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revision 706 by gross, Sat Apr 8 16:13:02 2006 UTC revision 1705 by ksteube, Thu Aug 14 05:56:40 2008 UTC
# Line 1  Line 1 
1  #          Copyright 2006 by ACcESS MNRF                    #         Copyright 2006 by ACcESS MNRF
 #                                                            
 #              http://www.access.edu.au                      
 #       Primary Business: Queensland, Australia              
 #  Licensed under the Open Software License version 3.0      
 #     http://www.opensource.org/licenses/osl-3.0.php        
 #                                                            
 #  
2  #  #
3    #              http://www.access.edu.au
4    #       Primary Business: Queensland, Australia
5    #  Licensed under the Open Software License version 3.0
6    #     http://www.opensource.org/licenses/osl-3.0.php
7    
 # top-level Scons configuration file for all esys13 modules  
 # Begin initialisation Section  
 # all of this section just intialises default environments and helper  
 # scripts. You shouldn't need to modify this section.  
8  EnsureSConsVersion(0,96,91)  EnsureSConsVersion(0,96,91)
9  EnsurePythonVersion(2,3)  EnsurePythonVersion(2,3)
10    
11  # import tools:  import sys, os, re, socket
12  import glob  
 import sys, os  
13  # Add our extensions  # Add our extensions
14  if sys.path.count('scons')==0: sys.path.append('scons')  if os.path.isdir('scons'): sys.path.append('scons')
15  import scons_extensions  import scons_extensions
16    
17  # Default options and options help text  # Use /usr/lib64 if available, else /usr/lib
18  # These are defaults and can be overridden using command line arguments or an options file.  usr_lib = '/usr/lib'
19  # if the options_file or ARGUMENTS do not exist then the ones listed as default here are used  if os.path.isfile('/usr/lib64/libc.so'): usr_lib = '/usr/lib64'
20  # DO NOT CHANGE THEM HERE  
21  if ARGUMENTS.get('options_file',0):  # The string python2.4 or python2.5
22     options_file = ARGUMENTS.get('options_file',0)  python_version = 'python%s.%s' % (sys.version_info[0], sys.version_info[1])
23  else:  
24     import socket  # MS Windows support, many thanks to PH
25     from string import ascii_letters,digits  IS_WINDOWS_PLATFORM = (os.name== "nt")
    hostname=""  
    for s in socket.gethostname().split('.')[0]:  
       if s in ascii_letters+digits:  
          hostname+=s  
       else:  
          hostname+="_"  
    options_file = "scons/"+hostname+"_options.py"  
26    
27    prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)
28    
29    # Read configuration options from file scons/<hostname>_options.py
30    hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])
31    tmp = os.path.join("scons",hostname+"_options.py")
32    options_file = ARGUMENTS.get('options_file', tmp)
33    if not os.path.isfile(options_file): options_file = False
34    
35    # Load options file and command-line arguments
36  opts = Options(options_file, ARGUMENTS)  opts = Options(options_file, ARGUMENTS)
37    
38    ############ Load build options ################################
39    
40  opts.AddOptions(  opts.AddOptions(
41  # Where to install esys stuff  # Where to install esys stuff
42    ('incinstall', 'where the esys headers will be installed', Dir('#.').abspath+'/include'),    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),
43    ('libinstall', 'where the esys libraries will be installed', Dir('#.').abspath+'/lib'),    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),
44    ('pyinstall', 'where the esys python modules will be installed', Dir('#.').abspath),    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),
45    ('src_zipfile', 'the source zip file will be installed.', Dir('#.').abspath+"/release/escript_src.zip"),    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),
   ('test_zipfile', 'the test zip file will be installed.', Dir('#.').abspath+"/release/escript_src_tests.zip"),  
   ('src_tarfile', 'the source tar file will be installed.', Dir('#.').abspath+"/release/escript_src.tar.gz"),  
   ('test_tarfile', 'the test tar file will be installed.', Dir('#.').abspath+"/release/escript_src_tests.tar.gz"),  
   ('doc', 'where the doc files will be installed', Dir('#.').abspath+'/release/doc'),  
   
46  # Compilation options  # Compilation options
47    BoolOption('dodebug', 'Do you want a debug build?', 'no'),    BoolOption('dodebug', 'For backwards compatibility', 'no'),
48    ('options_file', "Optional file containing preferred options. Ignored if it doesn't exist (default: scons/hostname_options.py)", options_file),    BoolOption('usedebug', 'Do you want a debug build?', 'no'),
49    ('cc_defines','C/C++ defines to use', None),    BoolOption('usevtk', 'Do you want to use VTK?', 'yes'),
50    ('cc_flags','C compiler flags to use (Release build)', '-O3 -std=c99 -ffast-math -fpic -Wno-unknown-pragmas'),    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),
