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revision 2881 by jfenwick, Thu Jan 28 02:03:15 2010 UTC revision 4542 by jfenwick, Thu Nov 28 01:33:22 2013 UTC
# Line 1  Line 1 
1    ##############################################################################
 ########################################################  
2  #  #
3  # Copyright (c) 2003-2010 by University of Queensland  # Copyright (c) 2003-2013 by University of Queensland
4  # Earth Systems Science Computational Center (ESSCC)  # http://www.uq.edu.au
 # http://www.uq.edu.au/esscc  
5  #  #
6  # Primary Business: Queensland, Australia  # Primary Business: Queensland, Australia
7  # Licensed under the Open Software License version 3.0  # Licensed under the Open Software License version 3.0
8  # http://www.opensource.org/licenses/osl-3.0.php  # http://www.opensource.org/licenses/osl-3.0.php
9  #  #
10  ########################################################  # Development until 2012 by Earth Systems Science Computational Center (ESSCC)
11    # Development since 2012 by School of Earth Sciences
12    #
13  EnsureSConsVersion(0,96,91)  ##############################################################################
 EnsurePythonVersion(2,3)  
   
 import sys, os, re, socket, platform, stat  
 # For copy()  
 import shutil  
   
 # Add our extensions  
 if os.path.isdir('scons'): sys.path.append('scons')  
 import scons_extensions  
14    
15  # Use /usr/lib64 if available, else /usr/lib  EnsureSConsVersion(0,98,1)
16  usr_lib = '/usr/lib'  EnsurePythonVersion(2,5)
 if os.path.isfile('/usr/lib64/libc.so'): usr_lib = '/usr/lib64'  
17    
18  # The string python2.4 or python2.5  import atexit, sys, os, platform, re
19  python_version = 'python%s.%s' % (sys.version_info[0], sys.version_info[1])  from distutils import sysconfig
20    from dependencies import *
21    from site_init import *
22    
23    # Version number to check for in options file. Increment when new features are
24    # added or existing options changed.
25    REQUIRED_OPTS_VERSION=201
26    
27  # MS Windows support, many thanks to PH  # MS Windows support, many thanks to PH
28  IS_WINDOWS_PLATFORM = (os.name== "nt")  IS_WINDOWS = (os.name == 'nt')
29    
30  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)  ########################## Determine options file ############################
31    # 1. command line
32  #Holds names of variables from the calling environment which need to be passed  # 2. scons/<hostname>_options.py
33  #to tools  # 3. name as part of a cluster
 env_export=[]  
   
