/[escript]/trunk/SConstruct
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revision 2012 by phornby, Mon Nov 10 12:13:45 2008 UTC revision 2388 by jfenwick, Wed Apr 15 06:21:25 2009 UTC
# Line 15  Line 15 
15  EnsureSConsVersion(0,96,91)  EnsureSConsVersion(0,96,91)
16  EnsurePythonVersion(2,3)  EnsurePythonVersion(2,3)
17    
18  import sys, os, re, socket  import sys, os, re, socket, platform, stat
19    
20  # Add our extensions  # Add our extensions
21  if os.path.isdir('scons'): sys.path.append('scons')  if os.path.isdir('scons'): sys.path.append('scons')
# Line 35  prefix = ARGUMENTS.get('prefix', Dir('#. Line 35  prefix = ARGUMENTS.get('prefix', Dir('#.
35    
36  # Read configuration options from file scons/<hostname>_options.py  # Read configuration options from file scons/<hostname>_options.py
37  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])
38  tmp = os.path.join("scons",hostname+"_options.py")  ehostname = scons_extensions.effectiveName(hostname)
39    tmp = os.path.join("scons",ehostname+"_options.py")
40  options_file = ARGUMENTS.get('options_file', tmp)  options_file = ARGUMENTS.get('options_file', tmp)
41  if not os.path.isfile(options_file):  if not os.path.isfile(options_file):
42    options_file = False    options_file = False
# Line 72  opts.AddOptions( Line 73  opts.AddOptions(
73    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
74    ('sys_libs', 'System libraries to link with', []),    ('sys_libs', 'System libraries to link with', []),
75    ('ar_flags', 'Static library archiver flags to use', ''),    ('ar_flags', 'Static library archiver flags to use', ''),
76    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'yes'),    BoolOption('useopenmp', 'Compile parallel version using OpenMP', 'no'),
77    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'yes'),    BoolOption('usepedantic', 'Compile with -pedantic if using gcc', 'no'),
78      BoolOption('usewarnings','Compile with warnings as errors if using gcc','yes'),
79      ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),
80  # Python  # Python
81    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),
82    ('python_lib_path', 'Path to Python libs', usr_lib),    ('python_lib_path', 'Path to Python libs', usr_lib),
# Line 96  opts.AddOptions( Line 99  opts.AddOptions(
99    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),
100    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),
101    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),
102      ('mpi_flavour','Type of MPI execution environment','none'),
103  # ParMETIS  # ParMETIS
104    BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),    BoolOption('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),
105    ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),    ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),
# Line 118  opts.AddOptions( Line 122  opts.AddOptions(
122    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),    ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),
123    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),    ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),
124    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),
125    # Silo
126      BoolOption('usesilo', 'switch on/off the usage of Silo', 'yes'),
127      ('silo_path', 'Path to Silo includes', '/usr/include'),
128      ('silo_lib_path', 'Path to Silo libs', usr_lib),
129      ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
130  # AMD (used by UMFPACK)  # AMD (used by UMFPACK)
131    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),    ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),
132    ('amd_lib_path', 'Path to AMD libs', usr_lib),    ('amd_lib_path', 'Path to AMD libs', usr_lib),
# Line 127  opts.AddOptions( Line 136  opts.AddOptions(
136    ('blas_lib_path', 'Path to BLAS libs', usr_lib),    ('blas_lib_path', 'Path to BLAS libs', usr_lib),
137    ('blas_libs', 'BLAS libraries to link with', ['blas']),    ('blas_libs', 'BLAS libraries to link with', ['blas']),
138  # An option for specifying the compiler tools set (see windows branch).  # An option for specifying the compiler tools set (see windows branch).
139    ('tools_names', 'allow control over the tools in the env setup', ['intelc'])    ('tools_names', 'allow control over the tools in the env setup', ['intelc']),
140    # finer control over library building, intel aggressive global optimisation
141    # works with dynamic libraries on windows.