51    ('cc_flags_debug', 'C compiler flags to use (Debug build)', '-g -O0 -ffast-math -std=c99 -fpic -Wno-unknown-pragmas'),    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below
52    ('cxx_flags', 'C++ compiler flags to use (Release build)', '--no-warn -ansi'),    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),
53    ('cxx_flags_debug', 'C++ compiler flags to use (Debug build)', '--no-warn -ansi -DDOASSERT -DDOPROF'),    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),
54    ('ar_flags', 'Static library archiver flags to use', None),    ('cc_debug', 'C compiler debug flags to use', '-DEFAULT_3'),
55    ('sys_libs', 'System libraries to link with', None),    ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),
56    ('tar_flags','flags for zip files','-c -z'),    ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),
57  # MKL    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),
58    PathOption('mkl_path', 'Path to MKL includes', None),    ('cc_extra', 'Extra C/C++ flags', ''),
59    PathOption('mkl_lib_path', 'Path to MKL libs', None),    ('sys_libs', 'System libraries to link with', []),
60    ('mkl_libs', 'MKL libraries to link with', None),    ('ar_flags', 'Static library archiver flags to use', ''),
61  # SCSL    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'yes'),
62    PathOption('scsl_path', 'Path to SCSL includes', None),    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'yes'),
   PathOption('scsl_lib_path', 'Path to SCSL libs', None),  
   ('scsl_libs', 'SCSL libraries to link with', None),  
 # UMFPACK  
   PathOption('umf_path', 'Path to UMF includes', None),  
   PathOption('umf_lib_path', 'Path to UMF libs', None),  
   ('umf_libs', 'UMF libraries to link with', None),  
63  # Python  # Python
64  # locations of include files for python    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),
65    PathOption('python_path', 'Path to Python includes', '/usr/include/python%s.%s'%(sys.version_info[0],sys.version_info[1])),    ('python_lib_path', 'Path to Python libs', usr_lib),
66    PathOption('python_lib_path', 'Path to Python libs', '/usr/lib'),    ('python_libs', 'Python libraries to link with', [python_version]),
67    ('python_lib', 'Python libraries to link with', ["python%s.%s"%(sys.version_info[0],sys.version_info[1]),]),    ('python_cmd', 'Python command', 'python'),
68  # Boost  # Boost
69    PathOption('boost_path', 'Path to Boost includes', '/usr/include'),    ('boost_path', 'Path to Boost includes', '/usr/include'),
70    PathOption('boost_lib_path', 'Path to Boost libs', '/usr/lib'),    ('boost_lib_path', 'Path to Boost libs', usr_lib),
71    ('boost_lib', 'Boost libraries to link with', ['boost_python',]),    ('boost_libs', 'Boost libraries to link with', ['boost_python']),
72  # Doc building  # NetCDF
73    PathOption('doxygen_path', 'Path to Doxygen executable', None),    BoolOption('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),
74    PathOption('epydoc_path', 'Path to Epydoc executable', None),    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),
75    PathOption('epydoc_pythonpath', 'Path to Epydoc python files', None),    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),
76      ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),
77    # MPI
78      BoolOption('useMPI', 'For backwards compatibility', 'no'),
79      BoolOption('usempi', 'Compile parallel version using MPI', 'no'),
80      ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),
81      ('mpi_path', 'Path to MPI includes', '/usr/include'),
82      ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),
83      ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),
84      ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),
85    # ParMETIS
86      BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),
87      ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),
88      ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),
89      ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),
90  # PAPI  # PAPI
91    PathOption('papi_path', 'Path to PAPI includes', None),    BoolOption('usepapi', 'switch on/off the usage of PAPI', 'no'),
92    PathOption('papi_lib_path', 'Path to PAPI libs', None),    ('papi_path', 'Path to PAPI includes', '/usr/include'),
93    ('papi_libs', 'PAPI libraries to link with', None),    ('papi_lib_path', 'Path to PAPI libs', usr_lib),
94      ('papi_libs', 'PAPI libraries to link with', ['papi']),
95      BoolOption('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),
96    # MKL
97      BoolOption('usemkl', 'switch on/off the usage of MKL', 'no'),
98      ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),
99      ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),
100      ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),
101    # UMFPACK
102      BoolOption('useumfpack', 'switch on/off the usage of UMFPACK', 'yes'),
