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revision 1785 by ksteube, Thu Sep 11 23:35:42 2008 UTC revision 2334 by jfenwick, Thu Mar 26 03:05:33 2009 UTC
# Line 1  Line 1 
1  #         Copyright 2006 by ACcESS MNRF  
2    ########################################################
3    #
4    # Copyright (c) 2003-2008 by University of Queensland
5    # Earth Systems Science Computational Center (ESSCC)
6    # http://www.uq.edu.au/esscc
7    #
8    # Primary Business: Queensland, Australia
9    # Licensed under the Open Software License version 3.0
10    # http://www.opensource.org/licenses/osl-3.0.php
11  #  #
12  #              http://www.access.edu.au  ########################################################
13  #       Primary Business: Queensland, Australia  
 #  Licensed under the Open Software License version 3.0  
 #     http://www.opensource.org/licenses/osl-3.0.php  
14    
15  EnsureSConsVersion(0,96,91)  EnsureSConsVersion(0,96,91)
16  EnsurePythonVersion(2,3)  EnsurePythonVersion(2,3)
17    
18  import sys, os, re, socket  import sys, os, re, socket, platform, stat
19    
20  # Add our extensions  # Add our extensions
21  if os.path.isdir('scons'): sys.path.append('scons')  if os.path.isdir('scons'): sys.path.append('scons')
# Line 30  prefix = ARGUMENTS.get('prefix', Dir('#. Line 37  prefix = ARGUMENTS.get('prefix', Dir('#.
37  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])
38  tmp = os.path.join("scons",hostname+"_options.py")  tmp = os.path.join("scons",hostname+"_options.py")
39  options_file = ARGUMENTS.get('options_file', tmp)  options_file = ARGUMENTS.get('options_file', tmp)
40  if not os.path.isfile(options_file): options_file = False  if not os.path.isfile(options_file):
41  else: print "Options file is", options_file    options_file = False
42      print "Options file not found (expected '%s')" % tmp
43    else:
44      print "Options file is", options_file
45    
46  # Load options file and command-line arguments  # Load options file and command-line arguments
47  opts = Options(options_file, ARGUMENTS)  opts = Options(options_file, ARGUMENTS)
# Line 50  opts.AddOptions( Line 60  opts.AddOptions(
60    BoolOption('usedebug', 'Do you want a debug build?', 'no'),    BoolOption('usedebug', 'Do you want a debug build?', 'no'),
61    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),
62    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),
63      ('win_cc_name', 'windows C compiler name if needed', 'msvc'),
64    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below
65    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),
66    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),
# Line 61  opts.AddOptions( Line 72  opts.AddOptions(
72    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
73    ('sys_libs', 'System libraries to link with', []),    ('sys_libs', 'System libraries to link with', []),
74    ('ar_flags', 'Static library archiver flags to use', ''),    ('ar_flags', 'Static library archiver flags to use', ''),
75    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'yes'),    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'no'),
76    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'yes'),    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),
77      BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),
78      ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),
79  # Python  # Python
80    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),
81    ('python_lib_path', 'Path to Python libs', usr_lib),    ('python_lib_path', 'Path to Python libs', usr_lib),
# Line 107  opts.AddOptions( Line 120  opts.AddOptions(
120    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),
121    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),
122    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),
123    # Silo
124      BoolOption('usesilo', 'switch on/off the usage of Silo', 'yes'),
125      ('silo_path', 'Path to Silo includes', '/usr/include'),
126      ('silo_lib_path', 'Path to Silo libs', usr_lib),
127      ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
128  # AMD (used by UMFPACK)  # AMD (used by UMFPACK)
129    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),
130    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('amd_lib_path', 'Path to AMD libs', usr_lib),
# Line 114  opts.AddOptions( Line 132  opts.AddOptions(
132  # BLAS (used by UMFPACK)  # BLAS (used by UMFPACK)
133    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),
134    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    ('blas_lib_path', 'Path to BLAS libs', usr_lib),
135    ('blas_libs', 'BLAS libraries to link with', ['blas'])    ('blas_libs', 'BLAS libraries to link with', ['blas']),
136    # An option for specifying the compiler tools set (see windows branch).
