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revision 1705 by ksteube, Thu Aug 14 05:56:40 2008 UTC revision 2294 by jfenwick, Mon Mar 2 03:44:27 2009 UTC
# Line 1  Line 1 
1  #         Copyright 2006 by ACcESS MNRF  
2    ########################################################
3    #
4    # Copyright (c) 2003-2008 by University of Queensland
5    # Earth Systems Science Computational Center (ESSCC)
6    # http://www.uq.edu.au/esscc
7  #  #
8  #              http://www.access.edu.au  # Primary Business: Queensland, Australia
9  #       Primary Business: Queensland, Australia  # Licensed under the Open Software License version 3.0
10  #  Licensed under the Open Software License version 3.0  # http://www.opensource.org/licenses/osl-3.0.php
11  #     http://www.opensource.org/licenses/osl-3.0.php  #
12    ########################################################
13    
14    
15  EnsureSConsVersion(0,96,91)  EnsureSConsVersion(0,96,91)
16  EnsurePythonVersion(2,3)  EnsurePythonVersion(2,3)
17    
18  import sys, os, re, socket  import sys, os, re, socket, platform
19    
20  # Add our extensions  # Add our extensions
21  if os.path.isdir('scons'): sys.path.append('scons')  if os.path.isdir('scons'): sys.path.append('scons')
# Line 30  prefix = ARGUMENTS.get('prefix', Dir('#. Line 37  prefix = ARGUMENTS.get('prefix', Dir('#.
37  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])
38  tmp = os.path.join("scons",hostname+"_options.py")  tmp = os.path.join("scons",hostname+"_options.py")
39  options_file = ARGUMENTS.get('options_file', tmp)  options_file = ARGUMENTS.get('options_file', tmp)
40  if not os.path.isfile(options_file): options_file = False  if not os.path.isfile(options_file):
41      options_file = False
42      print "Options file not found (expected '%s')" % tmp
43    else:
44      print "Options file is", options_file
45    
46  # Load options file and command-line arguments  # Load options file and command-line arguments
47  opts = Options(options_file, ARGUMENTS)  opts = Options(options_file, ARGUMENTS)
# Line 41  opts.AddOptions( Line 52  opts.AddOptions(
52  # Where to install esys stuff  # Where to install esys stuff
53    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),
54    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),
55      ('bininstall', 'where the esys binaries will be installed',            os.path.join(prefix,'bin')),
56    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),
57    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),
58  # Compilation options  # Compilation options
# Line 48  opts.AddOptions( Line 60  opts.AddOptions(
60    BoolOption('usedebug', 'Do you want a debug build?', 'no'),    BoolOption('usedebug', 'Do you want a debug build?', 'no'),
61    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),
62    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),
63      ('win_cc_name', 'windows C compiler name if needed', 'msvc'),
64    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below
65    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),
66    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),
# Line 56  opts.AddOptions( Line 69  opts.AddOptions(
69    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),
70    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),
71    ('cc_extra', 'Extra C/C++ flags', ''),    ('cc_extra', 'Extra C/C++ flags', ''),
72      ('ld_extra', 'Extra linker flags', ''),
73    ('sys_libs', 'System libraries to link with', []),    ('sys_libs', 'System libraries to link with', []),
74    ('ar_flags', 'Static library archiver flags to use', ''),    ('ar_flags', 'Static library archiver flags to use', ''),
75    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'yes'),    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'no'),
76    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'yes'),    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),
77      BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),
78      ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),
79  # Python  # Python
80    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),
81    ('python_lib_path', 'Path to Python libs', usr_lib),    ('python_lib_path', 'Path to Python libs', usr_lib),
# Line 99  opts.AddOptions( Line 115  opts.AddOptions(
115    ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),    ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),
116    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),
117  # UMFPACK  # UMFPACK
118    BoolOption('useumfpack', 'switch on/off the usage of UMFPACK', 'yes'),    BoolOption('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),
119    ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),    ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),
120    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),
121    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),
122    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),
123    # Silo
124      BoolOption('usesilo', 'switch on/off the usage of Silo', 'yes'),
125      ('silo_path', 'Path to Silo includes', '/usr/include'),
126      ('silo_lib_path', 'Path to Silo libs', usr_lib),
127      ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
128  # AMD (used by UMFPACK)  # AMD (used by UMFPACK)
129    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),
130    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('amd_lib_path', 'Path to AMD libs', usr_lib),
# Line 111  opts.AddOptions( Line 132  opts.AddOptions(
132  # BLAS (used by UMFPACK)  # BLAS (used by UMFPACK)
133    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),    ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),
134    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    ('blas_lib_path', 'Path to BLAS libs', usr_lib),
135    ('blas_libs', 'BLAS libraries to link with', ['blas'])    ('blas_libs', 'BLAS libraries to link with', ['blas']),
136    # An option for specifying the compiler tools set (see windows branch).