103      ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),
104      ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),
105      ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),
106      ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),
107    # AMD (used by UMFPACK)
108      ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),
109      ('amd_lib_path', 'Path to AMD libs', usr_lib),
110      ('amd_libs', 'AMD libraries to link with', ['amd']),
111    # BLAS (used by UMFPACK)
112      ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),
113      ('blas_lib_path', 'Path to BLAS libs', usr_lib),
114      ('blas_libs', 'BLAS libraries to link with', ['blas'])
115  )  )
116    
117  # Initialise Scons Build Environment  ############ Specify which compilers to use ####################
 # check for user environment variables we are interested in  
 try:  
    python_path = os.environ['PYTHONPATH']  
 except KeyError:  
    python_path = ''  
 try:  
    path = os.environ['PATH']  
 except KeyError:  
    path = ''  
 try:  
    ld_library_path = os.environ['LD_LIBRARY_PATH']  
 except KeyError:  
    ld_library_path = ''  
   
 # Note: On the Altix the intel compilers are not automatically  
 # detected by scons intelc.py script. The Altix has a different directory  
 # path and in some locations the "modules" facility is used to support  
 # multiple compiler versions. This forces the need to import the users PATH  
 # environment which isn't the "scons way"  
 # This doesn't impact linux and windows which will use the default compiler (g++ or msvc, or the intel compiler if it is installed on both platforms)  
 # FIXME: Perhaps a modification to intelc.py will allow better support for ia64 on altix  
   
 if os.name != "nt" and os.uname()[4]=='ia64':  
    env = Environment(ENV = {'PATH':path}, tools = ['default', 'intelc'], options = opts)  
    env['ENV']['PATH'] = path  
    env['ENV']['LD_LIBRARY_PATH'] = ld_library_path  
    env['ENV']['PYTHONPATH'] = python_path  
    if env['CXX'] == 'icpc':  
       env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not). FIXME: this behaviour could be directly incorporated into scons intelc.py  
 elif os.name == "nt":  
    # FIXME: Need to implement equivalent of ld library path for windoze  
    env = Environment(tools = ['default', 'intelc'], options = opts)  
    env['ENV']['PYTHONPATH'] = python_path  
 else:  
    env = Environment(tools = ['default'], options = opts)  
    env['ENV']['PATH'] = path  
    env['ENV']['LD_LIBRARY_PATH'] = ld_library_path  
    env['ENV']['PYTHONPATH'] = python_path  
118    
119  # Setup help for options  # intelc uses regular expressions improperly and emits a warning about
120    # failing to find the compilers.  This warning can be safely ignored.
121    
122    if IS_WINDOWS_PLATFORM:
123          env = Environment(tools = ['default', 'msvc'], options = opts)
124    else:
125       if socket.gethostname().split('.')[0] == 'service0':
126          env = Environment(tools = ['default', 'intelc'], options = opts)
127       elif os.uname()[4]=='ia64':
128          env = Environment(tools = ['default', 'intelc'], options = opts)
129          if env['CXX'] == 'icpc':
130             env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)
131       else:
132          env = Environment(tools = ['default'], options = opts)
133  Help(opts.GenerateHelpText(env))  Help(opts.GenerateHelpText(env))
134    
135  # Add some customer builders  ############ Fill in compiler options if not set above #########
 py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  
 env.Append(BUILDERS = {'PyCompile' : py_builder});  
136    
137  if env['PLATFORM'] == "win32":  # Backwards compatibility: allow dodebug=yes and useMPI=yes
138     runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix='.exe', single_source=True)  if env['dodebug']: env['usedebug'] = 1
139    if env['useMPI']: env['usempi'] = 1
140    
141    # Default compiler options (override allowed in hostname_options.py, but should not be necessary)
142    # For both C and C++ you get: cc_flags and either the optim flags or debug flags
143    
144    if env["CC"] == "icc":
145      # Intel compilers
146      cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
147      cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"
148      cc_debug      = "-g -O0 -UDOASSERT -DDOPROF -DBOUNDS_CHECK"
149      omp_optim     = "-openmp -openmp_report0"
150      omp_debug     = "-openmp -openmp_report0"
151      omp_libs      = ['guide', 'pthread']
152      pedantic      = ""
153    elif env["CC"] == "gcc":
154      # GNU C on any system
155      cc_flags      = "-fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER"
156      cc_optim      = "-O3"
157      cc_debug      = "-g -O0 -UDOASSERT -DDOPROF -DBOUNDS_CHECK"
158      omp_optim     = ""
159      omp_debug     = ""
160      omp_libs      = []
161      pedantic      = "-pedantic-errors -Wno-long-long"
