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revision 2294 by jfenwick, Mon Mar 2 03:44:27 2009 UTC revision 4542 by jfenwick, Thu Nov 28 01:33:22 2013 UTC
# Line 1  Line 1 
1    ##############################################################################
 ########################################################  
2  #  #
3  # Copyright (c) 2003-2008 by University of Queensland  # Copyright (c) 2003-2013 by University of Queensland
4  # Earth Systems Science Computational Center (ESSCC)  # http://www.uq.edu.au
 # http://www.uq.edu.au/esscc  
5  #  #
6  # Primary Business: Queensland, Australia  # Primary Business: Queensland, Australia
7  # Licensed under the Open Software License version 3.0  # Licensed under the Open Software License version 3.0
8  # http://www.opensource.org/licenses/osl-3.0.php  # http://www.opensource.org/licenses/osl-3.0.php
9  #  #
10  ########################################################  # Development until 2012 by Earth Systems Science Computational Center (ESSCC)
11    # Development since 2012 by School of Earth Sciences
12    #
13  EnsureSConsVersion(0,96,91)  ##############################################################################
 EnsurePythonVersion(2,3)  
   
 import sys, os, re, socket, platform  
   
 # Add our extensions  
 if os.path.isdir('scons'): sys.path.append('scons')  
 import scons_extensions  
14    
15  # Use /usr/lib64 if available, else /usr/lib  EnsureSConsVersion(0,98,1)
16  usr_lib = '/usr/lib'  EnsurePythonVersion(2,5)
 if os.path.isfile('/usr/lib64/libc.so'): usr_lib = '/usr/lib64'  
17    
18  # The string python2.4 or python2.5  import atexit, sys, os, platform, re
19  python_version = 'python%s.%s' % (sys.version_info[0], sys.version_info[1])  from distutils import sysconfig
20    from dependencies import *
21    from site_init import *
22    
23    # Version number to check for in options file. Increment when new features are
24    # added or existing options changed.
25    REQUIRED_OPTS_VERSION=201
26    
27  # MS Windows support, many thanks to PH  # MS Windows support, many thanks to PH
28  IS_WINDOWS_PLATFORM = (os.name== "nt")  IS_WINDOWS = (os.name == 'nt')
29    
30  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)  ########################## Determine options file ############################
31    # 1. command line
32    # 2. scons/<hostname>_options.py
33    # 3. name as part of a cluster
34    options_file=ARGUMENTS.get('options_file', None)
35    if not options_file:
36        ext_dir = os.path.join(os.getcwd(), 'scons')
37        hostname = platform.node().split('.')[0]
38        for name in hostname, effectiveName(hostname):
39            mangledhostname = re.sub('[^0-9a-zA-Z]', '_', hostname)
40            options_file = os.path.join(ext_dir, mangledhostname+'_options.py')
41            if os.path.isfile(options_file): break
42    
 # Read configuration options from file scons/<hostname>_options.py  
 hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  
 tmp = os.path.join("scons",hostname+"_options.py")  
 options_file = ARGUMENTS.get('options_file', tmp)  
43  if not os.path.isfile(options_file):  if not os.path.isfile(options_file):
44    options_file = False      print("\nWARNING:\nOptions file %s" % options_file)
45    print "Options file not found (expected '%s')" % tmp      print("not found! Default options will be used which is most likely suboptimal.")
46  else:      print("We recommend that you copy one of the TEMPLATE files in the scons/")
47    print "Options file is", options_file      print("subdirectory and customize it to your needs.\n")
48        options_file = None
49  # Load options file and command-line arguments  
50  opts = Options(options_file, ARGUMENTS)  ############################### Build options ################################
51    
52  ############ Load build options ################################  default_prefix='/usr'
53    mpi_flavours=('no', 'none', 'MPT', 'MPICH', 'MPICH2', 'OPENMPI', 'INTELMPI')
54  opts.AddOptions(  lapack_flavours=('none', 'clapack', 'mkl')
55  # Where to install esys stuff  
56    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),  vars = Variables(options_file, ARGUMENTS)
57    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),  vars.AddVariables(
58    ('bininstall', 'where the esys binaries will be installed',            os.path.join(prefix,'bin')),    PathVariable('options_file', 'Path to options file', options_file, PathVariable.PathIsFile),
59    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),    PathVariable('prefix', 'Installation prefix', Dir('#.').abspath, PathVariable.PathIsDirCreate),
60    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),    PathVariable('build_dir', 'Top-level build directory', Dir('#/build').abspath, PathVariable.PathIsDirCreate),
61  # Compilation options    BoolVariable('verbose', 'Output full compile/link lines', False),
62    BoolOption('dodebug', 'For backwards compatibility', 'no'),  # Compiler/Linker options
63    BoolOption('usedebug', 'Do you want a debug build?', 'no'),    ('cxx', 'Path to C++ compiler', 'default'),
64    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),    ('cc_flags', 'Base C++ compiler flags', 'default'),
65    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),    ('cc_optim', 'Additional C++ flags for a non-debug build', 'default'),
66    ('win_cc_name', 'windows C compiler name if needed', 'msvc'),    ('cc_debug', 'Additional C++ flags for a debug build', 'default'),
67    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below    ('cxx_extra', 'Extra C++ compiler flags', ''),
   ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),  
   ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),  
   ('cc_debug', 'C compiler debug flags to use', '-DEFAULT_3'),  
   ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),  
   ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),  
   ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),  
   ('cc_extra', 'Extra C/C++ flags', ''),  
68    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
69    ('sys_libs', 'System libraries to link with', []),    BoolVariable('werror','Treat compiler warnings as errors', True),
70    ('ar_flags', 'Static library archiver flags to use', ''),    BoolVariable('debug', 'Compile with debug flags', False),
71    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'no'),    BoolVariable('openmp', 'Compile parallel version using OpenMP', False),
72    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),    ('omp_flags', 'OpenMP compiler flags', 'default'),
73    BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),    ('omp_ldflags', 'OpenMP linker flags', 'default'),
74    ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),  # Mandatory libraries
75  # Python    ('boost_prefix', 'Prefix/Paths of boost installation', default_prefix),
76    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),    ('boost_libs', 'Boost libraries to link with', ['boost_python-mt']),
77    ('python_lib_path', 'Path to Python libs', usr_lib),  # Mandatory for tests
78    ('python_libs', 'Python libraries to link with', [python_version]),    ('cppunit_prefix', 'Prefix/Paths of CppUnit installation', default_prefix),
79    ('python_cmd', 'Python command', 'python'),    ('cppunit_libs', 'CppUnit libraries to link with', ['cppunit']),
80  # Boost  # Optional libraries and options
81    ('boost_path', 'Path to Boost includes', '/usr/include'),    EnumVariable('mpi', 'Compile parallel version using MPI flavour', 'none', allowed_values=mpi_flavours),
82    ('boost_lib_path', 'Path to Boost libs', usr_lib),    ('mpi_prefix', 'Prefix/Paths of MPI installation', default_prefix),
83    ('boost_libs', 'Boost libraries to link with', ['boost_python']),    ('mpi_libs', 'MPI shared libraries to link with', ['mpi']),
84  # NetCDF    BoolVariable('netcdf', 'Enable netCDF file support', False),
85    BoolOption('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),    ('netcdf_prefix', 'Prefix/Paths of netCDF installation', default_prefix),
86    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),    ('netcdf_libs', 'netCDF libraries to link with', ['netcdf_c++', 'netcdf']),
87    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),    BoolVariable('parmetis', 'Enable ParMETIS (requires MPI)', False),
88    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),    ('parmetis_prefix', 'Prefix/Paths of ParMETIS installation', default_prefix),
89  # MPI    ('parmetis_libs', 'ParMETIS libraries to link with', ['parmetis', 'metis']),
90    BoolOption('useMPI', 'For backwards compatibility', 'no'),    BoolVariable('papi', 'Enable PAPI', False),
91    BoolOption('usempi', 'Compile parallel version using MPI', 'no'),    ('papi_prefix', 'Prefix/Paths to PAPI installation', default_prefix),
   ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),  
   ('mpi_path', 'Path to MPI includes', '/usr/include'),  
   ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),  
   ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),  
   ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),  
 # ParMETIS  
   BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),  
   ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),  
   ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),  
   ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),  
 # PAPI  
   BoolOption('usepapi', 'switch on/off the usage of PAPI', 'no'),  
   ('papi_path', 'Path to PAPI includes', '/usr/include'),  
   ('papi_lib_path', 'Path to PAPI libs', usr_lib),  
92    ('papi_libs', 'PAPI libraries to link with', ['papi']),    ('papi_libs', 'PAPI libraries to link with', ['papi']),
93    BoolOption('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),    BoolVariable('papi_instrument_solver', 'Use PAPI to instrument each iteration of the solver', False),
94  # MKL    BoolVariable('mkl', 'Enable the Math Kernel Library', False),
95    BoolOption('usemkl', 'switch on/off the usage of MKL', 'no'),    ('mkl_prefix', 'Prefix/Paths to MKL installation', default_prefix),
96    ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver','mkl_em64t','guide','pthread']),
97    ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),    BoolVariable('umfpack', 'Enable UMFPACK', False),
98    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),    ('umfpack_prefix', 'Prefix/Paths to UMFPACK installation', default_prefix),
99  # UMFPACK    ('umfpack_libs', 'UMFPACK libraries to link with', ['umfpack']),
100    BoolOption('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),    BoolVariable('boomeramg', 'Enable BoomerAMG', False),
101    ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),    ('boomeramg_prefix', 'Prefix/Paths to BoomerAMG installation', default_prefix),
102    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('boomeramg_libs', 'BoomerAMG libraries to link with', ['boomeramg']),
103    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    EnumVariable('lapack', 'Set LAPACK flavour', 'none', allowed_values=lapack_flavours),
104    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('lapack_prefix', 'Prefix/Paths to LAPACK installation', default_prefix),
105  # Silo    ('lapack_libs', 'LAPACK libraries to link with', []),
106    BoolOption('usesilo', 'switch on/off the usage of Silo', 'yes'),    BoolVariable('silo', 'Enable the Silo file format in weipa', False),
107    ('silo_path', 'Path to Silo includes', '/usr/include'),    ('silo_prefix', 'Prefix/Paths to Silo installation', default_prefix),
   ('silo_lib_path', 'Path to Silo libs', usr_lib),  
108    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
109  # AMD (used by UMFPACK)    BoolVariable('visit', 'Enable the VisIt simulation interface', False),
110    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    ('visit_prefix', 'Prefix/Paths to VisIt installation', default_prefix),
111    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('visit_libs', 'VisIt libraries to link with', ['simV2']),
112    ('amd_libs', 'AMD libraries to link with', ['amd']),    BoolVariable('vsl_random', 'Use VSL from intel for random data', False),
113  # BLAS (used by UMFPACK)  # Advanced settings
114    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),    #dudley_assemble_flags = -funroll-loops      to actually do something
115    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    ('dudley_assemble_flags', 'compiler flags for some dudley optimisations', ''),
116    ('blas_libs', 'BLAS libraries to link with', ['blas']),    # To enable passing function pointers through python
117  # An option for specifying the compiler tools set (see windows branch).    BoolVariable('iknowwhatimdoing', 'Allow non-standard C', False),
118    ('tools_names', 'allow control over the tools in the env setup', ['intelc']),    # An option for specifying the compiler tools (see windows branch)
119  # finer control over library building, intel aggressive global optimisation    ('tools_names', 'Compiler tools to use', ['default']),
120  # works with dynamic libraries on windows.    ('env_export', 'Environment variables to be passed to tools',[]),
121    ('share_esysUtils', 'control static or dynamic esysUtils lib', False),    EnumVariable('forcelazy', 'For testing use only - set the default value for autolazy', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
122    ('share_paso', 'control static or dynamic paso lib', False)    EnumVariable('forcecollres', 'For testing use only - set the default value for force resolving collective ops', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
123      # finer control over library building, intel aggressive global optimisation
124      # works with dynamic libraries on windows.
125      ('build_shared', 'Build dynamic libraries only', False),
126      ('sys_libs', 'Extra libraries to link with', []),
127      ('escript_opts_version', 'Version of options file (do not specify on command line)'),
128      ('SVN_VERSION', 'Do not use from options file', -2),
129      ('pythoncmd', 'which python to compile with','python'),
130      ('usepython3', 'Is this a python3 build? (experimental)', False),
131      ('pythonlibname', 'Name of the python library to link. (This is found automatically for python2.X.)', ''),
132      ('pythonlibpath', 'Path to the python library. (You should not need to set this unless your python has moved)',''),
133      ('pythonincpath','Path to python include files. (You should not need to set this unless your python has moved',''),
134      BoolVariable('BADPYTHONMACROS','Extra \#include to get around a python bug.', True),
135  )  )
136    
137  ############ Specify which compilers to use ####################  ##################### Create environment and help text #######################
138    
139  # intelc uses regular expressions improperly and emits a warning about  # Intel's compiler uses regular expressions improperly and emits a warning
140  # failing to find the compilers.  This warning can be safely ignored.  # about failing to find the compilers. This warning can be safely ignored.
141    
142  if IS_WINDOWS_PLATFORM:  # PATH is needed so the compiler, linker and tools are found if they are not
143        env = Environment(options = opts)  # in default locations.
144        env = Environment(tools = ['default'] + env['tools_names'],  env = Environment(tools = ['default'], options = vars,
145                          options = opts)                    ENV = {'PATH': os.environ['PATH']})
146    
147    # set the vars for clang
148    def mkclang(env):
149        env['CXX']='clang++'
150    
151    if env['tools_names'] != 'default':
152        zz=env['tools_names']
153        if 'clang' in zz:
154            zz.remove('clang')
155            zz.insert(0, mkclang)
156        env = Environment(tools = ['default'] + env['tools_names'], options = vars,
157                          ENV = {'PATH' : os.environ['PATH']})
158    
159    if options_file:
160        opts_valid=False
161        if 'escript_opts_version' in env.Dictionary() and \
162            int(env['escript_opts_version']) >= REQUIRED_OPTS_VERSION:
163                opts_valid=True
164        if opts_valid:
165            print("Using options in %s." % options_file)
166        else:
167            print("\nOptions file %s" % options_file)
168            print("is outdated! Please update the file by examining one of the TEMPLATE")
169            print("files in the scons/ subdirectory and setting escript_opts_version to %d.\n"%REQUIRED_OPTS_VERSION)
170            Exit(1)
171    
172    # Generate help text (scons -h)
173    Help(vars.GenerateHelpText(env))
174    
175    # Check for superfluous options
176    if len(vars.UnknownVariables())>0:
177        for k in vars.UnknownVariables():
178            print("Unknown option '%s'" % k)
179        Exit(1)
180    
181    # create dictionary which will be populated with info for buildvars file
182    env['buildvars']={}
183    # create list which will be populated with warnings if there are any
184    env['warnings']=[]
185    
186    #################### Make sure install directories exist #####################
187    
188    env['BUILD_DIR']=Dir(env['build_dir']).abspath
189    prefix=Dir(env['prefix']).abspath
190    env['buildvars']['prefix']=prefix
191    env['incinstall'] = os.path.join(prefix, 'include')
192    env['bininstall'] = os.path.join(prefix, 'bin')
193    env['libinstall'] = os.path.join(prefix, 'lib')
194    env['pyinstall']  = os.path.join(prefix, 'esys')
195    if not os.path.isdir(env['bininstall']):
196        os.makedirs(env['bininstall'])
197    if not os.path.isdir(env['libinstall']):
198        os.makedirs(env['libinstall'])
199    if not os.path.isdir(env['pyinstall']):
200        os.makedirs(env['pyinstall'])
201    
202    env.Append(CPPPATH = [env['incinstall']])
203    env.Append(LIBPATH = [env['libinstall']])
204    
205    ################# Fill in compiler options if not set above ##################
206    
207    if env['cxx'] != 'default': env['CXX']=env['cxx']
208    
209    # version >=9 of intel C++ compiler requires use of icpc to link in C++
210    # runtimes (icc does not)