137      ('tools_names', 'allow control over the tools in the env setup', ['intelc']),
138    # finer control over library building, intel aggressive global optimisation
139    # works with dynamic libraries on windows.
140      ('share_esysUtils', 'control static or dynamic esysUtils lib', False),
141      ('share_paso', 'control static or dynamic paso lib', False)
142  )  )
143    
144  ############ Specify which compilers to use ####################  ############ Specify which compilers to use ####################
# Line 123  opts.AddOptions( Line 147  opts.AddOptions(
147  # failing to find the compilers.  This warning can be safely ignored.  # failing to find the compilers.  This warning can be safely ignored.
148    
149  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
150        env = Environment(tools = ['default', 'msvc'], options = opts)        env = Environment(options = opts)
151          env = Environment(tools = ['default'] + env['tools_names'],
152                            options = opts)
153  else:  else:
154     if socket.gethostname().split('.')[0] == 'service0':     if socket.gethostname().split('.')[0] == 'service0':
155        env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default', 'intelc'], options = opts)
# Line 144  if env['useMPI']: env['usempi'] = 1 Line 170  if env['useMPI']: env['usempi'] = 1
170  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)
171  # For both C and C++ you get: cc_flags and either the optim flags or debug flags  # For both C and C++ you get: cc_flags and either the optim flags or debug flags
172    
173    sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.
174    
175  if env["CC"] == "icc":  if env["CC"] == "icc":
176    # Intel compilers    # Intel compilers
177    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
178    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"
179    cc_debug      = "-g -O0 -UDOASSERT -DDOPROF -DBOUNDS_CHECK"    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
180    omp_optim     = "-openmp -openmp_report0"    omp_optim     = "-openmp -openmp_report0"
181    omp_debug     = "-openmp -openmp_report0"    omp_debug     = "-openmp -openmp_report0"
182    omp_libs      = ['guide', 'pthread']    omp_libs      = ['guide', 'pthread']
183    pedantic      = ""    pedantic      = ""
184      fatalwarning      = ""        # Switch to turn warnings into errors
185      sysheaderopt      = ""
186  elif env["CC"] == "gcc":  elif env["CC"] == "gcc":
187    # GNU C on any system    # GNU C on any system
188    cc_flags      = "-fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER"    cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"
189    #the long long warning occurs on the Mac
190    cc_optim      = "-O3"    cc_optim      = "-O3"
191    cc_debug      = "-g -O0 -UDOASSERT -DDOPROF -DBOUNDS_CHECK"    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
192    omp_optim     = ""    omp_optim     = "-fopenmp"
193    omp_debug     = ""    omp_debug     = "-fopenmp"
194    omp_libs      = []    omp_libs      = ['gomp']
195    pedantic      = "-pedantic-errors -Wno-long-long"    pedantic      = "-pedantic-errors -Wno-long-long"
196      fatalwarning      = "-Werror"
197      sysheaderopt      = "-isystem "
198  elif env["CC"] == "cl":  elif env["CC"] == "cl":
199    # Microsoft Visual C on Windows    # Microsoft Visual C on Windows
200    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"
# Line 171  elif env["CC"] == "cl": Line 204  elif env["CC"] == "cl":
204    omp_debug     = ""    omp_debug     = ""
205    omp_libs      = []    omp_libs      = []
206    pedantic      = ""    pedantic      = ""
207      fatalwarning      = ""
208      sysheaderopt      = ""
209    elif env["CC"] == "icl":
210      # intel C on Windows, see windows_intelc_options.py for a start
211      pedantic      = ""
212      fatalwarning      = ""
213      sysheaderopt      = ""
214    
215    
216  # If not specified in hostname_options.py then set them here  # If not specified in hostname_options.py then set them here
217  if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags
# Line 180  if env["omp_optim"]    == "-DEFAULT_4": env Line 221  if env["omp_optim"]    == "-DEFAULT_4": env
221  if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug
222  if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs
223    
224    #set up the autolazy values
225    if env['forcelazy']    != "leave_alone":
226      if env['forcelazy'] == 'on':
227        env.Append(CPPDEFINES='FAUTOLAZYON')
228      else:
229         if env['forcelazy'] == 'off':
230        env.Append(CPPDEFINES='FAUTOLAZYOFF')
