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revision 1628 by phornby, Fri Jul 11 13:12:46 2008 UTC revision 2458 by jfenwick, Wed Jun 3 06:18:21 2009 UTC
# Line 1  Line 1 
1  #         Copyright 2006 by ACcESS MNRF  
2    ########################################################
3    #
4    # Copyright (c) 2003-2008 by University of Queensland
5    # Earth Systems Science Computational Center (ESSCC)
6    # http://www.uq.edu.au/esscc
7    #
8    # Primary Business: Queensland, Australia
9    # Licensed under the Open Software License version 3.0
10    # http://www.opensource.org/licenses/osl-3.0.php
11  #  #
12  #              http://www.access.edu.au  ########################################################
13  #       Primary Business: Queensland, Australia  
14  #  Licensed under the Open Software License version 3.0  
 #     http://www.opensource.org/licenses/osl-3.0.php  
   
 # top-level Scons configuration file for all esys13 modules  
 # Begin initialisation Section  
 # all of this section just intialises default environments and helper  
 # scripts. You shouldn't need to modify this section.  
15  EnsureSConsVersion(0,96,91)  EnsureSConsVersion(0,96,91)
16  EnsurePythonVersion(2,3)  EnsurePythonVersion(2,3)
17    
18  #===============================================================  import sys, os, re, socket, platform, stat
19  #   import tools:  
 import glob  
 import sys, os, re  
20  # Add our extensions  # Add our extensions
21  if sys.path.count('scons')==0: sys.path.append('scons')  if os.path.isdir('scons'): sys.path.append('scons')
22  import scons_extensions  import scons_extensions
23    
24  # We may also need to know where python's site-packages subdirectory lives  # Use /usr/lib64 if available, else /usr/lib
25  python_version = 'python%s.%s'%(sys.version_info[0],sys.version_info[1])  usr_lib = '/usr/lib'
26    if os.path.isfile('/usr/lib64/libc.so'): usr_lib = '/usr/lib64'
 #===============================================================  
   
 tools_prefix="/usr"  
   
 #==============================================================================================      
 #      
 #    get the installation prefix  
 #  
 prefix = ARGUMENTS.get('prefix', sys.prefix )  
   
 # We may also need to know where python's site-packages subdirectory lives  
 python_version = 'python%s.%s'%(sys.version_info[0],sys.version_info[1])  
 # Install as a standard python package in /usr/lib64 if available, else in /usr/lib  
 if os.path.isdir(  prefix+"/lib64/"+python_version+"/site-packages"):  
    sys_dir_packages =  prefix+"/lib64/"+python_version+"/site-packages/esys"  
    sys_dir_libraries = prefix+"/lib64"  
 else:  
    sys_dir_packages =  prefix+"/lib/"+python_version+"/site-packages/esys"  
    sys_dir_libraries = prefix+"/lib"  
   
 sys_dir_examples = prefix+"/share/doc/esys"  
   
 source_root = Dir('#.').abspath  
   
 dir_packages = os.path.join(source_root,"esys")  
 dir_examples = os.path.join(source_root,"examples")  
 dir_libraries = os.path.join(source_root,"lib")  
   
 print "Source root is : ",source_root  
 print " Default packages local installation:    ", dir_packages  
 print " Default library local installation  ", dir_libraries  
 print " Default example local  installation:    ", dir_examples  
 print "Install prefix is: ", prefix  
 print " Default packages system installation:   ", sys_dir_packages  
 print " Default library system installation     ", sys_dir_libraries  
 print " Default example system installation:    ", sys_dir_examples  
   
 #==============================================================================================      
   
 # Default options and options help text  
 # These are defaults and can be overridden using command line arguments or an options file.  
 # if the options_file or ARGUMENTS do not exist then the ones listed as default here are used  
 # DO NOT CHANGE THEM HERE  
 # Where to install?  
 #==============================================================================================      
 #      
 #    get the options file if present:  
 #  
 options_file = ARGUMENTS.get('options_file','')  
   
 if not os.path.isfile(options_file) :  
     options_file = False  
   
 if not options_file :  
    import socket  
    hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])  
    tmp = os.path.join("scons",hostname+"_options.py")  
27    
28     if os.path.isfile(tmp) :  # The string python2.4 or python2.5
29        options_file = tmp  python_version = 'python%s.%s' % (sys.version_info[0], sys.version_info[1])
30    
31    # MS Windows support, many thanks to PH
32  IS_WINDOWS_PLATFORM = (os.name== "nt")  IS_WINDOWS_PLATFORM = (os.name== "nt")
33    
34  # If you're not going to tell me then......  prefix = ARGUMENTS.get('prefix', Dir('#.').abspath)
 # FIXME: add one for the altix too.  
 if not options_file :  
    if IS_WINDOWS_PLATFORM :  
       options_file = "scons/windows_mscv71_options.py"  
    else:  
       options_file = "scons/linux_gcc_eg_options.py"  
   
 # and load it  
 opts = Options(options_file, ARGUMENTS)  
 #================================================================  
 #  
 #   check if UMFPACK is installed on the system:  
 #  
 uf_root=None  
 for i in [ 'UMFPACK', 'umfpack', 'ufsparse', 'UFSPARSE']:  
    if os.path.isdir(os.path.join(tools_prefix,'include',i)):  
        uf_root=i  
        print i," is used form ",tools_prefix  
        break  
 if not uf_root==None:  
    umf_path_default=os.path.join(tools_prefix,'include',uf_root)  
    umf_lib_path_default=os.path.join(tools_prefix,'lib')  
    umf_libs_default=['umfpack']  
    amd_path_default=os.path.join(tools_prefix,'include',uf_root)  
    amd_lib_path_default=os.path.join(tools_prefix,'lib')  
    amd_libs_default=['amd']  
    ufc_path_default=os.path.join(tools_prefix,'include',uf_root)  
 else:  
    umf_path_default=None  
    umf_lib_path_default=None  
    umf_libs_default=None  
    amd_path_default=None  
    amd_lib_path_default=None  
    amd_libs_default=None  
    ufc_path_default=None  
 #  
 #==========================================================================  
 #  
 #    python installation:  
 #  
 python_path_default=os.path.join(tools_prefix,'include','python%s.%s'%(sys.version_info[0],sys.version_info[1]))  
 python_lib_path_default=os.path.join(tools_prefix,'lib')  
 python_lib_default="python%s.%s"%(sys.version_info[0],sys.version_info[1])  
   
 #==========================================================================  
 #  
 #    boost installation:  
 #  
 boost_path_default=os.path.join(tools_prefix,'include')  
 boost_lib_path_default=os.path.join(tools_prefix,'lib')  
 boost_lib_default=['boost_python']  
35    
36  #==========================================================================  #Determine where to read options from use:
37  #  #1. command line
38  #    check if netCDF is installed on the system:  #2. scons/<hostname>_options.py
39  #  #3. name as part of a cluster
40  netCDF_path_default=os.path.join(tools_prefix,'include','netcdf-3')  options_file=ARGUMENTS.get('options_file', None)
41  netCDF_lib_path_default=os.path.join(tools_prefix,'lib')  if not options_file:
42      hostname = re.sub("[^0-9a-zA-Z]", "_", socket.gethostname().split('.')[0])
43      options_file = os.path.join("scons",hostname+"_options.py")
44      #If there is no options file with that name see if there is a substitute
45      if not os.path.isfile(options_file):
46        tmp = scons_extensions.effectiveName(hostname)
47        options_file = os.path.join("scons",tmp+"_options.py")
48    
49    if not os.path.isfile(options_file):
50      print "Options file not found (expected '%s')" % options_file
51      options_file = False
52    else:
53      print "Options file is", options_file
54    
55    #Does our scons support the newer Variables class or do we need to use Options?
56    
57    try:
58       dummyvar=Variables
59       opts = Variables(options_file, ARGUMENTS)
60       adder = opts.AddVariables
61    except:
62       opts = Options(options_file, ARGUMENTS)
63       adder = opts.AddOptions
64       BoolVariable = BoolOption
65    
66  if os.path.isdir(netCDF_path_default) and os.path.isdir(netCDF_lib_path_default):  ############ Load build options ################################
      useNetCDF_default='yes'  
      netCDF_libs_default=[ 'netcdf_c++', 'netcdf' ]  
 else:  
      useNetCDF_default='no'  
      netCDF_path_default=None  
      netCDF_lib_path_default=None  
      netCDF_libs_default=None  
67    
68  #==========================================================================  adder(
69  #  #opts.AddOptions(
 #  MPI:  
 #  
 if IS_WINDOWS_PLATFORM:  
    useMPI_default='no'  
    mpi_path_default=None  
    mpi_lib_path_default=None  
    mpi_libs_default=[]  
    mpi_run_default=None  
 else:  
    useMPI_default='no'  
    mpi_root='/usr/local'  
    mpi_path_default=os.path.join(mpi_root,'include')  
    mpi_lib_path_default=os.path.join(mpi_root,'lib')  
    mpi_libs_default=[ 'mpich' , 'pthread', 'rt' ]  
    mpi_run_default='mpiexec -np 1'  
 #  
 #==========================================================================  
 #  
 #    compile:  
 #  
 cc_flags_default='-O3 -std=c99 -ffast-math -fpic -Wno-unknown-pragmas -ansi'  
 cc_flags_debug_default='-g -O0 -ffast-math -std=c99 -fpic -Wno-unknown-pragmas -ansi'  
 cxx_flags_default='--no-warn -ansi'  
 cxx_flags_debug_default='--no-warn -ansi -DDOASSERT'  
   