142      ('share_esysUtils', 'control static or dynamic esysUtils lib', False),
143      ('share_paso', 'control static or dynamic paso lib', False)
144  )  )
145    
146  ############ Specify which compilers to use ####################  ############ Specify which compilers to use ####################
# Line 159  if env['useMPI']: env['usempi'] = 1 Line 172  if env['useMPI']: env['usempi'] = 1
172  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)
173  # For both C and C++ you get: cc_flags and either the optim flags or debug flags  # For both C and C++ you get: cc_flags and either the optim flags or debug flags
174    
175    sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.
176    
177  if env["CC"] == "icc":  if env["CC"] == "icc":
178    # Intel compilers    # Intel compilers
179    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"    cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
# Line 168  if env["CC"] == "icc": Line 183  if env["CC"] == "icc":
183    omp_debug     = "-openmp -openmp_report0"    omp_debug     = "-openmp -openmp_report0"
184    omp_libs      = ['guide', 'pthread']    omp_libs      = ['guide', 'pthread']
185    pedantic      = ""    pedantic      = ""
186      fatalwarning      = ""        # Switch to turn warnings into errors
187      sysheaderopt      = ""
188  elif env["CC"] == "gcc":  elif env["CC"] == "gcc":
189    # GNU C on any system    # GNU C on any system
190    cc_flags      = "-fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER"    cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"
191    #the long long warning occurs on the Mac
192    cc_optim      = "-O3"    cc_optim      = "-O3"
193    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"    cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
194    omp_optim     = ""    omp_optim     = "-fopenmp"
195    omp_debug     = ""    omp_debug     = "-fopenmp"
196    omp_libs      = []    omp_libs      = ['gomp']
197    pedantic      = "-pedantic-errors -Wno-long-long"    pedantic      = "-pedantic-errors -Wno-long-long"
198      fatalwarning      = "-Werror"
199      sysheaderopt      = "-isystem "
200  elif env["CC"] == "cl":  elif env["CC"] == "cl":
201    # Microsoft Visual C on Windows    # Microsoft Visual C on Windows
202    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"    cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"
# Line 186  elif env["CC"] == "cl": Line 206  elif env["CC"] == "cl":
206    omp_debug     = ""    omp_debug     = ""
207    omp_libs      = []    omp_libs      = []
208    pedantic      = ""    pedantic      = ""
209      fatalwarning      = ""
210      sysheaderopt      = ""
211  elif env["CC"] == "icl":  elif env["CC"] == "icl":
212    # intel C on Windows, see windows_msvc71_options.py for a start    # intel C on Windows, see windows_intelc_options.py for a start
213    pedantic      = ""    pedantic      = ""
214      fatalwarning      = ""
215      sysheaderopt      = ""
216    
217    
218  # If not specified in hostname_options.py then set them here  # If not specified in hostname_options.py then set them here
219  if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags  if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags
# Line 198  if env["omp_optim"]    == "-DEFAULT_4": env Line 223  if env["omp_optim"]    == "-DEFAULT_4": env
223  if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug  if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug
224  if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs  if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs
225    
226    #set up the autolazy values
227    if env['forcelazy']    != "leave_alone":
228      if env['forcelazy'] == 'on':
229        env.Append(CPPDEFINES='FAUTOLAZYON')
230      else:
231         if env['forcelazy'] == 'off':
232        env.Append(CPPDEFINES='FAUTOLAZYOFF')
233    
234  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty  # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty
235  if not env["useopenmp"]:  if not env["useopenmp"]:
236    env['omp_optim'] = ""    env['omp_optim'] = ""
# Line 211  if env['omp_optim'] == "" and env['omp_d Line 244  if env['omp_optim'] == "" and env['omp_d
244  try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']  try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']
245  except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1  except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1
246    
247    try: env['ENV']['ESCRIPT_NUM_THREADS'] = os.environ['ESCRIPT_NUM_THREADS']
248    except KeyError: pass
249    
250    try: env['ENV']['ESCRIPT_NUM_PROCS'] = os.environ['ESCRIPT_NUM_PROCS']
251    except KeyError: pass
252    
253    try: env['ENV']['ESCRIPT_NUM_NODES'] = os.environ['ESCRIPT_NUM_NODES']
254    except KeyError: pass
255    
