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revision 1428 by trankine, Wed Feb 27 08:07:11 2008 UTC revision 2251 by gross, Fri Feb 6 06:50:39 2009 UTC
# Line 1  Line 1 
1  #         Copyright 2006 by ACcESS MNRF  
2    ########################################################
3    #
4    # Copyright (c) 2003-2008 by University of Queensland
5    # Earth Systems Science Computational Center (ESSCC)
6    # http://www.uq.edu.au/esscc
7    #
8    # Primary Business: Queensland, Australia
9    # Licensed under the Open Software License version 3.0
10    # http://www.opensource.org/licenses/osl-3.0.php
11  #  #
12  #              http://www.access.edu.au  ########################################################
13  #       Primary Business: Queensland, Australia  
14  #  Licensed under the Open Software License version 3.0  
 #     http://www.opensource.org/licenses/osl-3.0.php  
   
 # top-level Scons configuration file for all esys13 modules  
 # Begin initialisation Section  
 # all of this section just intialises default environments and helper  
 # scripts. You shouldn't need to modify this section.  
15  EnsureSConsVersion(0,96,91)  EnsureSConsVersion(0,96,91)
16  EnsurePythonVersion(2,3)  EnsurePythonVersion(2,3)
17    
18  #===============================================================  import sys, os, re, socket
19  #   import tools:  
 import glob  
 import sys, os, re  
20  # Add our extensions  # Add our extensions
21  if sys.path.count('scons')==0: sys.path.append('scons')  if os.path.isdir('scons'): sys.path.append('scons')
22  import scons_extensions  import scons_extensions
23    
24  # We may also need to know where python's site-packages subdirectory lives  # Use /usr/lib64 if available, else /usr/lib
25  python_version = 'python%s.%s'%(sys.version_info[0],sys.version_info[1])  usr_lib = '/usr/lib'
26    if os.path.isfile('/usr/lib64/libc.so'): usr_lib = '/usr/lib64'
 #===============================================================  
   
 tools_prefix="/usr"  
   
 #==============================================================================================      
 #      
 #    get the installation prefix  
 #  
 prefix = ARGUMENTS.get('prefix', sys.prefix )  
   
 # We may also need to know where python's site-packages subdirectory lives  
 python_version = 'python%s.%s'%(sys.version_info[0],sys.version_info[1])  
 # Install as a standard python package in /usr/lib64 if available, else in /usr/lib  
 if os.path.isdir(  prefix+"/lib64/"+python_version+"/site-packages"):  
    sys_dir_packages =  prefix+"/lib64/"+python_version+"/site-packages/esys"  
    sys_dir_libraries = prefix+"/lib64"  
 else:  
    sys_dir_packages =  prefix+"/lib/"+python_version+"/site-packages/esys"  
    sys_dir_libraries = prefix+"/lib"  
   
 sys_dir_examples = prefix+"/share/doc/esys"  
   
 source_root = Dir('#.').abspath  
   
 dir_packages = os.path.join(source_root,"esys")  
 dir_examples = os.path.join(source_root,"examples")  
 dir_libraries = os.path.join(source_root,"lib")  
   
 print "Source root is : ",source_root  
 print " Default packages local installation:    ", dir_packages  
 print " Default library local installation  ", dir_libraries  
 print " Default example local  installation:    ", dir_examples  
 print "Install prefix is: ", prefix  
 print " Default packages system installation:   ", sys_dir_packages  
 print " Default library system installation     ", sys_dir_libraries  
 print " Default example system installation:    ", sys_dir_examples  
   
 #==============================================================================================      
   
 # Default options and options help text  
 # These are defaults and can be overridden using command line arguments or an options file.  
 # if the options_file or ARGUMENTS do not exist then the ones listed as default here are used  
 # DO NOT CHANGE THEM HERE  
 # Where to install?  
 #==============================================================================================      
 #      
 #    get the options file if present:  
 #  
 options_file = ARGUMENTS.get('options_file','')  
   
 if not os.path.isfile(options_file) :  
     options_file = False  
   
 if not options_file :  
    import socket  
    hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  
    tmp = os.path.join("scons",hostname+"_options.py")  
27    
28     if os.path.isfile(tmp) :  # The string python2.4 or python2.5
29        options_file = tmp  python_version = 'python%s.%s' % (sys.version_info[0], sys.version_info[1])
30    
31    # MS Windows support, many thanks to PH
32  IS_WINDOWS_PLATFORM = (os.name== "nt")  IS_WINDOWS_PLATFORM = (os.name== "nt")
33    
34  # If you're not going to tell me then......  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)
 # FIXME: add one for the altix too.  
 if not options_file :  
    if IS_WINDOWS_PLATFORM :  
       options_file = "scons/windows_mscv71_options.py"  
    else:  
       options_file = "scons/linux_gcc_eg_options.py"  
   
 # and load it  
 opts = Options(options_file, ARGUMENTS)  
 #================================================================  
 #  
 #   check if UMFPACK is installed on the system:  
 #  
 uf_root=None  
 for i in [ 'UMFPACK', 'umfpack', 'ufsparse', 'UFSPARSE']:  
    if os.path.isdir(os.path.join(tools_prefix,'include',i)):  
        uf_root=i  
        print i," is used form ",tools_prefix  
        break  
 if not uf_root==None:  
    umf_path_default=os.path.join(tools_prefix,'include',uf_root)  
    umf_lib_path_default=os.path.join(tools_prefix,'lib')  
    umf_libs_default=['umfpack']  
    amd_path_default=os.path.join(tools_prefix,'include',uf_root)  
    amd_lib_path_default=os.path.join(tools_prefix,'lib')  
    amd_libs_default=['amd']  
    ufc_path_default=os.path.join(tools_prefix,'include',uf_root)  
 else:  
    umf_path_default=None  
    umf_lib_path_default=None  
    umf_libs_default=None  
    amd_path_default=None  
    amd_lib_path_default=None  
    amd_libs_default=None  
    ufc_path_default=None  
 #  
 #==========================================================================  
 #  
 #    python installation:  
 #  
 python_path_default=os.path.join(tools_prefix,'include','python%s.%s'%(sys.version_info[0],sys.version_info[1]))  
 python_lib_path_default=os.path.join(tools_prefix,'lib')  
 python_lib_default="python%s.%s"%(sys.version_info[0],sys.version_info[1])  
35    
36  #==========================================================================  # Read configuration options from file scons/<hostname>_options.py
37  #  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])
38  #    boost installation:  tmp = os.path.join("scons",hostname+"_options.py")
39  #  options_file = ARGUMENTS.get('options_file', tmp)
40  boost_path_default=os.path.join(tools_prefix,'include')  if not os.path.isfile(options_file):
41  boost_lib_path_default=os.path.join(tools_prefix,'lib')    options_file = False
42  boost_lib_default=['boost_python']    print "Options file not found (expected '%s')" % tmp
43    else:
44      print "Options file is", options_file
45    
46  #==========================================================================  # Load options file and command-line arguments
47  #  opts = Options(options_file, ARGUMENTS)
 #    check if netCDF is installed on the system:  
 #  
 netCDF_path_default=os.path.join(tools_prefix,'include','netcdf-3')  
 netCDF_lib_path_default=os.path.join(tools_prefix,'lib')  
48    
49  if os.path.isdir(netCDF_path_default) and os.path.isdir(netCDF_lib_path_default):  ############ Load build options ################################
      useNetCDF_default='yes'  
      netCDF_libs_default=[ 'netcdf_c++', 'netcdf' ]  
 else:  
      useNetCDF_default='no'  
      netCDF_path_default=None  
      netCDF_lib_path_default=None  
      netCDF_libs_default=None  
50    
 #==========================================================================  
 #  
 #  MPI:  
 #  
 if IS_WINDOWS_PLATFORM:  
    useMPI_default='no'  
    mpi_path_default=None  
    mpi_lib_path_default=None  
    mpi_libs_default=[]  
    mpi_run_default=None  
 else:  
    useMPI_default='no'  
    mpi_root='/usr/local'  
    mpi_path_default=os.path.join(mpi_root,'include')  
    mpi_lib_path_default=os.path.join(mpi_root,'lib')  
    mpi_libs_default=[ 'mpich' , 'pthread', 'rt' ]  
    mpi_run_default='mpiexec -np 1'  
 #  
 #==========================================================================  
 #  
 #    compile:  
 #  
 cc_flags_default='-O3 -std=c99 -ffast-math -fpic -Wno-unknown-pragmas -ansi'  
 cc_flags_debug_default='-g -O0 -ffast-math -std=c99 -fpic -Wno-unknown-pragmas -ansi'  
 cxx_flags_default='--no-warn -ansi'  
 cxx_flags_debug_default='--no-warn -ansi -DDOASSERT'  
   