 #Determine where to read options from use:  
 #1. command line  
 #2. scons/<hostname>_options.py  
 #3. name as part of a cluster  
34  options_file=ARGUMENTS.get('options_file', None)  options_file=ARGUMENTS.get('options_file', None)
 effective_hostname=socket.gethostname().split('.')[0]  
35  if not options_file:  if not options_file:
36    mangledhostname = re.sub("[^0-9a-zA-Z]", "_", effective_hostname)      ext_dir = os.path.join(os.getcwd(), 'scons')
37    options_file = os.path.join("scons",mangledhostname+"_options.py")      hostname = platform.node().split('.')[0]
38    #If there is no options file with that name see if there is a substitute      for name in hostname, effectiveName(hostname):
39    if not os.path.isfile(options_file):          mangledhostname = re.sub('[^0-9a-zA-Z]', '_', hostname)
40      effective_hostname = scons_extensions.effectiveName(effective_hostname)          options_file = os.path.join(ext_dir, mangledhostname+'_options.py')
41      mangledhostname = re.sub("[^0-9a-zA-Z]", "_", effective_hostname)          if os.path.isfile(options_file): break
     options_file = os.path.join("scons",mangledhostname+"_options.py")  
42    
43  if not os.path.isfile(options_file):  if not os.path.isfile(options_file):
44    print "Options file not found (expected '%s')" % options_file      print("\nWARNING:\nOptions file %s" % options_file)
45    options_file = False      print("not found! Default options will be used which is most likely suboptimal.")
46  else:      print("We recommend that you copy one of the TEMPLATE files in the scons/")
47    print "Options file is", options_file      print("subdirectory and customize it to your needs.\n")
48        options_file = None
49  #Does our scons support the newer Variables class or do we need to use Options?  
50    ############################### Build options ################################
51  try:  
52     dummyvar=Variables  default_prefix='/usr'
53     opts = Variables(options_file, ARGUMENTS)  mpi_flavours=('no', 'none', 'MPT', 'MPICH', 'MPICH2', 'OPENMPI', 'INTELMPI')
54     adder = opts.AddVariables  lapack_flavours=('none', 'clapack', 'mkl')
55  except:  
56     opts = Options(options_file, ARGUMENTS)  vars = Variables(options_file, ARGUMENTS)
57     adder = opts.AddOptions  vars.AddVariables(
58     BoolVariable = BoolOption    PathVariable('options_file', 'Path to options file', options_file, PathVariable.PathIsFile),
59      PathVariable('prefix', 'Installation prefix', Dir('#.').abspath, PathVariable.PathIsDirCreate),
60  ############ Load build options ################################    PathVariable('build_dir', 'Top-level build directory', Dir('#/build').abspath, PathVariable.PathIsDirCreate),
61      BoolVariable('verbose', 'Output full compile/link lines', False),
62  adder(  # Compiler/Linker options
63  #opts.AddOptions(    ('cxx', 'Path to C++ compiler', 'default'),
64  # Where to install esys stuff    ('cc_flags', 'Base C++ compiler flags', 'default'),
65    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),    ('cc_optim', 'Additional C++ flags for a non-debug build', 'default'),
66    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),    ('cc_debug', 'Additional C++ flags for a debug build', 'default'),
67    ('bininstall', 'where the esys binaries will be installed',            os.path.join(prefix,'bin')),    ('cxx_extra', 'Extra C++ compiler flags', ''),
   ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),  
   ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),  
 # Compilation options  
   BoolVariable('dodebug', 'For backwards compatibility', 'no'),  
   BoolVariable('usedebug', 'Do you want a debug build?', 'no'),  
   BoolVariable('usevtk', 'Do you want to use VTK?', 'yes'),  
   ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),  
   ('win_cc_name', 'windows C compiler name if needed', 'msvc'),  
   # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below  
   ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),  
   ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),  
   ('cc_debug', 'C compiler debug flags to use', '-DEFAULT_3'),  
   ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),  
   ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),  
   ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),  
   ('cc_extra', 'Extra C/C++ flags', ''),  
68    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
69    ('sys_libs', 'System libraries to link with', []),    BoolVariable('werror','Treat compiler warnings as errors', True),
70    ('ar_flags', 'Static library archiver flags to use', ''),    BoolVariable('debug', 'Compile with debug flags', False),
71    BoolVariable('useopenmp', 'Compile parallel version using OpenMP', 'no'),    BoolVariable('openmp', 'Compile parallel version using OpenMP', False),
72    BoolVariable('usepedantic', 'Compile with -pedantic if using gcc', 'no'),    ('omp_flags', 'OpenMP compiler flags', 'default'),
73    BoolVariable('usewarnings','Compile with warnings as errors if using gcc','yes'),    ('omp_ldflags', 'OpenMP linker flags', 'default'),
74    ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),  # Mandatory libraries
75    ('forcecollres','for testing use only - set the default value for force resolving collective ops','leave_alone'),    ('boost_prefix', 'Prefix/Paths of boost installation', default_prefix),
76  # Python    ('boost_libs', 'Boost libraries to link with', ['boost_python-mt']),
77    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),  # Mandatory for tests
78    ('python_lib_path', 'Path to Python libs', usr_lib),    ('cppunit_prefix', 'Prefix/Paths of CppUnit installation', default_prefix),
79    ('python_libs', 'Python libraries to link with', [python_version]),    ('cppunit_libs', 'CppUnit libraries to link with', ['cppunit']),
80    ('python_cmd', 'Python command', 'python'),  # Optional libraries and options
81  # Boost    EnumVariable('mpi', 'Compile parallel version using MPI flavour', 'none', allowed_values=mpi_flavours),
82    ('boost_path', 'Path to Boost includes', '/usr/include'),    ('mpi_prefix', 'Prefix/Paths of MPI installation', default_prefix),
83    ('boost_lib_path', 'Path to Boost libs', usr_lib),    ('mpi_libs', 'MPI shared libraries to link with', ['mpi']),
84    ('boost_libs', 'Boost libraries to link with', ['boost_python']),    BoolVariable('netcdf', 'Enable netCDF file support', False),
85  # NetCDF    ('netcdf_prefix', 'Prefix/Paths of netCDF installation', default_prefix),
86    BoolVariable('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),    ('netcdf_libs', 'netCDF libraries to link with', ['netcdf_c++', 'netcdf']),
87    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),    BoolVariable('parmetis', 'Enable ParMETIS (requires MPI)', False),
88    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),    ('parmetis_prefix', 'Prefix/Paths of ParMETIS installation', default_prefix),
89    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),    ('parmetis_libs', 'ParMETIS libraries to link with', ['parmetis', 'metis']),
90  # MPI    BoolVariable('papi', 'Enable PAPI', False),
91    BoolVariable('useMPI', 'For backwards compatibility', 'no'),    ('papi_prefix', 'Prefix/Paths to PAPI installation', default_prefix),
   BoolVariable('usempi', 'Compile parallel version using MPI', 'no'),  
   ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),  
   ('mpi_path', 'Path to MPI includes', '/usr/include'),  
   ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),  
   ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),  
   ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', []),  
   ('mpi_flavour','Type of MPI execution environment','none'),  
 # ParMETIS  
   BoolVariable('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),  
   ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),  
   ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),  
   ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),  
 # PAPI  
   BoolVariable('usepapi', 'switch on/off the usage of PAPI', 'no'),  
   ('papi_path', 'Path to PAPI includes', '/usr/include'),  
   ('papi_lib_path', 'Path to PAPI libs', usr_lib),  
92    ('papi_libs', 'PAPI libraries to link with', ['papi']),    ('papi_libs', 'PAPI libraries to link with', ['papi']),
93    BoolVariable('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),    BoolVariable('papi_instrument_solver', 'Use PAPI to instrument each iteration of the solver', False),
94  # MKL    BoolVariable('mkl', 'Enable the Math Kernel Library', False),
95    BoolVariable('usemkl', 'switch on/off the usage of MKL', 'no'),    ('mkl_prefix', 'Prefix/Paths to MKL installation', default_prefix),
96    ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver','mkl_em64t','guide','pthread']),
97    ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),    BoolVariable('umfpack', 'Enable UMFPACK', False),
