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revision 1789 by phornby, Mon Sep 15 08:34:44 2008 UTC revision 2338 by jfenwick, Fri Mar 27 05:01:49 2009 UTC
# Line 1  Line 1 
1  #         Copyright 2006 by ACcESS MNRF  
2    ########################################################
3    #
4    # Copyright (c) 2003-2008 by University of Queensland
5    # Earth Systems Science Computational Center (ESSCC)
6    # http://www.uq.edu.au/esscc
7    #
8    # Primary Business: Queensland, Australia
9    # Licensed under the Open Software License version 3.0
10    # http://www.opensource.org/licenses/osl-3.0.php
11  #  #
12  #              http://www.access.edu.au  ########################################################
13  #       Primary Business: Queensland, Australia  
 #  Licensed under the Open Software License version 3.0  
 #     http://www.opensource.org/licenses/osl-3.0.php  
14    
15  EnsureSConsVersion(0,96,91)  EnsureSConsVersion(0,96,91)
16  EnsurePythonVersion(2,3)  EnsurePythonVersion(2,3)
17    
18  import sys, os, re, socket  import sys, os, re, socket, platform, stat
19    
20  # Add our extensions  # Add our extensions
21  if os.path.isdir('scons'): sys.path.append('scons')  if os.path.isdir('scons'): sys.path.append('scons')
# Line 30  prefix = ARGUMENTS.get('prefix', Dir('#. Line 37  prefix = ARGUMENTS.get('prefix', Dir('#.
37  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])
38  tmp = os.path.join("scons",hostname+"_options.py")  tmp = os.path.join("scons",hostname+"_options.py")
39  options_file = ARGUMENTS.get('options_file', tmp)  options_file = ARGUMENTS.get('options_file', tmp)
40  if not os.path.isfile(options_file): options_file = False  if not os.path.isfile(options_file):
41  else: print "Options file is", options_file    options_file = False
42      print "Options file not found (expected '%s')" % tmp
43    else:
44      print "Options file is", options_file
45    
46  # Load options file and command-line arguments  # Load options file and command-line arguments
47  opts = Options(options_file, ARGUMENTS)  opts = Options(options_file, ARGUMENTS)
# Line 50  opts.AddOptions( Line 60  opts.AddOptions(
60    BoolOption('usedebug', 'Do you want a debug build?', 'no'),    BoolOption('usedebug', 'Do you want a debug build?', 'no'),
61    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),
62    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),
63      ('win_cc_name', 'windows C compiler name if needed', 'msvc'),
64    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below
65    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),
66    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),
# Line 61  opts.AddOptions( Line 72  opts.AddOptions(
72    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
73    ('sys_libs', 'System libraries to link with', []),    ('sys_libs', 'System libraries to link with', []),
74    ('ar_flags', 'Static library archiver flags to use', ''),    ('ar_flags', 'Static library archiver flags to use', ''),
75    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'yes'),    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'no'),
76    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'yes'),    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),
77      BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),
78      ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),
79  # Python  # Python
80    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),
81    ('python_lib_path', 'Path to Python libs', usr_lib),    ('python_lib_path', 'Path to Python libs', usr_lib),
# Line 85  opts.AddOptions( Line 98  opts.AddOptions(
98    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),
99    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),
100    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),
101      ('mpi_flavour','Type of MPI execution environment','none'),
102  # ParMETIS  # ParMETIS
103    BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),    BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),
104    ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),    ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),
# Line 107  opts.AddOptions( Line 121  opts.AddOptions(
121    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),
122    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),
123    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),
124    # Silo
125      BoolOption('usesilo', 'switch on/off the usage of Silo', 'yes'),
126      ('silo_path', 'Path to Silo includes', '/usr/include'),
127      ('silo_lib_path', 'Path to Silo libs', usr_lib),
128      ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
129  # AMD (used by UMFPACK)  # AMD (used by UMFPACK)
130    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),
131    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('amd_lib_path', 'Path to AMD libs', usr_lib),
# Line 114  opts.AddOptions( Line 133  opts.AddOptions(
133  # BLAS (used by UMFPACK)  # BLAS (used by UMFPACK)
134    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),
135    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    ('blas_lib_path', 'Path to BLAS libs', usr_lib),
136    ('blas_libs', 'BLAS libraries to link with', ['blas'])    ('blas_libs', 'BLAS libraries to link with', ['blas']),
137    # An option for specifying the compiler tools set (see windows branch).