 #==============================================================================================      
 # Default options and options help text  
 # These are defaults and can be overridden using command line arguments or an options file.  
 # if the options_file or ARGUMENTS do not exist then the ones listed as default here are used  
 # DO NOT CHANGE THEM HERE  
51  opts.AddOptions(  opts.AddOptions(
52  # Where to install esys stuff  # Where to install esys stuff
53    ('incinstall', 'where the esys headers will be installed',             Dir('#.').abspath+'/include'),    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),
54    ('libinstall', 'where the esys libraries will be installed',           dir_libraries),    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),
55    ('pyinstall', 'where the esys python modules will be installed',       dir_packages),    ('bininstall', 'where the esys binaries will be installed',            os.path.join(prefix,'bin')),
56    ('exinstall', 'where the esys examples will be installed',             dir_examples),    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),
57    ('sys_libinstall', 'where the system esys libraries will be installed',       sys_dir_libraries),    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),
   ('sys_pyinstall', 'where the system esys python modules will be installed',   sys_dir_packages),  
   ('sys_exinstall', 'where the system esys examples will be installed',         sys_dir_examples),  
   ('src_zipfile', 'the source zip file will be installed.',              Dir('#.').abspath+"/release/escript_src.zip"),  
   ('test_zipfile', 'the test zip file will be installed.',               Dir('#.').abspath+"/release/escript_tests.zip"),  
   ('src_tarfile', 'the source tar file will be installed.',              Dir('#.').abspath+"/release/escript_src.tar.gz"),  
   ('test_tarfile', 'the test tar file will be installed.',               Dir('#.').abspath+"/release/escript_tests.tar.gz"),  
   ('examples_tarfile', 'the examples tar file will be installed.',       Dir('#.').abspath+"/release/doc/escript_examples.tar.gz"),  
   ('examples_zipfile', 'the examples zip file will be installed.',       Dir('#.').abspath+"/release/doc/escript_examples.zip"),  
   ('guide_pdf', 'name of the user guide in pdf format',                  Dir('#.').abspath+"/release/doc/user/guide.pdf"),  
   ('api_epydoc', 'name of the epydoc api docs directory',                Dir('#.').abspath+"/release/doc/epydoc"),  
   ('guide_html', 'name of the directory for user guide in html format',  Dir('#.').abspath+"/release/doc/user/html"),  
   ('api_doxygen', 'name of the doxygen api docs directory',prefix+"/release/doc/doxygen"),  
58  # Compilation options  # Compilation options
59    BoolOption('dodebug', 'Do you want a debug build?', 'no'),    BoolOption('dodebug', 'For backwards compatibility', 'no'),
60    BoolOption('bounds_check', 'Do you want extra array bounds checking?', 'no'),    BoolOption('usedebug', 'Do you want a debug build?', 'no'),
61    ('options_file', "Optional file containing preferred options. Ignored if it doesn't exist (default: scons/<hostname>_options.py)", options_file),    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),
62    ('cc_defines','C/C++ defines to use', None),    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),
63    ('cc_flags','C compiler flags to use (Release build)', cc_flags_default),    ('win_cc_name', 'windows C compiler name if needed', 'msvc'),
64    ('cc_flags_debug', 'C compiler flags to use (Debug build)', cc_flags_debug_default),    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below
65    ('cxx_flags', 'C++ compiler flags to use (Release build)', cxx_flags_default),    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),
66    ('cxx_flags_debug', 'C++ compiler flags to use (Debug build)', cxx_flags_debug_default),    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),
67    ('omp_flags', 'OpenMP compiler flags to use (Release build)', ''),    ('cc_debug', 'C compiler debug flags to use', '-DEFAULT_3'),
68    ('omp_flags_debug', 'OpenMP compiler flags to use (Debug build)', ''),    ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),
69    ('ar_flags', 'Static library archiver flags to use', None),    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),
70    ('sys_libs', 'System libraries to link with', None),    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),
71    ('tar_flags','flags for zip files','-c -z'),    ('cc_extra', 'Extra C/C++ flags', ''),
72  # MKL    ('ld_extra', 'Extra linker flags', ''),
73    PathOption('mkl_path', 'Path to MKL includes', None),    ('sys_libs', 'System libraries to link with', []),
74    PathOption('mkl_lib_path', 'Path to MKL libs', None),    ('ar_flags', 'Static library archiver flags to use', ''),
75    ('mkl_libs', 'MKL libraries to link with', None),    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'yes'),
76  # SCSL    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),
77    PathOption('scsl_path', 'Path to SCSL includes', None),    BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),
   PathOption('scsl_lib_path', 'Path to SCSL libs', None),  
   ('scsl_libs', 'SCSL libraries to link with', None),  
   ('scsl_libs_MPI', 'SCSL libraries to link with for MPI build', None),  
 # UMFPACK  
   PathOption('ufc_path', 'Path to UFconfig includes', ufc_path_default),  
   PathOption('umf_path', 'Path to UMFPACK includes', umf_path_default),  
   PathOption('umf_lib_path', 'Path to UMFPACK libs', umf_lib_path_default),  
   ('umf_libs', 'UMFPACK libraries to link with', umf_libs_default),  
 # AMD (used by UMFPACK)  
   PathOption('amd_path', 'Path to AMD includes', amd_path_default),  
   PathOption('amd_lib_path', 'Path to AMD libs', amd_lib_path_default),  
   ('amd_libs', 'AMD libraries to link with', amd_libs_default),  
 # TRILINOS  
   PathOption('trilinos_path', 'Path to TRILINOS includes', None),  
   PathOption('trilinos_lib_path', 'Path to TRILINOS libs', None),  
   ('trilinos_libs', 'TRILINOS libraries to link with', None),  
 # BLAS  
   PathOption('blas_path', 'Path to BLAS includes', None),  
   PathOption('blas_lib_path', 'Path to BLAS libs', None),  
   ('blas_libs', 'BLAS libraries to link with', None),  
 # netCDF  
   ('useNetCDF', 'switch on/off the usage of netCDF', useNetCDF_default),  
   PathOption('netCDF_path', 'Path to netCDF includes', netCDF_path_default),  
   PathOption('netCDF_lib_path', 'Path to netCDF libs', netCDF_lib_path_default),  
   ('netCDF_libs', 'netCDF C++ libraries to link with', netCDF_libs_default),  
78  # Python  # Python
79  # locations of include files for python    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),
80  # FIXME: python_path should be python_inc_path and the same for boost etc.    ('python_lib_path', 'Path to Python libs', usr_lib),
81    PathOption('python_path', 'Path to Python includes', python_path_default),    ('python_libs', 'Python libraries to link with', [python_version]),
   PathOption('python_lib_path', 'Path to Python libs', python_lib_path_default),  
   ('python_lib', 'Python libraries to link with', python_lib_default),  
82    ('python_cmd', 'Python command', 'python'),    ('python_cmd', 'Python command', 'python'),
83  # Boost  # Boost
84    PathOption('boost_path', 'Path to Boost includes', boost_path_default),    ('boost_path', 'Path to Boost includes', '/usr/include'),
85    PathOption('boost_lib_path', 'Path to Boost libs', boost_lib_path_default),    ('boost_lib_path', 'Path to Boost libs', usr_lib),
86    ('boost_lib', 'Boost libraries to link with', boost_lib_default),    ('boost_libs', 'Boost libraries to link with', ['boost_python']),
87  # Doc building  # NetCDF
88  #  PathOption('doxygen_path', 'Path to Doxygen executable', None),    BoolOption('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),
89  #  PathOption('epydoc_path', 'Path to Epydoc executable', None),    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),
90  # PAPI    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),
91    PathOption('papi_path', 'Path to PAPI includes', None),    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),
   PathOption('papi_lib_path', 'Path to PAPI libs', None),  
   ('papi_libs', 'PAPI libraries to link with', None),  
   ('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', None),  
92  # MPI  # MPI
93    BoolOption('useMPI', 'Compile parallel version using MPI', useMPI_default),    BoolOption('useMPI', 'For backwards compatibility', 'no'),