162    elif env["CC"] == "cl":
163      # Microsoft Visual C on Windows
164      cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"
165      cc_optim      = "/O2 /Op /MT /W3"
166      cc_debug      = "/Od /RTC1 /MTd /ZI -DBOUNDS_CHECK"
167      omp_optim     = ""
168      omp_debug     = ""
169      omp_libs      = []
170      pedantic      = ""
171    
172    # If not specified in hostname_options.py then set them here
173    if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags
174    if env["cc_optim"]  == "-DEFAULT_2": env['cc_optim'] = cc_optim
175    if env["cc_debug"]  == "-DEFAULT_3": env['cc_debug'] = cc_debug
176    if env["omp_optim"] == "-DEFAULT_4": env['omp_optim'] = omp_optim
177    if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug
178    if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs
179    
180    # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty
181    if not env["useopenmp"]:
182      env['omp_optim'] = ""
183      env['omp_debug'] = ""
184      env['omp_libs'] = []
185    
186    if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0
187    
188    ############ Copy environment variables into scons env #########
189    
190    try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']
191    except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1
192    
193    try: env['ENV']['PATH'] = os.environ['PATH']
194    except KeyError: pass
195    
196    try: env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
197    except KeyError: pass
198    
199    try: env['ENV']['C_INCLUDE_PATH'] = os.environ['C_INCLUDE_PATH']
200    except KeyError: pass
201    
202    try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']
203    except KeyError: pass
204    
205    try: env['ENV']['LD_LIBRARY_PATH'] = os.environ['LD_LIBRARY_PATH']
206    except KeyError: pass
207    
208    try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']
209    except KeyError: pass
210    
211    try: env['ENV']['DISPLAY'] = os.environ['DISPLAY']
212    except KeyError: pass
213    
214    try: env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']
215    except KeyError: pass
216    
217    try: env['ENV']['HOME'] = os.environ['HOME']
218    except KeyError: pass
219    
220    # Configure for test suite
221    env.PrependENVPath('PYTHONPATH', prefix)
222    env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
223    
224    ############ Set up paths for Configure() ######################
225    
226    # Make a copy of an environment
227    # Use env.Clone if available, but fall back on env.Copy for older version of scons
228    def clone_env(env):
229      if 'Clone' in dir(env): return env.Clone()    # scons-0.98
230      else:                   return env.Copy() # scons-0.96
231    
232    # Add cc option -I<Escript>/trunk/include
233    env.Append(CPPPATH      = [Dir('include')])
234    
235    # Add cc option -L<Escript>/trunk/lib
236    env.Append(LIBPATH      = [Dir('lib')])
237    
238    env.Append(CPPDEFINES = ['ESCRIPT_EXPORTS', 'FINLEY_EXPORTS'])
239    
240    if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])
241    
242    if env['usepedantic']: env.Append(CCFLAGS = pedantic)
243    
244    # MS Windows
245    if IS_WINDOWS_PLATFORM:
246      env.PrependENVPath('PATH',    [env['boost_lib_path']])
247      env.PrependENVPath('PATH',    [env['libinstall']])
248      if env['usenetcdf']:
249        env.PrependENVPath('PATH',  [env['netCDF_lib_path']])
250    
251    env.Append(ARFLAGS = env['ar_flags'])
252    
253    # Get the global Subversion revision number for getVersion() method
254    try:
255       global_revision = os.popen("svnversion -n .").read()
256       global_revision = re.sub(":.*", "", global_revision)
257       global_revision = re.sub("[^0-9]", "", global_revision)
258    except:
259       global_revision="-1"
260    if global_revision == "": global_revision="-2"
261    env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])
262    
263    ############ numarray (required) ###############################
264    
265    try:
266      from numarray import identity
267    except ImportError:
268      print "Cannot import numarray, you need to set your PYTHONPATH"
269      sys.exit(1)
270    
271    ############ C compiler (required) #############################
272    
273    # Create a Configure() environment for checking existence of required libraries and headers
274    conf = Configure(clone_env(env))
275    
276    # Test that the compiler is working
277    if not conf.CheckFunc('printf'):
278      print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])
279      sys.exit(1)
280    
281    if not conf.CheckFunc('gethostname'):
282      env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])
283    
284    ############ python libraries (required) #######################
285    
286    conf.env.AppendUnique(CPPPATH       = [env['python_path']])