138      ('tools_names', 'allow control over the tools in the env setup', ['intelc']),
139    # finer control over library building, intel aggressive global optimisation
140    # works with dynamic libraries on windows.
141      ('share_esysUtils', 'control static or dynamic esysUtils lib', False),
142      ('share_paso', 'control static or dynamic paso lib', False)
143  )  )
144    
145  ############ Specify which compilers to use ####################  ############ Specify which compilers to use ####################
# Line 123  opts.AddOptions( Line 148  opts.AddOptions(
148  # failing to find the compilers.  This warning can be safely ignored.  # failing to find the compilers.  This warning can be safely ignored.
149    
150  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
151        env = Environment(tools = ['default', 'msvc'], options = opts)        env = Environment(options = opts)
152          env = Environment(tools = ['default'] + env['tools_names'],
153                            options = opts)
154  else:  else:
155     if socket.gethostname().split('.')[0] == 'service0':     if socket.gethostname().split('.')[0] == 'service0':
156        env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default', 'intelc'], options = opts)
# Line 144  if env['useMPI']: env['usempi'] = 1 Line 171  if env['useMPI']: env['usempi'] = 1
171  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)
172  # For both C and C++ you get: cc_flags and either the optim flags or debug flags  # For both C and C++ you get: cc_flags and either the optim flags or debug flags
173    
174    sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.
175    
176  if env["CC"] == "icc":  if env["CC"] == "icc":
177    # Intel compilers    # Intel compilers
178    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
179    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"
180    cc_debug      = "-g -O0 -UDOASSERT -DDOPROF -DBOUNDS_CHECK"    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
181    omp_optim     = "-openmp -openmp_report0"    omp_optim     = "-openmp -openmp_report0"
182    omp_debug     = "-openmp -openmp_report0"    omp_debug     = "-openmp -openmp_report0"
183    omp_libs      = ['guide', 'pthread']    omp_libs      = ['guide', 'pthread']
184    pedantic      = ""    pedantic      = ""
185      fatalwarning      = ""        # Switch to turn warnings into errors
186      sysheaderopt      = ""
187  elif env["CC"] == "gcc":  elif env["CC"] == "gcc":
188    # GNU C on any system    # GNU C on any system
189    cc_flags      = "-fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER"    cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"
190    #the long long warning occurs on the Mac
191    cc_optim      = "-O3"    cc_optim      = "-O3"
192    cc_debug      = "-g -O0 -UDOASSERT -DDOPROF -DBOUNDS_CHECK"    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
193    omp_optim     = ""    omp_optim     = "-fopenmp"
194    omp_debug     = ""    omp_debug     = "-fopenmp"
195    omp_libs      = []    omp_libs      = ['gomp']
196    pedantic      = "-pedantic-errors -Wno-long-long"    pedantic      = "-pedantic-errors -Wno-long-long"
197      fatalwarning      = "-Werror"
198      sysheaderopt      = "-isystem "
199  elif env["CC"] == "cl":  elif env["CC"] == "cl":
200    # Microsoft Visual C on Windows    # Microsoft Visual C on Windows
201    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"
# Line 171  elif env["CC"] == "cl": Line 205  elif env["CC"] == "cl":
205    omp_debug     = ""    omp_debug     = ""
206    omp_libs      = []    omp_libs      = []
207    pedantic      = ""    pedantic      = ""
208      fatalwarning      = ""
209      sysheaderopt      = ""
210    elif env["CC"] == "icl":
211      # intel C on Windows, see windows_intelc_options.py for a start
212      pedantic      = ""
213      fatalwarning      = ""
214      sysheaderopt      = ""
215    
216    
217  # If not specified in hostname_options.py then set them here  # If not specified in hostname_options.py then set them here
218  if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags
# Line 180  if env["omp_optim"]    == "-DEFAULT_4": env Line 222  if env["omp_optim"]    == "-DEFAULT_4": env
222  if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug
223  if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs
224    
225    #set up the autolazy values
226    if env['forcelazy']    != "leave_alone":
227      if env['forcelazy'] == 'on':
228        env.Append(CPPDEFINES='FAUTOLAZYON')
229      else:
230         if env['forcelazy'] == 'off':
231        env.Append(CPPDEFINES='FAUTOLAZYOFF')
232    
233  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty
234  if not env["useopenmp"]:  if not env["useopenmp"]:
235    env['omp_optim'] = ""    env['omp_optim'] = ""
# Line 240  env.Append(CPPPATH     = [Dir('include')]) Line 290  env.Append(CPPPATH     = [Dir('include')])
290  # Add cc option -L<Escript>/trunk/lib  # Add cc option -L<Escript>/trunk/lib