 #==============================================================================================      
 # Default options and options help text  
 # These are defaults and can be overridden using command line arguments or an options file.  
 # if the options_file or ARGUMENTS do not exist then the ones listed as default here are used  
 # DO NOT CHANGE THEM HERE  
 opts.AddOptions(  
70  # Where to install esys stuff  # Where to install esys stuff
71    ('incinstall', 'where the esys headers will be installed',             Dir('#.').abspath+'/include'),    ('prefix', 'where everything will be installed',                       Dir('#.').abspath),
72    ('libinstall', 'where the esys libraries will be installed',           dir_libraries),    ('incinstall', 'where the esys headers will be installed',             os.path.join(Dir('#.').abspath,'include')),
73    ('pyinstall', 'where the esys python modules will be installed',       dir_packages),    ('bininstall', 'where the esys binaries will be installed',            os.path.join(prefix,'bin')),
74    ('exinstall', 'where the esys examples will be installed',             dir_examples),    ('libinstall', 'where the esys libraries will be installed',           os.path.join(prefix,'lib')),
75    ('sys_libinstall', 'where the system esys libraries will be installed',       sys_dir_libraries),    ('pyinstall', 'where the esys python modules will be installed',       os.path.join(prefix,'esys')),
   ('sys_pyinstall', 'where the system esys python modules will be installed',   sys_dir_packages),  
   ('sys_exinstall', 'where the system esys examples will be installed',         sys_dir_examples),  
   ('src_zipfile', 'the source zip file will be installed.',              Dir('#.').abspath+"/release/escript_src.zip"),  
   ('test_zipfile', 'the test zip file will be installed.',               Dir('#.').abspath+"/release/escript_tests.zip"),  
   ('src_tarfile', 'the source tar file will be installed.',              Dir('#.').abspath+"/release/escript_src.tar.gz"),  
   ('test_tarfile', 'the test tar file will be installed.',               Dir('#.').abspath+"/release/escript_tests.tar.gz"),  
   ('examples_tarfile', 'the examples tar file will be installed.',       Dir('#.').abspath+"/release/doc/escript_examples.tar.gz"),  
   ('examples_zipfile', 'the examples zip file will be installed.',       Dir('#.').abspath+"/release/doc/escript_examples.zip"),  
   ('guide_pdf', 'name of the user guide in pdf format',                  Dir('#.').abspath+"/release/doc/user/guide.pdf"),  
   ('api_epydoc', 'name of the epydoc api docs directory',                Dir('#.').abspath+"/release/doc/epydoc"),  
   ('guide_html', 'name of the directory for user guide in html format',  Dir('#.').abspath+"/release/doc/user/html"),  
   ('api_doxygen', 'name of the doxygen api docs directory',prefix+"/release/doc/doxygen"),  
76  # Compilation options  # Compilation options
77    BoolOption('dodebug', 'Do you want a debug build?', 'no'),    BoolVariable('dodebug', 'For backwards compatibility', 'no'),
78    BoolOption('bounds_check', 'Do you want extra array bounds checking?', 'no'),    BoolVariable('usedebug', 'Do you want a debug build?', 'no'),
79    ('options_file', "Optional file containing preferred options. Ignored if it doesn't exist (default: scons/<hostname>_options.py)", options_file),    BoolVariable('usevtk', 'Do you want to use VTK?', 'yes'),
80    ('cc_defines','C/C++ defines to use', None),    ('options_file', 'File of paths/options. Default: scons/<hostname>_options.py', options_file),
81    ('cc_flags','C compiler flags to use (Release build)', cc_flags_default),    ('win_cc_name', 'windows C compiler name if needed', 'msvc'),
82    ('cc_flags_debug', 'C compiler flags to use (Debug build)', cc_flags_debug_default),    # The strings -DDEFAULT_ get replaced by scons/<hostname>_options.py or by defaults below
83    ('cxx_flags', 'C++ compiler flags to use (Release build)', cxx_flags_default),    ('cc_flags', 'C compiler flags to use', '-DEFAULT_1'),
84    ('cxx_flags_debug', 'C++ compiler flags to use (Debug build)', cxx_flags_debug_default),    ('cc_optim', 'C compiler optimization flags to use', '-DEFAULT_2'),
85    ('link_flags', 'Linker flags to use (Release build)', None),    ('cc_debug', 'C compiler debug flags to use', '-DEFAULT_3'),
86    ('link_flags_debug', 'Linker flags to use (Debug build)', None),    ('omp_optim', 'OpenMP compiler flags to use (Release build)', '-DEFAULT_4'),
87      ('omp_debug', 'OpenMP compiler flags to use (Debug build)', '-DEFAULT_5'),
88    ('omp_flags', 'OpenMP compiler flags to use (Release build)', ''),    ('omp_libs', 'OpenMP compiler libraries to link with', '-DEFAULT_6'),
89    ('omp_flags_debug', 'OpenMP compiler flags to use (Debug build)', ''),    ('cc_extra', 'Extra C/C++ flags', ''),
90    ('ar_flags', 'Static library archiver flags to use', None),    ('ld_extra', 'Extra linker flags', ''),
91    ('sys_libs', 'System libraries to link with', None),    ('sys_libs', 'System libraries to link with', []),
92    ('tar_flags','flags for zip files','-c -z'),    ('ar_flags', 'Static library archiver flags to use', ''),
93  # MKL    BoolVariable('useopenmp', 'Compile parallel version using OpenMP', 'no'),
94    PathOption('mkl_path', 'Path to MKL includes', None),    BoolVariable('usepedantic', 'Compile with -pedantic if using gcc', 'no'),
95    PathOption('mkl_lib_path', 'Path to MKL libs', None),    BoolVariable('usewarnings','Compile with warnings as errors if using gcc','yes'),
96    ('mkl_libs', 'MKL libraries to link with', None),    ('forcelazy','for testing use only - set the default value for autolazy','leave_alone'),
 # SCSL  
   PathOption('scsl_path', 'Path to SCSL includes', None),  
   PathOption('scsl_lib_path', 'Path to SCSL libs', None),  
   ('scsl_libs', 'SCSL libraries to link with', None),  
   ('scsl_libs_MPI', 'SCSL libraries to link with for MPI build', None),  
 # UMFPACK  
   PathOption('ufc_path', 'Path to UFconfig includes', ufc_path_default),  
   PathOption('umf_path', 'Path to UMFPACK includes', umf_path_default),  
   PathOption('umf_lib_path', 'Path to UMFPACK libs', umf_lib_path_default),  
   ('umf_libs', 'UMFPACK libraries to link with', umf_libs_default),  
 # AMD (used by UMFPACK)  
   PathOption('amd_path', 'Path to AMD includes', amd_path_default),  
   PathOption('amd_lib_path', 'Path to AMD libs', amd_lib_path_default),  
   ('amd_libs', 'AMD libraries to link with', amd_libs_default),  
 # ParMETIS  
   ('parmetis_path', 'Path to ParMETIS includes', ''),  
   ('parmetis_lib_path', 'Path to ParMETIS library', ''),  
   ('parmetis_lib', 'ParMETIS library to link with', []),  
 # TRILINOS  
   PathOption('trilinos_path', 'Path to TRILINOS includes', None),  
   PathOption('trilinos_lib_path', 'Path to TRILINOS libs', None),  
   ('trilinos_libs', 'TRILINOS libraries to link with', None),  
 # BLAS  
   PathOption('blas_path', 'Path to BLAS includes', None),  
   PathOption('blas_lib_path', 'Path to BLAS libs', None),  
   ('blas_libs', 'BLAS libraries to link with', None),  
 # netCDF  
   ('useNetCDF', 'switch on/off the usage of netCDF', useNetCDF_default),  
   PathOption('netCDF_path', 'Path to netCDF includes', netCDF_path_default),  
   PathOption('netCDF_lib_path', 'Path to netCDF libs', netCDF_lib_path_default),  
   ('netCDF_libs', 'netCDF C++ libraries to link with', netCDF_libs_default),  
97  # Python  # Python
98  # locations of include files for python    ('python_path', 'Path to Python includes', '/usr/include/'+python_version),
99  # FIXME: python_path should be python_inc_path and the same for boost etc.    ('python_lib_path', 'Path to Python libs', usr_lib),
100    PathOption('python_path', 'Path to Python includes', python_path_default),    ('python_libs', 'Python libraries to link with', [python_version]),
   PathOption('python_lib_path', 'Path to Python libs', python_lib_path_default),  
   ('python_lib', 'Python libraries to link with', python_lib_default),  
101    ('python_cmd', 'Python command', 'python'),    ('python_cmd', 'Python command', 'python'),
102  # Boost  # Boost
103    PathOption('boost_path', 'Path to Boost includes', boost_path_default),    ('boost_path', 'Path to Boost includes', '/usr/include'),
104    PathOption('boost_lib_path', 'Path to Boost libs', boost_lib_path_default),    ('boost_lib_path', 'Path to Boost libs', usr_lib),
105    ('boost_lib', 'Boost libraries to link with', boost_lib_default),    ('boost_libs', 'Boost libraries to link with', ['boost_python']),
106  # Doc building  # NetCDF
107  #  PathOption('doxygen_path', 'Path to Doxygen executable', None),    BoolVariable('usenetcdf', 'switch on/off the usage of netCDF', 'yes'),
108  #  PathOption('epydoc_path', 'Path to Epydoc executable', None),    ('netCDF_path', 'Path to netCDF includes', '/usr/include'),
109  # PAPI    ('netCDF_lib_path', 'Path to netCDF libs', usr_lib),
110    PathOption('papi_path', 'Path to PAPI includes', None),    ('netCDF_libs', 'netCDF C++ libraries to link with', ['netcdf_c++', 'netcdf']),
   PathOption('papi_lib_path', 'Path to PAPI libs', None),  
   ('papi_libs', 'PAPI libraries to link with', None),  
   ('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', None),  
111  # MPI  # MPI
112    BoolOption('useMPI', 'Compile parallel version using MPI', useMPI_default),    BoolVariable('useMPI', 'For backwards compatibility', 'no'),
113      BoolVariable('usempi', 'Compile parallel version using MPI', 'no'),
114    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),    ('MPICH_IGNORE_CXX_SEEK', 'name of macro to ignore MPI settings of C++ SEEK macro (for MPICH)' , 'MPICH_IGNORE_CXX_SEEK'),
115    PathOption('mpi_path', 'Path to MPI includes', mpi_path_default),    ('mpi_path', 'Path to MPI includes', '/usr/include'),
116    ('mpi_run', 'mpirun name' , mpi_run_default),    ('mpi_run', 'mpirun name' , 'mpiexec -np 1'),
117    PathOption('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)',mpi_lib_path_default),    ('mpi_lib_path', 'Path to MPI libs (needs to be added to the LD_LIBRARY_PATH)', usr_lib),
118    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', mpi_libs_default)    ('mpi_libs', 'MPI libraries to link with (needs to be shared!)', ['mpich' , 'pthread', 'rt']),
119      ('mpi_flavour','Type of MPI execution environment','none'),
120    # ParMETIS
121      BoolVariable('useparmetis', 'Compile parallel version using ParMETIS', 'yes'),
122      ('parmetis_path', 'Path to ParMETIS includes', '/usr/include'),
123      ('parmetis_lib_path', 'Path to ParMETIS library', usr_lib),
124      ('parmetis_libs', 'ParMETIS library to link with', ['parmetis', 'metis']),
125    # PAPI
126      BoolVariable('usepapi', 'switch on/off the usage of PAPI', 'no'),
127      ('papi_path', 'Path to PAPI includes', '/usr/include'),
128      ('papi_lib_path', 'Path to PAPI libs', usr_lib),
129      ('papi_libs', 'PAPI libraries to link with', ['papi']),
130      BoolVariable('papi_instrument_solver', 'use PAPI in Solver.c to instrument each iteration of the solver', False),
131    # MKL
132      BoolVariable('usemkl', 'switch on/off the usage of MKL', 'no'),
133      ('mkl_path', 'Path to MKL includes', '/sw/sdev/cmkl/10.0.2.18/include'),
134      ('mkl_lib_path', 'Path to MKL libs', '/sw/sdev/cmkl/10.0.2.18/lib/em64t'),
135      ('mkl_libs', 'MKL libraries to link with', ['mkl_solver', 'mkl_em64t', 'guide', 'pthread']),
136    # UMFPACK
137      BoolVariable('useumfpack', 'switch on/off the usage of UMFPACK', 'no'),
138      ('ufc_path', 'Path to UFconfig includes', '/usr/include/suitesparse'),
139      ('umf_path', 'Path to UMFPACK includes', '/usr/include/suitesparse'),
140      ('umf_lib_path', 'Path to UMFPACK libs', usr_lib),
141      ('umf_libs', 'UMFPACK libraries to link with', ['umfpack']),
142    # Silo
143      BoolVariable('usesilo', 'switch on/off the usage of Silo', 'yes'),
144      ('silo_path', 'Path to Silo includes', '/usr/include'),
145      ('silo_lib_path', 'Path to Silo libs', usr_lib),
146      ('silo_libs', 'Silo libraries to link with', ['siloh5', 'hdf5']),
147    # AMD (used by UMFPACK)
148      ('amd_path', 'Path to AMD includes', '/usr/include/suitesparse'),
149      ('amd_lib_path', 'Path to AMD libs', usr_lib),
150      ('amd_libs', 'AMD libraries to link with', ['amd']),
151    # BLAS (used by UMFPACK)
152      ('blas_path', 'Path to BLAS includes', '/usr/include/suitesparse'),
153      ('blas_lib_path', 'Path to BLAS libs', usr_lib),
154      ('blas_libs', 'BLAS libraries to link with', ['blas']),