94      BoolOption('usempi', 'Compile parallel version using MPI', 'no'),
95    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),
96    PathOption('mpi_path', 'Path to MPI includes', mpi_path_default),    ('mpi_path', 'Path to MPI includes', '/usr/include'),
97    ('mpi_run', 'mpirun name' , mpi_run_default),    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),
98    PathOption('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)',mpi_lib_path_default),    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),
99    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', mpi_libs_default)    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),
100    # ParMETIS
101      BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),
102      ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),
103      ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),
104      ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),
105    # PAPI
106      BoolOption('usepapi', 'switch on/off the usage of PAPI', 'no'),
107      ('papi_path', 'Path to PAPI includes', '/usr/include'),
108      ('papi_lib_path', 'Path to PAPI libs', usr_lib),
109      ('papi_libs', 'PAPI libraries to link with', ['papi']),
110      BoolOption('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),
111    # MKL
112      BoolOption('usemkl', 'switch on/off the usage of MKL', 'no'),
113      ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),
114      ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),
115      ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),
116    # UMFPACK
117      BoolOption('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),
118      ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),
119      ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),
120      ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),
121      ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),
122    # Silo
123      BoolOption('usesilo', 'switch on/off the usage of Silo', 'yes'),
124      ('silo_path', 'Path to Silo includes', '/usr/include'),
125      ('silo_lib_path', 'Path to Silo libs', usr_lib),
126      ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
127    # AMD (used by UMFPACK)
128      ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),
129      ('amd_lib_path', 'Path to AMD libs', usr_lib),
130      ('amd_libs', 'AMD libraries to link with', ['amd']),
131    # BLAS (used by UMFPACK)
132      ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),
133      ('blas_lib_path', 'Path to BLAS libs', usr_lib),
134      ('blas_libs', 'BLAS libraries to link with', ['blas']),
135    # An option for specifying the compiler tools set (see windows branch).
136      ('tools_names', 'allow control over the tools in the env setup', ['intelc']),
137    # finer control over library building, intel aggressive global optimisation
138    # works with dynamic libraries on windows.
139      ('share_esysUtils', 'control static or dynamic esysUtils lib', False),
140      ('share_paso', 'control static or dynamic paso lib', False)
141  )  )
142  #=================================================================================================  
143  #  ############ Specify which compilers to use ####################
144  #   Note: On the Altix the intel compilers are not automatically  
145  #   detected by scons intelc.py script. The Altix has a different directory  # intelc uses regular expressions improperly and emits a warning about
146  #   path and in some locations the "modules" facility is used to support  # failing to find the compilers.  This warning can be safely ignored.
 #   multiple compiler versions. This forces the need to import the users PATH  
 #   environment which isn't the "scons way"  
 #   This doesn't impact linux and windows which will use the default compiler (g++ or msvc, or the intel compiler if it is installed on both platforms)  
 #   FIXME: Perhaps a modification to intelc.py will allow better support for ia64 on altix  
 #  
147    
148  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
149        env = Environment(tools = ['default', 'msvc'], options = opts)        env = Environment(options = opts)
150        #env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default'] + env['tools_names'],
151                            options = opts)
152  else:  else:
153     if os.uname()[4]=='ia64':     if socket.gethostname().split('.')[0] == 'service0':
154          env = Environment(tools = ['default', 'intelc'], options = opts)
155       elif os.uname()[4]=='ia64':
156        env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default', 'intelc'], options = opts)
157        if env['CXX'] == 'icpc':        if env['CXX'] == 'icpc':
158           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not). FIXME: this behaviour could be directly incorporated into scons intelc.py           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)
159     else:     else:
160        env = Environment(tools = ['default'], options = opts)        env = Environment(tools = ['default'], options = opts)
161  Help(opts.GenerateHelpText(env))  Help(opts.GenerateHelpText(env))
162    
163  if env['bounds_check']:  ############ Fill in compiler options if not set above #########
    env.Append(CPPDEFINES = [ 'BOUNDS_CHECK' ])  
    env.Append(CXXDEFINES = [ 'BOUNDS_CHECK' ])  
    bounds_check = env['bounds_check']  
 else:  
    bounds_check = 0  
164    
165  #=================================================================================================  # Backwards compatibility: allow dodebug=yes and useMPI=yes
166  #  if env['dodebug']: env['usedebug'] = 1
167  #     Initialise Scons Build Environment  if env['useMPI']: env['usempi'] = 1
168  #     check for user environment variables we are interested in  
169  try:  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)
170     tmp = os.environ['PYTHONPATH']  # For both C and C++ you get: cc_flags and either the optim flags or debug flags
171     env['ENV']['PYTHONPATH'] = tmp  
172  except KeyError:  sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.
173     pass  
174    if env["CC"] == "icc":
175  env.PrependENVPath('PYTHONPATH', source_root)    # Intel compilers
176      cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
177      cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"
178      cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
179      omp_optim     = "-openmp -openmp_report0"
180      omp_debug     = "-openmp -openmp_report0"
181      omp_libs      = ['guide', 'pthread']
182      pedantic      = ""
183      fatalwarning      = ""        # Switch to turn warnings into errors
184      sysheaderopt      = ""
185    elif env["CC"] == "gcc":
186      # GNU C on any system
187      cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"
188    #the long long warning occurs on the Mac
189      cc_optim      = "-O3"
190      cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
191      omp_optim     = ""
192      omp_debug     = ""
193      omp_libs      = []
194      pedantic      = "-pedantic-errors -Wno-long-long"
195      fatalwarning      = "-Werror"
196      sysheaderopt      = "-isystem "
197    elif env["CC"] == "cl":
198      # Microsoft Visual C on Windows
199      cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"
200      cc_optim      = "/O2 /Op /MT /W3"
201      cc_debug      = "/Od /RTC1 /MTd /ZI -DBOUNDS_CHECK"
202      omp_optim     = ""
203      omp_debug     = ""
204      omp_libs      = []
205      pedantic      = ""
206      fatalwarning      = ""
207      sysheaderopt      = ""
208    elif env["CC"] == "icl":
209      # intel C on Windows, see windows_intelc_options.py for a start
210      pedantic      = ""
211      fatalwarning      = ""
212      sysheaderopt      = ""
213    
214    
215    # If not specified in hostname_options.py then set them here
216    if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags
217    if env["cc_optim"]  == "-DEFAULT_2": env['cc_optim'] = cc_optim
218    if env["cc_debug"]  == "-DEFAULT_3": env['cc_debug'] = cc_debug
219    if env["omp_optim"] == "-DEFAULT_4": env['omp_optim'] = omp_optim
220    if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug
221    if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs
222    
223    # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty
224    if not env["useopenmp"]:
225      env['omp_optim'] = ""
226      env['omp_debug'] = ""
227      env['omp_libs'] = []
228    