291  env.Append(LIBPATH      = [Dir(env['libinstall'])])  env.Append(LIBPATH      = [Dir(env['libinstall'])])
292    
 env.Append(CPPDEFINES = ['ESCRIPT_EXPORTS', 'FINLEY_EXPORTS'])  
   
293  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])
294  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])
295    
# Line 249  if env['usepedantic']: env.Append(CCFLAG Line 297  if env['usepedantic']: env.Append(CCFLAG
297    
298  # MS Windows  # MS Windows
299  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
300    env.PrependENVPath('PATH',    [env['boost_lib_path']])    env.AppendENVPath('PATH', [env['boost_lib_path']])
301    env.PrependENVPath('PATH',    [env['libinstall']])    env.AppendENVPath('PATH', [env['libinstall']])
302      if not env['share_esysUtils'] :
303        env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
304      if not env['share_paso'] :
305        env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
306    
307    if env['usenetcdf']:    if env['usenetcdf']:
308      env.PrependENVPath('PATH',  [env['netCDF_lib_path']])      env.AppendENVPath('PATH',   [env['netCDF_lib_path']])
309    
310  env.Append(ARFLAGS = env['ar_flags'])  env.Append(ARFLAGS = env['ar_flags'])
311    
# Line 281  conf = Configure(clone_env(env)) Line 334  conf = Configure(clone_env(env))
334    
335  # Test that the compiler is working  # Test that the compiler is working
336  if not conf.CheckFunc('printf'):  if not conf.CheckFunc('printf'):
337    print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])     print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])
338    sys.exit(1)     sys.exit(1)
339    
340  if conf.CheckFunc('gethostname'):  if conf.CheckFunc('gethostname'):
341    conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])    conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])
342    
343  ############ python libraries (required) #######################  ############ python libraries (required) #######################
344    
345  conf.env.AppendUnique(CPPPATH       = [env['python_path']])  
346    if not sysheaderopt =="":
347      conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])
348    else:
349      conf.env.AppendUnique(CPPPATH     = [env['python_path']])
350    
351  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])
352  conf.env.AppendUnique(LIBS      = [env['python_libs']])  conf.env.AppendUnique(LIBS      = [env['python_libs']])
353    
354  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs
355    conf.env.PrependENVPath('PYTHONPATH', prefix)
356    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
357    
358  if not conf.CheckCHeader('Python.h'):  if not conf.CheckCHeader('Python.h'):
359    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])
360    sys.exit(1)    sys.exit(1)
361  if not conf.CheckFunc('Py_Main'):  if not conf.CheckFunc('Py_Exit'):
362    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])
363    sys.exit(1)    sys.exit(1)
364    
365  ############ boost (required) ##################################  ############ boost (required) ##################################
366    
367  conf.env.AppendUnique(CPPPATH       = [env['boost_path']])  if not sysheaderopt =="":
368    # This is required because we can't -isystem /usr/system because it breaks std includes
369      if os.path.normpath(env['boost_path']) =="/usr/include":
370        conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))
371      else:
372        conf.env.Append(CCFLAGS=sysheaderopt+env['boost_path'])
373    else:
374      conf.env.AppendUnique(CPPPATH     = [env['boost_path']])
375    
376  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])
377  conf.env.AppendUnique(LIBS      = [env['boost_libs']])  conf.env.AppendUnique(LIBS      = [env['boost_libs']])
378    
379  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs
380    #ensure that our path entries remain at the front
381    conf.env.PrependENVPath('PYTHONPATH', prefix)
382    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
383    
384  if not conf.CheckCXXHeader('boost/python.hpp'):  if not conf.CheckCXXHeader('boost/python.hpp'):
385    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])
386    sys.exit(1)    sys.exit(1)
387    
388  if not conf.CheckFunc('PyObject_SetAttr'):  if not conf.CheckFunc('PyObject_SetAttr'):
389    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])
390    sys.exit(1)    sys.exit(1)
# Line 342  if env['usenetcdf']: Line 414  if env['usenetcdf']:
414    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])
415    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])
416    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs
417      #ensure that our path entries remain at the front
418      conf.env.PrependENVPath('PYTHONPATH', prefix)
419      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
420    
421  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0
422  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0