155    # An option for specifying the compiler tools set (see windows branch).
156      ('tools_names', 'allow control over the tools in the env setup', ['intelc']),
157    # finer control over library building, intel aggressive global optimisation
158    # works with dynamic libraries on windows.
159      ('share_esysUtils', 'control static or dynamic esysUtils lib', False),
160      ('share_paso', 'control static or dynamic paso lib', False)
161  )  )
162  #=================================================================================================  
163  #  ############ Specify which compilers to use ####################
164  #   Note: On the Altix the intel compilers are not automatically  
165  #   detected by scons intelc.py script. The Altix has a different directory  # intelc uses regular expressions improperly and emits a warning about
166  #   path and in some locations the "modules" facility is used to support  # failing to find the compilers.  This warning can be safely ignored.
 #   multiple compiler versions. This forces the need to import the users PATH  
 #   environment which isn't the "scons way"  
 #   This doesn't impact linux and windows which will use the default compiler (g++ or msvc, or the intel compiler if it is installed on both platforms)  
 #   FIXME: Perhaps a modification to intelc.py will allow better support for ia64 on altix  
 #  
167    
168  if IS_WINDOWS_PLATFORM:  if IS_WINDOWS_PLATFORM:
169        env = Environment(tools = ['default', 'msvc'], options = opts)        env = Environment(options = opts)
170        #env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default'] + env['tools_names'],
171                            options = opts)
172  else:  else:
173     if socket.gethostname().split('.')[0] == 'service0':     if socket.gethostname().split('.')[0] == 'service0':
174        env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default', 'intelc'], options = opts)
175     elif os.uname()[4]=='ia64':     elif os.uname()[4]=='ia64':
176        env = Environment(tools = ['default', 'intelc'], options = opts)        env = Environment(tools = ['default', 'intelc'], options = opts)
177        if env['CXX'] == 'icpc':        if env['CXX'] == 'icpc':
178           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not). FIXME: this behaviour could be directly incorporated into scons intelc.py           env['LINK'] = env['CXX'] # version >=9 of intel c++ compiler requires use of icpc to link in C++ runtimes (icc does not)
179     else:     else:
180        env = Environment(tools = ['default'], options = opts)        env = Environment(tools = ['default'], options = opts)
181  Help(opts.GenerateHelpText(env))  Help(opts.GenerateHelpText(env))
182    
183  if env['bounds_check']:  ############ Fill in compiler options if not set above #########
    env.Append(CPPDEFINES = [ 'BOUNDS_CHECK' ])  
    env.Append(CXXDEFINES = [ 'BOUNDS_CHECK' ])  
    bounds_check = env['bounds_check']  
 else:  
    bounds_check = 0  
184    
185  #=================================================================================================  # Backwards compatibility: allow dodebug=yes and useMPI=yes
186  #  if env['dodebug']: env['usedebug'] = 1
187  #     Initialise Scons Build Environment  if env['useMPI']: env['usempi'] = 1
188  #     check for user environment variables we are interested in  
189  try:  # Default compiler options (override allowed in hostname_options.py, but should not be necessary)
190     tmp = os.environ['PYTHONPATH']  # For both C and C++ you get: cc_flags and either the optim flags or debug flags
191     env['ENV']['PYTHONPATH'] = tmp  
192  except KeyError:  sysheaderopt = ""       # how do we indicate that a header is a system header. Use "" for no action.
193     pass  
194    if env["CC"] == "icc":
195      # Intel compilers
196      cc_flags      = "-fPIC -ansi -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"
197      cc_optim      = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias"
198      cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
199      omp_optim     = "-openmp -openmp_report0"
200      omp_debug     = "-openmp -openmp_report0"
201      omp_libs      = ['guide', 'pthread']
202      pedantic      = ""
203      fatalwarning      = ""        # Switch to turn warnings into errors
204      sysheaderopt      = ""
205    elif env["CC"] == "gcc":
206      # GNU C on any system
207      cc_flags      = "-pedantic -Wall -fPIC -ansi -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing"
208    #the long long warning occurs on the Mac
209      cc_optim      = "-O3"
210      cc_debug      = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
211      omp_optim     = "-fopenmp"
212      omp_debug     = "-fopenmp"
213      omp_libs      = ['gomp']
214      pedantic      = "-pedantic-errors -Wno-long-long"
215      fatalwarning      = "-Werror"
216      sysheaderopt      = "-isystem "
217    elif env["CC"] == "cl":
218      # Microsoft Visual C on Windows
219      cc_flags      = "/FD /EHsc /GR /wd4068 -D_USE_MATH_DEFINES -DDLL_NETCDF"
220      cc_optim      = "/O2 /Op /MT /W3"
221      cc_debug      = "/Od /RTC1 /MTd /ZI -DBOUNDS_CHECK"
222      omp_optim     = ""
223      omp_debug     = ""
224      omp_libs      = []
225      pedantic      = ""
226      fatalwarning      = ""
227      sysheaderopt      = ""
228    elif env["CC"] == "icl":
229      # intel C on Windows, see windows_intelc_options.py for a start
230      pedantic      = ""
231      fatalwarning      = ""
232      sysheaderopt      = ""
233    
234    
235    # If not specified in hostname_options.py then set them here
236    if env["cc_flags"]  == "-DEFAULT_1": env['cc_flags'] = cc_flags
237    if env["cc_optim"]  == "-DEFAULT_2": env['cc_optim'] = cc_optim
238    if env["cc_debug"]  == "-DEFAULT_3": env['cc_debug'] = cc_debug
239    if env["omp_optim"] == "-DEFAULT_4": env['omp_optim'] = omp_optim
240    if env["omp_debug"] == "-DEFAULT_5": env['omp_debug'] = omp_debug
241    if env["omp_libs"]  == "-DEFAULT_6": env['omp_libs'] = omp_libs
242    
243    #set up the autolazy values
244    if env['forcelazy']    != "leave_alone":
245      if env['forcelazy'] == 'on':
246        env.Append(CPPDEFINES='FAUTOLAZYON')
247      else:
248         if env['forcelazy'] == 'off':
249        env.Append(CPPDEFINES='FAUTOLAZYOFF')
250    
251    # OpenMP is disabled if useopenmp=no or both variables omp_optim and omp_debug are empty
252    if not env["useopenmp"]:
253      env['omp_optim'] = ""
254      env['omp_debug'] = ""
255      env['omp_libs'] = []
256    
257  env.PrependENVPath('PYTHONPATH', source_root)  if env['omp_optim'] == "" and env['omp_debug'] == "": env["useopenmp"] = 0
258    
259  try:  # Windows doesn't use LD_LIBRARY_PATH but PATH instead
260     omp_num_threads = os.environ['OMP_NUM_THREADS']  if IS_WINDOWS_PLATFORM:
261  except KeyError:      LD_LIBRARY_PATH_KEY='PATH'
262     omp_num_threads = 1      env['ENV']['LD_LIBRARY_PATH']=''
263  env['ENV']['OMP_NUM_THREADS'] = omp_num_threads  else:
264        LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'
265    ############ Copy environment variables into scons env #########
266    
267  try:  try: env['ENV']['OMP_NUM_THREADS'] = os.environ['OMP_NUM_THREADS']
268     path = os.environ['PATH']  except KeyError: env['ENV']['OMP_NUM_THREADS'] = 1
    env['ENV']['PATH'] = path  
 except KeyError:  
    omp_num_threads = 1  
269    
270  env['ENV']['OMP_NUM_THREADS'] = omp_num_threads  try: env['ENV']['ESCRIPT_NUM_THREADS'] = os.environ['ESCRIPT_NUM_THREADS']
271    except KeyError: pass
272    
273    try: env['ENV']['ESCRIPT_NUM_PROCS'] = os.environ['ESCRIPT_NUM_PROCS']
274    except KeyError: env['ENV']['ESCRIPT_NUM_PROCS']=1
275    
276  # Copy some variables from the system environment to the build environment  try: env['ENV']['ESCRIPT_NUM_NODES'] = os.environ['ESCRIPT_NUM_NODES']
277  try:  except KeyError: env['ENV']['ESCRIPT_NUM_NODES']=1
    env['ENV']['DISPLAY'] = os.environ['DISPLAY']  
    env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']  
    home_temp = os.environ['HOME']   # MPICH2's mpd needs $HOME to find $HOME/.mpd.conf  
    env['ENV']['HOME'] = home_temp  
 except KeyError:  
    pass  
278    
279  try:  try: env['ENV']['ESCRIPT_HOSTFILE'] = os.environ['ESCRIPT_HOSTFILE']
280     tmp = os.environ['PATH']  except KeyError: pass
    env['ENV']['PATH'] = tmp  
 except KeyError:  
    pass  
281    
282  try:  try: env['ENV']['PATH'] = os.environ['PATH']
283     tmp = os.environ['LD_LIBRARY_PATH']  except KeyError: pass
    env['ENV']['LD_LIBRARY_PATH'] = tmp  
 except KeyError:  
    pass  
 #==========================================================================  
 #  
 #    Add some customer builders  
 #  
 py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  
 env.Append(BUILDERS = {'PyCompile' : py_builder});  
284    
285  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed',  try: env['ENV']['PYTHONPATH'] = os.environ['PYTHONPATH']
286                                src_suffix=env['PROGSUFFIX'], single_source=True)  except KeyError: pass
287    
288  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});  try: env['ENV']['C_INCLUDE_PATH'] = os.environ['C_INCLUDE_PATH']
289    except KeyError: pass
290    
291  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  try: env['ENV']['CPLUS_INCLUDE_PATH'] = os.environ['CPLUS_INCLUDE_PATH']
292  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  except KeyError: pass
293    
294  # Convert the options which are held in environment variable into python variables for ease of handling and configure compilation options  try: env.PrependENVPath(LD_LIBRARY_PATH_KEY,os.environ['LD_LIBRARY_PATH'])
295  try:  except KeyError: pass
    incinstall = env['incinstall']  
    env.Append(CPPPATH = [incinstall,])  
 except KeyError:  
    incinstall = None  
 try:  
    libinstall = env['libinstall']  
    env.Append(LIBPATH = [libinstall,]) # Adds -L for building of libescript.so libfinley.so escriptcpp.so finleycpp.so  
    env.PrependENVPath('LD_LIBRARY_PATH', libinstall)  
    if IS_WINDOWS_PLATFORM :  
       env.PrependENVPath('PATH', libinstall)  
       env.PrependENVPath('PATH', env['boost_lib_path'])  
 except KeyError:  
    libinstall = None  
 try:  
    pyinstall = env['pyinstall'] # all targets will install into pyinstall/esys but PYTHONPATH points at straight pyinstall so you go import esys.escript etc  
 except KeyError:  
    pyinstall = None  
296    
297  try:  try: env['ENV']['LIBRARY_PATH'] = os.environ['LIBRARY_PATH']
298     cc_defines = env['cc_defines']  except KeyError: pass
    env.Append(CPPDEFINES = cc_defines)  
 except KeyError:  
    pass  
 try:  
    flags = env['ar_flags']  
    env.Append(ARFLAGS = flags)  
 except KeyError:  
    ar_flags = None  
 try:  
    sys_libs = env['sys_libs']  
 except KeyError:  
    sys_libs = []  
299    
300  try:  try: env['ENV']['DISPLAY'] = os.environ['DISPLAY']
301     tar_flags = env['tar_flags']  except KeyError: pass
    env.Replace(TARFLAGS = tar_flags)  
 except KeyError:  
    pass  
302    
303  try:  try: env['ENV']['XAUTHORITY'] = os.environ['XAUTHORITY']
304     exinstall = env['exinstall']  except KeyError: pass
 except KeyError:  
    exinstall = None  
 try:  
    sys_libinstall = env['sys_libinstall']  
 except KeyError:  
    sys_libinstall = None  
 try:  
    sys_pyinstall = env['sys_pyinstall']  
 except KeyError:  
    sys_pyinstall = None  
 try:  
    sys_exinstall = env['sys_exinstall']  
 except KeyError:  
    sys_exinstall = None  
305    
306  # ====================== debugging ===================================  try: env['ENV']['HOME'] = os.environ['HOME']
307  try:  except KeyError: pass
    dodebug = env['dodebug']  
 except KeyError:  
    dodebug = None  
308    
309  # === switch on omp ===================================================  # Configure for test suite
 try:  
   omp_flags = env['omp_flags']  
 except KeyError:  
   omp_flags = ''  
310    
 try:  
   omp_flags_debug = env['omp_flags_debug']  
 except KeyError:  
   omp_flags_debug = ''  
311    
312  # ========= use mpi? =====================================================  env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
313  try:  env.PrependENVPath('PYTHONPATH', prefix)
314     useMPI = env['useMPI']  env['ENV']['ESCRIPT_ROOT'] = prefix
 except KeyError:  
    useMPI = None  
 # ========= set compiler flags ===========================================  
   
