Alias('build_cppunittest', ['target_install_cppunittest_headers', 'target_cppunittest_a'])  if not env['cppunit']:
592  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])      test_msg = env.Command('.dummy.', None, '@echo "Cannot run C++ unit tests, CppUnit not found!";exit 1')
593  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])      env.Alias('run_tests', test_msg)
594  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])      env.Alias('build_tests', '')
595    env.Alias('run_tests', ['install_all'])
596    env.Alias('all_tests', ['install_all', 'run_tests', 'py_tests'])
597  env.Alias('build_full',['install_all','build_tests','build_py_tests'])  env.Alias('build_full',['install_all','build_tests','build_py_tests'])
598    env.Alias('build_PasoTests','$BUILD_DIR/$PLATFORM/paso/profiling/PasoTests')
599    
600  ############ Targets to build the documentation ################  ##################### Targets to build the documentation #####################
601    
602  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])  env.Alias('pdfdocs',['user_pdf', 'install_pdf', 'cookbook_pdf', 'inversion_pdf'])
603    env.Alias('basedocs', ['pdfdocs','examples_tarfile', 'examples_zipfile', 'api_doxygen'])
604    env.Alias('docs', ['basedocs', 'sphinxdoc'])
605    env.Alias('release_prep', ['docs', 'install_all'])
606    env.Alias('release_prep_old', ['basedocs', 'api_epydoc', 'install_all'])
607    
608    # The test scripts are always generated, this target allows us to
609    # generate the testscripts without doing a full build
610    env.Alias('testscripts',[])
611    
612    if not IS_WINDOWS:
613        generateTestScripts(env, TestGroups)
614    
615    
616    
617    ######################## Summarize our environment ###########################
618    def print_summary():
619        print("")
620        print("*** Config Summary (see config.log and <prefix>/lib/buildvars for details) ***")
621        print("Escript/Finley revision %s"%global_revision)
622        print("  Install prefix:  %s"%env['prefix'])
623        print("          Python:  %s"%sysconfig.PREFIX)
624        print("           boost:  %s"%env['boost_prefix'])
625        if env['numpy_h']:
626            print("           numpy:  YES (with headers)")
627        else:
628            print("           numpy:  YES (without headers)")
629        if env['usempi']:
630            print("             MPI:  YES (flavour: %s)"%env['mpi'])
631        else:
632            print("             MPI:  DISABLED")
633        if env['uselapack']:
634            print("          LAPACK:  YES (flavour: %s)"%env['lapack'])
635        else:
636            print("          LAPACK:  DISABLED")
637        d_list=[]
638        e_list=[]
639        for i in 'debug','openmp','boomeramg','gdal','mkl','netcdf','papi','parmetis','pyproj','scipy','silo','sympy','umfpack','visit','vsl_random':
640            if env[i]: e_list.append(i)
641            else: d_list.append(i)
642        for i in e_list:
643            print("%16s:  YES"%i)
644        for i in d_list:
645            print("%16s:  DISABLED"%i)
646        if env['cppunit']:
647            print("         CppUnit:  FOUND")
648        else:
649            print("         CppUnit:  NOT FOUND")
650        if env['gmsh']=='m':
651            print("            gmsh:  FOUND, MPI-ENABLED")
652        elif env['gmsh']=='s':
653            print("            gmsh:  FOUND")
654        else:
655            print("            gmsh:  NOT FOUND")
656    
657        if ((fatalwarning != '') and (env['werror'])):
658            print("  Treating warnings as errors")
659        else:
660            print("  NOT treating warnings as errors")
661        print("")
662        for w in env['warnings']:
663            print("WARNING: %s"%w)
664    
665  if not IS_WINDOWS_PLATFORM:  atexit.register(print_summary)
    try:  
     utest=open("utest.sh","w")  
     build_platform=os.name      #Sometimes Mac python says it is posix  
     if (build_platform=='posix') and platform.system()=="Darwin":  
         build_platform='darwin'  
     utest.write(GroupTest.makeHeader(build_platform))  
     for tests in TestGroups:  
         utest.write(tests.makeString())  
     utest.close()  
     os.chmod("utest.sh",stat.S_IRWXU|stat.S_IRGRP|stat.S_IXGRP|stat.S_IROTH|stat.S_IXOTH)  
     print "utest.sh written"  
    except IOError:  
     print "Error attempting to write unittests file."  
     sys.exit(1)  
666    

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