287    conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])
288    conf.env.AppendUnique(LIBS      = [env['python_libs']])
289    
290    if not conf.CheckCHeader('Python.h'):
291      print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])
292      sys.exit(1)
293    if not conf.CheckFunc('Py_Main'):
294      print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])
295      sys.exit(1)
296    
297    ############ boost (required) ##################################
298    
299    conf.env.AppendUnique(CPPPATH       = [env['boost_path']])
300    conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])
301    conf.env.AppendUnique(LIBS      = [env['boost_libs']])
302    
303    if not conf.CheckCXXHeader('boost/python.hpp'):
304      print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])
305      sys.exit(1)
306    if not conf.CheckFunc('PyObject_SetAttr'):
307      print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])
308      sys.exit(1)
309    
310    # Commit changes to environment
311    env = conf.Finish()
312    
313    ############ VTK (optional) ####################################
314    
315    if env['usevtk']:
316      try:
317        import vtk
318        env['usevtk'] = 1
319      except ImportError:
320        env['usevtk'] = 0
321    
322    # Add VTK to environment env if it was found
323    if env['usevtk']:
324      env.Append(CPPDEFINES = ['USE_VTK'])
325    
326    ############ NetCDF (optional) #################################
327    
328    conf = Configure(clone_env(env))
329    
330    if env['usenetcdf']:
331      conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])
332      conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])
333      conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])
334    
335    if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0
336    if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0
337    
338    # Add NetCDF to environment env if it was found
339    if env['usenetcdf']:
340      env = conf.Finish()
341      env.Append(CPPDEFINES = ['USE_NETCDF'])
342  else:  else:
343     runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', single_source=True)    conf.Finish()
 env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  
344    
345  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  ############ PAPI (optional) ###################################
 env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  
346    
347  # Convert the options which are held in environment variable into python variables for ease of handling and configure compilation options  # Start a new configure environment that reflects what we've already found
348  try:  conf = Configure(clone_env(env))
    incinstall = env['incinstall']  
    env.Append(CPPPATH = [incinstall,])  
 except KeyError:  
    incinstall = None    
 try:  
    libinstall = env['libinstall']  
    env.Append(LIBPATH = [libinstall,])  
    env.PrependENVPath('LD_LIBRARY_PATH', libinstall)  
 except KeyError:  
    libinstall = None    
 try:  
    pyinstall = env['pyinstall']+'/esys' # all targets will install into pyinstall/esys but PYTHONPATH points at straight pyinstall so you go import esys.escript etc  
    env.PrependENVPath('PYTHONPATH', env['pyinstall'])  
 except KeyError:  
    pyinstall = None    
 try:  
    dodebug = env['dodebug']  
 except KeyError:  
    dodebug = None    
 try:  
    cc_defines = env['cc_defines']  
    env.Append(CPPDEFINES = [cc_defines,])  
 except KeyError:  
    pass  
 if dodebug:  
    try:  
       flags = env['cc_flags_debug']  
       env.Append(CCFLAGS = flags)  
    except KeyError:  
       pass  
 else:  
    try:  
       flags = env['cc_flags']  
       env.Append(CCFLAGS = flags)  
    except KeyError:  
       pass  
   
 if dodebug:  
    try:  
       flags = env['cxx_flags_debug']  
       env.Append(CXXFLAGS = flags)  
    except KeyError:  
       pass  
 else:  
    try:  
       flags = env['cxx_flags']  
       env.Append(CXXFLAGS = flags)  
    except KeyError:  
       pass  
349    
350  try:  if env['usepapi']:
351     flags = env['ar_flags']    conf.env.AppendUnique(CPPPATH = [env['papi_path']])
352     env.Append(ARFLAGS = flags)    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])
353  except KeyError:    conf.env.AppendUnique(LIBS    = [env['papi_libs']])
    ar_flags = None    
 try:  
    sys_libs = env['sys_libs']  
 except KeyError:  
    sys_libs = ''  
354    
355  try:  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0
356     tar_flags = env['tar_flags']  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0
    env.Replace(TARFLAGS = tar_flags)  
 except KeyError:  
    pass  
357    
358  try:  # Add PAPI to environment env if it was found
359     includes = env['mkl_path']  if env['usepapi']:
360     env.Append(CPPPATH = [includes,])    env = conf.Finish()
361  except KeyError:    env.Append(CPPDEFINES = ['BLOCKPAPI'])
362     pass  else:
363      conf.Finish()
364    
365  try:  ############ MKL (optional) ####################################
    lib_path = env['mkl_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
366    
367  try:  # Start a new configure environment that reflects what we've already found
368     mkl_libs = env['mkl_libs']  conf = Configure(clone_env(env))
 except KeyError:  
    mkl_libs = ''  
 try:  
    includes = env['scsl_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['scsl_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    scsl_libs = env['scsl_libs']  
 except KeyError:  
    scsl_libs = ''  
 try:  
    includes = env['umf_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['umf_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    umf_libs = env['umf_libs']  
 except KeyError:  
    umf_libs = ''  
 try:  
    includes = env['boost_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['boost_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    boost_lib = env['boost_lib']  
 except KeyError:  
    boost_lib = None    
 try:  
    includes = env['python_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['python_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    python_lib = env['python_lib']  
 except KeyError:  
    python_lib = None    
 try:  
    doxygen_path = env['doxygen_path']  
 except KeyError:  
    doxygen_path = None    
 try:  
    epydoc_path = env['epydoc_path']  
 except KeyError:  
    epydoc_path = None    
 try:  
    epydoc_pythonpath = env['epydoc_pythonpath']  
 except KeyError:  
    epydoc_pythonpath = None    
 try:  
    includes = env['papi_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['papi_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    papi_libs = env['papi_libs']  
 except KeyError:  
    papi_libs = None    
369    
370  try:  if env['usemkl']:
371     src_zipfile = env['src_zipfile']    conf.env.AppendUnique(CPPPATH = [env['mkl_path']])
372  except KeyError:    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])
373     src_zipfile = None      conf.env.AppendUnique(LIBS    = [env['mkl_libs']])
374    
375    if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0
376    if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0
377    
378  try:  # Add MKL to environment env if it was found
379     test_zipfile = env['test_zipfile']  if env['usemkl']:
380  except KeyError:    env = conf.Finish()
381     test_zipfile = None      env.Append(CPPDEFINES = ['MKL'])
382    else:
383      conf.Finish()
384    
385  try:  ############ UMFPACK (optional) ################################
    src_tarfile = env['src_tarfile']  
 except KeyError:  
    src_tarfile = None    
386    
387    # Start a new configure environment that reflects what we've already found
388    conf = Configure(clone_env(env))
389    
390  try:  if env['useumfpack']:
391     test_tarfile = env['test_tarfile']    conf.env.AppendUnique(CPPPATH = [env['ufc_path']])
392  except KeyError:    conf.env.AppendUnique(CPPPATH = [env['umf_path']])
393     test_tarfile = None      conf.env.AppendUnique(LIBPATH = [env['umf_lib_path']])
394      conf.env.AppendUnique(LIBS    = [env['umf_libs']])
395      conf.env.AppendUnique(CPPPATH = [env['amd_path']])
396      conf.env.AppendUnique(LIBPATH = [env['amd_lib_path']])
397      conf.env.AppendUnique(LIBS    = [env['amd_libs']])
398      conf.env.AppendUnique(CPPPATH = [env['blas_path']])
399      conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])
400      conf.env.AppendUnique(LIBS    = [env['blas_libs']])
401    
402    if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0
403    if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0
404    
405    # Add UMFPACK to environment env if it was found
406    if env['useumfpack']:
407      env = conf.Finish()
408      env.Append(CPPDEFINES = ['UMFPACK'])
409    else:
410      conf.Finish()
411    
412    ############ Add the compiler flags ############################
413    
414    # Enable debug by choosing either cc_debug or cc_optim
415    if env['usedebug']:
416      env.Append(CCFLAGS        = env['cc_debug'])
417      env.Append(CCFLAGS        = env['omp_debug'])
418    else:
419      env.Append(CCFLAGS        = env['cc_optim'])
420      env.Append(CCFLAGS        = env['omp_optim'])
421    
422    # Always use cc_flags
423    env.Append(CCFLAGS      = env['cc_flags'])
424    env.Append(LIBS         = [env['omp_libs']])
425    
426    ############ MPI (optional) ####################################
427    
428    # Create a modified environment for MPI programs (identical to env if usempi=no)
429    env_mpi = clone_env(env)
430    
431    # Start a new configure environment that reflects what we've already found
432    conf = Configure(clone_env(env_mpi))
433    
434    if env_mpi['usempi']:
435      conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])
436      conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])