256    try: env['ENV']['ESCRIPT_HOSTFILE'] = os.environ['ESCRIPT_HOSTFILE']
257    except KeyError: pass
258    
259  try: env['ENV']['PATH'] = os.environ['PATH']  try: env['ENV']['PATH'] = os.environ['PATH']
260  except KeyError: pass  except KeyError: pass
261    
# Line 258  env.Append(CPPPATH     = [Dir('include')]) Line 303  env.Append(CPPPATH     = [Dir('include')])
303  # Add cc option -L<Escript>/trunk/lib  # Add cc option -L<Escript>/trunk/lib
304  env.Append(LIBPATH      = [Dir(env['libinstall'])])  env.Append(LIBPATH      = [Dir(env['libinstall'])])
305    
 env.Append(CPPDEFINES = ['ESCRIPT_EXPORTS', 'FINLEY_EXPORTS'])  
   
306  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])
307  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])
308    
# Line 267  if env['usepedantic']: env.Append(CCFLAG Line 310  if env['usepedantic']: env.Append(CCFLAG
310    
311  # MS Windows  # MS Windows
312  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
313    env.PrependENVPath('PATH',    [env['boost_lib_path']])    env.AppendENVPath('PATH', [env['boost_lib_path']])
314    env.PrependENVPath('PATH',    [env['libinstall']])    env.AppendENVPath('PATH', [env['libinstall']])
315      if not env['share_esysUtils'] :
316        env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
317      if not env['share_paso'] :
318        env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
319    
320    if env['usenetcdf']:    if env['usenetcdf']:
321      env.PrependENVPath('PATH',  [env['netCDF_lib_path']])      env.AppendENVPath('PATH',   [env['netCDF_lib_path']])
322    
323  env.Append(ARFLAGS = env['ar_flags'])  env.Append(ARFLAGS = env['ar_flags'])
324    
# Line 299  conf = Configure(clone_env(env)) Line 347  conf = Configure(clone_env(env))
347    
348  # Test that the compiler is working  # Test that the compiler is working
349  if not conf.CheckFunc('printf'):  if not conf.CheckFunc('printf'):
350    print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])     print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])
351    sys.exit(1)     sys.exit(1)
352    
353  if conf.CheckFunc('gethostname'):  if conf.CheckFunc('gethostname'):
354    conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])    conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])
355    
356  ############ python libraries (required) #######################  ############ python libraries (required) #######################
357    
358  conf.env.AppendUnique(CPPPATH       = [env['python_path']])  
359    if not sysheaderopt =="":
360      conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])
361    else:
362      conf.env.AppendUnique(CPPPATH     = [env['python_path']])
363    
364  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])
365  conf.env.AppendUnique(LIBS      = [env['python_libs']])  conf.env.AppendUnique(LIBS      = [env['python_libs']])
366    
367  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['python_lib_path'])  # The wrapper script needs to find these libs
368    conf.env.PrependENVPath('PYTHONPATH', prefix)
369    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
370    
371  if not conf.CheckCHeader('Python.h'):  if not conf.CheckCHeader('Python.h'):
372    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])    print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])
373    sys.exit(1)    sys.exit(1)
374  if not conf.CheckFunc('Py_Main'):  if not conf.CheckFunc('Py_Exit'):
375    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])    print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])
376    sys.exit(1)    sys.exit(1)
377    
378  ############ boost (required) ##################################  ############ boost (required) ##################################
379    
380  conf.env.AppendUnique(CPPPATH       = [env['boost_path']])  if not sysheaderopt =="":
381    # This is required because we can't -isystem /usr/system because it breaks std includes
382      if os.path.normpath(env['boost_path']) =="/usr/include":
383        conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))
384      else:
385        conf.env.Append(CCFLAGS=sysheaderopt+env['boost_path'])
386    else:
387      conf.env.AppendUnique(CPPPATH     = [env['boost_path']])
388    
389  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])  conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])
390  conf.env.AppendUnique(LIBS      = [env['boost_libs']])  conf.env.AppendUnique(LIBS      = [env['boost_libs']])
391    
392  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs  conf.env.PrependENVPath('LD_LIBRARY_PATH', env['boost_lib_path'])   # The wrapper script needs to find these libs
393    #ensure that our path entries remain at the front
394    conf.env.PrependENVPath('PYTHONPATH', prefix)
395    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
396    