98    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),    ('umfpack_prefix', 'Prefix/Paths to UMFPACK installation', default_prefix),
99  # UMFPACK    ('umfpack_libs', 'UMFPACK libraries to link with', ['umfpack']),
100    BoolVariable('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),    BoolVariable('boomeramg', 'Enable BoomerAMG', False),
101    ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),    ('boomeramg_prefix', 'Prefix/Paths to BoomerAMG installation', default_prefix),
102    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('boomeramg_libs', 'BoomerAMG libraries to link with', ['boomeramg']),
103    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    EnumVariable('lapack', 'Set LAPACK flavour', 'none', allowed_values=lapack_flavours),
104    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('lapack_prefix', 'Prefix/Paths to LAPACK installation', default_prefix),
105  # Silo    ('lapack_libs', 'LAPACK libraries to link with', []),
106    BoolVariable('usesilo', 'switch on/off the usage of Silo', 'yes'),    BoolVariable('silo', 'Enable the Silo file format in weipa', False),
107    ('silo_path', 'Path to Silo includes', '/usr/include'),    ('silo_prefix', 'Prefix/Paths to Silo installation', default_prefix),
   ('silo_lib_path', 'Path to Silo libs', usr_lib),  
108    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),    ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
109  # AMD (used by UMFPACK)    BoolVariable('visit', 'Enable the VisIt simulation interface', False),
110    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    ('visit_prefix', 'Prefix/Paths to VisIt installation', default_prefix),
111    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('visit_libs', 'VisIt libraries to link with', ['simV2']),
112    ('amd_libs', 'AMD libraries to link with', ['amd']),    BoolVariable('vsl_random', 'Use VSL from intel for random data', False),
113  # BLAS (used by UMFPACK)  # Advanced settings
114    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),    #dudley_assemble_flags = -funroll-loops      to actually do something
115    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    ('dudley_assemble_flags', 'compiler flags for some dudley optimisations', ''),
116    ('blas_libs', 'BLAS libraries to link with', ['blas']),    # To enable passing function pointers through python
117  #Lapack options    BoolVariable('iknowwhatimdoing', 'Allow non-standard C', False),
118    BoolVariable('uselapack','switch on/off use of Lapack','no'),    # An option for specifying the compiler tools (see windows branch)
119    ('lapack_path', 'Path to Lapack includes','/usr/include'),    ('tools_names', 'Compiler tools to use', ['default']),
120    ('lapack_lib_path', 'Path to Lapack libs', usr_lib),    ('env_export', 'Environment variables to be passed to tools',[]),
121    ('lapack_libs', 'Lapack libraries to link with', []),    EnumVariable('forcelazy', 'For testing use only - set the default value for autolazy', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
122    ('lapack_type', '{clapack,mkl}','clapack'),    EnumVariable('forcecollres', 'For testing use only - set the default value for force resolving collective ops', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
123  # An option for specifying the compiler tools set (see windows branch).    # finer control over library building, intel aggressive global optimisation
124    ('tools_names', 'allow control over the tools in the env setup', ['intelc']),    # works with dynamic libraries on windows.
125  # finer control over library building, intel aggressive global optimisation    ('build_shared', 'Build dynamic libraries only', False),
126  # works with dynamic libraries on windows.    ('sys_libs', 'Extra libraries to link with', []),
127    ('share_esysUtils', 'control static or dynamic esysUtils lib', False),    ('escript_opts_version', 'Version of options file (do not specify on command line)'),
128    ('share_paso', 'control static or dynamic paso lib', False),    ('SVN_VERSION', 'Do not use from options file', -2),
129    ('env_export','Environment variables to be passed to children',[]),    ('pythoncmd', 'which python to compile with','python'),
130  #To enable passing function pointers through python    ('usepython3', 'Is this a python3 build? (experimental)', False),
131    BoolVariable('iknowwhatimdoing','allow nonstandard C',False)    ('pythonlibname', 'Name of the python library to link. (This is found automatically for python2.X.)', ''),
132      ('pythonlibpath', 'Path to the python library. (You should not need to set this unless your python has moved)',''),
133      ('pythonincpath','Path to python include files. (You should not need to set this unless your python has moved',''),
134      BoolVariable('BADPYTHONMACROS','Extra \#include to get around a python bug.', True),
135  )  )
136    
137    ##################### Create environment and help text #######################
138    
139    # Intel's compiler uses regular expressions improperly and emits a warning
140    # about failing to find the compilers. This warning can be safely ignored.
141    
142  ############ Specify which compilers to use ####################  # PATH is needed so the compiler, linker and tools are found if they are not
143    # in default locations.
144  # intelc uses regular expressions improperly and emits a warning about  env = Environment(tools = ['default'], options = vars,
145  # failing to find the compilers.  This warning can be safely ignored.                    ENV = {'PATH': os.environ['PATH']})
146    
147  if IS_WINDOWS_PLATFORM:  # set the vars for clang
148        env = Environment(options = opts)  def mkclang(env):
149        env = Environment(tools = ['default'] + env['tools_names'],      env['CXX']='clang++'
150                          options = opts)  
151  else:  if env['tools_names'] != 'default':
152     if effective_hostname == 'service0':      zz=env['tools_names']
153        env = Environment(tools = ['default', 'intelc'], options = opts)      if 'clang' in zz:
154     elif os.uname()[4]=='ia64':          zz.remove('clang')
155        env = Environment(tools = ['default', 'intelc'], options = opts)          zz.insert(0, mkclang)
156        if env['CXX'] == 'icpc':      env = Environment(tools = ['default'] + env['tools_names'], options = vars,
157           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)                        ENV = {'PATH' : os.environ['PATH']})
158     else:  
159        env = Environment(tools = ['default'], options = opts)  if options_file:
160  Help(opts.GenerateHelpText(env))      opts_valid=False
161        if 'escript_opts_version' in env.Dictionary() and \
162            int(env['escript_opts_version']) >= REQUIRED_OPTS_VERSION:
163  ############ Make sure target directories exist ################              opts_valid=True
164        if opts_valid:
165            print("Using options in %s." % options_file)
166        else:
167            print("\nOptions file %s" % options_file)
168            print("is outdated! Please update the file by examining one of the TEMPLATE")
169            print("files in the scons/ subdirectory and setting escript_opts_version to %d.\n"%REQUIRED_OPTS_VERSION)
170            Exit(1)
171    
172    # Generate help text (scons -h)
173    Help(vars.GenerateHelpText(env))
174    
175    # Check for superfluous options
176    if len(vars.UnknownVariables())>0:
177        for k in vars.UnknownVariables():
178            print("Unknown option '%s'" % k)
179        Exit(1)
180    
181    # create dictionary which will be populated with info for buildvars file
182    env['buildvars']={}
183    # create list which will be populated with warnings if there are any
184    env['warnings']=[]
185    
186    #################### Make sure install directories exist #####################
187    
188    env['BUILD_DIR']=Dir(env['build_dir']).abspath
189    prefix=Dir(env['prefix']).abspath
190    env['buildvars']['prefix']=prefix
191    env['incinstall'] = os.path.join(prefix, 'include')
192    env['bininstall'] = os.path.join(prefix, 'bin')
193    env['libinstall'] = os.path.join(prefix, 'lib')
194    env['pyinstall']  = os.path.join(prefix, 'esys')
195  if not os.path.isdir(env['bininstall']):  if not os.path.isdir(env['bininstall']):
196      os.makedirs(env['bininstall'])      os.makedirs(env['bininstall'])
197  if not os.path.isdir(env['libinstall']):  if not os.path.isdir(env['libinstall']):
# Line 210  if not os.path.isdir(env['libinstall']): Line 199  if not os.path.isdir(env['libinstall']):
199  if not os.path.isdir(env['pyinstall']):  if not os.path.isdir(env['pyinstall']):
200      os.makedirs(env['pyinstall'])      os.makedirs(env['pyinstall'])
201    
202  ########## Copy required environment vars ######################  env.Append(CPPPATH = [env['incinstall']])
203    env.Append(LIBPATH = [env['libinstall']])
 for i in env['env_export']:  
    env.Append(ENV = {i:os.environ[i]})  
   