437      conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])
438    
439    if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0
440    if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0
441    
442    # Add MPI to environment env_mpi if it was found
443    if env_mpi['usempi']:
444      env_mpi = conf.Finish()
445      env_mpi.Append(CPPDEFINES = ['PASO_MPI', 'MPI_NO_CPPBIND', env_mpi['MPICH_IGNORE_CXX_SEEK']])
446    else:
447      conf.Finish()
448    
449    env['usempi'] = env_mpi['usempi']
450    
451    ############ ParMETIS (optional) ###############################
452    
453    # Start a new configure environment that reflects what we've already found
454    conf = Configure(clone_env(env_mpi))
455    
456    if not env_mpi['usempi']: env_mpi['useparmetis'] = 0
457    
458    if env_mpi['useparmetis']:
459      conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])
460      conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])
461      conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])
462    
463    if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0
464    if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0
465    
466    # Add ParMETIS to environment env_mpi if it was found
467    if env_mpi['useparmetis']:
468      env_mpi = conf.Finish()
469      env_mpi.Append(CPPDEFINES = ['USE_PARMETIS'])
470    else:
471      conf.Finish()
472    
473    env['useparmetis'] = env_mpi['useparmetis']
474    
475    ############ Summarize our environment #########################
476    
477    print ""
478    print "Summary of configuration (see ./config.log for information)"
479    print " Using python libraries"
480    print " Using numarray"
481    print " Using boost"
482    if env['usenetcdf']: print "    Using NetCDF"
483    else: print "   Not using NetCDF"
484    if env['usevtk']: print "   Using VTK"
485    else: print "   Not using VTK"
486    if env['usemkl']: print "   Using MKL"
487    else: print "   Not using MKL"
488    if env['useumfpack']: print "   Using UMFPACK"
489    else: print "   Not using UMFPACK"
490    if env['useopenmp']: print "    Using OpenMP"
491    else: print "   Not using OpenMP"
492    if env['usempi']: print "   Using MPI"
493    else: print "   Not using MPI"
494    if env['useparmetis']: print "  Using ParMETIS"
495    else: print "   Not using ParMETIS (requires MPI)"
496    if env['usepapi']: print "  Using PAPI"
497    else: print "   Not using PAPI"
498    if env['usedebug']: print " Compiling for debug"
499    else: print "   Not compiling for debug"
500    print " Installing in", prefix
501    print ""
502    
503    ############ Add some custom builders ##########################
504    
505    py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
506    env.Append(BUILDERS = {'PyCompile' : py_builder});
507    
508    runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
509    env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
510    
511    runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
512    env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
513    
514    ############ Build the desired subdirectories ##################
515    
516    Export(["env", "env_mpi", "clone_env"])
517    
 try:  
    doc = env['doc']  
 except KeyError:  
    doc = None    
   
 # Zipgets  
 env.Default(libinstall)  
 env.Default(incinstall)  
 env.Default(pyinstall)  
 env.Alias('release_src',[ src_zipfile, src_tarfile ])    
 env.Alias('release_tests',[ test_zipfile, test_tarfile])  
 env.Alias('release', ['release_src', 'release_tests'])  
 env.Alias('docs')  
 env.Alias('build_tests')    # target to build all C++ tests  
 env.Alias('build_py_tests') # target to build all python tests  
 env.Alias('build_all_tests', [ 'build_tests', 'build_py_tests' ] ) # target to build all python tests  
 env.Alias('run_tests', 'build_tests')   # target to run all C++ test  
 env.Alias('py_tests', 'build_py_tests') # taget to run all released python tests  
 env.Alias('all_tests', ['run_tests', 'py_tests']) # target to run all C++ and released python tests  
   
 # Python install - esys __init__.py  
 # This is just an empty file but stills need to be touched so add a special target and Command. Note you can't use the scons Touch() function as it will not  
 # create the file if it doesn't exist  
 env.Command(pyinstall+'/__init__.py', None, 'touch $TARGET')  
   
 # Allow sconscripts to see the env  
 Export(["env", "incinstall", "libinstall", "pyinstall", "dodebug", "mkl_libs", "scsl_libs", "umf_libs",  
     "boost_lib", "python_lib", "doxygen_path", "epydoc_path", "epydoc_pythonpath", "papi_libs",  
         "sys_libs", "test_zipfile", "src_zipfile", "test_tarfile", "src_tarfile", "doc" ])  
   
 # End initialisation section  
 # Begin configuration section  
 # adds this file and the scons option directore to the source tar  
 release_srcfiles=[env.File('SConstruct'),]+[ env.File(x) for x in glob.glob('scons/*.py') ]  