 if dodebug:  
     try:  
       flags = env['cc_flags_debug'] + ' ' + omp_flags_debug  
       env.Append(CCFLAGS = flags)  
     except KeyError:  
       pass  
 else:  
    try:  
       flags = env['cc_flags'] + ' ' + omp_flags  
       env.Append(CCFLAGS = flags)  
    except KeyError:  
       pass  
 if dodebug:  
      try:  
         flags = env['cxx_flags_debug']  
         env.Append(CXXFLAGS = flags)  
      except KeyError:  
         pass  
 else:  
      try:  
         flags = env['cxx_flags']  
         env.Append(CXXFLAGS = flags)  
      except KeyError:  
         pass  
 try:  
      if env['CC'] == 'gcc': env.Append(CCFLAGS = "-pedantic-errors -Wno-long-long")  
 except:  
      pass  
 if dodebug:  
      try:  
         flags = env['link_flags_debug']  
         env.Append(LINKFLAGS = flags)  
      except KeyError:  
         pass  
 else:  
      try:  
         flags = env['link_flags']  
         env.Append(LINKFLAGS = flags)  
      except KeyError:  
         pass  
315    
316  # ============= Remember what options were used in the compile =====================================  ############ Set up paths for Configure() ######################
 if not IS_WINDOWS_PLATFORM:  
   env.Execute("/bin/rm -f " + libinstall + "/Compiled.with.*")  
   if dodebug:       env.Execute("touch " + libinstall + "/Compiled.with.debug")  
   if useMPI:        env.Execute("touch " + libinstall + "/Compiled.with.mpi")  
   if omp_flags != '':   env.Execute("touch " + libinstall + "/Compiled.with.OpenMP")  
   if bounds_check:  env.Execute("touch " + libinstall + "/Compiled.with.bounds_check")  
317    
318  # ============= set mkl (but only of no MPI) =====================================  # Make a copy of an environment
319  if not useMPI:  # Use env.Clone if available, but fall back on env.Copy for older version of scons
320     try:  def clone_env(env):
321        includes = env['mkl_path']    if 'Clone' in dir(env): return env.Clone()    # scons-0.98
322        env.Append(CPPPATH = [includes,])    else:                   return env.Copy() # scons-0.96
    except KeyError:  
       pass  
323    
324     try:  # Add cc option -I<Escript>/trunk/include
325        lib_path = env['mkl_lib_path']  env.Append(CPPPATH      = [Dir('include')])
       env.Append(LIBPATH = [lib_path,])  
       env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    except KeyError:  
       pass  
   