229    if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0
230    
231    ############ Copy environment variables into scons env #########
232    
233    try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']
234    except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1
235    
236    try: env['ENV']['PATH'] = os.environ['PATH']
237    except KeyError: pass
238    
239    try: env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
240    except KeyError: pass
241    
242    try: env['ENV']['C_INCLUDE_PATH'] = os.environ['C_INCLUDE_PATH']
243    except KeyError: pass
244    
245    try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']
246    except KeyError: pass
247    
248    try: env['ENV']['LD_LIBRARY_PATH'] = os.environ['LD_LIBRARY_PATH']
249    except KeyError: pass
250    
251    try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']
252    except KeyError: pass
253    
254    try: env['ENV']['DISPLAY'] = os.environ['DISPLAY']
255    except KeyError: pass
256    
257    try: env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']
258    except KeyError: pass
259    
260    try: env['ENV']['HOME'] = os.environ['HOME']
261    except KeyError: pass
262    
263    # Configure for test suite
264    env.PrependENVPath('PYTHONPATH', prefix)
265    env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
266    
267    env['ENV']['ESCRIPT_ROOT'] = prefix
268    
269    ############ Set up paths for Configure() ######################
270    
271    # Make a copy of an environment
272    # Use env.Clone if available, but fall back on env.Copy for older version of scons
273    def clone_env(env):
274      if 'Clone' in dir(env): return env.Clone()    # scons-0.98
275      else:                   return env.Copy() # scons-0.96
276    
277    # Add cc option -I<Escript>/trunk/include
278    env.Append(CPPPATH      = [Dir('include')])
279    
280    # Add cc option -L<Escript>/trunk/lib
281    env.Append(LIBPATH      = [Dir(env['libinstall'])])
282    
283  try:  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])
284     omp_num_threads = os.environ['OMP_NUM_THREADS']  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])
 except KeyError:  
    omp_num_threads = 1  
 env['ENV']['OMP_NUM_THREADS'] = omp_num_threads  
285    
286  try:  if env['usepedantic']: env.Append(CCFLAGS = pedantic)
    path = os.environ['PATH']  
    env['ENV']['PATH'] = path  
 except KeyError:  
    omp_num_threads = 1  
287    
288  env['ENV']['OMP_NUM_THREADS'] = omp_num_threads  # MS Windows
289    if IS_WINDOWS_PLATFORM:
290      env.PrependENVPath('PATH',    [env['boost_lib_path']])
291      env.PrependENVPath('PATH',    [env['libinstall']])
292      if not env['share_esysUtils'] :
293        env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
294      if not env['share_paso'] :
295        env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
296    
297      if env['usenetcdf']:
298        env.PrependENVPath('PATH',  [env['netCDF_lib_path']])
299    
300    env.Append(ARFLAGS = env['ar_flags'])
301    
302  # Copy some variables from the system environment to the build environment  # Get the global Subversion revision number for getVersion() method
303  try:  try:
304     env['ENV']['DISPLAY'] = os.environ['DISPLAY']     global_revision = os.popen("svnversion -n .").read()
305     env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']     global_revision = re.sub(":.*", "", global_revision)
306     home_temp = os.environ['HOME']   # MPICH2's mpd needs $HOME to find $HOME/.mpd.conf     global_revision = re.sub("[^0-9]", "", global_revision)
307     env['ENV']['HOME'] = home_temp  except:
308  except KeyError:     global_revision="-1"
309     pass  if global_revision == "": global_revision="-2"
310    env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])
311    
312  try:  ############ numarray (required) ###############################
    tmp = os.environ['PATH']  
    env['ENV']['PATH'] = tmp  
 except KeyError:  
    pass  
313    
314  try:  try:
315     tmp = os.environ['LD_LIBRARY_PATH']    from numarray import identity
316     print tmp  except ImportError:
317     env['ENV']['LD_LIBRARY_PATH'] = tmp    print "Cannot import numarray, you need to set your PYTHONPATH"
318  except KeyError:    sys.exit(1)
    pass  
 #==========================================================================  
 #  
 #    Add some customer builders  
 #  
 py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  
 env.Append(BUILDERS = {'PyCompile' : py_builder});  
319    
320  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed',  ############ C compiler (required) #############################
                               src_suffix=env['PROGSUFFIX'], single_source=True)  
321    
322  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  # Create a Configure() environment for checking existence of required libraries and headers
323    conf = Configure(clone_env(env))
324    
325  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  # Test that the compiler is working
326  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  if not conf.CheckFunc('printf'):
327      print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])
328      sys.exit(1)
329    
330  # Convert the options which are held in environment variable into python variables for ease of handling and configure compilation options  if conf.CheckFunc('gethostname'):
331  try:    conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])
    incinstall = env['incinstall']  
    env.Append(CPPPATH = [incinstall,])  
 except KeyError:  
    incinstall = None  
 try:  
    libinstall = env['libinstall']  
    env.Append(LIBPATH = [libinstall,]) # Adds -L for building of libescript.so libfinley.so escriptcpp.so finleycpp.so  
    env.PrependENVPath('LD_LIBRARY_PATH', libinstall)  
    if IS_WINDOWS_PLATFORM :  
       env.PrependENVPath('PATH', libinstall)  
       env.PrependENVPath('PATH', env['boost_lib_path'])  
 except KeyError:  
    libinstall = None  
 try:  
    pyinstall = env['pyinstall'] # all targets will install into pyinstall/esys but PYTHONPATH points at straight pyinstall so you go import esys.escript etc  
 except KeyError:  
    pyinstall = None  
332    
333  try:  ############ python libraries (required) #######################
    cc_defines = env['cc_defines']  
    env.Append(CPPDEFINES = cc_defines)  
 except KeyError:  
    pass  
 try:  
    flags = env['ar_flags']  
    env.Append(ARFLAGS = flags)  
 except KeyError:  
    ar_flags = None  
 try:  
    sys_libs = env['sys_libs']  
 except KeyError:  
    sys_libs = []  
334    
 try:  
    tar_flags = env['tar_flags']  
    env.Replace(TARFLAGS = tar_flags)  
 except KeyError:  
    pass  
335    
336  try:  if not sysheaderopt =="":
337     exinstall = env['exinstall']    conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])
338  except KeyError:  else:
339     exinstall = None    conf.env.AppendUnique(CPPPATH     = [env['python_path']])
 try:  
    sys_libinstall = env['sys_libinstall']  
 except KeyError:  
    sys_libinstall = None  
 try:  
    sys_pyinstall = env['sys_pyinstall']  
 except KeyError:  
    sys_pyinstall = None  
 try:  
    sys_exinstall = env['sys_exinstall']  
 except KeyError:  
    sys_exinstall = None  
340    
341  # ====================== debugging ===================================  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])
342  try:  conf.env.AppendUnique(LIBS      = [env['python_libs']])
    dodebug = env['dodebug']  
 except KeyError:  
    dodebug = None  
343    
344  # === switch on omp ===================================================  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs
 try:  
   omp_flags = env['omp_flags']  
 except KeyError:  
   omp_flags = ''  
345    
346  try:  if not conf.CheckCHeader('Python.h'):
347    omp_flags_debug = env['omp_flags_debug']    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])
348  except KeyError:    sys.exit(1)
349    omp_flags_debug = ''  if not conf.CheckFunc('Py_Main'):
350      print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])
351      sys.exit(1)
352    
353  # ========= use mpi? =====================================================  ############ boost (required) ##################################
354  try:  
355     useMPI = env['useMPI']  if not sysheaderopt =="":
356  except KeyError:    conf.env.Append(CCFLAGS=sysheaderopt+env['boost_path']+'boost')
    useMPI = None  
 # ========= set compiler flags ===========================================  
   