397  if not conf.CheckCXXHeader('boost/python.hpp'):  if not conf.CheckCXXHeader('boost/python.hpp'):
398    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])    print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])
399    sys.exit(1)    sys.exit(1)
400    
401  if not conf.CheckFunc('PyObject_SetAttr'):  if not conf.CheckFunc('PyObject_SetAttr'):
402    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])    print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])
403    sys.exit(1)    sys.exit(1)
# Line 360  if env['usenetcdf']: Line 427  if env['usenetcdf']:
427    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])
428    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])    conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])
429    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['netCDF_lib_path'])    # The wrapper script needs to find these libs
430      #ensure that our path entries remain at the front
431      conf.env.PrependENVPath('PYTHONPATH', prefix)
432      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
433    
434  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0
435  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0  if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0
# Line 381  if env['usepapi']: Line 451  if env['usepapi']:
451    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])
452    conf.env.AppendUnique(LIBS    = [env['papi_libs']])    conf.env.AppendUnique(LIBS    = [env['papi_libs']])
453    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['papi_lib_path'])  # The wrapper script needs to find these libs
454      #ensure that our path entries remain at the front
455      conf.env.PrependENVPath('PYTHONPATH', prefix)
456      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
457    
458  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0
459  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0  if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0
# Line 402  if env['usemkl']: Line 475  if env['usemkl']:
475    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])    conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])
476    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])    conf.env.AppendUnique(LIBS    = [env['mkl_libs']])
477    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mkl_lib_path'])   # The wrapper script needs to find these libs
478      #ensure that our path entries remain at the front
479      conf.env.PrependENVPath('PYTHONPATH', prefix)
480      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
481    
482  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0
483  if env['usemkl'] and not conf.CheckFunc('pardiso_'): env['usemkl'] = 0  if env['usemkl'] and not conf.CheckFunc('pardiso'): env['usemkl'] = 0
484    
485  # Add MKL to environment env if it was found  # Add MKL to environment env if it was found
486  if env['usemkl']:  if env['usemkl']:
# Line 432  if env['useumfpack']: Line 508  if env['useumfpack']:
508    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['umf_lib_path'])   # The wrapper script needs to find these libs
509    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['amd_lib_path'])   # The wrapper script needs to find these libs
510    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['blas_lib_path'])  # The wrapper script needs to find these libs
511      #ensure that our path entries remain at the front
512      conf.env.PrependENVPath('PYTHONPATH', prefix)
513      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
514    
 if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0  
515  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0  if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0
516    if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0
517    # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?
518    
519  # Add UMFPACK to environment env if it was found  # Add UMFPACK to environment env if it was found
520  if env['useumfpack']:  if env['useumfpack']:
# Line 443  if env['useumfpack']: Line 523  if env['useumfpack']:
523  else:  else:
524    conf.Finish()    conf.Finish()
525    
526    ############ Silo (optional) ###################################
527    
528    if env['usesilo']:
529      conf = Configure(clone_env(env))
530      conf.env.AppendUnique(CPPPATH = [env['silo_path']])
531      conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])
532      conf.env.AppendUnique(LIBS = [env['silo_libs']])
533      if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0
534      if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0
535      conf.Finish()
536    
537    # Add the path to Silo to environment env if it was found.
538    # Note that we do not add the libs since they are only needed for the
539    # escriptreader library and tools.