137      ('tools_names', 'allow control over the tools in the env setup', ['intelc']),
138    # finer control over library building, intel aggressive global optimisation
139    # works with dynamic libraries on windows.
140      ('share_esysUtils', 'control static or dynamic esysUtils lib', False),
141      ('share_paso', 'control static or dynamic paso lib', False)
142  )  )
143    
144  ############ Specify which compilers to use ####################  ############ Specify which compilers to use ####################
# Line 120  opts.AddOptions( Line 147  opts.AddOptions(
147  # failing to find the compilers.  This warning can be safely ignored.  # failing to find the compilers.  This warning can be safely ignored.
148    
149  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
150        env = Environment(tools = ['default', 'msvc'], options = opts)        env = Environment(options = opts)
151          env = Environment(tools = ['default'] + env['tools_names'],
152                            options = opts)
153  else:  else:
154     if socket.gethostname().split('.')[0] == 'service0':     if socket.gethostname().split('.')[0] == 'service0':
155        env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default', 'intelc'], options = opts)
# Line 141  if env['useMPI']: env['usempi'] = 1 Line 170  if env['useMPI']: env['usempi'] = 1
170  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)
171  # For both C and C++ you get: cc_flags and either the optim flags or debug flags  # For both C and C++ you get: cc_flags and either the optim flags or debug flags
172    
173    sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.
174    
175  if env["CC"] == "icc":  if env["CC"] == "icc":
176    # Intel compilers    # Intel compilers
177    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
178    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"    cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"
179    cc_debug      = "-g -O0 -UDOASSERT -DDOPROF -DBOUNDS_CHECK"    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
180    omp_optim     = "-openmp -openmp_report0"    omp_optim     = "-openmp -openmp_report0"
181    omp_debug     = "-openmp -openmp_report0"    omp_debug     = "-openmp -openmp_report0"
182    omp_libs      = ['guide', 'pthread']    omp_libs      = ['guide', 'pthread']
183    pedantic      = ""    pedantic      = ""
184      fatalwarning      = ""        # Switch to turn warnings into errors
185      sysheaderopt      = ""
186  elif env["CC"] == "gcc":  elif env["CC"] == "gcc":
187    # GNU C on any system    # GNU C on any system
188    cc_flags      = "-fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER"    cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"
189    #the long long warning occurs on the Mac
190    cc_optim      = "-O3"    cc_optim      = "-O3"
191    cc_debug      = "-g -O0 -UDOASSERT -DDOPROF -DBOUNDS_CHECK"    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
192    omp_optim     = ""    omp_optim     = ""
193    omp_debug     = ""    omp_debug     = ""
194    omp_libs      = []    omp_libs      = []
195    pedantic      = "-pedantic-errors -Wno-long-long"    pedantic      = "-pedantic-errors -Wno-long-long"
196      fatalwarning      = "-Werror"
197      sysheaderopt      = "-isystem "
198  elif env["CC"] == "cl":  elif env["CC"] == "cl":
199    # Microsoft Visual C on Windows    # Microsoft Visual C on Windows
200    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"
# Line 168  elif env["CC"] == "cl": Line 204  elif env["CC"] == "cl":
204    omp_debug     = ""    omp_debug     = ""
205    omp_libs      = []    omp_libs      = []
206    pedantic      = ""    pedantic      = ""
207      fatalwarning      = ""
208      sysheaderopt      = ""
209    elif env["CC"] == "icl":
210      # intel C on Windows, see windows_intelc_options.py for a start
211      pedantic      = ""
212      fatalwarning      = ""
213      sysheaderopt      = ""
214    
215    
216  # If not specified in hostname_options.py then set them here  # If not specified in hostname_options.py then set them here
217  if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags
# Line 177  if env["omp_optim"]    == "-DEFAULT_4": env Line 221  if env["omp_optim"]    == "-DEFAULT_4": env
221  if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug
222  if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs
223    
224    #set up the autolazy values
225    if env['forcelazy']    != "leave_alone":
226      if env['forcelazy'] == 'on':
227        env.Append(CPPDEFINES='FAUTOLAZYON')
228      else:
229         if env['forcelazy'] == 'off':
230        env.Append(CPPDEFINES='FAUTOLAZYOFF')
231    
232  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty
233  if not env["useopenmp"]:  if not env["useopenmp"]:
234    env['omp_optim'] = ""    env['omp_optim'] = ""
# Line 221  except KeyError: pass Line 273  except KeyError: pass
273  env.PrependENVPath('PYTHONPATH', prefix)  env.PrependENVPath('PYTHONPATH', prefix)
274  env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])  env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
275    
276    env['ENV']['ESCRIPT_ROOT'] = prefix
277    
278  ############ Set up paths for Configure() ######################  ############ Set up paths for Configure() ######################
279    
280  # Make a copy of an environment  # Make a copy of an environment
# Line 233  def clone_env(env): Line 287  def clone_env(env):
287  env.Append(CPPPATH      = [Dir('include')])  env.Append(CPPPATH      = [Dir('include')])
288    
289  # Add cc option -L<Escript>/trunk/lib  # Add cc option -L<Escript>/trunk/lib
290  env.Append(LIBPATH      = [Dir('lib')])  env.Append(LIBPATH      = [Dir(env['libinstall'])])
   
 env.Append(CPPDEFINES = ['ESCRIPT_EXPORTS', 'FINLEY_EXPORTS'])  
291    
292  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])
293    if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])
294    
295  if env['usepedantic']: env.Append(CCFLAGS = pedantic)  if env['usepedantic']: env.Append(CCFLAGS = pedantic)
296    
# Line 245  if env['usepedantic']: env.Append(CCFLAG Line 298  if env['usepedantic']: env.Append(CCFLAG
298  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
299    env.PrependENVPath('PATH',    [env['boost_lib_path']])    env.PrependENVPath('PATH',    [env['boost_lib_path']])
300    env.PrependENVPath('PATH',    [env['libinstall']])    env.PrependENVPath('PATH',    [env['libinstall']])
301      if not env['share_esysUtils'] :
302        env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
303      if not env['share_paso'] :
304        env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
305    
306    if env['usenetcdf']:    if env['usenetcdf']:
307      env.PrependENVPath('PATH',  [env['netCDF_lib_path']])      env.PrependENVPath('PATH',  [env['netCDF_lib_path']])
308    
# Line 275  conf = Configure(clone_env(env)) Line 333  conf = Configure(clone_env(env))
333    
334  # Test that the compiler is working  # Test that the compiler is working
335  if not conf.CheckFunc('printf'):  if not conf.CheckFunc('printf'):
336    print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])     print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])
337    sys.exit(1)     sys.exit(1)
338    
339  if not conf.CheckFunc('gethostname'):  if conf.CheckFunc('gethostname'):
340    env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])    conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])
341    
342  ############ python libraries (required) #######################  ############ python libraries (required) #######################
343    
344  conf.env.AppendUnique(CPPPATH       = [env['python_path']])  
345    if not sysheaderopt =="":
346      conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])
347    else:
348      conf.env.AppendUnique(CPPPATH     = [env['python_path']])
349    
350  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])
351  conf.env.AppendUnique(LIBS      = [env['python_libs']])  conf.env.AppendUnique(LIBS      = [env['python_libs']])
352    
353    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs
354    
355  if not conf.CheckCHeader('Python.h'):  if not conf.CheckCHeader('Python.h'):
356    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])
357    sys.exit(1)    sys.exit(1)
358  if not conf.CheckFunc('Py_Main'):  if not conf.CheckFunc('Py_Exit'):
359    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])