 ############ Fill in compiler options if not set above #########  
   
 # Backwards compatibility: allow dodebug=yes and useMPI=yes  
 if env['dodebug']: env['usedebug'] = 1  
 if env['useMPI']: env['usempi'] = 1  
   
 # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  
 # For both C and C++ you get: cc_flags and either the optim flags or debug flags  
   
 sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.  
   
 if env["CC"] == "icc":  
   # Intel compilers  
   cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"  
   cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"  
   cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  
   omp_optim     = "-openmp -openmp_report0"  
   omp_debug     = "-openmp -openmp_report0"  
   omp_libs      = ['guide', 'pthread']  
   pedantic      = ""  
   fatalwarning      = ""        # Switch to turn warnings into errors  
   sysheaderopt      = ""  
 elif env["CC"] == "gcc":  
   # GNU C on any system  
   cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"  
 #the long long warning occurs on the Mac  
   cc_optim      = "-O3"  
   cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"  
   omp_optim     = "-fopenmp"  
   omp_debug     = "-fopenmp"  
   omp_libs      = []  
   pedantic      = "-pedantic-errors -Wno-long-long"  
   fatalwarning      = "-Werror"  
   sysheaderopt      = "-isystem "  
 elif env["CC"] == "cl":  
   # Microsoft Visual C on Windows  
   cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"  
   cc_optim      = "/O2 /Op /MT /W3"  
   cc_debug      = "/Od /RTC1 /MTd /ZI -DBOUNDS_CHECK"  
   omp_optim     = ""  
   omp_debug     = ""  
   omp_libs      = []  
   pedantic      = ""  
   fatalwarning      = ""  
   sysheaderopt      = ""  
 elif env["CC"] == "icl":  
   # intel C on Windows, see windows_intelc_options.py for a start  
   pedantic      = ""  
   fatalwarning      = ""  
   sysheaderopt      = ""  
   
   
 # If not specified in hostname_options.py then set them here  
 if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  
 if env["cc_optim"]  == "-DEFAULT_2": env['cc_optim'] = cc_optim  
 if env["cc_debug"]  == "-DEFAULT_3": env['cc_debug'] = cc_debug  
 if env["omp_optim"] == "-DEFAULT_4": env['omp_optim'] = omp_optim  
 if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  
 if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  
   
 #set up the autolazy values  
 if env['forcelazy']    != "leave_alone":  
   if env['forcelazy'] == 'on':  
     env.Append(CPPDEFINES=['FAUTOLAZYON'])  
   else:  
      if env['forcelazy'] == 'off':  
     env.Append(CPPDEFINES=['FAUTOLAZYOFF'])  
   
 #set up the colective resolve values  
 if env['forcecollres']    != "leave_alone":  
   print env['forcecollres']  
   if env['forcecollres'] == 'on':  
     env.Append(CPPDEFINES=['FRESCOLLECTON'])  
   else:  
      if env['forcecollres'] == 'off':  
     env.Append(CPPDEFINES=['FRESCOLLECTOFF'])  
   
   
 if env['iknowwhatimdoing']:  
     env.Append(CPPDEFINES=['IKNOWWHATIMDOING'])  
   
 # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  
 if not env["useopenmp"]:  
   env['omp_optim'] = ""  
   env['omp_debug'] = ""  
   env['omp_libs'] = []  
   
 if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0  
   
 # Windows doesn't use LD_LIBRARY_PATH but PATH instead  
 if IS_WINDOWS_PLATFORM:  
     LD_LIBRARY_PATH_KEY='PATH'  
     env['ENV']['LD_LIBRARY_PATH']=''  
 else:  
     LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'  
 ############ Copy environment variables into scons env #########  
   
 try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']  
 except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1  
   
 try: env['ENV']['ESCRIPT_NUM_THREADS'] = os.environ['ESCRIPT_NUM_THREADS']  
 except KeyError: pass  
   
 try: env['ENV']['ESCRIPT_NUM_PROCS'] = os.environ['ESCRIPT_NUM_PROCS']  
 except KeyError: env['ENV']['ESCRIPT_NUM_PROCS']=1  
204    
205  try: env['ENV']['ESCRIPT_NUM_NODES'] = os.environ['ESCRIPT_NUM_NODES']  ################# Fill in compiler options if not set above ##################
 except KeyError: env['ENV']['ESCRIPT_NUM_NODES']=1  
   
 try: env['ENV']['ESCRIPT_HOSTFILE'] = os.environ['ESCRIPT_HOSTFILE']  
 except KeyError: pass  
   
 try: env['ENV']['PATH'] = os.environ['PATH']  
 except KeyError: pass  
   
 try: env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']  
 except KeyError: pass  
   
 try: env['ENV']['C_INCLUDE_PATH'] = os.environ['C_INCLUDE_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']  
 except KeyError: pass  
   
 try: env.PrependENVPath(LD_LIBRARY_PATH_KEY,os.environ['LD_LIBRARY_PATH'])  
 except KeyError: pass  
   
 try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']  
 except KeyError: pass  
   
 try: env['ENV']['DISPLAY'] = os.environ['DISPLAY']  
 except KeyError: pass  
   
 try: env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']  
 except KeyError: pass  
   
 try: env['ENV']['HOME'] = os.environ['HOME']  
 except KeyError: pass  
   
 # Configure for test suite  
   
   
 env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
 env.PrependENVPath('PYTHONPATH', prefix)  
 env['ENV']['ESCRIPT_ROOT'] = prefix  
   