 if dodebug:  
     try:  
       flags = env['cc_flags_debug'] + ' ' + omp_flags_debug  
       env.Append(CCFLAGS = flags)  
     except KeyError:  
       pass  
357  else:  else:
358     try:    conf.env.AppendUnique(CPPPATH     = [env['boost_path']])
       flags = env['cc_flags'] + ' ' + omp_flags  
       env.Append(CCFLAGS = flags)  
    except KeyError:  
       pass  
 if dodebug:  
      try:  
         flags = env['cxx_flags_debug']  
         env.Append(CXXFLAGS = flags)  
      except KeyError:  
         pass  
 else:  
      try:  
         flags = env['cxx_flags']  
         env.Append(CXXFLAGS = flags)  
      except KeyError:  
         pass  
 try:  
      if env['CC'] == 'gcc': env.Append(CCFLAGS = "-pedantic-errors -Wno-long-long")  
 except:  
      pass  
359    
360  # ============= Remember what options were used in the compile =====================================  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])
361  if not IS_WINDOWS_PLATFORM:  conf.env.AppendUnique(LIBS      = [env['boost_libs']])
   env.Execute("/bin/rm -f " + libinstall + "/Compiled.with.*")  
   if dodebug:       env.Execute("touch " + libinstall + "/Compiled.with.debug")  
   if useMPI:        env.Execute("touch " + libinstall + "/Compiled.with.mpi")  
   if omp_flags != '':   env.Execute("touch " + libinstall + "/Compiled.with.OpenMP")  
   if bounds_check:  env.Execute("touch " + libinstall + "/Compiled.with.bounds_check")  
362    
363  # ============= set mkl (but only of no MPI) =====================================  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs
 if not useMPI:  
    try:  
       includes = env['mkl_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
364    
365     try:  if not conf.CheckCXXHeader('boost/python.hpp'):
366        lib_path = env['mkl_lib_path']    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])
367        env.Append(LIBPATH = [lib_path,])    sys.exit(1)
368        env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  if not conf.CheckFunc('PyObject_SetAttr'):
369     except KeyError:    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])
370        pass    sys.exit(1)
371    
372     try:  # Commit changes to environment
373        mkl_libs = env['mkl_libs']  env = conf.Finish()
    except KeyError:  
       mkl_libs = []  
 else:  
      mkl_libs = []  
374    
375  # ============= set scsl (but only of no MPI) =====================================  ############ VTK (optional) ####################################
 if not useMPI:  
    try:  
       includes = env['scsl_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
376    
377     try:  if env['usevtk']:
378        lib_path = env['scsl_lib_path']    try:
379        env.Append(LIBPATH = [lib_path,])      import vtk
380        env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path      env['usevtk'] = 1
381     except KeyError:    except ImportError:
382        pass      env['usevtk'] = 0
     