211    if not IS_WINDOWS and os.uname()[4]=='ia64' and env['CXX']=='icpc':
212        env['LINK'] = env['CXX']
213    
214    # default compiler/linker options
215    cc_flags = ''
216    cc_optim = ''
217    cc_debug = ''
218    omp_flags = ''
219    omp_ldflags = ''
220    fatalwarning = '' # switch to turn warnings into errors
221    sysheaderopt = '' # how to indicate that a header is a system header
222    
223    # env['CC'] might be a full path
224    cc_name=os.path.basename(env['CXX'])
225    
226    if cc_name == 'icpc':
227        # Intel compiler
228        # #1875: offsetof applied to non-POD types is nonstandard (in boost)
229        # removed -std=c99 because icpc doesn't like it and we aren't using c anymore
230        cc_flags    = "-fPIC -w2 -wd1875 -Wno-unknown-pragmas -DBLOCKTIMER -DCORE_ID1"
231        cc_optim    = "-O3 -ftz -fno-alias -ipo -xHost"
232        cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
233        omp_flags   = "-openmp"
234        omp_ldflags = "-openmp -openmp_report=1"
235        fatalwarning = "-Werror"
236    elif cc_name[:3] == 'g++':
237        # GNU C on any system
238        # note that -ffast-math is not used because it breaks isnan(),
239        # see mantis #691
240        cc_flags     = "-pedantic -Wall -fPIC -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"
241        cc_optim     = "-O3"
242        cc_debug     = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
243        omp_flags    = "-fopenmp"
244        omp_ldflags  = "-fopenmp"
245        fatalwarning = "-Werror"
246        sysheaderopt = "-isystem"
247    elif cc_name == 'cl':
248        # Microsoft Visual C on Windows
249        cc_flags     = "/EHsc /MD /GR /wd4068 /D_USE_MATH_DEFINES /DDLL_NETCDF"
250        cc_optim     = "/O2 /Op /W3"
251        cc_debug     = "/Od /RTCcsu /ZI /DBOUNDS_CHECK"
252        fatalwarning = "/WX"
253    elif cc_name == 'icl':
254        # Intel C on Windows
255        cc_flags     = '/EHsc /GR /MD'
256        cc_optim     = '/fast /Oi /W3 /Qssp /Qinline-factor- /Qinline-min-size=0 /Qunroll'
257        cc_debug     = '/Od /RTCcsu /Zi /Y- /debug:all /Qtrapuv'
258        omp_flags    = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
259        omp_ldflags  = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
260    
261    env['sysheaderopt']=sysheaderopt
262    
263    # set defaults if not otherwise specified
264    if env['cc_flags']    == 'default': env['cc_flags'] = cc_flags
265    if env['cc_optim']    == 'default': env['cc_optim'] = cc_optim
266    if env['cc_debug']    == 'default': env['cc_debug'] = cc_debug
267    if env['omp_flags']   == 'default': env['omp_flags'] = omp_flags
268    if env['omp_ldflags'] == 'default': env['omp_ldflags'] = omp_ldflags
269    if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
270    if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])
271    
272    if env['BADPYTHONMACROS']: env.Append(CXXFLAGS = ' -DBADPYTHONMACROS')
273    
274    if env['usepython3']:
275        env.Append(CPPDEFINES=['ESPYTHON3'])
276    
277    # set up the autolazy values
278    if env['forcelazy'] == 'on':
279        env.Append(CPPDEFINES=['FAUTOLAZYON'])
280    elif env['forcelazy'] == 'off':
281        env.Append(CPPDEFINES=['FAUTOLAZYOFF'])
282    
283    # set up the collective resolve values
284    if env['forcecollres'] == 'on':
285        env.Append(CPPDEFINES=['FRESCOLLECTON'])
286    elif env['forcecollres'] == 'off':
287        env.Append(CPPDEFINES=['FRESCOLLECTOFF'])
288    
289    # allow non-standard C if requested
290    if env['iknowwhatimdoing']:
291        env.Append(CPPDEFINES=['IKNOWWHATIMDOING'])
292    
293    # Disable OpenMP if no flags provided
294    if env['openmp'] and env['omp_flags'] == '':
295       env['warnings'].append("OpenMP requested but no flags provided - disabling OpenMP!")
296       env['openmp'] = False
297    
298    if env['openmp']:
299        env.Append(CCFLAGS = env['omp_flags'])
300        if env['omp_ldflags'] != '': env.Append(LINKFLAGS = env['omp_ldflags'])
301    else:
302        env['omp_flags']=''
303        env['omp_ldflags']=''
304    
305    env['buildvars']['openmp']=int(env['openmp'])
306    
307    # add debug/non-debug compiler flags
308    env['buildvars']['debug']=int(env['debug'])
309    if env['debug']:
310        env.Append(CCFLAGS = env['cc_debug'])
311    else:
312        env.Append(CCFLAGS = env['cc_optim'])
313    
314    # always add cc_flags
315    env.Append(CCFLAGS = env['cc_flags'])
316    
317    # add system libraries
318    env.AppendUnique(LIBS = env['sys_libs'])
319    
320    # determine svn revision
321    global_revision=ARGUMENTS.get('SVN_VERSION', None)
322    if global_revision:
323        global_revision = re.sub(':.*', '', global_revision)
324        global_revision = re.sub('[^0-9]', '', global_revision)
325        if global_revision == '': global_revision='-2'
326  else:  else:
327     if socket.gethostname().split('.')[0] == 'service0':    # Get the global Subversion revision number for the getVersion() method
328        env = Environment(tools = ['default', 'intelc'], options = opts)    try:
329     elif os.uname()[4]=='ia64':      global_revision = os.popen('svnversion -n .').read()
330        env = Environment(tools = ['default', 'intelc'], options = opts)      global_revision = re.sub(':.*', '', global_revision)
331        if env['CXX'] == 'icpc':      global_revision = re.sub('[^0-9]', '', global_revision)
332           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)      if global_revision == '': global_revision='-2'
333     else:    except:
334        env = Environment(tools = ['default'], options = opts)      global_revision = '-1'
335  Help(opts.GenerateHelpText(env))  env['svn_revision']=global_revision
336    env['buildvars']['svn_revision']=global_revision
337  ############ Fill in compiler options if not set above #########  env.Append(CPPDEFINES=['SVN_VERSION='+global_revision])
338    
339  # Backwards compatibility: allow dodebug=yes and useMPI=yes  if IS_WINDOWS:
340  if env['dodebug']: env['usedebug'] = 1      if not env['build_shared']:
341  if env['useMPI']: env['usempi'] = 1          env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
342            env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
343  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  
344  # For both C and C++ you get: cc_flags and either the optim flags or debug flags  # VSL random numbers
345    env['buildvars']['vsl_random']=int(env['vsl_random'])
346  sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.  if env['vsl_random']:
347        env.Append(CPPDEFINES = ['MKLRANDOM'])
348  if env["CC"] == "icc":  
349    # Intel compilers  env['IS_WINDOWS']=IS_WINDOWS
350    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"  
351    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"  ###################### Copy required environment vars ########################
352    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  
353    omp_optim     = "-openmp -openmp_report0"  # Windows doesn't use LD_LIBRARY_PATH but PATH instead
354    omp_debug     = "-openmp -openmp_report0"  if IS_WINDOWS:
355    omp_libs      = ['guide', 'pthread']      LD_LIBRARY_PATH_KEY='PATH'
356    pedantic      = ""      env['ENV']['LD_LIBRARY_PATH']=''
357    fatalwarning      = ""        # Switch to turn warnings into errors  else:
358    sysheaderopt      = ""      LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'
359  elif env["CC"] == "gcc":  
360    # GNU C on any system  env['LD_LIBRARY_PATH_KEY']=LD_LIBRARY_PATH_KEY
361    cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"  
362  #the long long warning occurs on the Mac  # the following env variables are exported for the unit tests
363    cc_optim      = "-O3"  
364    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  for key in 'OMP_NUM_THREADS', 'ESCRIPT_NUM_PROCS', 'ESCRIPT_NUM_NODES':
365    omp_optim     = ""      try:
366    omp_debug     = ""          env['ENV'][key] = os.environ[key]
367    omp_libs      = []      except KeyError:
368    pedantic      = "-pedantic-errors -Wno-long-long"          env['ENV'][key] = 1
369    fatalwarning      = "-Werror"  
370    sysheaderopt      = "-isystem "  env_export=env['env_export']
371  elif env["CC"] == "cl":  env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME','KMP_MONITOR_STACKSIZE','TMPDIR','TEMP','TMP'])
372    # Microsoft Visual C on Windows  
373    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"  for key in set(env_export):
374    cc_optim      = "/O2 /Op /MT /W3"      try:
375    cc_debug      = "/Od /RTC1 /MTd /ZI -DBOUNDS_CHECK"          env['ENV'][key] = os.environ[key]
376    omp_optim     = ""      except KeyError:
377    omp_debug     = ""          pass
   omp_libs      = []  
   pedantic      = ""  
   fatalwarning      = ""  
   sysheaderopt      = ""  
 elif env["CC"] == "icl":  
   # intel C on Windows, see windows_intelc_options.py for a start  
   pedantic      = ""  
   fatalwarning      = ""  
   sysheaderopt      = ""  
   