231    
232  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty
233  if not env["useopenmp"]:  if not env["useopenmp"]:
234    env['omp_optim'] = ""    env['omp_optim'] = ""
# Line 240  env.Append(CPPPATH     = [Dir('include')]) Line 289  env.Append(CPPPATH     = [Dir('include')])
289  # Add cc option -L<Escript>/trunk/lib  # Add cc option -L<Escript>/trunk/lib
290  env.Append(LIBPATH      = [Dir(env['libinstall'])])  env.Append(LIBPATH      = [Dir(env['libinstall'])])
291    
 env.Append(CPPDEFINES = ['ESCRIPT_EXPORTS', 'FINLEY_EXPORTS'])  
   
292  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])
293  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])
294    
# Line 249  if env['usepedantic']: env.Append(CCFLAG Line 296  if env['usepedantic']: env.Append(CCFLAG
296    
297  # MS Windows  # MS Windows
298  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
299    env.PrependENVPath('PATH',    [env['boost_lib_path']])    env.AppendENVPath('PATH', [env['boost_lib_path']])
300    env.PrependENVPath('PATH',    [env['libinstall']])    env.AppendENVPath('PATH', [env['libinstall']])
301      if not env['share_esysUtils'] :
302        env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
303      if not env['share_paso'] :
304        env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
305    
306    if env['usenetcdf']:    if env['usenetcdf']:
307      env.PrependENVPath('PATH',  [env['netCDF_lib_path']])      env.AppendENVPath('PATH',   [env['netCDF_lib_path']])
308    
309  env.Append(ARFLAGS = env['ar_flags'])  env.Append(ARFLAGS = env['ar_flags'])
310    
# Line 281  conf = Configure(clone_env(env)) Line 333  conf = Configure(clone_env(env))
333    
334  # Test that the compiler is working  # Test that the compiler is working
335  if not conf.CheckFunc('printf'):  if not conf.CheckFunc('printf'):
336    print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])     print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])
337    sys.exit(1)     sys.exit(1)
338    
339  if not conf.CheckFunc('gethostname'):  if conf.CheckFunc('gethostname'):
340    env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])    conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])
341    
342  ############ python libraries (required) #######################  ############ python libraries (required) #######################
343    
344  conf.env.AppendUnique(CPPPATH       = [env['python_path']])  
345    if not sysheaderopt =="":
346      conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])
347    else:
348      conf.env.AppendUnique(CPPPATH     = [env['python_path']])
349    
350  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])
351  conf.env.AppendUnique(LIBS      = [env['python_libs']])  conf.env.AppendUnique(LIBS      = [env['python_libs']])
352    
353  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs
354    conf.env.PrependENVPath('PYTHONPATH', prefix)
355    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
356    
357  if not conf.CheckCHeader('Python.h'):  if not conf.CheckCHeader('Python.h'):
358    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])
359    sys.exit(1)    sys.exit(1)
360  if not conf.CheckFunc('Py_Main'):  if not conf.CheckFunc('Py_Exit'):
361    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])
362    sys.exit(1)    sys.exit(1)
363    
364  ############ boost (required) ##################################  ############ boost (required) ##################################
365    
366  conf.env.AppendUnique(CPPPATH       = [env['boost_path']])  if not sysheaderopt =="":
367    # This is required because we can't -isystem /usr/system because it breaks std includes
368      if os.path.normpath(env['boost_path']) =="/usr/include":
369        conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))
370      else:
371        conf.env.Append(CCFLAGS=sysheaderopt+env['boost_path'])
372    else:
373      conf.env.AppendUnique(CPPPATH     = [env['boost_path']])
374    
375  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])
376  conf.env.AppendUnique(LIBS      = [env['boost_libs']])  conf.env.AppendUnique(LIBS      = [env['boost_libs']])
377    
378  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs
379    #ensure that our path entries remain at the front
380    conf.env.PrependENVPath('PYTHONPATH', prefix)
381    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
382    
383  if not conf.CheckCXXHeader('boost/python.hpp'):  if not conf.CheckCXXHeader('boost/python.hpp'):
384    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])
385    sys.exit(1)    sys.exit(1)
386    