    try:  
       scsl_libs = env['scsl_libs']  
    except KeyError:  
       scsl_libs = [ ]  
383    
384  else:  # Add VTK to environment env if it was found
385      scsl_libs =  []  if env['usevtk']:
386      env.Append(CPPDEFINES = ['USE_VTK'])
387    
388  # ============= set TRILINOS (but only with MPI) =====================================  ############ NetCDF (optional) #################################
 if useMPI:  
    try:  
       includes = env['trilinos_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
389    
390     try:  conf = Configure(clone_env(env))
       lib_path = env['trilinos_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
    except KeyError:  
       pass  
391    
392     try:  if env['usenetcdf']:
393        trilinos_libs = env['trilinos_libs']    conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])
394     except KeyError:    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])
395        trilinos_libs = []    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])
396  else:    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs
      trilinos_libs = []  
397    
398    if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0
399    if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0
400    
401  # ============= set umfpack (but only without MPI) =====================================  # Add NetCDF to environment env if it was found
402  umf_libs=[ ]  if env['usenetcdf']:
403  if not useMPI:    env = conf.Finish()
404     try:    env.Append(CPPDEFINES = ['USE_NETCDF'])
405        includes = env['umf_path']  else:
406        env.Append(CPPPATH = [includes,])    conf.Finish()
    except KeyError:  
       pass  
407    
408     try:  ############ PAPI (optional) ###################################
       lib_path = env['umf_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
    except KeyError:  
       pass  
409    
410     try:  # Start a new configure environment that reflects what we've already found
411        umf_libs = env['umf_libs']  conf = Configure(clone_env(env))
       umf_libs+=umf_libs  
    except KeyError:  
       pass  
412    
413     try:  if env['usepapi']:
414        includes = env['ufc_path']    conf.env.AppendUnique(CPPPATH = [env['papi_path']])
415        env.Append(CPPPATH = [includes,])    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])
416     except KeyError:    conf.env.AppendUnique(LIBS    = [env['papi_libs']])
417        pass    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs
418    
419     try:  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0
420        includes = env['amd_path']  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
421    
422     try:  # Add PAPI to environment env if it was found
423        lib_path = env['amd_lib_path']  if env['usepapi']:
424        env.Append(LIBPATH = [lib_path,])    env = conf.Finish()
425     except KeyError:    env.Append(CPPDEFINES = ['BLOCKPAPI'])
426        pass  else:
427      conf.Finish()
428    
429     try:  ############ MKL (optional) ####################################
       amd_libs = env['amd_libs']  
       umf_libs+=amd_libs  
    except KeyError:  
       pass  
430    
431  # ============= set TRILINOS (but only with MPI) =====================================  # Start a new configure environment that reflects what we've already found
432  if useMPI:  conf = Configure(clone_env(env))
    try:  
       includes = env['trilinos_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
433    
434     try:  if env['usemkl']:
435        lib_path = env['trilinos_lib_path']    conf.env.AppendUnique(CPPPATH = [env['mkl_path']])
436        env.Append(LIBPATH = [lib_path,])    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])
437     except KeyError:    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])
438        pass    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs
439    
440     try:  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0
441        trilinos_libs = env['trilinos_libs']  if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0
442     except KeyError:  
443        trilinos_libs = []  # Add MKL to environment env if it was found
444    if env['usemkl']:
445      env = conf.Finish()
446      env.Append(CPPDEFINES = ['MKL'])
447  else:  else:
448       trilinos_libs = []    conf.Finish()
449    
450  # ============= set blas =====================================  ############ UMFPACK (optional) ################################
 try:  
    includes = env['blas_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
451    
452  try:  # Start a new configure environment that reflects what we've already found
453     lib_path = env['blas_lib_path']  conf = Configure(clone_env(env))
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
454    
455  try:  if env['useumfpack']:
456     blas_libs = env['blas_libs']    conf.env.AppendUnique(CPPPATH = [env['ufc_path']])
457  except KeyError:    conf.env.AppendUnique(CPPPATH = [env['umf_path']])
458     blas_libs = [ ]    conf.env.AppendUnique(LIBPATH = [env['umf_lib_path']])
459      conf.env.AppendUnique(LIBS    = [env['umf_libs']])
460      conf.env.AppendUnique(CPPPATH = [env['amd_path']])
461      conf.env.AppendUnique(LIBPATH = [env['amd_lib_path']])
462      conf.env.AppendUnique(LIBS    = [env['amd_libs']])
463      conf.env.AppendUnique(CPPPATH = [env['blas_path']])
464      conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])
465      conf.env.AppendUnique(LIBS    = [env['blas_libs']])
466      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs
467      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs
468      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs
469    
470  # ========== netcdf ====================================  if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0
471  try:  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0
472     useNetCDF = env['useNetCDF']  # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?
 except KeyError:  
    useNetCDF = 'yes'  
    pass  
       