   
 # If not specified in hostname_options.py then set them here  
 if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  
 if env["cc_optim"]  == "-DEFAULT_2": env['cc_optim'] = cc_optim  
 if env["cc_debug"]  == "-DEFAULT_3": env['cc_debug'] = cc_debug  
 if env["omp_optim"] == "-DEFAULT_4": env['omp_optim'] = omp_optim  
 if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  
 if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  
   
 #set up the autolazy values  
 if env['forcelazy']    != "leave_alone":  
   if env['forcelazy'] == 'on':  
     env.Append(CPPDEFINES='FAUTOLAZYON')  
   else:  
      if env['forcelazy'] == 'off':  
     env.Append(CPPDEFINES='FAUTOLAZYOFF')  
   
 # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  
 if not env["useopenmp"]:  
   env['omp_optim'] = ""  
   env['omp_debug'] = ""  
   env['omp_libs'] = []  
   
 if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0  
   
 ############ Copy environment variables into scons env #########  
   
 try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']  
 except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1  
   
 try: env['ENV']['PATH'] = os.environ['PATH']  
 except KeyError: pass  
   
 try: env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']  
 except KeyError: pass  
   
 try: env['ENV']['C_INCLUDE_PATH'] = os.environ['C_INCLUDE_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['LD_LIBRARY_PATH'] = os.environ['LD_LIBRARY_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['DISPLAY'] = os.environ['DISPLAY']  
 except KeyError: pass  
   
 try: env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']  
 except KeyError: pass  
   
 try: env['ENV']['HOME'] = os.environ['HOME']  
 except KeyError: pass  
   
 # Configure for test suite  
 env.PrependENVPath('PYTHONPATH', prefix)  
 env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  
   
 env['ENV']['ESCRIPT_ROOT'] = prefix  
   
 ############ Set up paths for Configure() ######################  
   
 # Make a copy of an environment  
 # Use env.Clone if available, but fall back on env.Copy for older version of scons  
 def clone_env(env):  
   if 'Clone' in dir(env): return env.Clone()    # scons-0.98  
   else:                   return env.Copy() # scons-0.96  
   