    try:  
       mkl_libs = env['mkl_libs']  
    except KeyError:  
       mkl_libs = []  
 else:  
      mkl_libs = []  
   
 # ============= set scsl (but only of no MPI) =====================================  
 if not useMPI:  
    try:  
       includes = env['scsl_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
   
    try:  
       lib_path = env['scsl_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
       env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    except KeyError:  
       pass  
     
    try:  
       scsl_libs = env['scsl_libs']  
    except KeyError:  
       scsl_libs = [ ]  
   
 else:  
     scsl_libs =  []  
326    
327  # ============= set TRILINOS (but only with MPI) =====================================  # Add cc option -L<Escript>/trunk/lib
328  if useMPI:  env.Append(LIBPATH      = [Dir(env['libinstall'])])
    try:  
       includes = env['trilinos_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
329    
330     try:  if env['cc_extra'] != '': env.Append(CCFLAGS = env['cc_extra'])
331        lib_path = env['trilinos_lib_path']  if env['ld_extra'] != '': env.Append(LINKFLAGS = env['ld_extra'])
       env.Append(LIBPATH = [lib_path,])  
    except KeyError:  
       pass  
332    
333     try:  if env['usepedantic']: env.Append(CCFLAGS = pedantic)
       trilinos_libs = env['trilinos_libs']  
    except KeyError:  
       trilinos_libs = []  
 else:  
      trilinos_libs = []  
334    
335    # MS Windows
336    if IS_WINDOWS_PLATFORM:
337      env.AppendENVPath('PATH', [env['boost_lib_path']])
338      env.AppendENVPath('PATH', [env['libinstall']])
339      if not env['share_esysUtils'] :
340        env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
341      if not env['share_paso'] :
342        env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
343    
344      if env['usenetcdf']:
345        env.AppendENVPath('PATH',   [env['netCDF_lib_path']])
346    
347  # ============= set umfpack (but only without MPI) =====================================  env.Append(ARFLAGS = env['ar_flags'])
 umf_libs=[ ]  
 if not useMPI:  
    try:  
       includes = env['umf_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
348    
349     try:  # Get the global Subversion revision number for getVersion() method
350        lib_path = env['umf_lib_path']  try:
351        env.Append(LIBPATH = [lib_path,])     global_revision = os.popen("svnversion -n .").read()
352     except KeyError:     global_revision = re.sub(":.*", "", global_revision)
353        pass     global_revision = re.sub("[^0-9]", "", global_revision)
354    except:
355       global_revision="-1"
356    if global_revision == "": global_revision="-2"
357    env.Append(CPPDEFINES = ["SVN_VERSION="+global_revision])
358    
359     try:  ############ numpy (required) ###############################
       umf_libs = env['umf_libs']  
       umf_libs+=umf_libs  
    except KeyError:  
       pass  
360    
361     try:  try:
362        includes = env['ufc_path']    from numpy import identity
363        env.Append(CPPPATH = [includes,])  except ImportError:
364     except KeyError:    print "Cannot import numpy, you need to set your PYTHONPATH"
365        pass    sys.exit(1)
366    
367    ############ C compiler (required) #############################
368    
369    # Create a Configure() environment for checking existence of required libraries and headers
370    conf = Configure(clone_env(env))
371    
372    # Test that the compiler is working
373    if not conf.CheckFunc('printf'):
374       print "Cannot run C compiler '%s' (or libc is missing)" % (env['CC'])
375       sys.exit(1)
376    
377    if conf.CheckFunc('gethostname'):
378      conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])
379    
380    ############ python libraries (required) #######################
381    
382    
383    if not sysheaderopt =="":
384      conf.env.Append(CCFLAGS=sysheaderopt+env['python_path'])
385    else:
386      conf.env.AppendUnique(CPPPATH     = [env['python_path']])
387    
388    conf.env.AppendUnique(LIBPATH       = [env['python_lib_path']])
389    conf.env.AppendUnique(LIBS      = [env['python_libs']])
390    
391    conf.env.PrependENVPath('PYTHONPATH', prefix)
392    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['python_lib_path'])    # The wrapper script needs to find these libs
393    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
394    
395    if not conf.CheckCHeader('Python.h'):
396      print "Cannot find python include files (tried 'Python.h' in directory %s)" % (env['python_path'])
397      sys.exit(1)
398    if not conf.CheckFunc('Py_Exit'):
399      print "Cannot find python library method Py_Main (tried lib %s in directory %s)" % (env['python_libs'], env['python_lib_path'])
400      sys.exit(1)
401    
402    ############ boost (required) ##################################
403    
404    if not sysheaderopt =="":
405    # This is required because we can't -isystem /usr/system because it breaks std includes
406      if os.path.normpath(env['boost_path']) =="/usr/include":
407        conf.env.Append(CCFLAGS=sysheaderopt+os.path.join(env['boost_path'],'boost'))
408      else:
409        conf.env.Append(CCFLAGS=sysheaderopt+env['boost_path'])
410    else:
411      conf.env.AppendUnique(CPPPATH     = [env['boost_path']])
412    
413    conf.env.AppendUnique(LIBPATH       = [env['boost_lib_path']])
414    conf.env.AppendUnique(LIBS      = [env['boost_libs']])
415    
416    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['boost_lib_path']) # The wrapper script needs to find these libs
417    #ensure that our path entries remain at the front
418    conf.env.PrependENVPath('PYTHONPATH', prefix)
419    conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
420    
421    if not conf.CheckCXXHeader('boost/python.hpp'):
422      print "Cannot find boost include files (tried boost/python.hpp in directory %s)" % (env['boost_path'])
423      sys.exit(1)
424    
425    if not conf.CheckFunc('PyObject_SetAttr'):
426      print "Cannot find boost library method PyObject_SetAttr (tried method PyObject_SetAttr in library %s in directory %s)" % (env['boost_libs'], env['boost_lib_path'])
427      sys.exit(1)
428    
429    # Commit changes to environment
430    env = conf.Finish()
431    
432    ############ VTK (optional) ####################################
433    
434    if env['usevtk']:
435      try:
436        import vtk
437        env['usevtk'] = 1
438      except ImportError:
439        env['usevtk'] = 0
440    
441    # Add VTK to environment env if it was found
442    if env['usevtk']:
443      env.Append(CPPDEFINES = ['USE_VTK'])
444    
445    ############ NetCDF (optional) #################################
446    
447    conf = Configure(clone_env(env))
448    
449    if env['usenetcdf']:
450      conf.env.AppendUnique(CPPPATH = [env['netCDF_path']])
451      conf.env.AppendUnique(LIBPATH = [env['netCDF_lib_path']])
452      conf.env.AppendUnique(LIBS    = [env['netCDF_libs']])
453      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['netCDF_lib_path'])  # The wrapper script needs to find these libs
454      #ensure that our path entries remain at the front
455      conf.env.PrependENVPath('PYTHONPATH', prefix)
456      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
457    
458    if env['usenetcdf'] and not conf.CheckCHeader('netcdf.h'): env['usenetcdf'] = 0
459    if env['usenetcdf'] and not conf.CheckFunc('nc_open'): env['usenetcdf'] = 0
460    
461    # Add NetCDF to environment env if it was found
462    if env['usenetcdf']:
463      env = conf.Finish()
464      env.Append(CPPDEFINES = ['USE_NETCDF'])
465    else:
466      conf.Finish()
467    
468    ############ PAPI (optional) ###################################
469    
470    # Start a new configure environment that reflects what we've already found
471    conf = Configure(clone_env(env))
472    
473    if env['usepapi']:
474      conf.env.AppendUnique(CPPPATH = [env['papi_path']])
475      conf.env.AppendUnique(LIBPATH = [env['papi_lib_path']])
476      conf.env.AppendUnique(LIBS    = [env['papi_libs']])
477      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['papi_lib_path'])    # The wrapper script needs to find these libs
478      #ensure that our path entries remain at the front
479      conf.env.PrependENVPath('PYTHONPATH', prefix)
480      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
481    
482    if env['usepapi'] and not conf.CheckCHeader('papi.h'): env['usepapi'] = 0
483    if env['usepapi'] and not conf.CheckFunc('PAPI_start_counters'): env['usepapi'] = 0
484    
485    # Add PAPI to environment env if it was found
486    if env['usepapi']:
487      env = conf.Finish()
488      env.Append(CPPDEFINES = ['BLOCKPAPI'])
489    else:
490      conf.Finish()
491    
492    ############ MKL (optional) ####################################
493    
494    # Start a new configure environment that reflects what we've already found
495    conf = Configure(clone_env(env))
496    
497    if env['usemkl']:
498      conf.env.AppendUnique(CPPPATH = [env['mkl_path']])
499      conf.env.AppendUnique(LIBPATH = [env['mkl_lib_path']])
500      conf.env.AppendUnique(LIBS    = [env['mkl_libs']])
501      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['mkl_lib_path']) # The wrapper script needs to find these libs
502      #ensure that our path entries remain at the front
503      conf.env.PrependENVPath('PYTHONPATH', prefix)
504      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
505    
506    if env['usemkl'] and not conf.CheckCHeader('mkl_solver.h'): env['usemkl'] = 0
507    if env['usemkl'] and not conf.CheckFunc('pardiso'): env['usemkl'] = 0
508    
509    # Add MKL to environment env if it was found
510    if env['usemkl']:
511      env = conf.Finish()
512      env.Append(CPPDEFINES = ['MKL'])
513    else:
514      conf.Finish()
515    
516    ############ UMFPACK (optional) ################################
517    
518    # Start a new configure environment that reflects what we've already found
519    conf = Configure(clone_env(env))
520    
521    if env['useumfpack']:
522      conf.env.AppendUnique(CPPPATH = [env['ufc_path']])
523      conf.env.AppendUnique(CPPPATH = [env['umf_path']])
524      conf.env.AppendUnique(LIBPATH = [env['umf_lib_path']])
525      conf.env.AppendUnique(LIBS    = [env['umf_libs']])
526      conf.env.AppendUnique(CPPPATH = [env['amd_path']])
527      conf.env.AppendUnique(LIBPATH = [env['amd_lib_path']])
528      conf.env.AppendUnique(LIBS    = [env['amd_libs']])
529      conf.env.AppendUnique(CPPPATH = [env['blas_path']])
530      conf.env.AppendUnique(LIBPATH = [env['blas_lib_path']])
531      conf.env.AppendUnique(LIBS    = [env['blas_libs']])
532      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['umf_lib_path']) # The wrapper script needs to find these libs
533      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['amd_lib_path']) # The wrapper script needs to find these libs