360    sys.exit(1)    sys.exit(1)
361    
362  ############ boost (required) ##################################  ############ boost (required) ##################################
363    
364  conf.env.AppendUnique(CPPPATH       = [env['boost_path']])  if not sysheaderopt =="":
365      conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))
366    else:
367      conf.env.AppendUnique(CPPPATH     = [env['boost_path']])
368    
369  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])
370  conf.env.AppendUnique(LIBS      = [env['boost_libs']])  conf.env.AppendUnique(LIBS      = [env['boost_libs']])
371    
372    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs
373    
374  if not conf.CheckCXXHeader('boost/python.hpp'):  if not conf.CheckCXXHeader('boost/python.hpp'):
375    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])
376    sys.exit(1)    sys.exit(1)
377    
378  if not conf.CheckFunc('PyObject_SetAttr'):  if not conf.CheckFunc('PyObject_SetAttr'):
379    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])
380    sys.exit(1)    sys.exit(1)
# Line 331  if env['usenetcdf']: Line 403  if env['usenetcdf']:
403    conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])    conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])
404    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])
405    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])
406      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs
407    
408  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0
409  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0
# Line 351  if env['usepapi']: Line 424  if env['usepapi']:
424    conf.env.AppendUnique(CPPPATH = [env['papi_path']])    conf.env.AppendUnique(CPPPATH = [env['papi_path']])
425    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])
426    conf.env.AppendUnique(LIBS    = [env['papi_libs']])    conf.env.AppendUnique(LIBS    = [env['papi_libs']])
427      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs
428    
429  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0
430  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0
# Line 371  if env['usemkl']: Line 445  if env['usemkl']:
445    conf.env.AppendUnique(CPPPATH = [env['mkl_path']])    conf.env.AppendUnique(CPPPATH = [env['mkl_path']])
446    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])
447    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])
448      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs
449    
450  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0
451  if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0
# Line 398  if env['useumfpack']: Line 473  if env['useumfpack']:
473    conf.env.AppendUnique(CPPPATH = [env['blas_path']])    conf.env.AppendUnique(CPPPATH = [env['blas_path']])
474    conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])
475    conf.env.AppendUnique(LIBS    = [env['blas_libs']])    conf.env.AppendUnique(LIBS    = [env['blas_libs']])
476      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs
477      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs
478      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs
479    
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
480  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0
481    if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0
482    # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?
483    
484  # Add UMFPACK to environment env if it was found  # Add UMFPACK to environment env if it was found
485  if env['useumfpack']:  if env['useumfpack']:
# Line 409  if env['useumfpack']: Line 488  if env['useumfpack']:
488  else:  else:
489    conf.Finish()    conf.Finish()
490    
491    ############ Silo (optional) ###################################
492    
493    if env['usesilo']:
494      conf = Configure(clone_env(env))
495      conf.env.AppendUnique(CPPPATH = [env['silo_path']])
496      conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])
497      conf.env.AppendUnique(LIBS = [env['silo_libs']])
498      if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0
499      if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0
500      conf.Finish()
501    
502    # Add the path to Silo to environment env if it was found.