540    if env['usesilo']:
541      env.AppendUnique(CPPPATH = [env['silo_path']])
542      env.AppendUnique(LIBPATH = [env['silo_lib_path']])
543      env.Append(CPPDEFINES = ['HAVE_SILO'])
544    
545  ############ Add the compiler flags ############################  ############ Add the compiler flags ############################
546    
547  # Enable debug by choosing either cc_debug or cc_optim  # Enable debug by choosing either cc_debug or cc_optim
# Line 457  else: Line 556  else:
556  env.Append(CCFLAGS      = env['cc_flags'])  env.Append(CCFLAGS      = env['cc_flags'])
557  env.Append(LIBS         = [env['omp_libs']])  env.Append(LIBS         = [env['omp_libs']])
558    
559    ############ Add some custom builders ##########################
560    
561    py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
562    env.Append(BUILDERS = {'PyCompile' : py_builder});
563    
564    runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
565    env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
566    
567    runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
568    env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
569    
570    epstopdfbuilder = Builder(action = scons_extensions.eps2pdf, suffix=".pdf", src_suffix=".eps", single_source=True)
571    env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
572    
573  ############ MPI (optional) ####################################  ############ MPI (optional) ####################################
574    if not env['usempi']: env['mpi_flavour']='none'
575    
576  # Create a modified environment for MPI programs (identical to env if usempi=no)  # Create a modified environment for MPI programs (identical to env if usempi=no)
577  env_mpi = clone_env(env)  env_mpi = clone_env(env)
# Line 466  env_mpi = clone_env(env) Line 580  env_mpi = clone_env(env)
580  conf = Configure(clone_env(env_mpi))  conf = Configure(clone_env(env_mpi))
581    
582  if env_mpi['usempi']:  if env_mpi['usempi']:
583      VALID_MPIs=[ "MPT", "MPICH", "MPICH2", "OPENMPI", "INTELMPI" ]
584      if not env_mpi['mpi_flavour'] in VALID_MPIs:
585          raise ValueError,"MPI is enabled but mpi_flavour = %s is not a valid key from %s."%( env_mpi['mpi_flavour'],VALID_MPIs)
586    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])    conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])
587    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])
588    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])
589    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['mpi_lib_path'])   # The wrapper script needs to find these libs
590      #ensure that our path entries remain at the front
591      conf.env.PrependENVPath('PYTHONPATH', prefix)
592      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
593    
594  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0  if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0
595  if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0  # if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0
596    
597  # Add MPI to environment env_mpi if it was found  # Add MPI to environment env_mpi if it was found
598  if env_mpi['usempi']:  if env_mpi['usempi']:
# Line 483  else: Line 603  else:
603    
604  env['usempi'] = env_mpi['usempi']  env['usempi'] = env_mpi['usempi']
605    
606    
607  ############ ParMETIS (optional) ###############################  ############ ParMETIS (optional) ###############################
608    
609  # Start a new configure environment that reflects what we've already found  # Start a new configure environment that reflects what we've already found
# Line 495  if env_mpi['useparmetis']: Line 616  if env_mpi['useparmetis']:
616    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])    conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])
617    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])    conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])
618    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs    conf.env.PrependENVPath('LD_LIBRARY_PATH', env['parmetis_lib_path'])  # The wrapper script needs to find these libs
619      #ensure that our path entries remain at the front
620      conf.env.PrependENVPath('PYTHONPATH', prefix)
621      conf.env.PrependENVPath('LD_LIBRARY_PATH', env['libinstall'])
622    
623  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0
624  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0  if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0
# Line 508  else: Line 632  else:
632    
633  env['useparmetis'] = env_mpi['useparmetis']  env['useparmetis'] = env_mpi['useparmetis']
634    
635    ############ Now we switch on Warnings as errors ###############
636    
637    #this needs to be done after configuration because the scons test files have warnings in them
638    
639    if ((fatalwarning != "") and (env['usewarnings'])):
640      env.Append(CCFLAGS        = fatalwarning)
641      env_mpi.Append(CCFLAGS        = fatalwarning)