 ############ Set up paths for Configure() ######################  
   
 # Make a copy of an environment  
 # Use env.Clone if available, but fall back on env.Copy for older version of scons  
 def clone_env(env):  
   if 'Clone' in dir(env): return env.Clone()    # scons-0.98  
   else:                   return env.Copy() # scons-0.96  
   
 # Add cc option -I<Escript>/trunk/include  
 env.Append(CPPPATH      = [Dir('include')])  
   
 # Add cc option -L<Escript>/trunk/lib  
 env.Append(LIBPATH      = [Dir(env['libinstall'])])  
   
 if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])  
 if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])  
   
 if env['usepedantic']: env.Append(CCFLAGS = pedantic)  
   
 # MS Windows  
 if IS_WINDOWS_PLATFORM:  
   env.AppendENVPath('PATH', [env['boost_lib_path']])  
   env.AppendENVPath('PATH', [env['libinstall']])  
   if not env['share_esysUtils'] :  
     env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])  
   if not env['share_paso'] :  
     env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])  
   
   if env['usenetcdf']:  
     env.AppendENVPath('PATH',   [env['netCDF_lib_path']])  
   
 env.Append(ARFLAGS = env['ar_flags'])  
   
 # Get the global Subversion revision number for getVersion() method  
 try:  
    global_revision = os.popen("svnversion -n .").read()  
    global_revision = re.sub(":.*", "", global_revision)  
    global_revision = re.sub("[^0-9]", "", global_revision)  
 except:  
    global_revision="-1"  
 if global_revision == "": global_revision="-2"  
 env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])  
   
 ############ numpy (required) ###############################  
   
 try:  
   from numpy import identity  
 except ImportError:  
   print "Cannot import numpy, you need to set your PYTHONPATH"  
   sys.exit(1)  
206    
207  ############ C compiler (required) #############################  if env['cxx'] != 'default': env['CXX']=env['cxx']
208    
209  # Create a Configure() environment for checking existence of required libraries and headers  # version >=9 of intel C++ compiler requires use of icpc to link in C++
210  conf = Configure(clone_env(env))  # runtimes (icc does not)
211    if not IS_WINDOWS and os.uname()[4]=='ia64' and env['CXX']=='icpc':
212        env['LINK'] = env['CXX']
213    
214    # default compiler/linker options
215    cc_flags = ''
216    cc_optim = ''
217    cc_debug = ''
218    omp_flags = ''
219    omp_ldflags = ''
220    fatalwarning = '' # switch to turn warnings into errors
221    sysheaderopt = '' # how to indicate that a header is a system header
222    
223    # env['CC'] might be a full path
224    cc_name=os.path.basename(env['CXX'])
225    
226    if cc_name == 'icpc':
227        # Intel compiler
228        # #1875: offsetof applied to non-POD types is nonstandard (in boost)
229        # removed -std=c99 because icpc doesn't like it and we aren't using c anymore
230        cc_flags    = "-fPIC -w2 -wd1875 -Wno-unknown-pragmas -DBLOCKTIMER -DCORE_ID1"
231        cc_optim    = "-O3 -ftz -fno-alias -ipo -xHost"
232        cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
233        omp_flags   = "-openmp"
234        omp_ldflags = "-openmp -openmp_report=1"
235        fatalwarning = "-Werror"
236    elif cc_name[:3] == 'g++':
237        # GNU C on any system
238        # note that -ffast-math is not used because it breaks isnan(),
239        # see mantis #691
240        cc_flags     = "-pedantic -Wall -fPIC -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"
241        cc_optim     = "-O3"
242        cc_debug     = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
243        omp_flags    = "-fopenmp"
244        omp_ldflags  = "-fopenmp"
245        fatalwarning = "-Werror"
246        sysheaderopt = "-isystem"
247    elif cc_name == 'cl':
248        # Microsoft Visual C on Windows
249        cc_flags     = "/EHsc /MD /GR /wd4068 /D_USE_MATH_DEFINES /DDLL_NETCDF"
250        cc_optim     = "/O2 /Op /W3"
251        cc_debug     = "/Od /RTCcsu /ZI /DBOUNDS_CHECK"
252        fatalwarning = "/WX"
253    elif cc_name == 'icl':
254        # Intel C on Windows
255        cc_flags     = '/EHsc /GR /MD'
256        cc_optim     = '/fast /Oi /W3 /Qssp /Qinline-factor- /Qinline-min-size=0 /Qunroll'
257        cc_debug     = '/Od /RTCcsu /Zi /Y- /debug:all /Qtrapuv'
258        omp_flags    = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
259        omp_ldflags  = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
260    
261    env['sysheaderopt']=sysheaderopt
262    
263    # set defaults if not otherwise specified
264    if env['cc_flags']    == 'default': env['cc_flags'] = cc_flags
265    if env['cc_optim']    == 'default': env['cc_optim'] = cc_optim
266    if env['cc_debug']    == 'default': env['cc_debug'] = cc_debug
267    if env['omp_flags']   == 'default': env['omp_flags'] = omp_flags
268    if env['omp_ldflags'] == 'default': env['omp_ldflags'] = omp_ldflags
269    if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
270    if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])
271    
272    if env['BADPYTHONMACROS']: env.Append(CXXFLAGS = ' -DBADPYTHONMACROS')
273    
274    if env['usepython3']:
275        env.Append(CPPDEFINES=['ESPYTHON3'])
276    
277    # set up the autolazy values
278    if env['forcelazy'] == 'on':
279        env.Append(CPPDEFINES=['FAUTOLAZYON'])
280    elif env['forcelazy'] == 'off':
281        env.Append(CPPDEFINES=['FAUTOLAZYOFF'])
282    
283    # set up the collective resolve values
284    if env['forcecollres'] == 'on':
285        env.Append(CPPDEFINES=['FRESCOLLECTON'])
286    elif env['forcecollres'] == 'off':
287        env.Append(CPPDEFINES=['FRESCOLLECTOFF'])
288    
289  # Test that the compiler is working  # allow non-standard C if requested
290  if not conf.CheckFunc('printf'):  if env['iknowwhatimdoing']:
291     print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])      env.Append(CPPDEFINES=['IKNOWWHATIMDOING'])
    sys.exit(1)  
   
 if conf.CheckFunc('gethostname'):  
   conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])  
   
 ############ python libraries (required) #######################  
292    
293    # Disable OpenMP if no flags provided
294    if env['openmp'] and env['omp_flags'] == '':
295       env['warnings'].append("OpenMP requested but no flags provided - disabling OpenMP!")
296       env['openmp'] = False
297    
298  if not sysheaderopt =="":  if env['openmp']:
299    conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])      env.Append(CCFLAGS = env['omp_flags'])
300        if env['omp_ldflags'] != '': env.Append(LINKFLAGS = env['omp_ldflags'])
301  else:  else:
302    conf.env.AppendUnique(CPPPATH     = [env['python_path']])      env['omp_flags']=''
303        env['omp_ldflags']=''
304    
305  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  env['buildvars']['openmp']=int(env['openmp'])
 conf.env.AppendUnique(LIBS      = [env['python_libs']])  
306    
307  conf.env.PrependENVPath('PYTHONPATH', prefix)  # add debug/non-debug compiler flags
308  conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['python_lib_path'])    # The wrapper script needs to find these libs  env['buildvars']['debug']=int(env['debug'])
309  conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  if env['debug']:
310        env.Append(CCFLAGS = env['cc_debug'])
 if not conf.CheckCHeader('Python.h'):  
   print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])  
   sys.exit(1)  
 if not conf.CheckFunc('Py_Exit'):  
   print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])  
   sys.exit(1)  
   