503    # Note that we do not add the libs since they are only needed for the
504    # escriptreader library and tools.
505    if env['usesilo']:
506      env.AppendUnique(CPPPATH = [env['silo_path']])
507      env.AppendUnique(LIBPATH = [env['silo_lib_path']])
508      env.Append(CPPDEFINES = ['HAVE_SILO'])
509    
510  ############ Add the compiler flags ############################  ############ Add the compiler flags ############################
511    
512  # Enable debug by choosing either cc_debug or cc_optim  # Enable debug by choosing either cc_debug or cc_optim
# Line 423  else: Line 521  else:
521  env.Append(CCFLAGS      = env['cc_flags'])  env.Append(CCFLAGS      = env['cc_flags'])
522  env.Append(LIBS         = [env['omp_libs']])  env.Append(LIBS         = [env['omp_libs']])
523    
524    
525    ############ Add some custom builders ##########################
526    
527    py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
528    env.Append(BUILDERS = {'PyCompile' : py_builder});
529    
530    runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
531    env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
532    
533    runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
534    env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
535    
536  ############ MPI (optional) ####################################  ############ MPI (optional) ####################################
537    
538  # Create a modified environment for MPI programs (identical to env if usempi=no)  # Create a modified environment for MPI programs (identical to env if usempi=no)
# Line 435  if env_mpi['usempi']: Line 545  if env_mpi['usempi']:
545    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])
546    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])
547    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])
548      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs
549    
550  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0
551  if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0
# Line 459  if env_mpi['useparmetis']: Line 570  if env_mpi['useparmetis']:
570    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])    conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])
571    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])
572    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])
573      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs
574    
575  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0
576  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0
# Line 472  else: Line 584  else:
584    
585  env['useparmetis'] = env_mpi['useparmetis']  env['useparmetis'] = env_mpi['useparmetis']
586    
587    ############ Now we switch on Warnings as errors ###############
588    
589    #this needs to be done after configuration because the scons test files have warnings in them
590    
591    if ((fatalwarning != "") and (env['usewarnings'])):
592      env.Append(CCFLAGS        = fatalwarning)
593      env_mpi.Append(CCFLAGS        = fatalwarning)
594    
595  ############ Summarize our environment #########################  ############ Summarize our environment #########################
596    
597  print ""  print ""
# Line 487  if env['usemkl']: print "  Using MKL" Line 607  if env['usemkl']: print "  Using MKL"
607  else: print "   Not using MKL"  else: print "   Not using MKL"
608  if env['useumfpack']: print "   Using UMFPACK"  if env['useumfpack']: print "   Using UMFPACK"
609  else: print "   Not using UMFPACK"  else: print "   Not using UMFPACK"
610    if env['usesilo']: print "  Using Silo"
611    else: print "   Not using Silo"
612  if env['useopenmp']: print "    Using OpenMP"  if env['useopenmp']: print "    Using OpenMP"
613  else: print "   Not using OpenMP"  else: print "   Not using OpenMP"
614  if env['usempi']: print "   Using MPI"  if env['usempi']: print "   Using MPI"
# Line 498  else: print "  Not using PAPI" Line 620  else: print "  Not using PAPI"
620  if env['usedebug']: print " Compiling for debug"  if env['usedebug']: print " Compiling for debug"
621  else: print "   Not compiling for debug"  else: print "   Not compiling for debug"
622  print " Installing in", prefix  print " Installing in", prefix
623    if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"
624    else: print "   Not treating warnings as errors"
625  print ""  print ""
626    
627  ############ Add some custom builders ##########################  ############ Delete option-dependent files #####################
628    
629  py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))
630  env.Append(BUILDERS = {'PyCompile' : py_builder});  Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))
631    Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))
632    if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))
633    
 runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  
 env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  
634    
635  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  ############ Build the subdirectories ##########################