 # Add cc option -I<Escript>/trunk/include  
 env.Append(CPPPATH      = [Dir('include')])  
   
 # Add cc option -L<Escript>/trunk/lib  
 env.Append(LIBPATH      = [Dir(env['libinstall'])])  
   
 if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])  
 if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])  
   
 if env['usepedantic']: env.Append(CCFLAGS = pedantic)  
   
 # MS Windows  
 if IS_WINDOWS_PLATFORM:  
   env.PrependENVPath('PATH',    [env['boost_lib_path']])  
   env.PrependENVPath('PATH',    [env['libinstall']])  
   if not env['share_esysUtils'] :  
     env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])  
   if not env['share_paso'] :  
     env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])  
   
   if env['usenetcdf']:  
     env.PrependENVPath('PATH',  [env['netCDF_lib_path']])  
   
 env.Append(ARFLAGS = env['ar_flags'])  
378    
 # Get the global Subversion revision number for getVersion() method  
379  try:  try:
380     global_revision = os.popen("svnversion -n .").read()      env.PrependENVPath(LD_LIBRARY_PATH_KEY, os.environ[LD_LIBRARY_PATH_KEY])
381     global_revision = re.sub(":.*", "", global_revision)  except KeyError:
382     global_revision = re.sub("[^0-9]", "", global_revision)      pass
383  except:  
384     global_revision="-1"  # these shouldn't be needed
385  if global_revision == "": global_revision="-2"  #for key in 'C_INCLUDE_PATH','CPLUS_INCLUDE_PATH','LIBRARY_PATH':
386  env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])  #    try:
387    #        env['ENV'][key] = os.environ[key]
388  ############ numarray (required) ###############################  #    except KeyError:
389    #        pass
390    
391  try:  try:
392    from numarray import identity      env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
393  except ImportError:  except KeyError:
394    print "Cannot import numarray, you need to set your PYTHONPATH"      pass
   sys.exit(1)  
   
 ############ C compiler (required) #############################  
   
 # Create a Configure() environment for checking existence of required libraries and headers  
 conf = Configure(clone_env(env))  
   
 # Test that the compiler is working  
 if not conf.CheckFunc('printf'):  
    print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])  
    sys.exit(1)  
   
 if conf.CheckFunc('gethostname'):  
   conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])  
   
 ############ python libraries (required) #######################  
   
   
 if not sysheaderopt =="":  
   conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])  
 else:  
   conf.env.AppendUnique(CPPPATH     = [env['python_path']])  
   
 conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  
 conf.env.AppendUnique(LIBS      = [env['python_libs']])  
   
 conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs  
   
 if not conf.CheckCHeader('Python.h'):  
   print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])  
   sys.exit(1)  
 if not conf.CheckFunc('Py_Exit'):  
   print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])  
   sys.exit(1)  
   
 ############ boost (required) ##################################  
   
 if not sysheaderopt =="":  
   conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))  
 else:  
   conf.env.AppendUnique(CPPPATH     = [env['boost_path']])  
395    
396  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  ######################## Add some custom builders ############################
 conf.env.AppendUnique(LIBS      = [env['boost_libs']])  
397    
398  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs  if env['pythoncmd']=='python':
399        py_builder = Builder(action = build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
 if not conf.CheckCXXHeader('boost/python.hpp'):  
   print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])  
   sys.exit(1)  
   
 if not conf.CheckFunc('PyObject_SetAttr'):  
   print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])  
   sys.exit(1)  
   
 # Commit changes to environment  
 env = conf.Finish()  
   
 ############ VTK (optional) ####################################  
   
 if env['usevtk']:  
   try:  
     import vtk  
     env['usevtk'] = 1  
   except ImportError:  
     env['usevtk'] = 0  
   
 # Add VTK to environment env if it was found  
 if env['usevtk']:  
   env.Append(CPPDEFINES = ['USE_VTK'])  
   
 ############ NetCDF (optional) #################################  
   
 conf = Configure(clone_env(env))  
   
 if env['usenetcdf']:  
   conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])  
   conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs  
   
 if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  
 if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  
   
 # Add NetCDF to environment env if it was found  
 if env['usenetcdf']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['USE_NETCDF'])  
 else:  
   conf.Finish()  
   
 ############ PAPI (optional) ###################################  
   
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env))  
   
 if env['usepapi']:  
   conf.env.AppendUnique(CPPPATH = [env['papi_path']])  
   conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['papi_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs  
   
 if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  
 if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  
   
 # Add PAPI to environment env if it was found  
 if env['usepapi']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['BLOCKPAPI'])  
 else:  
   conf.Finish()  
   
 ############ MKL (optional) ####################################  
   
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env))  
   
 if env['usemkl']:  
   conf.env.AppendUnique(CPPPATH = [env['mkl_path']])  
   conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['mkl_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs  
   
 if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  
 if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0  
   
 # Add MKL to environment env if it was found  
 if env['usemkl']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['MKL'])  
 else:  
   conf.Finish()  
   
 ############ UMFPACK (optional) ################################  
   
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env))  
   
 if env['useumfpack']:  
   conf.env.AppendUnique(CPPPATH = [env['ufc_path']])  
   conf.env.AppendUnique(CPPPATH = [env['umf_path']])  
   conf.env.AppendUnique(LIBPATH = [env['umf_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['umf_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['amd_path']])  
   conf.env.AppendUnique(LIBPATH = [env['amd_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['amd_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['blas_path']])  
   conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['blas_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs  
   
 if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
 # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?  
   