 ############ boost (required) ##################################  
   
 if not sysheaderopt =="":  
 # This is required because we can't -isystem /usr/system because it breaks std includes  
   if os.path.normpath(env['boost_path']) =="/usr/include":  
     conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))  
   else:  
     conf.env.Append(CCFLAGS=sysheaderopt+env['boost_path'])  
311  else:  else:
312    conf.env.AppendUnique(CPPPATH     = [env['boost_path']])      env.Append(CCFLAGS = env['cc_optim'])
   
 conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  
 conf.env.AppendUnique(LIBS      = [env['boost_libs']])  
313    
314  conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['boost_lib_path']) # The wrapper script needs to find these libs  # always add cc_flags
315  #ensure that our path entries remain at the front  env.Append(CCFLAGS = env['cc_flags'])
 conf.env.PrependENVPath('PYTHONPATH', prefix)  
 conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
316    
317  if not conf.CheckCXXHeader('boost/python.hpp'):  # add system libraries
318    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])  env.AppendUnique(LIBS = env['sys_libs'])
   sys.exit(1)  
319    
320  if not conf.CheckFunc('PyObject_SetAttr'):  # determine svn revision
321    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])  global_revision=ARGUMENTS.get('SVN_VERSION', None)
322    sys.exit(1)  if global_revision:
323        global_revision = re.sub(':.*', '', global_revision)
324  # Commit changes to environment      global_revision = re.sub('[^0-9]', '', global_revision)
325  env = conf.Finish()      if global_revision == '': global_revision='-2'
   
 ############ VTK (optional) ####################################  
   
 if env['usevtk']:  
   try:  
     import vtk  
     env['usevtk'] = 1  
   except ImportError:  
     env['usevtk'] = 0  
   
 # Add VTK to environment env if it was found  
 if env['usevtk']:  
   env.Append(CPPDEFINES = ['USE_VTK'])  
   
 ############ NetCDF (optional) #################################  
   
 conf = Configure(clone_env(env))  
   
 if env['usenetcdf']:  
   conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])  
   conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['netCDF_lib_path'])  # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
   
 if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  
 if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  
   
 # Add NetCDF to environment env if it was found  
 if env['usenetcdf']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['USE_NETCDF'])  
326  else:  else:
327    conf.Finish()    # Get the global Subversion revision number for the getVersion() method
328      try:
329        global_revision = os.popen('svnversion -n .').read()
330        global_revision = re.sub(':.*', '', global_revision)
331        global_revision = re.sub('[^0-9]', '', global_revision)
332        if global_revision == '': global_revision='-2'
333      except:
334        global_revision = '-1'
335    env['svn_revision']=global_revision
336    env['buildvars']['svn_revision']=global_revision
337    env.Append(CPPDEFINES=['SVN_VERSION='+global_revision])
338    
339    if IS_WINDOWS:
340        if not env['build_shared']:
341            env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
342            env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
343    
344    # VSL random numbers
345    env['buildvars']['vsl_random']=int(env['vsl_random'])
346    if env['vsl_random']:
347        env.Append(CPPDEFINES = ['MKLRANDOM'])
348    
349  ############ PAPI (optional) ###################################  env['IS_WINDOWS']=IS_WINDOWS
350    
351  # Start a new configure environment that reflects what we've already found  ###################### Copy required environment vars ########################
 conf = Configure(clone_env(env))  
352    
353  if env['usepapi']:  # Windows doesn't use LD_LIBRARY_PATH but PATH instead
354    conf.env.AppendUnique(CPPPATH = [env['papi_path']])  if IS_WINDOWS:
355    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])      LD_LIBRARY_PATH_KEY='PATH'
356    conf.env.AppendUnique(LIBS    = [env['papi_libs']])      env['ENV']['LD_LIBRARY_PATH']=''
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['papi_lib_path'])    # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
   
 if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  
 if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  
   
 # Add PAPI to environment env if it was found  
 if env['usepapi']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['BLOCKPAPI'])  
357  else:  else:
358    conf.Finish()      LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'
359    
360  ############ MKL (optional) ####################################  env['LD_LIBRARY_PATH_KEY']=LD_LIBRARY_PATH_KEY
361    
362  # Start a new configure environment that reflects what we've already found  # the following env variables are exported for the unit tests
 conf = Configure(clone_env(env))  
363    
364  if env['usemkl']:  for key in 'OMP_NUM_THREADS', 'ESCRIPT_NUM_PROCS', 'ESCRIPT_NUM_NODES':
365    conf.env.AppendUnique(CPPPATH = [env['mkl_path']])      try:
366    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])          env['ENV'][key] = os.environ[key]
367    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])      except KeyError:
368    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['mkl_lib_path']) # The wrapper script needs to find these libs          env['ENV'][key] = 1
369    #ensure that our path entries remain at the front  
370    conf.env.PrependENVPath('PYTHONPATH', prefix)  env_export=env['env_export']
371    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME','KMP_MONITOR_STACKSIZE','TMPDIR','TEMP','TMP'])
372    
373  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  for key in set(env_export):
374  if env['usemkl'] and not conf.CheckFunc('pardiso'): env['usemkl'] = 0      try:
375            env['ENV'][key] = os.environ[key]
376        except KeyError:
377  # Add MKL to environment env if it was found          pass
 if env['usemkl']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['MKL'])  
 else:  
   conf.Finish()  
378    
379  ############ UMFPACK (optional) ################################  try:
380        env.PrependENVPath(LD_LIBRARY_PATH_KEY, os.environ[LD_LIBRARY_PATH_KEY])
381    except KeyError:
382        pass
383    
384  # Start a new configure environment that reflects what we've already found  # these shouldn't be needed
385  conf = Configure(clone_env(env))  #for key in 'C_INCLUDE_PATH','CPLUS_INCLUDE_PATH','LIBRARY_PATH':
386    #    try:
387    #        env['ENV'][key] = os.environ[key]
388    #    except KeyError:
389    #        pass
390    
391  if env['useumfpack']:  try:
392    conf.env.AppendUnique(CPPPATH = [env['ufc_path']])      env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
393    conf.env.AppendUnique(CPPPATH = [env['umf_path']])  except KeyError:
394    conf.env.AppendUnique(LIBPATH = [env['umf_lib_path']])      pass
   conf.env.AppendUnique(LIBS    = [env['umf_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['amd_path']])  
   conf.env.AppendUnique(LIBPATH = [env['amd_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['amd_libs']])  
   conf.env.AppendUnique(CPPPATH = [env['blas_path']])  
   conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env['blas_libs']])  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['umf_lib_path']) # The wrapper script needs to find these libs  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['amd_lib_path']) # The wrapper script needs to find these libs  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['blas_lib_path'])    # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
   
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
 if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  
 # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?  
   
 # Add UMFPACK to environment env if it was found  
 if env['useumfpack']:  
   env = conf.Finish()  
   env.Append(CPPDEFINES = ['UMFPACK'])  
 else:  
   conf.Finish()  
395    
396  ############ Silo (optional) ###################################  ######################## Add some custom builders ############################
397    
398  if env['usesilo']:  if env['pythoncmd']=='python':
399    conf = Configure(clone_env(env))      py_builder = Builder(action = build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
   conf.env.AppendUnique(CPPPATH = [env['silo_path']])  
   conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])  
   conf.env.AppendUnique(LIBS = [env['silo_libs']])  
   if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0  
   if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0  
   conf.Finish()  
   
 # Add the path to Silo to environment env if it was found.  
 # Note that we do not add the libs since they are only needed for the  
 # escriptexport library and tools.  
 if env['usesilo']:  
   env.AppendUnique(CPPPATH = [env['silo_path']])  
   env.AppendUnique(LIBPATH = [env['silo_lib_path']])  
   env.Append(CPPDEFINES = ['USE_SILO'])  
   
 ########### Lapack (optional) ##################################  
   
 if env['uselapack']:  
     env.AppendUnique(CPPDEFINES='USE_LAPACK')  
     env.AppendUnique(CPPPATH = [env['lapack_path']])  
     env.AppendUnique(LIBPATH =[env['lapack_lib_path']])  
   
     env.Append(LIBPATH = '/usr/lib/atlas')  
     env.Append(LIBS = [env['lapack_libs']])  
     if env['lapack_type']=='mkl':  
        if not env['usemkl']:  
         env['uselapack']=0  
         print "mkl_lapack requires mkl"  
        else:  
         env.AppendUnique(CPPDEFINES='MKL_LAPACK')  
         