534      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['blas_lib_path'])    # The wrapper script needs to find these libs
535      #ensure that our path entries remain at the front
536      conf.env.PrependENVPath('PYTHONPATH', prefix)
537      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
538    
539    if env['useumfpack'] and not conf.CheckFunc('umfpack_di_symbolic'): env['useumfpack'] = 0
540    if env['useumfpack'] and not conf.CheckCHeader('umfpack.h'): env['useumfpack'] = 0
541    # if env['useumfpack'] and not conf.CheckFunc('daxpy'): env['useumfpack'] = 0 # this does not work on shake73?
542    
543    # Add UMFPACK to environment env if it was found
544    if env['useumfpack']:
545      env = conf.Finish()
546      env.Append(CPPDEFINES = ['UMFPACK'])
547    else:
548      conf.Finish()
549    
550    ############ Silo (optional) ###################################
551    
552    if env['usesilo']:
553      conf = Configure(clone_env(env))
554      conf.env.AppendUnique(CPPPATH = [env['silo_path']])
555      conf.env.AppendUnique(LIBPATH = [env['silo_lib_path']])
556      conf.env.AppendUnique(LIBS = [env['silo_libs']])
557      if not conf.CheckCHeader('silo.h'): env['usesilo'] = 0
558      if not conf.CheckFunc('DBMkDir'): env['usesilo'] = 0
559      conf.Finish()
560    
561    # Add the path to Silo to environment env if it was found.
562    # Note that we do not add the libs since they are only needed for the
563    # escriptreader library and tools.
564    if env['usesilo']:
565      env.AppendUnique(CPPPATH = [env['silo_path']])
566      env.AppendUnique(LIBPATH = [env['silo_lib_path']])
567      env.Append(CPPDEFINES = ['HAVE_SILO'])
568    
569    ############ Add the compiler flags ############################
570    
571    # Enable debug by choosing either cc_debug or cc_optim
572    if env['usedebug']:
573      env.Append(CCFLAGS        = env['cc_debug'])
574      env.Append(CCFLAGS        = env['omp_debug'])
575    else:
576      env.Append(CCFLAGS        = env['cc_optim'])
577      env.Append(CCFLAGS        = env['omp_optim'])
578    
579    # Always use cc_flags
580    env.Append(CCFLAGS      = env['cc_flags'])
581    env.Append(LIBS         = [env['omp_libs']])
582    
583     try:  ############ Add some custom builders ##########################
       includes = env['amd_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
584    
585     try:  py_builder = Builder(action = scons_extensions.build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
586        lib_path = env['amd_lib_path']  env.Append(BUILDERS = {'PyCompile' : py_builder});
       env.Append(LIBPATH = [lib_path,])  
    except KeyError:  
       pass  
587    
588     try:  runUnitTest_builder = Builder(action = scons_extensions.runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
589        amd_libs = env['amd_libs']  env.Append(BUILDERS = {'RunUnitTest' : runUnitTest_builder});
       umf_libs+=amd_libs  
    except KeyError:  
       pass  
590    
591  # ============= set TRILINOS (but only with MPI) =====================================  runPyUnitTest_builder = Builder(action = scons_extensions.runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
592  if useMPI:  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
    try:  
       includes = env['trilinos_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
593    
594     try:  epstopdfbuilder = Builder(action = scons_extensions.eps2pdf, suffix=".pdf", src_suffix=".eps", single_source=True)
595        lib_path = env['trilinos_lib_path']  env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
       env.Append(LIBPATH = [lib_path,])  
    except KeyError:  
       pass  
596    
597     try:  ############ MPI (optional) ####################################
598        trilinos_libs = env['trilinos_libs']  if not env['usempi']: env['mpi_flavour']='none'
    except KeyError:  
       trilinos_libs = []  
 else:  
      trilinos_libs = []  
599    
600  # ============= set blas =====================================  # Create a modified environment for MPI programs (identical to env if usempi=no)
601  try:  env_mpi = clone_env(env)
    includes = env['blas_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
602    
603  try:  # Start a new configure environment that reflects what we've already found
604     lib_path = env['blas_lib_path']  conf = Configure(clone_env(env_mpi))
605     env.Append(LIBPATH = [lib_path,])  
606  except KeyError:  if env_mpi['usempi']:
607     pass    VALID_MPIs=[ "MPT", "MPICH", "MPICH2", "OPENMPI", "INTELMPI" ]
608      if not env_mpi['mpi_flavour'] in VALID_MPIs:
609          raise ValueError,"MPI is enabled but mpi_flavour = %s is not a valid key from %s."%( env_mpi['mpi_flavour'],VALID_MPIs)
610      conf.env.AppendUnique(CPPPATH = [env_mpi['mpi_path']])
611      conf.env.AppendUnique(LIBPATH = [env_mpi['mpi_lib_path']])
612      conf.env.AppendUnique(LIBS    = [env_mpi['mpi_libs']])
613      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['mpi_lib_path']) # The wrapper script needs to find these libs
614      #ensure that our path entries remain at the front
615      conf.env.PrependENVPath('PYTHONPATH', prefix)
616      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
617    
618    if env_mpi['usempi'] and not conf.CheckCHeader('mpi.h'): env_mpi['usempi'] = 0
619    # if env_mpi['usempi'] and not conf.CheckFunc('MPI_Init'): env_mpi['usempi'] = 0
620    
621    # Add MPI to environment env_mpi if it was found
622    if env_mpi['usempi']:
623      env_mpi = conf.Finish()
624      env_mpi.Append(CPPDEFINES = ['PASO_MPI', 'MPI_NO_CPPBIND', env_mpi['MPICH_IGNORE_CXX_SEEK']])
625    else:
626      conf.Finish()
627    
628    env['usempi'] = env_mpi['usempi']
629    
630    
631    ############ ParMETIS (optional) ###############################
632    
633    # Start a new configure environment that reflects what we've already found
634    conf = Configure(clone_env(env_mpi))
635    
636    if not env_mpi['usempi']: env_mpi['useparmetis'] = 0
637    
638    if env_mpi['useparmetis']:
639      conf.env.AppendUnique(CPPPATH = [env_mpi['parmetis_path']])
640      conf.env.AppendUnique(LIBPATH = [env_mpi['parmetis_lib_path']])
641      conf.env.AppendUnique(LIBS    = [env_mpi['parmetis_libs']])
642      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['parmetis_lib_path'])    # The wrapper script needs to find these libs
643      #ensure that our path entries remain at the front
644      conf.env.PrependENVPath('PYTHONPATH', prefix)
645      conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
646    
647    if env_mpi['useparmetis'] and not conf.CheckCHeader('parmetis.h'): env_mpi['useparmetis'] = 0
648    if env_mpi['useparmetis'] and not conf.CheckFunc('ParMETIS_V3_PartGeomKway'): env_mpi['useparmetis'] = 0
649    
650    # Add ParMETIS to environment env_mpi if it was found
651    if env_mpi['useparmetis']:
652      env_mpi = conf.Finish()
653      env_mpi.Append(CPPDEFINES = ['USE_PARMETIS'])
654    else:
655      conf.Finish()
656    
657    env['useparmetis'] = env_mpi['useparmetis']
658    
659    ############ Now we switch on Warnings as errors ###############
660    
661    #this needs to be done after configuration because the scons test files have warnings in them
662    
663    if ((fatalwarning != "") and (env['usewarnings'])):
664      env.Append(CCFLAGS        = fatalwarning)
665      env_mpi.Append(CCFLAGS        = fatalwarning)
666    
667    ############ Summarize our environment #########################
668    
669    print ""
670    print "Summary of configuration (see ./config.log for information)"
671    print " Using python libraries"
672    print " Using numpy"
673    print " Using boost"
674    if env['usenetcdf']: print "    Using NetCDF"
675    else: print "   Not using NetCDF"
676    if env['usevtk']: print "   Using VTK"
677    else: print "   Not using VTK"
678    if env['usemkl']: print "   Using MKL"
679    else: print "   Not using MKL"
680    if env['useumfpack']: print "   Using UMFPACK"
681    else: print "   Not using UMFPACK"
682    if env['usesilo']: print "  Using Silo"
683    else: print "   Not using Silo"
684    if env['useopenmp']: print "    Using OpenMP"
685    else: print "   Not using OpenMP"
686    if env['usempi']: print "   Using MPI (flavour = %s)"%env['mpi_flavour']
687    else: print "   Not using MPI"
688    if env['useparmetis']: print "  Using ParMETIS"
689    else: print "   Not using ParMETIS (requires MPI)"
690    if env['usepapi']: print "  Using PAPI"
691    else: print "   Not using PAPI"
692    if env['usedebug']: print " Compiling for debug"
693    else: print "   Not compiling for debug"
694    print " Installing in", prefix
695    if ((fatalwarning != "") and (env['usewarnings'])): print " Treating warnings as errors"
696    else: print "   Not treating warnings as errors"
697    print ""
698    
699    ############ Delete option-dependent files #####################
700    
701    Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.debug")))
702    Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.mpi")))
703    Execute(Delete(os.path.join(env['libinstall'],"Compiled.with.openmp")))
704    Execute(Delete(os.path.join(env['libinstall'],"pyversion")))
705    Execute(Delete(os.path.join(env['libinstall'],"buildvars")))
706    if not env['usempi']: Execute(Delete(os.path.join(env['libinstall'],"pythonMPI")))
707    
708    
709    ############ Build the subdirectories ##########################
710    
711    from grouptest import *
712    
713    TestGroups=[]
714    
715    Export(
716      ["env",
717       "env_mpi",
718       "clone_env",
719       "IS_WINDOWS_PLATFORM",
720       "TestGroups"
721       ]
722      )
723    
724  try:  env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)
725     blas_libs = env['blas_libs']  env.SConscript(dirs = ['tools/libescriptreader/src'], build_dir='build/$PLATFORM/tools/libescriptreader', duplicate=0)
726  except KeyError:  env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)
727     blas_libs = [ ]  env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)
728    env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)
729    env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)
730    env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)
731    env.SConscript(dirs = ['doc'], build_dir='build/$PLATFORM/doc', duplicate=0)
732    env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)
733    env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)
734    env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)
735    env.SConscript(dirs = ['scripts'], build_dir='build/$PLATFORM/scripts', duplicate=0)
736    env.SConscript(dirs = ['paso/profiling'], build_dir='build/$PLATFORM/paso/profiling', duplicate=0)
737    
 # ========== netcdf ====================================  
 try:  
    useNetCDF = env['useNetCDF']  
 except KeyError:  
    useNetCDF = 'yes'  
    pass  
       