 # Add UMFPACK to environment env if it was found  
 if env['useumfpack']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['UMFPACK'])  
 else:  
   conf.Finish()  
   
 ############ Silo (optional) ###################################  
   
 if env['usesilo']:  
   conf = Configure(clone_env(env))  
   conf.env.AppendUnique(CPPPATH = [env['silo_path']])  
   conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])  
   conf.env.AppendUnique(LIBS = [env['silo_libs']])  
   if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0  
   if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0  
   conf.Finish()  
   
 # Add the path to Silo to environment env if it was found.  
 # Note that we do not add the libs since they are only needed for the  
 # escriptreader library and tools.  
 if env['usesilo']:  
   env.AppendUnique(CPPPATH = [env['silo_path']])  
   env.AppendUnique(LIBPATH = [env['silo_lib_path']])  
   env.Append(CPPDEFINES = ['HAVE_SILO'])  
   
 ############ Add the compiler flags ############################  
   
 # Enable debug by choosing either cc_debug or cc_optim  
 if env['usedebug']:  
   env.Append(CCFLAGS        = env['cc_debug'])  
   env.Append(CCFLAGS        = env['omp_debug'])  
400  else:  else:
401    env.Append(CCFLAGS        = env['cc_optim'])      py_builder = Builder(action = env['pythoncmd']+" scripts/py_comp.py $SOURCE $TARGET", suffix = '.pyc', src_suffix = '.py', single_source=True)
   env.Append(CCFLAGS        = env['omp_optim'])  
   
 # Always use cc_flags  
 env.Append(CCFLAGS      = env['cc_flags'])  
 env.Append(LIBS         = [env['omp_libs']])  
   
   
 ############ Add some custom builders ##########################  
   
 py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  
402  env.Append(BUILDERS = {'PyCompile' : py_builder});  env.Append(BUILDERS = {'PyCompile' : py_builder});
403    
404  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  runUnitTest_builder = Builder(action = runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
405  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
406    
407  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  runPyUnitTest_builder = Builder(action = runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
408  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
409    
410  ############ MPI (optional) ####################################  epstopdfbuilder = Builder(action = eps2pdf, suffix='.pdf', src_suffix='.eps', single_source=True)
411    env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
412    
413  # Create a modified environment for MPI programs (identical to env if usempi=no)  ############################ Dependency checks ###############################
 env_mpi = clone_env(env)  
414    
415  # Start a new configure environment that reflects what we've already found  ######## Compiler
416  conf = Configure(clone_env(env_mpi))  env=checkCompiler(env)
417    
418  if env_mpi['usempi']:  ######## Python headers & library (required)
419    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])  env=checkPython(env)
   conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs  
   
 if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  
 if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  
   
 # Add MPI to environment env_mpi if it was found  
 if env_mpi['usempi']:  
   env_mpi = conf.Finish()  
   env_mpi.Append(CPPDEFINES = ['PASO_MPI', 'MPI_NO_CPPBIND', env_mpi['MPICH_IGNORE_CXX_SEEK']])  
 else:  
   conf.Finish()  
420    
421  env['usempi'] = env_mpi['usempi']  ######## boost & boost-python (required)
422    env=checkBoost(env)
423    
424  ############ ParMETIS (optional) ###############################  ######## numpy (required) and numpy headers (optional)
425    env=checkNumpy(env)
426    
427  # Start a new configure environment that reflects what we've already found  ######## CppUnit (required for tests)
428  conf = Configure(clone_env(env_mpi))  env=checkCppUnit(env)
429    
430  if not env_mpi['usempi']: env_mpi['useparmetis'] = 0  ######## optional python modules (sympy, pyproj)
431    env=checkOptionalModules(env)
432    
433  if env_mpi['useparmetis']:  ######## optional dependencies (netCDF, PAPI, MKL, UMFPACK, Lapack, Silo, ...)
434    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])  env=checkOptionalLibraries(env)
   conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])  
   conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs  
435    
436  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  ######## PDFLaTeX (for documentation)
437  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  env=checkPDFLatex(env)
438    
439  # Add ParMETIS to environment env_mpi if it was found  # keep some of our install paths first in the list for the unit tests
440  if env_mpi['useparmetis']:  env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
441    env_mpi = conf.Finish()  env.PrependENVPath('PYTHONPATH', prefix)
442    env_mpi.Append(CPPDEFINES = ['USE_PARMETIS'])  env['ENV']['ESCRIPT_ROOT'] = prefix
443  else:  
444    conf.Finish()  if not env['verbose']:
445        env['CXXCOMSTR'] = "Compiling $TARGET"
446        env['SHCXXCOMSTR'] = "Compiling $TARGET"
447        env['ARCOMSTR'] = "Linking $TARGET"
448        env['LINKCOMSTR'] = "Linking $TARGET"
449        env['SHLINKCOMSTR'] = "Linking $TARGET"
450        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
451        env['BIBTEXCOMSTR'] = "Generating bibliography $TARGET"
452        env['MAKEINDEXCOMSTR'] = "Generating index $TARGET"
453        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
454        #Progress(['Checking -\r', 'Checking \\\r', 'Checking |\r', 'Checking /\r'], interval=17)
455    
456    ####################### Configure the subdirectories #########################
457    
458    # remove obsolete files
459    if not env['usempi']:
460        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPI')))
461        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPIredirect')))
462    
463    from grouptest import *
464    TestGroups=[]
465    
466  env['useparmetis'] = env_mpi['useparmetis']  # keep an environment without warnings-as-errors
467    dodgy_env=env.Clone()
468    
469  ############ Now we switch on Warnings as errors ###############  # now add warnings-as-errors flags. This needs to be done after configuration
470    # because the scons test files have warnings in them
471    if ((fatalwarning != '') and (env['werror'])):
472        env.Append(CCFLAGS = fatalwarning)
473    
474  #this needs to be done after configuration because the scons test files have warnings in them  Export(
475      ['env',
476       'dodgy_env',
477       'IS_WINDOWS',
478       'TestGroups'
479      ]
480    )
481    
482  if ((fatalwarning != "") and (env['usewarnings'])):  env.SConscript(dirs = ['tools/escriptconvert'], variant_dir='$BUILD_DIR/$PLATFORM/tools/escriptconvert', duplicate=0)
483    env.Append(CCFLAGS        = fatalwarning)  env.SConscript(dirs = ['paso/src'], variant_dir='$BUILD_DIR/$PLATFORM/paso', duplicate=0)
484    env_mpi.Append(CCFLAGS        = fatalwarning)  env.SConscript(dirs = ['weipa/src'], variant_dir='$BUILD_DIR/$PLATFORM/weipa', duplicate=0)
485    env.SConscript(dirs = ['escript/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/escript', duplicate=0)
486  ############ Summarize our environment #########################  
487    #This will pull in the escriptcore/py_src and escriptcore/test
488  print ""  env.SConscript(dirs = ['escriptcore/src'], variant_dir='$BUILD_DIR/$PLATFORM/escriptcore', duplicate=0)
489  print "Summary of configuration (see ./config.log for information)"  #env.SConscript(dirs = ['escript/test'], variant_dir='$BUILD_DIR/$PLATFORM/escript/test', duplicate=0)
490  print " Using python libraries"  env.SConscript(dirs = ['esysUtils/src'], variant_dir='$BUILD_DIR/$PLATFORM/esysUtils', duplicate=0)
491  print " Using numarray"  env.SConscript(dirs = ['pasowrap/src'], variant_dir='$BUILD_DIR/$PLATFORM/pasowrap', duplicate=0)
492  print " Using boost"  env.SConscript(dirs = ['dudley/src'], variant_dir='$BUILD_DIR/$PLATFORM/dudley', duplicate=0)
493  if env['usenetcdf']: print "    Using NetCDF"  env.SConscript(dirs = ['finley/src'], variant_dir='$BUILD_DIR/$PLATFORM/finley', duplicate=0)
494  else: print "   Not using NetCDF"  env.SConscript(dirs = ['ripley/src'], variant_dir='$BUILD_DIR/$PLATFORM/ripley', duplicate=0)
495  if env['usevtk']: print "   Using VTK"  env.SConscript(dirs = ['downunder/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/downunder', duplicate=0)
496  else: print "   Not using VTK"  env.SConscript(dirs = ['modellib/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/modellib', duplicate=0)
497  if env['usemkl']: print "   Using MKL"  env.SConscript(dirs = ['pycad/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pycad', duplicate=0)
498  else: print "   Not using MKL"  env.SConscript(dirs = ['pythonMPI/src'], variant_dir='$BUILD_DIR/$PLATFORM/pythonMPI', duplicate=0)
499  if env['useumfpack']: print "   Using UMFPACK"  env.SConscript(dirs = ['doc'], variant_dir='$BUILD_DIR/$PLATFORM/doc', duplicate=0)
500  else: print "   Not using UMFPACK"  env.SConscript(dirs = ['paso/profiling'], variant_dir='$BUILD_DIR/$PLATFORM/paso/profiling', duplicate=0)
 if env['usesilo']: print "  Using Silo"  
 else: print "   Not using Silo"  
 if env['useopenmp']: print "    Using OpenMP"  
 else: print "   Not using OpenMP"  
 if env['usempi']: print "   Using MPI"  
 else: print "   Not using MPI"  
 if env['useparmetis']: print "  Using ParMETIS"  
 else: print "   Not using ParMETIS (requires MPI)"  
 if env['usepapi']: print "  Using PAPI"  
 else: print "   Not using PAPI"  
 if env['usedebug']: print " Compiling for debug"  
 else: print "   Not compiling for debug"  
 print " Installing in", prefix  
 if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"  
 else: print "   Not treating warnings as errors"  
 print ""  
   