# Line 363  if env['usepapi']: Line 438  if env['usepapi']:
438    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])
439    conf.env.AppendUnique(LIBS    = [env['papi_libs']])    conf.env.AppendUnique(LIBS    = [env['papi_libs']])
440    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs
441      #ensure that our path entries remain at the front
442      conf.env.PrependENVPath('PYTHONPATH', prefix)
443      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
444    
445  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0
446  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0
# Line 384  if env['usemkl']: Line 462  if env['usemkl']:
462    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])
463    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])
464    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs
465      #ensure that our path entries remain at the front
466      conf.env.PrependENVPath('PYTHONPATH', prefix)
467      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
468    
469  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0
470  if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0
# Line 414  if env['useumfpack']: Line 495  if env['useumfpack']:
495    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs
496    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs
497    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs
498      #ensure that our path entries remain at the front
499      conf.env.PrependENVPath('PYTHONPATH', prefix)
500      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
501    
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
502  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0
503    if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0
504    # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?
505    
506  # Add UMFPACK to environment env if it was found  # Add UMFPACK to environment env if it was found
507  if env['useumfpack']:  if env['useumfpack']:
# Line 425  if env['useumfpack']: Line 510  if env['useumfpack']:
510  else:  else:
511    conf.Finish()    conf.Finish()
512    
513    ############ Silo (optional) ###################################
514    
515    if env['usesilo']:
516      conf = Configure(clone_env(env))
517      conf.env.AppendUnique(CPPPATH = [env['silo_path']])
518      conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])
519      conf.env.AppendUnique(LIBS = [env['silo_libs']])
520      if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0
521      if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0
522      conf.Finish()
523    
524    # Add the path to Silo to environment env if it was found.
525    # Note that we do not add the libs since they are only needed for the
526    # escriptreader library and tools.
527    if env['usesilo']:
528      env.AppendUnique(CPPPATH = [env['silo_path']])
529      env.AppendUnique(LIBPATH = [env['silo_lib_path']])
530      env.Append(CPPDEFINES = ['HAVE_SILO'])
531    
532  ############ Add the compiler flags ############################  ############ Add the compiler flags ############################
533    
534  # Enable debug by choosing either cc_debug or cc_optim  # Enable debug by choosing either cc_debug or cc_optim
# Line 439  else: Line 543  else:
543  env.Append(CCFLAGS      = env['cc_flags'])  env.Append(CCFLAGS      = env['cc_flags'])
544  env.Append(LIBS         = [env['omp_libs']])  env.Append(LIBS         = [env['omp_libs']])
545    
546    
547    ############ Add some custom builders ##########################
548    
549    py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
550    env.Append(BUILDERS = {'PyCompile' : py_builder});
551    
552    runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
553    env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
554    
555    runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
556    env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
557    
558  ############ MPI (optional) ####################################  ############ MPI (optional) ####################################
559    
560  # Create a modified environment for MPI programs (identical to env if usempi=no)  # Create a modified environment for MPI programs (identical to env if usempi=no)
# Line 452  if env_mpi['usempi']: Line 568  if env_mpi['usempi']:
568    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])
569    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])
570    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs
571      #ensure that our path entries remain at the front
572      conf.env.PrependENVPath('PYTHONPATH', prefix)
573      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
574    
575  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0
576  if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  # if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0
577    
578  # Add MPI to environment env_mpi if it was found  # Add MPI to environment env_mpi if it was found