 if useNetCDF == 'yes':  
    try:  
       netCDF_libs = env['netCDF_libs']  
    except KeyError:  
       pass  
738    
739     env.Append(LIBS = netCDF_libs)  ############ Remember what optimizations we used ###############
    env.Append(CPPDEFINES = [ 'USE_NETCDF' ])  
    try:  
       includes = env['netCDF_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
740    
741     try:  remember_list = []
       lib_path = env['netCDF_lib_path']  
       env.Append(LIBPATH = [ lib_path, ])  
       env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
       if IS_WINDOWS_PLATFORM :  
          env.PrependENVPath('PATH', lib_path)  
    except KeyError:  
       pass  
 else:  
    print "Warning: Installation is not configured with netCDF. Some I/O function may not be available."  
    netCDF_libs=[ ]  
742    
743  # ====================== boost ======================================  if env['usedebug']:
744  try:    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.debug"), None, Touch('$TARGET'))
    includes = env['boost_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['boost_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
    env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    if IS_WINDOWS_PLATFORM :  
       env.PrependENVPath('PATH', lib_path)  
 except KeyError:  
    pass  
 try:  
    boost_lib = env['boost_lib']  
 except KeyError:  
    boost_lib = None  
 # ====================== python ======================================  
 try:  
    includes = env['python_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['python_lib_path']  
    env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    python_lib = env['python_lib']  
 except KeyError:  
    python_lib = None  
 # =============== documentation =======================================  
 try:  
    doxygen_path = env['doxygen_path']  
 except KeyError:  
    doxygen_path = None  
 try:  
    epydoc_path = env['epydoc_path']  
 except KeyError:  
    epydoc_path = None  
 # =============== ParMETIS =======================================  
 try:  
    parmetis_path = env['parmetis_path']  
    parmetis_lib_path = env['parmetis_lib_path']  
    parmetis_lib = env['parmetis_lib']  
 except KeyError:  
    parmetis_path = ''  
    parmetis_lib_path = ''  
    parmetis_lib = ''  
   