 ############ Delete option-dependent files #####################  
   
 Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))  
 Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))  
 Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))  
 if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))  
501    
502    
503  ############ Build the subdirectories ##########################  ######################## Populate the buildvars file #########################
504    
505  from grouptest import *  write_buildvars(env)
506    
507  TestGroups=[]  ################### Targets to build and install libraries ###################
508    
509  Export(  target_init = env.Command(os.path.join(env['pyinstall'],'__init__.py'), None, Touch('$TARGET'))
510    ["env",  env.Alias('target_init', [target_init])
511     "env_mpi",  # delete buildvars upon cleanup
512     "clone_env",  env.Clean('target_init', os.path.join(env['libinstall'], 'buildvars'))
    "IS_WINDOWS_PLATFORM",  
    "TestGroups"  
    ]  
   )  
   
 env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  
 env.SConscript(dirs = ['tools/libescriptreader/src'], build_dir='build/$PLATFORM/tools/libescriptreader', duplicate=0)  
 env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  
 env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  
 env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  
 env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  
 env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)  
 env.SConscript(dirs = ['doc'], build_dir='build/$PLATFORM/doc', duplicate=0)  
 env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  
 env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  
 env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  
 env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)  
 env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)  
   
   
 ############ Remember what optimizations we used ###############  
   
 remember_list = []  
   
 if env['usedebug']:  
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))  
   