579  if env_mpi['usempi']:  if env_mpi['usempi']:
# Line 477  if env_mpi['useparmetis']: Line 596  if env_mpi['useparmetis']:
596    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])
597    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])
598    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs
599      #ensure that our path entries remain at the front
600      conf.env.PrependENVPath('PYTHONPATH', prefix)
601      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
602    
603  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0
604  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0
# Line 490  else: Line 612  else:
612    
613  env['useparmetis'] = env_mpi['useparmetis']  env['useparmetis'] = env_mpi['useparmetis']
614    
615    ############ Now we switch on Warnings as errors ###############
616    
617    #this needs to be done after configuration because the scons test files have warnings in them
618    
619    if ((fatalwarning != "") and (env['usewarnings'])):
620      env.Append(CCFLAGS        = fatalwarning)
621      env_mpi.Append(CCFLAGS        = fatalwarning)
622    
623  ############ Summarize our environment #########################  ############ Summarize our environment #########################
624    
625  print ""  print ""
# Line 505  if env['usemkl']: print "  Using MKL" Line 635  if env['usemkl']: print "  Using MKL"
635  else: print "   Not using MKL"  else: print "   Not using MKL"
636  if env['useumfpack']: print "   Using UMFPACK"  if env['useumfpack']: print "   Using UMFPACK"
637  else: print "   Not using UMFPACK"  else: print "   Not using UMFPACK"
638    if env['usesilo']: print "  Using Silo"
639    else: print "   Not using Silo"
640  if env['useopenmp']: print "    Using OpenMP"  if env['useopenmp']: print "    Using OpenMP"
641  else: print "   Not using OpenMP"  else: print "   Not using OpenMP"
642  if env['usempi']: print "   Using MPI"  if env['usempi']: print "   Using MPI"
# Line 516  else: print "  Not using PAPI" Line 648  else: print "  Not using PAPI"
648  if env['usedebug']: print " Compiling for debug"  if env['usedebug']: print " Compiling for debug"
649  else: print "   Not compiling for debug"  else: print "   Not compiling for debug"
650  print " Installing in", prefix  print " Installing in", prefix
651    if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"
652    else: print "   Not treating warnings as errors"
653  print ""  print ""
654    
655  ############ Delete option-dependent files #####################  ############ Delete option-dependent files #####################
656    
657  Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.debug")))
658  Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.mpi")))
659  Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.openmp")))
660  if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))  Execute(Delete(os.path.join(env['libinstall'],"pyversion")))
661    Execute(Delete(os.path.join(env['libinstall'],"buildvars")))
662    if not env['usempi']: Execute(Delete(os.path.join(env['libinstall'],"pythonMPI")))
663    
 ############ Add some custom builders ##########################  
664    
665  py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  ############ Build the subdirectories ##########################
 env.Append(BUILDERS = {'PyCompile' : py_builder});  
   
 runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  
 env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  
666    
667  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  from grouptest import *
 env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  
668    
669  ############ Build the subdirectories ##########################  TestGroups=[]
670    
671  Export(["env", "env_mpi", "clone_env"])  Export(
672      ["env",
673       "env_mpi",
674       "clone_env",
675       "IS_WINDOWS_PLATFORM",
676       "TestGroups"
677       ]
678      )
679    
680  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
681    env.SConscript(dirs = ['tools/libescriptreader/src'], build_dir='build/$PLATFORM/tools/libescriptreader', duplicate=0)
682  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)
683  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)
684  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)
# Line 551  env.SConscript(dirs = ['pyvisi/py_src'], Line 689  env.SConscript(dirs = ['pyvisi/py_src'],
689  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)
690  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)
691  env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)  env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)
692    env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)
693    
694    
695  ############ Remember what optimizations we used ###############  ############ Remember what optimizations we used ###############
696    
697  remember_list = []  remember_list = []
698    
699  if env['usedebug']:  if env['usedebug']:
700    remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.debug"), None, Touch('$TARGET'))
701    
702  if env['usempi']:  if env['usempi']:
703    remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.mpi"), None, Touch('$TARGET'))
704    
705  if env['omp_optim'] != '':  if env['useopenmp']:
706    remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.openmp"), None, Touch('$TARGET'))
707    
708  env.Alias('remember_options', remember_list)  env.Alias('remember_options', remember_list)
709    
710    
711    ############### Record python interpreter version ##############
712    
713    if not IS_WINDOWS_PLATFORM:
714      versionstring="Python "+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])
715      os.system("echo "+versionstring+" > "+os.path.join(env['libinstall'],"pyversion"))
716    
717    ############## Populate the buildvars file #####################
718    
719    buildvars=open(os.path.join(env['libinstall'],'buildvars'),'w')
720    buildvars.write('python='+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+'\n')
721    
722    # Find the boost version by extracting it from version.hpp
723    boosthpp=open(os.path.join(env['boost_path'],'boost','version.hpp'))
724    boostversion='unknown'
725    try:
726        for line in boosthpp:
727            ver=re.match(r'#define BOOST_VERSION (\d+)',line)
728            if ver:
729                boostversion=ver.group(1)
730    except StopIteration:
731        pass
732    buildvars.write("boost="+boostversion+"\n")
733    buildvars.write("svn_revision="+str(global_revision)+"\n")
734    out="usedebug="
735    if env['usedebug']:
736        out+="y"
737    else:
738        out+="n"
739    out+="\nusempi="
740    if env['usempi']:
741        out+="y"
742    else:
743        out+="n"
744    out+="\nuseopenmp="
745    if env['useopenmp']:
746        out+="y"
747    else:
748        out+="n"
749    buildvars.write(out+"\n")
750    buildvars.write("mpi_flavour="+env['mpi_flavour']+'\n')
751    
752    buildvars.close()
753    
754    
755  ############ Targets to build and install libraries ############  ############ Targets to build and install libraries ############
756    
757  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))
# Line 592  build_all_list += ['build_paso'] Line 777  build_all_list += ['build_paso']
777  build_all_list += ['build_escript']  build_all_list += ['build_escript']
778  build_all_list += ['build_finley']  build_all_list += ['build_finley']
779  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']
780  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_finley_wrapper']  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_escript_wrapper']
781    if env['usesilo']:  build_all_list += ['target_escript2silo']
782  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
783    
784  install_all_list = []  install_all_list = []
# Line 605  install_all_list += ['target_install_pyv Line 791  install_all_list += ['target_install_pyv
791  install_all_list += ['target_install_modellib_py']  install_all_list += ['target_install_modellib_py']
792  install_all_list += ['target_install_pycad_py']  install_all_list += ['target_install_pycad_py']
793  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']
794  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_finley_wrapper']  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_escript_wrapper']
795    if env['usesilo']:  install_all_list += ['target_install_escript2silo']
796  install_all_list += ['remember_options']  install_all_list += ['remember_options']
797  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
798    
# Line 618  env.Alias('build_cppunittest', ['target_ Line 805  env.Alias('build_cppunittest', ['target_
805  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])
806  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])
807  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])
808    env.Alias('build_full',['install_all','build_tests','build_py_tests'])
809    
810  ############ Targets to build the documentation ################  ############ Targets to build the documentation ################
811    
812  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html','install_pdf'])
813    
814    if not IS_WINDOWS_PLATFORM:
815       try:
816        utest=open("utest.sh","w")
817        build_platform=os.name      #Sometimes Mac python says it is posix
818        if (build_platform=='posix') and platform.system()=="Darwin":
819            build_platform='darwin'
820        utest.write(GroupTest.makeHeader(build_platform))
821        for tests in TestGroups:
822            utest.write(tests.makeString())
823        utest.close()
824        os.chmod("utest.sh",stat.S_IRWXU|stat.S_IRGRP|stat.S_IXGRP|stat.S_IROTH|stat.S_IXOTH)
825        print "utest.sh written"
826       except IOError:
827        print "Error attempting to write unittests file."
828        sys.exit(1)
829    

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