642    
643  ############ Summarize our environment #########################  ############ Summarize our environment #########################
644    
645  print ""  print ""
# Line 523  if env['usemkl']: print "  Using MKL" Line 655  if env['usemkl']: print "  Using MKL"
655  else: print "   Not using MKL"  else: print "   Not using MKL"
656  if env['useumfpack']: print "   Using UMFPACK"  if env['useumfpack']: print "   Using UMFPACK"
657  else: print "   Not using UMFPACK"  else: print "   Not using UMFPACK"
658    if env['usesilo']: print "  Using Silo"
659    else: print "   Not using Silo"
660  if env['useopenmp']: print "    Using OpenMP"  if env['useopenmp']: print "    Using OpenMP"
661  else: print "   Not using OpenMP"  else: print "   Not using OpenMP"
662  if env['usempi']: print "   Using MPI"  if env['usempi']: print "   Using MPI (flavour = %s)"%env['mpi_flavour']
663  else: print "   Not using MPI"  else: print "   Not using MPI"
664  if env['useparmetis']: print "  Using ParMETIS"  if env['useparmetis']: print "  Using ParMETIS"
665  else: print "   Not using ParMETIS (requires MPI)"  else: print "   Not using ParMETIS (requires MPI)"
# Line 534  else: print "  Not using PAPI" Line 668  else: print "  Not using PAPI"
668  if env['usedebug']: print " Compiling for debug"  if env['usedebug']: print " Compiling for debug"
669  else: print "   Not compiling for debug"  else: print "   Not compiling for debug"
670  print " Installing in", prefix  print " Installing in", prefix
671    if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"
672    else: print "   Not treating warnings as errors"
673  print ""  print ""
674    
675  ############ Delete option-dependent files #####################  ############ Delete option-dependent files #####################
676    
677  Execute(Delete(env['libinstall'] + "/Compiled.with.debug"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.debug")))
678  Execute(Delete(env['libinstall'] + "/Compiled.with.mpi"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.mpi")))
679  Execute(Delete(env['libinstall'] + "/Compiled.with.openmp"))  Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.openmp")))
680  if not env['usempi']: Execute(Delete(env['libinstall'] + "/pythonMPI"))  Execute(Delete(os.path.join(env['libinstall'],"pyversion")))
681    Execute(Delete(os.path.join(env['libinstall'],"buildvars")))
682    if not env['usempi']: Execute(Delete(os.path.join(env['libinstall'],"pythonMPI")))
683    
 ############ Add some custom builders ##########################  
684    
685  py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  ############ Build the subdirectories ##########################
 env.Append(BUILDERS = {'PyCompile' : py_builder});  
686    
687  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  from grouptest import *
 env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  
688    
689  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  TestGroups=[]
 env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  
690    
691  ############ Build the subdirectories ##########################  Export(
692      ["env",
693  Export(["env", "env_mpi", "clone_env"])     "env_mpi",
694       "clone_env",
695       "IS_WINDOWS_PLATFORM",
696       "TestGroups"
697       ]
698      )
699    
700  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
701    env.SConscript(dirs = ['tools/libescriptreader/src'], build_dir='build/$PLATFORM/tools/libescriptreader', duplicate=0)
702  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)
703  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)
704  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)
# Line 569  env.SConscript(dirs = ['pyvisi/py_src'], Line 709  env.SConscript(dirs = ['pyvisi/py_src'],
709  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)
710  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)
711  env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)  env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)
712    env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)
713    
714    
715  ############ Remember what optimizations we used ###############  ############ Remember what optimizations we used ###############
716    
717  remember_list = []  remember_list = []
718    
719  if env['usedebug']:  if env['usedebug']:
720    remember_list += env.Command(env['libinstall'] + "/Compiled.with.debug", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.debug"), None, Touch('$TARGET'))
721    
722  if env['usempi']:  if env['usempi']:
723    remember_list += env.Command(env['libinstall'] + "/Compiled.with.mpi", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.mpi"), None, Touch('$TARGET'))
724    
725  if env['omp_optim'] != '':  if env['useopenmp']:
726    remember_list += env.Command(env['libinstall'] + "/Compiled.with.openmp", None, Touch('$TARGET'))    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.openmp"), None, Touch('$TARGET'))