 if useNetCDF == 'yes':  
    try:  
       netCDF_libs = env['netCDF_libs']  
    except KeyError:  
       pass  
473    
474     env.Append(LIBS = netCDF_libs)  # Add UMFPACK to environment env if it was found
475     env.Append(CPPDEFINES = [ 'USE_NETCDF' ])  if env['useumfpack']:
476     try:    env = conf.Finish()
477        includes = env['netCDF_path']    env.Append(CPPDEFINES = ['UMFPACK'])
478        env.Append(CPPPATH = [includes,])  else:
479     except KeyError:    conf.Finish()
       pass  
480    
481     try:  ############ Silo (optional) ###################################
482        lib_path = env['netCDF_lib_path']  
483        env.Append(LIBPATH = [ lib_path, ])  if env['usesilo']:
484        env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path    conf = Configure(clone_env(env))
485        if IS_WINDOWS_PLATFORM :    conf.env.AppendUnique(CPPPATH = [env['silo_path']])
486           env.PrependENVPath('PATH', lib_path)    conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])
487     except KeyError:    conf.env.AppendUnique(LIBS = [env['silo_libs']])
488        pass    if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0
489      if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0
490      conf.Finish()
491    
492    # Add the path to Silo to environment env if it was found.
493    # Note that we do not add the libs since they are only needed for the
494    # escriptreader library and tools.
495    if env['usesilo']:
496      env.AppendUnique(CPPPATH = [env['silo_path']])
497      env.AppendUnique(LIBPATH = [env['silo_lib_path']])
498      env.Append(CPPDEFINES = ['HAVE_SILO'])
499    
500    ############ Add the compiler flags ############################
501    
502    # Enable debug by choosing either cc_debug or cc_optim
503    if env['usedebug']:
504      env.Append(CCFLAGS        = env['cc_debug'])
505      env.Append(CCFLAGS        = env['omp_debug'])
506  else:  else:
507     print "Warning: Installation is not configured with netCDF. Some I/O function may not be available."    env.Append(CCFLAGS        = env['cc_optim'])
508     netCDF_libs=[ ]    env.Append(CCFLAGS        = env['omp_optim'])
509    
510  # ====================== boost ======================================  # Always use cc_flags
511  try:  env.Append(CCFLAGS      = env['cc_flags'])
512     includes = env['boost_path']  env.Append(LIBS         = [env['omp_libs']])
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['boost_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
    env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    if IS_WINDOWS_PLATFORM :  
       env.PrependENVPath('PATH', lib_path)  
 except KeyError:  
    pass  
 try:  
    boost_lib = env['boost_lib']  
 except KeyError:  
    boost_lib = None  
 # ====================== python ======================================  
 try:  
    includes = env['python_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['python_lib_path']  
    env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    python_lib = env['python_lib']  
 except KeyError:  
    python_lib = None  
 # =============== documentation =======================================  
 try:  
    doxygen_path = env['doxygen_path']  
 except KeyError:  
    doxygen_path = None  
 try:  
    epydoc_path = env['epydoc_path']  
 except KeyError:  
    epydoc_path = None  
 # =============== PAPI =======================================  
 try:  
    includes = env['papi_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['papi_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    papi_libs = env['papi_libs']  
 except KeyError:  
    papi_libs = None  
 # ============= set mpi =====================================  
 if useMPI:  
    env.Append(CPPDEFINES=['PASO_MPI',])  
    try:  
       includes = env['mpi_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
    try:  
       lib_path = env['mpi_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
       env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    except KeyError:  
       pass  
    try:  
       mpi_libs = env['mpi_libs']  
    except KeyError:  
       mpi_libs = []  
513    
    try:  
       mpi_run = env['mpi_run']  
    except KeyError:  
       mpi_run = ''  
514    
515     try:  ############ Add some custom builders ##########################
        mpich_ignore_cxx_seek=env['MPICH_IGNORE_CXX_SEEK']  
        env.Append(CPPDEFINES = [ mpich_ignore_cxx_seek ] )  
    except KeyError:  
       pass  
 else:  
   mpi_libs=[]  
   mpi_run = mpi_run_default  
 # =========== zip files ===========================================  
 try:  
    includes = env['papi_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['papi_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    papi_libs = env['papi_libs']  
 except KeyError:  
    papi_libs = None  
 try:  
    papi_instrument_solver = env['papi_instrument_solver']  
 except KeyError:  
    papi_instrument_solver = None  
516    
517    py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
518    env.Append(BUILDERS = {'PyCompile' : py_builder});
519    
520  # ============= and some helpers =====================================  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
521  try:  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
    doxygen_path = env['doxygen_path']  
 except KeyError:  
    doxygen_path = None  
 try:  
    epydoc_path = env['epydoc_path']  
 except KeyError:  
    epydoc_path = None  
 try:  
    src_zipfile = env.File(env['src_zipfile'])  
 except KeyError:  
    src_zipfile = None  
 try:  
    test_zipfile = env.File(env['test_zipfile'])  
 except KeyError:  
    test_zipfile = None  
 try:  
    examples_zipfile = env.File(env['examples_zipfile'])  
 except KeyError:  
    examples_zipfile = None  
522    
523  try:  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
524     src_tarfile = env.File(env['src_tarfile'])  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
 except KeyError:  
    src_tarfile = None  
 try:  
    test_tarfile = env.File(env['test_tarfile'])  
 except KeyError:  
    test_tarfile = None  
 try:  
    examples_tarfile = env.File(env['examples_tarfile'])  
 except KeyError:  
    examples_tarfile = None  
525    
526  try:  ############ MPI (optional) ####################################
    guide_pdf = env.File(env['guide_pdf'])  
 except KeyError:  
    guide_pdf = None  
527    
528  try:  # Create a modified environment for MPI programs (identical to env if usempi=no)
529     guide_html_index = env.File('index.htm',env['guide_html'])  env_mpi = clone_env(env)
 except KeyError:  
    guide_html_index = None  
530    
531  try:  # Start a new configure environment that reflects what we've already found
532     api_epydoc = env.Dir(env['api_epydoc'])  conf = Configure(clone_env(env_mpi))
 except KeyError:  
    api_epydoc = None  
533    
534  try:  if env_mpi['usempi']:
535     api_doxygen = env.Dir(env['api_doxygen'])    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])
536  except KeyError:    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])
537     api_doxygen = None    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])
538      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs
539    
540    if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0
541    if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0
542    
543    # Add MPI to environment env_mpi if it was found
544    if env_mpi['usempi']:
545      env_mpi = conf.Finish()
546      env_mpi.Append(CPPDEFINES = ['PASO_MPI', 'MPI_NO_CPPBIND', env_mpi['MPICH_IGNORE_CXX_SEEK']])
547    else:
548      conf.Finish()
549    
550    env['usempi'] = env_mpi['usempi']
551    
552    ############ ParMETIS (optional) ###############################
553    
554    # Start a new configure environment that reflects what we've already found
555    conf = Configure(clone_env(env_mpi))
556    
557    if not env_mpi['usempi']: env_mpi['useparmetis'] = 0
558    
559    if env_mpi['useparmetis']:
560      conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])
561      conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])
562      conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])
563      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs
564    
565    if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0
566    if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0
567    
568    # Add ParMETIS to environment env_mpi if it was found
569    if env_mpi['useparmetis']:
570      env_mpi = conf.Finish()
571      env_mpi.Append(CPPDEFINES = ['USE_PARMETIS'])
572    else:
573      conf.Finish()
574    
575    env['useparmetis'] = env_mpi['useparmetis']
576    
577    ############ Now we switch on Warnings as errors ###############
578    
579    #this needs to be done after configuration because the scons test files have warnings in them
580    
581    if ((fatalwarning != "") and (env['usewarnings'])):
582      env.Append(CCFLAGS        = fatalwarning)
583      env_mpi.Append(CCFLAGS        = fatalwarning)
584    
585    ############ Summarize our environment #########################
586    
587    print ""
588    print "Summary of configuration (see ./config.log for information)"
589    print " Using python libraries"
590    print " Using numarray"
591    print " Using boost"
592    if env['usenetcdf']: print "    Using NetCDF"
593    else: print "   Not using NetCDF"
594    if env['usevtk']: print "   Using VTK"
595    else: print "   Not using VTK"
596    if env['usemkl']: print "   Using MKL"
597    else: print "   Not using MKL"
598    if env['useumfpack']: print "   Using UMFPACK"
599    else: print "   Not using UMFPACK"
600    if env['usesilo']: print "  Using Silo"
601    else: print "   Not using Silo"
602    if env['useopenmp']: print "    Using OpenMP"
603    else: print "   Not using OpenMP"
604    if env['usempi']: print "   Using MPI"
605    else: print "   Not using MPI"
606    if env['useparmetis']: print "  Using ParMETIS"
607    else: print "   Not using ParMETIS (requires MPI)"
608    if env['usepapi']: print "  Using PAPI"
609    else: print "   Not using PAPI"
610    if env['usedebug']: print " Compiling for debug"
611    else: print "   Not compiling for debug"
612    print " Installing in", prefix
613    if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"
614    else: print "   Not treating warnings as errors"
615    print ""
616    
617    ############ Delete option-dependent files #####################
618    
619    Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))
620    Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))
621    Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))
622    if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))
623    
624    
625    ############ Build the subdirectories ##########################
626    
627    from grouptest import *
628    
629    TestGroups=[]
630    
631    Export(
632      ["env",
633       "env_mpi",
634       "clone_env",
635       "IS_WINDOWS_PLATFORM",
636       "TestGroups"
637       ]
638      )
639    
 try:  
    svn_pipe = os.popen("svnversion -n .")  
    global_revision = svn_pipe.readlines()  
    svn_pipe.close()  
    global_revision = re.sub(":.*", "", global_revision[0])  
    global_revision = re.sub("[^0-9]", "", global_revision)  
 except:  
    global_revision="-1"  
    print "Warning: unable to recover global revsion number."  
 if global_revision == "": global_revision="0"  
 print "Revision number is %s."%global_revision  
 env.Append(CPPDEFINES = "SVN_VERSION="+global_revision)  
   