   
 ############ Add the compiler flags ############################  
   
 # Enable debug by choosing either cc_debug or cc_optim  
 if env['usedebug']:  
   env.Append(CCFLAGS        = env['cc_debug'])  
   env.Append(CCFLAGS        = env['omp_debug'])  
400  else:  else:
401    env.Append(CCFLAGS        = env['cc_optim'])      py_builder = Builder(action = env['pythoncmd']+" scripts/py_comp.py $SOURCE $TARGET", suffix = '.pyc', src_suffix = '.py', single_source=True)
   env.Append(CCFLAGS        = env['omp_optim'])  
   
 # Always use cc_flags  
 env.Append(CCFLAGS      = env['cc_flags'])  
 env.Append(LIBS         = [env['omp_libs']])  
   
 ############ Add some custom builders ##########################  
   
 py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  
402  env.Append(BUILDERS = {'PyCompile' : py_builder});  env.Append(BUILDERS = {'PyCompile' : py_builder});
403    
404  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  runUnitTest_builder = Builder(action = runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
405  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
406    
407  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  runPyUnitTest_builder = Builder(action = runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
408  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
409    
410  epstopdfbuilder = Builder(action = scons_extensions.eps2pdf, suffix=".pdf", src_suffix=".eps", single_source=True)  epstopdfbuilder = Builder(action = eps2pdf, suffix='.pdf', src_suffix='.eps', single_source=True)
411  env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});  env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
412    
413  ############ MPI (optional) ####################################  ############################ Dependency checks ###############################
 if not env['usempi']: env['mpi_flavour']='none'  
   
 # Create a modified environment for MPI programs (identical to env if usempi=no)  
 env_mpi = clone_env(env)  
   
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env_mpi))  
   
 if env_mpi['usempi']:  
   VALID_MPIs=[ "MPT", "MPICH", "MPICH2", "OPENMPI", "INTELMPI" ]  
   if not env_mpi['mpi_flavour'] in VALID_MPIs:  
       raise ValueError,"MPI is enabled but mpi_flavour = %s is not a valid key from %s."%( env_mpi['mpi_flavour'],VALID_MPIs)  
   conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])  
   conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['mpi_lib_path']) # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
   
 if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  
 # if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  
   
 # Add MPI to environment env_mpi if it was found  
 if env_mpi['usempi']:  
   env_mpi = conf.Finish()  
   env_mpi.Append(CPPDEFINES = ['PASO_MPI', 'MPI_NO_CPPBIND', env_mpi['MPICH_IGNORE_CXX_SEEK']])  
 else:  
   conf.Finish()  
   
 env['usempi'] = env_mpi['usempi']  
   
 ############ ParMETIS (optional) ###############################  
   
 # Start a new configure environment that reflects what we've already found  
 conf = Configure(clone_env(env_mpi))  
   
 if not env_mpi['usempi']: env_mpi['useparmetis'] = 0  
414    
415  if env_mpi['useparmetis']:  ######## Compiler
416    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])  env=checkCompiler(env)
   conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])  
   conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['parmetis_lib_path'])    # The wrapper script needs to find these libs  
   #ensure that our path entries remain at the front  
   conf.env.PrependENVPath('PYTHONPATH', prefix)  
   conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  
417    
418  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  ######## Python headers & library (required)
419  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  env=checkPython(env)
420    
421  # Add ParMETIS to environment env_mpi if it was found  ######## boost & boost-python (required)
422  if env_mpi['useparmetis']:  env=checkBoost(env)
   env_mpi = conf.Finish()  
   env_mpi.Append(CPPDEFINES = ['USE_PARMETIS'])  
 else:  
   conf.Finish()  
423    
424  env['useparmetis'] = env_mpi['useparmetis']  ######## numpy (required) and numpy headers (optional)
425    env=checkNumpy(env)
426    
427  ############ Summarize our environment #########################  ######## CppUnit (required for tests)
428    env=checkCppUnit(env)
429    
430  print ""  ######## optional python modules (sympy, pyproj)
431  print "Summary of configuration (see ./config.log for information)"  env=checkOptionalModules(env)
 print " Using python libraries"  
 print " Using numpy"  
 print " Using boost"  
 if env['usenetcdf']: print "    Using NetCDF"  
 else: print "   Not using NetCDF"  
 if env['usevtk']: print "   Using VTK"  
 else: print "   Not using VTK"  
 if env['usemkl']: print "   Using MKL"  
 else: print "   Not using MKL"  
 if env['useumfpack']: print "   Using UMFPACK"  
 else: print "   Not using UMFPACK"  
 if env['usesilo']: print "  Using Silo"  
 else: print "   Not using Silo"  
 if env['useopenmp']: print "    Using OpenMP"  
 else: print "   Not using OpenMP"  
 if env['usempi']: print "   Using MPI (flavour = %s)"%env['mpi_flavour']  
 else: print "   Not using MPI"  
 if env['useparmetis']: print "  Using ParMETIS"  
 else: print "   Not using ParMETIS (requires MPI)"  
 if env['usepapi']: print "  Using PAPI"  
 else: print "   Not using PAPI"  
 if env['uselapack']: print "    Using Lapack"  
 else: print "   Not using Lapack"  
 if env['usedebug']: print " Compiling for debug"  
 else: print "   Not compiling for debug"  
 print " Installing in", prefix  
 if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"  
 else: print "   Not treating warnings as errors"  
 print ""  
   
 ############ Delete option-dependent files #####################  
   
 Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.debug")))  
 Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.mpi")))  
 Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.openmp")))  
 Execute(Delete(os.path.join(env['libinstall'],"pyversion")))  
 Execute(Delete(os.path.join(env['libinstall'],"buildvars")))  
 if not env['usempi']: Execute(Delete(os.path.join(env['libinstall'],"pythonMPI")))  
432    
433    ######## optional dependencies (netCDF, PAPI, MKL, UMFPACK, Lapack, Silo, ...)
434    env=checkOptionalLibraries(env)
435    
436  ############ Build the subdirectories ##########################  ######## PDFLaTeX (for documentation)
437    env=checkPDFLatex(env)
438    
439  if env['usepedantic']: env_mpi.Append(CCFLAGS = pedantic)  # keep some of our install paths first in the list for the unit tests
440    env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
441    env.PrependENVPath('PYTHONPATH', prefix)
442    env['ENV']['ESCRIPT_ROOT'] = prefix
443    
444    if not env['verbose']:
445        env['CXXCOMSTR'] = "Compiling $TARGET"
446        env['SHCXXCOMSTR'] = "Compiling $TARGET"
447        env['ARCOMSTR'] = "Linking $TARGET"
448        env['LINKCOMSTR'] = "Linking $TARGET"
449        env['SHLINKCOMSTR'] = "Linking $TARGET"
450        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
451        env['BIBTEXCOMSTR'] = "Generating bibliography $TARGET"
452        env['MAKEINDEXCOMSTR'] = "Generating index $TARGET"
453        env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
454        #Progress(['Checking -\r', 'Checking \\\r', 'Checking |\r', 'Checking /\r'], interval=17)
455    
456    ####################### Configure the subdirectories #########################
457    
458    # remove obsolete files
459    if not env['usempi']:
460        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPI')))
461        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPIredirect')))
462    
463  from grouptest import *  from grouptest import *
   
464  TestGroups=[]  TestGroups=[]
465    
466  dodgy_env=clone_env(env_mpi)    # Environment without pedantic options  # keep an environment without warnings-as-errors
467    dodgy_env=env.Clone()
 ############ Now we switch on Warnings as errors ###############  
   
 #this needs to be done after configuration because the scons test files have warnings in them  
   
 if ((fatalwarning != "") and (env['usewarnings'])):  
   env.Append(CCFLAGS        = fatalwarning)  
   env_mpi.Append(CCFLAGS        = fatalwarning)  
468    
469    # now add warnings-as-errors flags. This needs to be done after configuration
470    # because the scons test files have warnings in them
471    if ((fatalwarning != '') and (env['werror'])):
472        env.Append(CCFLAGS = fatalwarning)
473    
474  Export(  Export(
475    ["env",    ['env',
476     "env_mpi",     'dodgy_env',
477     "clone_env",     'IS_WINDOWS',
478     "dodgy_env",     'TestGroups'
479     "IS_WINDOWS_PLATFORM",    ]
480     "TestGroups"  )
    ]  
   )  
   
 env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  
 env.SConscript(dirs = ['tools/escriptconvert'], build_dir='build/$PLATFORM/tools/escriptconvert', duplicate=0)  
 env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  
 env.SConscript(dirs = ['dataexporter/src'], build_dir='build/$PLATFORM/dataexporter', duplicate=0)  
 env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  
 env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  
 env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  
 env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)  
 env.SConscript(dirs = ['doc'], build_dir='build/$PLATFORM/doc', duplicate=0)  
 env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  
 env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  
 env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  
 env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)  
 env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)  
   