727    
728  env.Alias('remember_options', remember_list)  env.Alias('remember_options', remember_list)
729    
730    
731    ############### Record python interpreter version ##############
732    
733    if not IS_WINDOWS_PLATFORM:
734      versionstring="Python "+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])
735      os.system("echo "+versionstring+" > "+os.path.join(env['libinstall'],"pyversion"))
736    
737    ############## Populate the buildvars file #####################
738    
739    buildvars=open(os.path.join(env['libinstall'],'buildvars'),'w')
740    buildvars.write('python='+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+'\n')
741    
742    # Find the boost version by extracting it from version.hpp
743    boosthpp=open(os.path.join(env['boost_path'],'boost','version.hpp'))
744    boostversion='unknown'
745    try:
746        for line in boosthpp:
747            ver=re.match(r'#define BOOST_VERSION (\d+)',line)
748            if ver:
749                boostversion=ver.group(1)
750    except StopIteration:
751        pass
752    buildvars.write("boost="+boostversion+"\n")
753    buildvars.write("svn_revision="+str(global_revision)+"\n")
754    out="usedebug="
755    if env['usedebug']:
756        out+="y"
757    else:
758        out+="n"
759    out+="\nusempi="
760    if env['usempi']:
761        out+="y"
762    else:
763        out+="n"
764    out+="\nuseopenmp="
765    if env['useopenmp']:
766        out+="y"
767    else:
768        out+="n"
769    buildvars.write(out+"\n")
770    buildvars.write("mpi_flavour="+env['mpi_flavour']+'\n')
771    
772    buildvars.close()
773    
774    
775  ############ Targets to build and install libraries ############  ############ Targets to build and install libraries ############
776    
777  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))
# Line 610  build_all_list += ['build_paso'] Line 797  build_all_list += ['build_paso']
797  build_all_list += ['build_escript']  build_all_list += ['build_escript']
798  build_all_list += ['build_finley']  build_all_list += ['build_finley']
799  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']  if env['usempi']:       build_all_list += ['target_pythonMPI_exe']
800  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_finley_wrapper']  if not IS_WINDOWS_PLATFORM: build_all_list += ['target_escript_wrapper']
801    if env['usesilo']:  build_all_list += ['target_escript2silo']
802  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
803    
804  install_all_list = []  install_all_list = []
# Line 623  install_all_list += ['target_install_pyv Line 811  install_all_list += ['target_install_pyv
811  install_all_list += ['target_install_modellib_py']  install_all_list += ['target_install_modellib_py']
812  install_all_list += ['target_install_pycad_py']  install_all_list += ['target_install_pycad_py']
813  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']  if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']
814  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_finley_wrapper']  if not IS_WINDOWS_PLATFORM: install_all_list += ['target_install_escript_wrapper']
815    if env['usesilo']:  install_all_list += ['target_install_escript2silo']
816  install_all_list += ['remember_options']  install_all_list += ['remember_options']
817  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
818    
# Line 636  env.Alias('build_cppunittest', ['target_ Line 825  env.Alias('build_cppunittest', ['target_
825  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])  env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])
826  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])  env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])
827  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])  env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])
828    env.Alias('build_full',['install_all','build_tests','build_py_tests'])
829    
830  ############ Targets to build the documentation ################  ############ Targets to build the documentation ################
831    
832  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html'])  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html','install_pdf'])
833    
834    if not IS_WINDOWS_PLATFORM:
835       try:
836        utest=open("utest.sh","w")
837        build_platform=os.name      #Sometimes Mac python says it is posix
838        if (build_platform=='posix') and platform.system()=="Darwin":
839            build_platform='darwin'
840        utest.write(GroupTest.makeHeader(build_platform))
841        for tests in TestGroups:
842            utest.write(tests.makeString())
843        utest.close()
844        os.chmod("utest.sh",stat.S_IRWXU|stat.S_IRGRP|stat.S_IXGRP|stat.S_IROTH|stat.S_IXOTH)
845        print "utest.sh written"
846       except IOError:
847        print "Error attempting to write unittests file."
848        sys.exit(1)
849    

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