 if env['usempi']:  
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))  
513    
514  if env['omp_optim'] != '':  # The headers have to be installed prior to build in order to satisfy
515    remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))  # #include <paso/Common.h>
516    env.Alias('build_esysUtils', ['install_esysUtils_headers', 'build_esysUtils_lib'])
517    env.Alias('install_esysUtils', ['build_esysUtils', 'install_esysUtils_lib'])
518    
519  env.Alias('remember_options', remember_list)  env.Alias('build_paso', ['install_paso_headers', 'build_paso_lib'])
520    env.Alias('install_paso', ['build_paso', 'install_paso_lib'])
521    
522  ############ Targets to build and install libraries ############  env.Alias('build_escript', ['install_escript_headers', 'build_escript_lib', 'build_escriptcpp_lib'])
523    env.Alias('install_escript', ['build_escript', 'install_escript_lib', 'install_escriptcpp_lib', 'install_escriptcore_py', 'install_escript_py'])
524    
525  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  env.Alias('build_pasowrap', ['install_pasowrap_headers', 'build_pasowrap_lib', 'build_pasowrapcpp_lib'])
526  env.Alias('target_init', [target_init])  env.Alias('install_pasowrap', ['build_pasowrap', 'install_pasowrap_lib', 'install_pasowrapcpp_lib', 'install_pasowrap_py'])
527    
528    env.Alias('build_dudley', ['install_dudley_headers', 'build_dudley_lib', 'build_dudleycpp_lib'])
529    env.Alias('install_dudley', ['build_dudley', 'install_dudley_lib', 'install_dudleycpp_lib', 'install_dudley_py'])
530    
531  # The headers have to be installed prior to build in order to satisfy #include <paso/Common.h>  env.Alias('build_finley', ['install_finley_headers', 'build_finley_lib', 'build_finleycpp_lib'])
532  env.Alias('build_esysUtils', ['target_install_esysUtils_headers', 'target_esysUtils_a'])  env.Alias('install_finley', ['build_finley', 'install_finley_lib', 'install_finleycpp_lib', 'install_finley_py'])
 env.Alias('install_esysUtils', ['build_esysUtils', 'target_install_esysUtils_a'])  
533    
534  env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])  env.Alias('build_ripley', ['install_ripley_headers', 'build_ripley_lib', 'build_ripleycpp_lib'])
535  env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])  env.Alias('install_ripley', ['build_ripley', 'install_ripley_lib', 'install_ripleycpp_lib', 'install_ripley_py'])
536    
537  env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])  env.Alias('build_weipa', ['install_weipa_headers', 'build_weipa_lib', 'build_weipacpp_lib'])
538  env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])  env.Alias('install_weipa', ['build_weipa', 'install_weipa_lib', 'install_weipacpp_lib', 'install_weipa_py'])
539    
540  env.Alias('build_finley', ['target_install_finley_headers', 'target_finley_so', 'target_finleycpp_so'])  env.Alias('build_escriptreader', ['install_weipa_headers', 'build_escriptreader_lib'])
541  env.Alias('install_finley', ['build_finley', 'target_install_finley_so', 'target_install_finleycpp_so', 'target_install_finley_py'])  env.Alias('install_escriptreader', ['build_escriptreader', 'install_escriptreader_lib'])
542    
543  # Now gather all the above into a couple easy targets: build_all and install_all  # Now gather all the above into some easy targets: build_all and install_all
544  build_all_list = []  build_all_list = []
545  build_all_list += ['build_esysUtils']  build_all_list += ['build_esysUtils']
546  build_all_list += ['build_paso']  build_all_list += ['build_paso']
547  build_all_list += ['build_escript']  build_all_list += ['build_escript']
548    build_all_list += ['build_pasowrap']
549    build_all_list += ['build_dudley']
550  build_all_list += ['build_finley']  build_all_list += ['build_finley']
551  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  build_all_list += ['build_ripley']
552  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_escript_wrapper']  build_all_list += ['build_weipa']
553  if env['usesilo']:  build_all_list += ['target_escript2silo']  if not IS_WINDOWS: build_all_list += ['build_escriptreader']
554    if env['usempi']:   build_all_list += ['build_pythonMPI']
555    build_all_list += ['build_escriptconvert']
556  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
557    
558  install_all_list = []  install_all_list = []
# Line 711  install_all_list += ['target_init'] Line 560  install_all_list += ['target_init']
560  install_all_list += ['install_esysUtils']  install_all_list += ['install_esysUtils']
561  install_all_list += ['install_paso']  install_all_list += ['install_paso']
562  install_all_list += ['install_escript']  install_all_list += ['install_escript']
563    install_all_list += ['install_pasowrap']
564    install_all_list += ['install_dudley']
565  install_all_list += ['install_finley']  install_all_list += ['install_finley']
566  install_all_list += ['target_install_pyvisi_py']  install_all_list += ['install_ripley']
567  install_all_list += ['target_install_modellib_py']  install_all_list += ['install_weipa']
568  install_all_list += ['target_install_pycad_py']  if not IS_WINDOWS: install_all_list += ['install_escriptreader']
569  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  install_all_list += ['install_downunder_py']
570  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_escript_wrapper']  install_all_list += ['install_modellib_py']
571  if env['usesilo']:  install_all_list += ['target_install_escript2silo']  install_all_list += ['install_pycad_py']
572  install_all_list += ['remember_options']  if env['usempi']:   install_all_list += ['install_pythonMPI']
573    install_all_list += ['install_escriptconvert']
574  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
575    
576  # Default target is install  # Default target is install
577  env.Default('install_all')  env.Default('install_all')
578    
579  ############ Targets to build and run the test suite ###########  ################## Targets to build and run the test suite ###################
580    
581  env.Alias('build_cppunittest', ['target_install_cppunittest_headers', 'target_cppunittest_a'])  if not env['cppunit']:
582  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])      test_msg = env.Command('.dummy.', None, '@echo "Cannot run C++ unit tests, CppUnit not found!";exit 1')
583  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])      env.Alias('run_tests', test_msg)
584  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])      env.Alias('build_tests', '')
585    env.Alias('run_tests', ['install_all'])
586    env.Alias('all_tests', ['install_all', 'run_tests', 'py_tests'])
587  env.Alias('build_full',['install_all','build_tests','build_py_tests'])  env.Alias('build_full',['install_all','build_tests','build_py_tests'])
588    env.Alias('build_PasoTests','$BUILD_DIR/$PLATFORM/paso/profiling/PasoTests')
589    
590  ############ Targets to build the documentation ################  ##################### Targets to build the documentation #####################
591    
592  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])  env.Alias('pdfdocs',['user_pdf', 'install_pdf', 'cookbook_pdf', 'inversion_pdf'])
593    env.Alias('basedocs', ['pdfdocs','examples_tarfile', 'examples_zipfile', 'api_doxygen'])
594    env.Alias('docs', ['basedocs', 'sphinxdoc'])
595    env.Alias('release_prep', ['docs', 'install_all'])
596    env.Alias('release_prep_old', ['basedocs', 'api_epydoc', 'install_all'])
597    
598    # The test scripts are always generated, this target allows us to
599    # generate the testscripts without doing a full build
600    env.Alias('testscripts',[])
601    
602    if not IS_WINDOWS:
603        generateTestScripts(env, TestGroups)
604    
605    
606    
607    ######################## Summarize our environment ###########################
608    def print_summary():
609        print("")
610        print("*** Config Summary (see config.log and <prefix>/lib/buildvars for details) ***")
611        print("Escript/Finley revision %s"%global_revision)
612        print("  Install prefix:  %s"%env['prefix'])
613        print("          Python:  %s"%sysconfig.PREFIX)
614        print("           boost:  %s"%env['boost_prefix'])
615        if env['numpy_h']:
616            print("           numpy:  YES (with headers)")
617        else:
618            print("           numpy:  YES (without headers)")
619        if env['usempi']:
620            print("             MPI:  YES (flavour: %s)"%env['mpi'])
621        else:
622            print("             MPI:  DISABLED")
623        if env['uselapack']:
624            print("          LAPACK:  YES (flavour: %s)"%env['lapack'])
625        else:
626            print("          LAPACK:  DISABLED")
627        d_list=[]
628        e_list=[]
629        for i in 'debug','openmp','boomeramg','gdal','mkl','netcdf','papi','parmetis','pyproj','scipy','silo','sympy','umfpack','visit','vsl_random':
630            if env[i]: e_list.append(i)
631            else: d_list.append(i)
632        for i in e_list:
633            print("%16s:  YES"%i)
634        for i in d_list:
635            print("%16s:  DISABLED"%i)
636        if env['cppunit']:
637            print("         CppUnit:  FOUND")
638        else:
639            print("         CppUnit:  NOT FOUND")
640        if env['gmsh']=='m':
641            print("            gmsh:  FOUND, MPI-ENABLED")
642        elif env['gmsh']=='s':
643            print("            gmsh:  FOUND")
644        else:
645            print("            gmsh:  NOT FOUND")
646    
647        if ((fatalwarning != '') and (env['werror'])):
648            print("  Treating warnings as errors")
649        else:
650            print("  NOT treating warnings as errors")
651        print("")
652        for w in env['warnings']:
653            print("WARNING: %s"%w)
654    
655  if not IS_WINDOWS_PLATFORM:  atexit.register(print_summary)
    try:  
     utest=open("utest.sh","w")  
     build_platform=os.name      #Sometimes Mac python says it is posix  
     if (build_platform=='posix') and platform.system()=="Darwin":  
         build_platform='darwin'  
     utest.write(GroupTest.makeHeader(build_platform))  
     for tests in TestGroups:  
         utest.write(tests.makeString())  
     utest.close()  
     print "utest.sh written"  
    except IOError:  
     print "Error attempting to write unittests file."  
     sys.exit(1)  
656    

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