   
 ############ Remember what optimizations we used ###############  
   
 remember_list = []  
   
 if env['usedebug']:  
   remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.debug"), None, Touch('$TARGET'))  
   
 if env['usempi']:  
   remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.mpi"), None, Touch('$TARGET'))  
   
 if env['useopenmp']:  
   remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.openmp"), None, Touch('$TARGET'))  
481    
482  env.Alias('remember_options', remember_list)  env.SConscript(dirs = ['tools/escriptconvert'], variant_dir='$BUILD_DIR/$PLATFORM/tools/escriptconvert', duplicate=0)
483    env.SConscript(dirs = ['paso/src'], variant_dir='$BUILD_DIR/$PLATFORM/paso', duplicate=0)
484    env.SConscript(dirs = ['weipa/src'], variant_dir='$BUILD_DIR/$PLATFORM/weipa', duplicate=0)
485    env.SConscript(dirs = ['escript/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/escript', duplicate=0)
486    
487    #This will pull in the escriptcore/py_src and escriptcore/test
488    env.SConscript(dirs = ['escriptcore/src'], variant_dir='$BUILD_DIR/$PLATFORM/escriptcore', duplicate=0)
489    #env.SConscript(dirs = ['escript/test'], variant_dir='$BUILD_DIR/$PLATFORM/escript/test', duplicate=0)
490    env.SConscript(dirs = ['esysUtils/src'], variant_dir='$BUILD_DIR/$PLATFORM/esysUtils', duplicate=0)
491    env.SConscript(dirs = ['pasowrap/src'], variant_dir='$BUILD_DIR/$PLATFORM/pasowrap', duplicate=0)
492    env.SConscript(dirs = ['dudley/src'], variant_dir='$BUILD_DIR/$PLATFORM/dudley', duplicate=0)
493    env.SConscript(dirs = ['finley/src'], variant_dir='$BUILD_DIR/$PLATFORM/finley', duplicate=0)
494    env.SConscript(dirs = ['ripley/src'], variant_dir='$BUILD_DIR/$PLATFORM/ripley', duplicate=0)
495    env.SConscript(dirs = ['downunder/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/downunder', duplicate=0)
496    env.SConscript(dirs = ['modellib/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/modellib', duplicate=0)
497    env.SConscript(dirs = ['pycad/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pycad', duplicate=0)
498    env.SConscript(dirs = ['pythonMPI/src'], variant_dir='$BUILD_DIR/$PLATFORM/pythonMPI', duplicate=0)
499    env.SConscript(dirs = ['doc'], variant_dir='$BUILD_DIR/$PLATFORM/doc', duplicate=0)
500    env.SConscript(dirs = ['paso/profiling'], variant_dir='$BUILD_DIR/$PLATFORM/paso/profiling', duplicate=0)
501    
502    
503  ############### Record python interpreter version ##############  ######################## Populate the buildvars file #########################
504    
505  if not IS_WINDOWS_PLATFORM:  write_buildvars(env)
506    
507    versionstring="Python "+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])  ################### Targets to build and install libraries ###################
   if sys.version_info[4] >0 : versionstring+="rc%s"%sys.version_info[4]  
   os.system("echo "+versionstring+" > "+os.path.join(env['libinstall'],"pyversion"))  
508    
509  ############## Populate the buildvars file #####################  target_init = env.Command(os.path.join(env['pyinstall'],'__init__.py'), None, Touch('$TARGET'))
510    env.Alias('target_init', [target_init])
511    # delete buildvars upon cleanup
512    env.Clean('target_init', os.path.join(env['libinstall'], 'buildvars'))
513    
514  buildvars=open(os.path.join(env['libinstall'],'buildvars'),'w')  # The headers have to be installed prior to build in order to satisfy
515  buildvars.write('python='+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+'\n')  # #include <paso/Common.h>
516    env.Alias('build_esysUtils', ['install_esysUtils_headers', 'build_esysUtils_lib'])
517  # Find the boost version by extracting it from version.hpp  env.Alias('install_esysUtils', ['build_esysUtils', 'install_esysUtils_lib'])
 boosthpp=open(os.path.join(env['boost_path'],'boost','version.hpp'))  
 boostversion='unknown'  
 try:  
     for line in boosthpp:  
         ver=re.match(r'#define BOOST_VERSION (\d+)',line)  
         if ver:  
             boostversion=ver.group(1)  
 except StopIteration:  
     pass  
 buildvars.write("boost="+boostversion+"\n")  
 buildvars.write("svn_revision="+str(global_revision)+"\n")  
 out="usedebug="  
 if env['usedebug']:  
     out+="y"  
 else:  
     out+="n"  
 out+="\nusempi="  
 if env['usempi']:  
     out+="y"  
 else:  
     out+="n"  
 out+="\nuseopenmp="  
 if env['useopenmp']:  
     out+="y"  
 else:  
     out+="n"  
 buildvars.write(out+"\n")  
 buildvars.write("mpi_flavour="+env['mpi_flavour']+'\n')  
 out="lapack="  
 if env['uselapack']:  
    out+="y"  
 else:  
    out+="n"  
 out+="\nsilo="  
 if env['usesilo']:  
    out+="y"  
 else:  
    out+="n"  
 buildvars.write(out+"\n")  
 buildvars.close()  
518    
519    env.Alias('build_paso', ['install_paso_headers', 'build_paso_lib'])
520    env.Alias('install_paso', ['build_paso', 'install_paso_lib'])
521    
522  ############ Targets to build and install libraries ############  env.Alias('build_escript', ['install_escript_headers', 'build_escript_lib', 'build_escriptcpp_lib'])
523    env.Alias('install_escript', ['build_escript', 'install_escript_lib', 'install_escriptcpp_lib', 'install_escriptcore_py', 'install_escript_py'])
524    
525  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  env.Alias('build_pasowrap', ['install_pasowrap_headers', 'build_pasowrap_lib', 'build_pasowrapcpp_lib'])
526  env.Alias('target_init', [target_init])  env.Alias('install_pasowrap', ['build_pasowrap', 'install_pasowrap_lib', 'install_pasowrapcpp_lib', 'install_pasowrap_py'])
527    
528  # The headers have to be installed prior to build in order to satisfy #include <paso/Common.h>  env.Alias('build_dudley', ['install_dudley_headers', 'build_dudley_lib', 'build_dudleycpp_lib'])
529  env.Alias('build_esysUtils', ['target_install_esysUtils_headers', 'target_esysUtils_a'])  env.Alias('install_dudley', ['build_dudley', 'install_dudley_lib', 'install_dudleycpp_lib', 'install_dudley_py'])
 env.Alias('install_esysUtils', ['build_esysUtils', 'target_install_esysUtils_a'])  
530    
531  env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])  env.Alias('build_finley', ['install_finley_headers', 'build_finley_lib', 'build_finleycpp_lib'])
532  env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])  env.Alias('install_finley', ['build_finley', 'install_finley_lib', 'install_finleycpp_lib', 'install_finley_py'])
533    
534  env.Alias('build_dataexporter', ['target_install_escriptexport_headers', 'target_escriptexport_so', 'target_escriptexportcpp_so'])  env.Alias('build_ripley', ['install_ripley_headers', 'build_ripley_lib', 'build_ripleycpp_lib'])
535  env.Alias('install_dataexporter', ['build_dataexporter', 'target_install_escriptexport_so', 'target_install_escriptexportcpp_so', 'target_install_dataexporter_py'])  env.Alias('install_ripley', ['build_ripley', 'install_ripley_lib', 'install_ripleycpp_lib', 'install_ripley_py'])
536    
537  env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])  env.Alias('build_weipa', ['install_weipa_headers', 'build_weipa_lib', 'build_weipacpp_lib'])
538  env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])  env.Alias('install_weipa', ['build_weipa', 'install_weipa_lib', 'install_weipacpp_lib', 'install_weipa_py'])
539    
540  env.Alias('build_finley', ['target_install_finley_headers', 'target_finley_so', 'target_finleycpp_so'])  env.Alias('build_escriptreader', ['install_weipa_headers', 'build_escriptreader_lib'])
541  env.Alias('install_finley', ['build_finley', 'target_install_finley_so', 'target_install_finleycpp_so', 'target_install_finley_py'])  env.Alias('install_escriptreader', ['build_escriptreader', 'install_escriptreader_lib'])
542    
543  # Now gather all the above into a couple easy targets: build_all and install_all  # Now gather all the above into some easy targets: build_all and install_all
544  build_all_list = []  build_all_list = []
545  build_all_list += ['build_esysUtils']  build_all_list += ['build_esysUtils']
546  build_all_list += ['build_paso']  build_all_list += ['build_paso']
 build_all_list += ['build_dataexporter']  
547  build_all_list += ['build_escript']  build_all_list += ['build_escript']
548    build_all_list += ['build_pasowrap']
549    build_all_list += ['build_dudley']
550  build_all_list += ['build_finley']  build_all_list += ['build_finley']
551  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  build_all_list += ['build_ripley']
552  #if not IS_WINDOWS_PLATFORM:    build_all_list += ['target_escript_wrapper']  build_all_list += ['build_weipa']
553  if env['usesilo']:  build_all_list += ['target_escriptconvert']  if not IS_WINDOWS: build_all_list += ['build_escriptreader']
554    if env['usempi']:   build_all_list += ['build_pythonMPI']
555    build_all_list += ['build_escriptconvert']
556  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
557    
558  install_all_list = []  install_all_list = []
559  install_all_list += ['target_init']  install_all_list += ['target_init']
560  install_all_list += ['install_esysUtils']  install_all_list += ['install_esysUtils']
561  install_all_list += ['install_paso']  install_all_list += ['install_paso']
 install_all_list += ['install_dataexporter']  
562  install_all_list += ['install_escript']  install_all_list += ['install_escript']
563    install_all_list += ['install_pasowrap']
564    install_all_list += ['install_dudley']
565  install_all_list += ['install_finley']  install_all_list += ['install_finley']
566  install_all_list += ['target_install_pyvisi_py']  install_all_list += ['install_ripley']
567  install_all_list += ['target_install_modellib_py']  install_all_list += ['install_weipa']
568  install_all_list += ['target_install_pycad_py']  if not IS_WINDOWS: install_all_list += ['install_escriptreader']
569  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  install_all_list += ['install_downunder_py']
570  #if not IS_WINDOWS_PLATFORM:    install_all_list += ['target_install_escript_wrapper']  install_all_list += ['install_modellib_py']
571  if env['usesilo']:  install_all_list += ['target_install_escriptconvert']  install_all_list += ['install_pycad_py']
572  install_all_list += ['remember_options']  if env['usempi']:   install_all_list += ['install_pythonMPI']
573    install_all_list += ['install_escriptconvert']
574  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
575    
576  # Default target is install  # Default target is install
577  env.Default('install_all')  env.Default('install_all')
578    
579  ############ Targets to build and run the test suite ###########  ################## Targets to build and run the test suite ###################
580    
581  env.Alias('build_cppunittest', ['target_install_cppunittest_headers', 'target_cppunittest_a'])  if not env['cppunit']:
582  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])      test_msg = env.Command('.dummy.', None, '@echo "Cannot run C++ unit tests, CppUnit not found!";exit 1')
583  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])      env.Alias('run_tests', test_msg)
584  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])      env.Alias('build_tests', '')
585    env.Alias('run_tests', ['install_all'])
586    env.Alias('all_tests', ['install_all', 'run_tests', 'py_tests'])
587  env.Alias('build_full',['install_all','build_tests','build_py_tests'])  env.Alias('build_full',['install_all','build_tests','build_py_tests'])
588    env.Alias('build_PasoTests','$BUILD_DIR/$PLATFORM/paso/profiling/PasoTests')
589    
590    ##################### Targets to build the documentation #####################
591    
592  ############ Targets to build the documentation ################  env.Alias('pdfdocs',['user_pdf', 'install_pdf', 'cookbook_pdf', 'inversion_pdf'])
593    env.Alias('basedocs', ['pdfdocs','examples_tarfile', 'examples_zipfile', 'api_doxygen'])
594  env.Alias('api_epydoc','install_all')  env.Alias('docs', ['basedocs', 'sphinxdoc'])
595    env.Alias('release_prep', ['docs', 'install_all'])
596  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html','install_pdf'])  env.Alias('release_prep_old', ['basedocs', 'api_epydoc', 'install_all'])
597    
598  build_platform=os.name  # The test scripts are always generated, this target allows us to
599    # generate the testscripts without doing a full build
600  if not IS_WINDOWS_PLATFORM:  env.Alias('testscripts',[])
601     try:  
602      utest=open("utest.sh","w")  if not IS_WINDOWS:
603      #Sometimes Mac python says it is posix      generateTestScripts(env, TestGroups)
604      if (build_platform=='posix') and platform.system()=="Darwin":  
605          build_platform='darwin'  
606      utest.write(GroupTest.makeHeader(build_platform))  
607      for tests in TestGroups:  ######################## Summarize our environment ###########################
608          utest.write(tests.makeString())  def print_summary():
609      utest.close()      print("")
610      os.chmod("utest.sh",stat.S_IRWXU|stat.S_IRGRP|stat.S_IXGRP|stat.S_IROTH|stat.S_IXOTH)      print("*** Config Summary (see config.log and <prefix>/lib/buildvars for details) ***")
611      print "utest.sh written"      print("Escript/Finley revision %s"%global_revision)
612     except IOError:      print("  Install prefix:  %s"%env['prefix'])
613      print "Error attempting to write unittests file."      print("          Python:  %s"%sysconfig.PREFIX)
614      sys.exit(1)      print("           boost:  %s"%env['boost_prefix'])
615        if env['numpy_h']:
616     #Make sure that the escript wrapper is in place          print("           numpy:  YES (with headers)")
617     if not os.path.isfile(os.path.join(env['bininstall'],'escript')):      else:
618         print "Copying escript wrapper"          print("           numpy:  YES (without headers)")
619         shutil.copy("bin/escript",os.path.join(env['bininstall'],'escript'))      if env['usempi']:
620            print("             MPI:  YES (flavour: %s)"%env['mpi'])
621        else:
622            print("             MPI:  DISABLED")
623        if env['uselapack']:
624            print("          LAPACK:  YES (flavour: %s)"%env['lapack'])
625        else:
626            print("          LAPACK:  DISABLED")
627        d_list=[]
628        e_list=[]
629        for i in 'debug','openmp','boomeramg','gdal','mkl','netcdf','papi','parmetis','pyproj','scipy','silo','sympy','umfpack','visit','vsl_random':
630            if env[i]: e_list.append(i)
631            else: d_list.append(i)
632        for i in e_list:
633            print("%16s:  YES"%i)
634        for i in d_list:
635            print("%16s:  DISABLED"%i)
636        if env['cppunit']:
637            print("         CppUnit:  FOUND")
638        else:
639            print("         CppUnit:  NOT FOUND")
640        if env['gmsh']=='m':
641            print("            gmsh:  FOUND, MPI-ENABLED")
642        elif env['gmsh']=='s':
643            print("            gmsh:  FOUND")
644        else:
645            print("            gmsh:  NOT FOUND")
646    
647        if ((fatalwarning != '') and (env['werror'])):
648            print("  Treating warnings as errors")
649        else:
650            print("  NOT treating warnings as errors")
651        print("")
652        for w in env['warnings']:
653            print("WARNING: %s"%w)
654    
655  ############ Targets to build PasoTests suite ################  atexit.register(print_summary)
656    
 env.Alias('build_PasoTests','build/'+build_platform+'/paso/profiling/PasoTests')  

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