387  if not conf.CheckFunc('PyObject_SetAttr'):  if not conf.CheckFunc('PyObject_SetAttr'):
388    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])
389    sys.exit(1)    sys.exit(1)
# Line 337  if env['usevtk']: Line 408  if env['usevtk']:
408    
409  conf = Configure(clone_env(env))  conf = Configure(clone_env(env))
410    
411    print "<1<<<<"+str(conf.env['ENV']['LD_LIBRARY_PATH'])
412    
413    
414  if env['usenetcdf']:  if env['usenetcdf']:
415    conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])    conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])
416    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])
417    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])
418    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs
419      #ensure that our path entries remain at the front
420      conf.env.PrependENVPath('PYTHONPATH', prefix)
421      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
422    
423  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0
424  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0
425    
426    print "<2<<<<"+str(conf.env['ENV']['LD_LIBRARY_PATH'])
427    
428  # Add NetCDF to environment env if it was found  # Add NetCDF to environment env if it was found
429  if env['usenetcdf']:  if env['usenetcdf']:
430    env = conf.Finish()    env = conf.Finish()
# Line 353  if env['usenetcdf']: Line 432  if env['usenetcdf']:
432  else:  else:
433    conf.Finish()    conf.Finish()
434    
435    print "<A<<<<"+str(env['ENV']['LD_LIBRARY_PATH'])
436    
437  ############ PAPI (optional) ###################################  ############ PAPI (optional) ###################################
438    
439  # Start a new configure environment that reflects what we've already found  # Start a new configure environment that reflects what we've already found
# Line 363  if env['usepapi']: Line 444  if env['usepapi']:
444    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])
445    conf.env.AppendUnique(LIBS    = [env['papi_libs']])    conf.env.AppendUnique(LIBS    = [env['papi_libs']])
446    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs
447      #ensure that our path entries remain at the front
448      conf.env.PrependENVPath('PYTHONPATH', prefix)
449      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
450    
451  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0
452  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0
# Line 384  if env['usemkl']: Line 468  if env['usemkl']:
468    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])
469    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])
470    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs
471      #ensure that our path entries remain at the front
472      conf.env.PrependENVPath('PYTHONPATH', prefix)
473      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
474    
475  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0
476  if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0
# Line 414  if env['useumfpack']: Line 501  if env['useumfpack']:
501    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs
502    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs
503    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs
504      #ensure that our path entries remain at the front
505      conf.env.PrependENVPath('PYTHONPATH', prefix)
506      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
507    
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
508  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0
509    if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0
510    # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?
511    
512  # Add UMFPACK to environment env if it was found  # Add UMFPACK to environment env if it was found
513  if env['useumfpack']:  if env['useumfpack']:
# Line 425  if env['useumfpack']: Line 516  if env['useumfpack']:
516  else:  else:
517    conf.Finish()    conf.Finish()
518    
519    ############ Silo (optional) ###################################
520    
521    if env['usesilo']:
522      conf = Configure(clone_env(env))
523      conf.env.AppendUnique(CPPPATH = [env['silo_path']])
524      conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])
525      conf.env.AppendUnique(LIBS = [env['silo_libs']])
526      if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0
527      if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0
528      conf.Finish()
529    
530    # Add the path to Silo to environment env if it was found.
531    # Note that we do not add the libs since they are only needed for the
532    # escriptreader library and tools.