 release_testfiles=[env.File('README_TESTS'),]  
 env.Zip(src_zipfile, release_srcfiles)  
 env.Zip(test_zipfile, release_testfiles)  
 env.Tar(src_tarfile, release_srcfiles)  
 env.Tar(test_tarfile, release_testfiles)  
   
 # Insert new components to be build here  
 # FIXME: might be nice to replace this verbosity with a list of targets and some  
 # FIXME: nifty python to create the lengthy but very similar env.Sconscript lines  
 # Third Party libraries  
518  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
 # C/C++ Libraries  
519  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)
 env.SConscript(dirs = ['bruce/src'], build_dir='build/$PLATFORM/bruce', duplicate=0)  
520  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)
521  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)
522  env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)
523  env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)  env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)
524  #env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  env.SConscript(dirs = ['doc'], build_dir='build/$PLATFORM/doc', duplicate=0)
525    env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)
526    env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)
527    env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)
528    
529    ############ Remember what optimizations we used ###############
530    
531    remember_list = []
532    
533    if env['usedebug']:
534      remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))
535    else:
536      remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Delete('$TARGET'))
537    
538    if env['usempi']:
539      remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))
540    else:
541      remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Delete('$TARGET'))
542    
543    if env['omp_optim'] != '':
544      remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))
545    else:
546      remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Delete('$TARGET'))
547    
548    env.Alias('remember_options', remember_list)
549    
550    ############ Targets to build and install libraries ############
551    
552    target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))
553    env.Alias('target_init', [target_init])
554    
555    # The headers have to be installed prior to build in order to satisfy #include <paso/Common.h>
556    env.Alias('build_esysUtils', ['target_install_esysUtils_headers', 'target_esysUtils_a'])
557    env.Alias('install_esysUtils', ['build_esysUtils', 'target_install_esysUtils_a'])
558    
559    env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])
560    env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])
561    
562    env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])
563    env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])
564    
565    env.Alias('build_finley', ['target_install_finley_headers', 'target_finley_so', 'target_finleycpp_so'])
566    env.Alias('install_finley', ['build_finley', 'target_install_finley_so', 'target_install_finleycpp_so', 'target_install_finley_py'])
567    
568    # Now gather all the above into a couple easy targets: build_all and install_all
569    build_all_list = []
570    build_all_list += ['build_esysUtils']
571    build_all_list += ['build_paso']
572    build_all_list += ['build_escript']
573    build_all_list += ['build_finley']
574    if env['usempi']: build_all_list += ['target_pythonMPI_exe']
575    env.Alias('build_all', build_all_list)
576    
577    install_all_list = []
578    install_all_list += ['target_init']
579    install_all_list += ['install_esysUtils']
580    install_all_list += ['install_paso']
581    install_all_list += ['install_escript']
582    install_all_list += ['install_finley']
583    install_all_list += ['target_install_pyvisi_py']
584    install_all_list += ['target_install_modellib_py']
585    install_all_list += ['target_install_pycad_py']
586    if env['usempi']: install_all_list += ['target_install_pythonMPI_exe']
587    install_all_list += ['remember_options']
588    env.Alias('install_all', install_all_list)
589    
590    # Default target is install
591    env.Default('install_all')
592    
593    ############ Targets to build and run the test suite ###########
594    
595    env.Alias('build_cppunittest', ['target_install_cppunittest_headers', 'target_cppunittest_a'])
596    env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])
597    env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])
598    env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])
599    
600    ############ Targets to build the documentation ################
601    
602    env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])
603    
 # FIXME:need to be incorporated into build system  
 # FIXME: 'doc/SConstruct']  
 # FIXME: 'doc/SConstruct']  

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