 # Python install - esys __init__.py  
 init_target = env.Command(pyinstall+'/__init__.py', None, Touch('$TARGET'))  
   
 # FIXME: exinstall and friends related to examples are not working.  
 build_target = env.Alias('build',[libinstall,incinstall,pyinstall,init_target])  
   
 env.Default(build_target)  
   
 # Zipgets  
 env.Alias('release_src',[ src_zipfile, src_tarfile ])  
 env.Alias('release_tests',[ test_zipfile, test_tarfile])  
 env.Alias('release_examples',[ examples_zipfile, examples_tarfile])  
 env.Alias('examples_zipfile',examples_zipfile)  
 env.Alias('examples_tarfile',examples_tarfile)  
 env.Alias('api_epydoc',api_epydoc)  
 env.Alias('api_doxygen',api_doxygen)  
 env.Alias('guide_html_index',guide_html_index)  
 env.Alias('guide_pdf', guide_pdf)  
 env.Alias('docs',[ 'release_examples', 'guide_pdf', api_epydoc, api_doxygen, guide_html_index])  
 env.Alias('release', ['release_src', 'release_tests', 'docs'])  
   
 env.Alias('build_tests',build_target)    # target to build all C++ tests  
 env.Alias('build_py_tests',build_target) # target to build all python tests  
 env.Alias('build_all_tests', [ 'build_tests', 'build_py_tests' ] ) # target to build all python tests  
 env.Alias('run_tests', 'build_tests')   # target to run all C++ test  
 env.Alias('py_tests', 'build_py_tests') # taget to run all released python tests  
 env.Alias('all_tests', ['run_tests', 'py_tests']) # target to run all C++ and released python tests  
   
   
 # Allow sconscripts to see the env  
 Export(["IS_WINDOWS_PLATFORM", "env", "incinstall", "libinstall", "pyinstall", "dodebug", "mkl_libs", "scsl_libs", "umf_libs", "blas_libs", "netCDF_libs", "useNetCDF", "mpi_run",  
     "boost_lib", "python_lib", "doxygen_path", "epydoc_path", "papi_libs",  
         "sys_libs", "test_zipfile", "src_zipfile", "test_tarfile", "src_tarfile", "examples_tarfile", "examples_zipfile", "trilinos_libs", "mpi_libs", "papi_instrument_solver",  
         "guide_pdf", "guide_html_index", "api_epydoc", "api_doxygen", "useMPI" ])  
   
 # End initialisation section  
 # Begin configuration section  
 # adds this file and the scons option directore to the source tar  
 release_srcfiles=[env.File('SConstruct'),env.Dir('lib'),env.Dir('include'),]+[ env.File(x) for x in glob.glob('scons/*.py') ]  
 release_testfiles=[env.File('README_TESTS'),]  
 env.Zip(src_zipfile, release_srcfiles)  
 env.Zip(test_zipfile, release_testfiles)  
 try:  
    env.Tar(src_tarfile, release_srcfiles)  
    env.Tar(test_tarfile, release_testfiles)  
 except AttributeError:  
    pass  
 # Insert new components to be build here  
 # FIXME: might be nice to replace this verbosity with a list of targets and some  
 # FIXME: nifty python to create the lengthy but very similar env.Sconscript lines  
 # Third Party libraries  
640  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
641  # C/C++ Libraries  env.SConscript(dirs = ['tools/libescriptreader/src'], build_dir='build/$PLATFORM/tools/libescriptreader', duplicate=0)
642  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)
 # bruce is removed for now as it doesn't really do anything  
 # env.SConscript(dirs = ['bruce/src'], build_dir='build/$PLATFORM/bruce', duplicate=0)  
643  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)
644  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)
645  env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)
# Line 917  env.SConscript(dirs = ['doc'], build_dir Line 648  env.SConscript(dirs = ['doc'], build_dir
648  env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)
649  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)
650  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)
651  #env.SConscript(dirs = ['../test'], build_dir='../test/build', duplicate=0)  env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)
652    env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)
653    
654    
655    ############ Remember what optimizations we used ###############
656    
657    remember_list = []
658    
659    if env['usedebug']:
660      remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))
661    
662    if env['usempi']:
663      remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))
664    
665    if env['omp_optim'] != '':
666      remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))
667    
668    env.Alias('remember_options', remember_list)
669    
670    ############ Targets to build and install libraries ############
671    
672    target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))
673    env.Alias('target_init', [target_init])
674    
675    # The headers have to be installed prior to build in order to satisfy #include <paso/Common.h>
676    env.Alias('build_esysUtils', ['target_install_esysUtils_headers', 'target_esysUtils_a'])
677    env.Alias('install_esysUtils', ['build_esysUtils', 'target_install_esysUtils_a'])
678    
679    env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])
680    env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])
681    
682  syslib_install_target = env.installDirectory(sys_libinstall,libinstall)  env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])
683  syspy_install_target = env.installDirectory(sys_pyinstall,pyinstall,recursive=True)  env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])
684    
685    env.Alias('build_finley', ['target_install_finley_headers', 'target_finley_so', 'target_finleycpp_so'])
686    env.Alias('install_finley', ['build_finley', 'target_install_finley_so', 'target_install_finleycpp_so', 'target_install_finley_py'])
687    
688    # Now gather all the above into a couple easy targets: build_all and install_all
689    build_all_list = []
690    build_all_list += ['build_esysUtils']
691    build_all_list += ['build_paso']
692    build_all_list += ['build_escript']
693    build_all_list += ['build_finley']
694    if env['usempi']:       build_all_list += ['target_pythonMPI_exe']
695    if not IS_WINDOWS_PLATFORM: build_all_list += ['target_finley_wrapper']
696    if env['usesilo']:  build_all_list += ['target_escript2silo']
697    env.Alias('build_all', build_all_list)
698    
699    install_all_list = []
700    install_all_list += ['target_init']
701    install_all_list += ['install_esysUtils']
702    install_all_list += ['install_paso']
703    install_all_list += ['install_escript']
704    install_all_list += ['install_finley']
705    install_all_list += ['target_install_pyvisi_py']
706    install_all_list += ['target_install_modellib_py']
707    install_all_list += ['target_install_pycad_py']
708    if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']
709    if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_finley_wrapper']
710    if env['usesilo']:  install_all_list += ['target_install_escript2silo']
711    install_all_list += ['remember_options']
712    env.Alias('install_all', install_all_list)
713    
714    # Default target is install
715    env.Default('install_all')
716    
717    ############ Targets to build and run the test suite ###########
718    
719    env.Alias('build_cppunittest', ['target_install_cppunittest_headers', 'target_cppunittest_a'])
720    env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])
721    env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])
722    env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])
723    
724    ############ Targets to build the documentation ################
725    
726    env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])
727    
728    if not IS_WINDOWS_PLATFORM:
729       try:
730        utest=open("utest.sh","w")
731        utest.write(makeHeader())
732        for tests in TestGroups:
733            utest.write(tests.makeString())
734        utest.close()
735        print "utest.sh written"
736       except IOError:
737        print "Error attempting to write unittests file."
738        sys.exit(1)
739    
 install_target = env.Alias("install", env.Flatten([syslib_install_target, syspy_install_target]) )  

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