 env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  
636    
637  ############ Build the desired subdirectories ##################  from grouptest import *
638    
639  Export(["env", "env_mpi", "clone_env"])  TestGroups=[]
640    
641    Export(
642      ["env",
643       "env_mpi",
644       "clone_env",
645       "IS_WINDOWS_PLATFORM",
646       "TestGroups"
647       ]
648      )
649    
650  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
651    env.SConscript(dirs = ['tools/libescriptreader/src'], build_dir='build/$PLATFORM/tools/libescriptreader', duplicate=0)
652  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)
653  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)
654  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)
# Line 525  env.SConscript(dirs = ['doc'], build_dir Line 658  env.SConscript(dirs = ['doc'], build_dir
658  env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)
659  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)
660  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)
661    env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)
662    env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)
663    
664    
665  ############ Remember what optimizations we used ###############  ############ Remember what optimizations we used ###############
666    
# Line 532  remember_list = [] Line 668  remember_list = []
668    
669  if env['usedebug']:  if env['usedebug']:
670    remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))    remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))
 else:  
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Delete('$TARGET'))  
671    
672  if env['usempi']:  if env['usempi']:
673    remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))    remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))
 else:  
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Delete('$TARGET'))  
674    
675  if env['omp_optim'] != '':  if env['omp_optim'] != '':
676    remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))    remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))
 else:  
   remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Delete('$TARGET'))  
677    
678  env.Alias('remember_options', remember_list)  env.Alias('remember_options', remember_list)
679    
# Line 571  build_all_list += ['build_esysUtils'] Line 701  build_all_list += ['build_esysUtils']
701  build_all_list += ['build_paso']  build_all_list += ['build_paso']
702  build_all_list += ['build_escript']  build_all_list += ['build_escript']
703  build_all_list += ['build_finley']  build_all_list += ['build_finley']
704  if env['usempi']: build_all_list += ['target_pythonMPI_exe']  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']
705    if not IS_WINDOWS_PLATFORM: build_all_list += ['target_escript_wrapper']
706    if env['usesilo']:  build_all_list += ['target_escript2silo']
707  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
708    
709  install_all_list = []  install_all_list = []
# Line 583  install_all_list += ['install_finley'] Line 715  install_all_list += ['install_finley']
715  install_all_list += ['target_install_pyvisi_py']  install_all_list += ['target_install_pyvisi_py']
716  install_all_list += ['target_install_modellib_py']  install_all_list += ['target_install_modellib_py']
717  install_all_list += ['target_install_pycad_py']  install_all_list += ['target_install_pycad_py']
718  if env['usempi']: install_all_list += ['target_install_pythonMPI_exe']  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']
719    if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_escript_wrapper']
720    if env['usesilo']:  install_all_list += ['target_install_escript2silo']
721  install_all_list += ['remember_options']  install_all_list += ['remember_options']
722  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
723    
# Line 596  env.Alias('build_cppunittest', ['target_ Line 730  env.Alias('build_cppunittest', ['target_
730  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])
731  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])
732  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])
733    env.Alias('build_full',['install_all','build_tests','build_py_tests'])
734    
735  ############ Targets to build the documentation ################  ############ Targets to build the documentation ################
736    
737  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])
738    
739    if not IS_WINDOWS_PLATFORM:
740       try:
741        utest=open("utest.sh","w")
742        build_platform=os.name      #Sometimes Mac python says it is posix
743        if (build_platform=='posix') and platform.system()=="Darwin":
744            build_platform='darwin'
745        utest.write(GroupTest.makeHeader(build_platform))
746        for tests in TestGroups:
747            utest.write(tests.makeString())
748        utest.close()
749        print "utest.sh written"
750       except IOError:
751        print "Error attempting to write unittests file."
752        sys.exit(1)
753    

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