533    if env['usesilo']:
534      env.AppendUnique(CPPPATH = [env['silo_path']])
535      env.AppendUnique(LIBPATH = [env['silo_lib_path']])
536      env.Append(CPPDEFINES = ['HAVE_SILO'])
537    
538  ############ Add the compiler flags ############################  ############ Add the compiler flags ############################
539    
540  # Enable debug by choosing either cc_debug or cc_optim  # Enable debug by choosing either cc_debug or cc_optim
# Line 439  else: Line 549  else:
549  env.Append(CCFLAGS      = env['cc_flags'])  env.Append(CCFLAGS      = env['cc_flags'])
550  env.Append(LIBS         = [env['omp_libs']])  env.Append(LIBS         = [env['omp_libs']])
551    
552    
553    ############ Add some custom builders ##########################
554    
555    py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
556    env.Append(BUILDERS = {'PyCompile' : py_builder});
557    
558    runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
559    env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
560    
561    runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
562    env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
563    
564  ############ MPI (optional) ####################################  ############ MPI (optional) ####################################
565    
566  # Create a modified environment for MPI programs (identical to env if usempi=no)  # Create a modified environment for MPI programs (identical to env if usempi=no)
# Line 452  if env_mpi['usempi']: Line 574  if env_mpi['usempi']:
574    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])
575    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])
576    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs
577      #ensure that our path entries remain at the front
578      conf.env.PrependENVPath('PYTHONPATH', prefix)
579      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
580    
581  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0
582  if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  # if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0
583    
584  # Add MPI to environment env_mpi if it was found  # Add MPI to environment env_mpi if it was found
585  if env_mpi['usempi']:  if env_mpi['usempi']:
# Line 477  if env_mpi['useparmetis']: Line 602  if env_mpi['useparmetis']:
602    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])
603    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])
604    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs
605      #ensure that our path entries remain at the front
606      conf.env.PrependENVPath('PYTHONPATH', prefix)
607      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
608    
609  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0
610  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0
# Line 490  else: Line 618  else:
618    
619  env['useparmetis'] = env_mpi['useparmetis']  env['useparmetis'] = env_mpi['useparmetis']
620    
621    ############ Now we switch on Warnings as errors ###############
622    
623    #this needs to be done after configuration because the scons test files have warnings in them
624    
625    if ((fatalwarning != "") and (env['usewarnings'])):
626      env.Append(CCFLAGS        = fatalwarning)
627      env_mpi.Append(CCFLAGS        = fatalwarning)
628    
629  ############ Summarize our environment #########################  ############ Summarize our environment #########################
630    
631  print ""  print ""
# Line 505  if env['usemkl']: print "  Using MKL" Line 641  if env['usemkl']: print "  Using MKL"
641  else: print "   Not using MKL"  else: print "   Not using MKL"
642  if env['useumfpack']: print "   Using UMFPACK"  if env['useumfpack']: print "   Using UMFPACK"
643  else: print "   Not using UMFPACK"  else: print "   Not using UMFPACK"
644    if env['usesilo']: print "  Using Silo"
645    else: print "   Not using Silo"
646  if env['useopenmp']: print "    Using OpenMP"  if env['useopenmp']: print "    Using OpenMP"
647  else: print "   Not using OpenMP"  else: print "   Not using OpenMP"
648  if env['usempi']: print "   Using MPI"  if env['usempi']: print "   Using MPI"
# Line 516  else: print "  Not using PAPI" Line 654  else: print "  Not using PAPI"
654  if env['usedebug']: print " Compiling for debug"  if env['usedebug']: print " Compiling for debug"
655  else: print "   Not compiling for debug"  else: print "   Not compiling for debug"
656  print " Installing in", prefix  print " Installing in", prefix
657    if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"
658    else: print "   Not treating warnings as errors"
659  print ""  print ""
660    
661  ############ Delete option-dependent files #####################  ############ Delete option-dependent files #####################
662    
663  Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.debug")))
664  Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.mpi")))
665  Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.openmp")))
666  if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))  Execute(Delete(os.path.join(env['libinstall'],"pyversion")))
667    Execute(Delete(os.path.join(env['libinstall'],"buildvars")))
668  ############ Add some custom builders ##########################  if not env['usempi']: Execute(Delete(os.path.join(env['libinstall'],"pythonMPI")))
669    
 py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  
 env.Append(BUILDERS = {'PyCompile' : py_builder});  
670    
671  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  ############ Build the subdirectories ##########################
 env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  
672    
673  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  from grouptest import *
 env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  
674    
675  ############ Build the subdirectories ##########################  TestGroups=[]
676    
677  Export(["env", "env_mpi", "clone_env"])  Export(
678      ["env",
679       "env_mpi",
680       "clone_env",
681       "IS_WINDOWS_PLATFORM",
682       "TestGroups"
683       ]
684      )
685    
686  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
687    env.SConscript(dirs = ['tools/libescriptreader/src'], build_dir='build/$PLATFORM/tools/libescriptreader', duplicate=0)
688  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)
689  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)
690  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)
# Line 551  env.SConscript(dirs = ['pyvisi/py_src'], Line 695  env.SConscript(dirs = ['pyvisi/py_src'],
695  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)
696  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)
697  env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)  env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)
698    env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)
699    
700    
701  ############ Remember what optimizations we used ###############  ############ Remember what optimizations we used ###############
702    
703  remember_list = []  remember_list = []
704    
705  if env['usedebug']:  if env['usedebug']:
706    remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.debug"), None, Touch('$TARGET'))
707    
708  if env['usempi']:  if env['usempi']:
709    remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.mpi"), None, Touch('$TARGET'))
710    
711  if env['omp_optim'] != '':  if env['useopenmp']:
712    remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.openmp"), None, Touch('$TARGET'))
713    
714  env.Alias('remember_options', remember_list)  env.Alias('remember_options', remember_list)
715    
716    
717    ############### Record python interpreter version ##############
718    
719    if not IS_WINDOWS_PLATFORM:
720      versionstring="Python "+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])
721      os.system("echo "+versionstring+" > "+os.path.join(env['libinstall'],"pyversion"))
722    
723    ############## Populate the buildvars file #####################
724    
725    buildvars=open(os.path.join(env['libinstall'],'buildvars'),'w')
726    buildvars.write('python='+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+'\n')
727    
728    # Find the boost version by extracting it from version.hpp
729    boosthpp=open(os.path.join(env['boost_path'],'boost','version.hpp'))
730    boostversion='unknown'
731    try:
732        for line in boosthpp:
733            ver=re.match(r'#define BOOST_VERSION (\d+)',line)
734            if ver:
735                boostversion=ver.group(1)
736    except StopIteration:
737        pass
738    buildvars.write("boost="+boostversion+"\n")
739    buildvars.write("svn_revision="+str(global_revision)+"\n")
740    out="usedebug="
741    if env['usedebug']:
742        out+="y"
743    else:
744        out+="n"
745    out+="\nusempi="
746    if env['usempi']:
747        out+="y"
748    else:
749        out+="n"
750    out+="\nuseopenmp="
751    if env['useopenmp']:
752        out+="y"
753    else:
754        out+="n"
755    buildvars.write(out+"\n")
756    
757    buildvars.close()
758    
759    
760  ############ Targets to build and install libraries ############  ############ Targets to build and install libraries ############
761    
762  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))
# Line 592  build_all_list += ['build_paso'] Line 782  build_all_list += ['build_paso']
782  build_all_list += ['build_escript']  build_all_list += ['build_escript']
783  build_all_list += ['build_finley']  build_all_list += ['build_finley']
784  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']
785  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_finley_wrapper']  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_escript_wrapper']
786    if env['usesilo']:  build_all_list += ['target_escript2silo']
787  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
788    
789  install_all_list = []  install_all_list = []
# Line 605  install_all_list += ['target_install_pyv Line 796  install_all_list += ['target_install_pyv
796  install_all_list += ['target_install_modellib_py']  install_all_list += ['target_install_modellib_py']
797  install_all_list += ['target_install_pycad_py']  install_all_list += ['target_install_pycad_py']
798  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']
799  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_finley_wrapper']  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_escript_wrapper']
800    if env['usesilo']:  install_all_list += ['target_install_escript2silo']
801  install_all_list += ['remember_options']  install_all_list += ['remember_options']
802  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
803    
# Line 618  env.Alias('build_cppunittest', ['target_ Line 810  env.Alias('build_cppunittest', ['target_
810  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])
811  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])
812  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])
813    env.Alias('build_full',['install_all','build_tests','build_py_tests'])
814    
815  ############ Targets to build the documentation ################  ############ Targets to build the documentation ################
816    
817  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html','install_pdf'])
818    
819    if not IS_WINDOWS_PLATFORM:
820       try:
821        utest=open("utest.sh","w")
822        build_platform=os.name      #Sometimes Mac python says it is posix
823        if (build_platform=='posix') and platform.system()=="Darwin":
824            build_platform='darwin'
825        utest.write(GroupTest.makeHeader(build_platform))
826        for tests in TestGroups:
827            utest.write(tests.makeString())
828        utest.close()
829        os.chmod("utest.sh",stat.S_IRWXU|stat.S_IRGRP|stat.S_IXGRP|stat.S_IROTH|stat.S_IXOTH)
830        print "utest.sh written"
831       except IOError:
832        print "Error attempting to write unittests file."
833        sys.exit(1)
834    

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