 if useMPI and os.path.isdir(parmetis_lib_path):  
    env.Append(CPPDEFINES = [ 'PARMETIS' ])  
    env.Append(CXXDEFINES = [ 'PARMETIS' ])  
    env.Append(CPPPATH = [parmetis_path])  
    env.Append(LIBPATH = [parmetis_lib_path])  
    env.Append(LIBS = parmetis_lib)  
 # =============== PAPI =======================================  
 try:  
    includes = env['papi_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['papi_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    papi_libs = env['papi_libs']  
 except KeyError:  
    papi_libs = None  
 # ============= set mpi =====================================  
 if useMPI:  
    env.Append(CPPDEFINES=['PASO_MPI', 'MPI_NO_CPPBIND'])  
    try:  
       includes = env['mpi_path']  
       env.Append(CPPPATH = [includes,])  
    except KeyError:  
       pass  
    try:  
       lib_path = env['mpi_lib_path']  
       env.Append(LIBPATH = [lib_path,])  
       env['ENV']['LD_LIBRARY_PATH']+=":"+lib_path  
    except KeyError:  
       pass  
    try:  
       mpi_libs = env['mpi_libs']  
    except KeyError:  
       mpi_libs = []  
745    
746     try:  if env['usempi']:
747        mpi_run = env['mpi_run']    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.mpi"), None, Touch('$TARGET'))
    except KeyError:  
       mpi_run = ''  
748    
749     try:  if env['useopenmp']:
750         mpich_ignore_cxx_seek=env['MPICH_IGNORE_CXX_SEEK']    remember_list += env.Command(os.path.join(env['libinstall'],"Compiled.with.openmp"), None, Touch('$TARGET'))
        env.Append(CPPDEFINES = [ mpich_ignore_cxx_seek ] )  
    except KeyError:  
       pass  
 else:  
   mpi_libs=[]  
   mpi_run = mpi_run_default  
 # =========== zip files ===========================================  
 try:  
    includes = env['papi_path']  
    env.Append(CPPPATH = [includes,])  
 except KeyError:  
    pass  
 try:  
    lib_path = env['papi_lib_path']  
    env.Append(LIBPATH = [lib_path,])  
 except KeyError:  
    pass  
 try:  
    papi_libs = env['papi_libs']  
 except KeyError:  
    papi_libs = None  
 try:  
    papi_instrument_solver = env['papi_instrument_solver']  
 except KeyError:  
    papi_instrument_solver = None  
751    
752    env.Alias('remember_options', remember_list)
753    
 # ============= and some helpers =====================================  
 try:  
    doxygen_path = env['doxygen_path']  
 except KeyError:  
    doxygen_path = None  
 try:  
    epydoc_path = env['epydoc_path']  
 except KeyError:  
    epydoc_path = None  
 try:  
    src_zipfile = env.File(env['src_zipfile'])  
 except KeyError:  
    src_zipfile = None  
 try:  
    test_zipfile = env.File(env['test_zipfile'])  
 except KeyError:  
    test_zipfile = None  
 try:  
    examples_zipfile = env.File(env['examples_zipfile'])  
 except KeyError:  
    examples_zipfile = None  
754    
755  try:  ############### Record python interpreter version ##############
    src_tarfile = env.File(env['src_tarfile'])  
 except KeyError:  
    src_tarfile = None  
 try:  
    test_tarfile = env.File(env['test_tarfile'])  
 except KeyError:  
    test_tarfile = None  
 try:  
    examples_tarfile = env.File(env['examples_tarfile'])  
 except KeyError:  
    examples_tarfile = None  
756    
757  try:  if not IS_WINDOWS_PLATFORM:
758     guide_pdf = env.File(env['guide_pdf'])    versionstring="Python "+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])
759  except KeyError:    os.system("echo "+versionstring+" > "+os.path.join(env['libinstall'],"pyversion"))
    guide_pdf = None  
760    
761  try:  ############## Populate the buildvars file #####################
    guide_html_index = env.File('index.htm',env['guide_html'])  
 except KeyError:  
    guide_html_index = None  
762    
763  try:  buildvars=open(os.path.join(env['libinstall'],'buildvars'),'w')
764     api_epydoc = env.Dir(env['api_epydoc'])  buildvars.write('python='+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+'\n')
 except KeyError:  
    api_epydoc = None  
765    
766  try:  # Find the boost version by extracting it from version.hpp
767     api_doxygen = env.Dir(env['api_doxygen'])  boosthpp=open(os.path.join(env['boost_path'],'boost','version.hpp'))
768  except KeyError:  boostversion='unknown'
769     api_doxygen = None  try:
770        for line in boosthpp:
771            ver=re.match(r'#define BOOST_VERSION (\d+)',line)
772            if ver:
773                boostversion=ver.group(1)
774    except StopIteration:
775        pass
776    buildvars.write("boost="+boostversion+"\n")
777    buildvars.write("svn_revision="+str(global_revision)+"\n")
778    out="usedebug="
779    if env['usedebug']:
780        out+="y"
781    else:
782        out+="n"
783    out+="\nusempi="
784    if env['usempi']:
785        out+="y"
786    else:
787        out+="n"
788    out+="\nuseopenmp="
789    if env['useopenmp']:
790        out+="y"
791    else:
792        out+="n"
793    buildvars.write(out+"\n")
794    buildvars.write("mpi_flavour="+env['mpi_flavour']+'\n')
795    
796    buildvars.close()
797    
798    
799    ############ Targets to build and install libraries ############
800    
801    target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))
802    env.Alias('target_init', [target_init])
803    
804    # The headers have to be installed prior to build in order to satisfy #include <paso/Common.h>
805    env.Alias('build_esysUtils', ['target_install_esysUtils_headers', 'target_esysUtils_a'])
806    env.Alias('install_esysUtils', ['build_esysUtils', 'target_install_esysUtils_a'])
807    
808    env.Alias('build_paso', ['target_install_paso_headers', 'target_paso_a'])
809    env.Alias('install_paso', ['build_paso', 'target_install_paso_a'])
810    
811    env.Alias('build_escript', ['target_install_escript_headers', 'target_escript_so', 'target_escriptcpp_so'])
812    env.Alias('install_escript', ['build_escript', 'target_install_escript_so', 'target_install_escriptcpp_so', 'target_install_escript_py'])
813    
814    env.Alias('build_finley', ['target_install_finley_headers', 'target_finley_so', 'target_finleycpp_so'])
815    env.Alias('install_finley', ['build_finley', 'target_install_finley_so', 'target_install_finleycpp_so', 'target_install_finley_py'])
816    
817    # Now gather all the above into a couple easy targets: build_all and install_all
818    build_all_list = []
819    build_all_list += ['build_esysUtils']
820    build_all_list += ['build_paso']
821    build_all_list += ['build_escript']
822    build_all_list += ['build_finley']
823    if env['usempi']:       build_all_list += ['target_pythonMPI_exe']
824    #if not IS_WINDOWS_PLATFORM:    build_all_list += ['target_escript_wrapper']
825    if env['usesilo']:  build_all_list += ['target_escript2silo']
826    env.Alias('build_all', build_all_list)
827    
828    install_all_list = []
829    install_all_list += ['target_init']
830    install_all_list += ['install_esysUtils']
831    install_all_list += ['install_paso']
832    install_all_list += ['install_escript']
833    install_all_list += ['install_finley']
834    install_all_list += ['target_install_pyvisi_py']
835    install_all_list += ['target_install_modellib_py']
836    install_all_list += ['target_install_pycad_py']
837    if env['usempi']:       install_all_list += ['target_install_pythonMPI_exe']
838    #if not IS_WINDOWS_PLATFORM:    install_all_list += ['target_install_escript_wrapper']
839    if env['usesilo']:  install_all_list += ['target_install_escript2silo']
840    install_all_list += ['remember_options']
841    env.Alias('install_all', install_all_list)
842    
843    # Default target is install
844    env.Default('install_all')
845    
846    ############ Targets to build and run the test suite ###########
847    
848    env.Alias('build_cppunittest', ['target_install_cppunittest_headers', 'target_cppunittest_a'])
849    env.Alias('install_cppunittest', ['build_cppunittest', 'target_install_cppunittest_a'])
850    env.Alias('run_tests', ['install_all', 'target_install_cppunittest_a'])
851    env.Alias('all_tests', ['install_all', 'target_install_cppunittest_a', 'run_tests', 'py_tests'])
852    env.Alias('build_full',['install_all','build_tests','build_py_tests'])
853    
854  try:  ############ Targets to build the documentation ################
    svn_pipe = os.popen("svnversion -n .")  
    global_revision = svn_pipe.readlines()  
    svn_pipe.close()  
    global_revision = re.sub(":.*", "", global_revision[0])  
    global_revision = re.sub("[^0-9]", "", global_revision)  
 except:  
    global_revision="-1"  
    print "Warning: unable to recover global revsion number."  
 if global_revision == "": global_revision="0"  
 print "Revision number is %s."%global_revision  
 env.Append(CPPDEFINES = "SVN_VERSION="+global_revision)  
   
 # Python install - esys __init__.py  
 init_target = env.Command(pyinstall+'/__init__.py', None, Touch('$TARGET'))  
   
 # FIXME: exinstall and friends related to examples are not working.  
 build_target = env.Alias('build',[libinstall,incinstall,pyinstall,init_target])  
   
 env.Default(build_target)  
   
 # Zipgets  
 env.Alias('release_src',[ src_zipfile, src_tarfile ])  
 env.Alias('release_tests',[ test_zipfile, test_tarfile])  
 env.Alias('release_examples',[ examples_zipfile, examples_tarfile])  
 env.Alias('examples_zipfile',examples_zipfile)  
 env.Alias('examples_tarfile',examples_tarfile)  
 env.Alias('api_epydoc',api_epydoc)  
 env.Alias('api_doxygen',api_doxygen)  
 env.Alias('guide_html_index',guide_html_index)  
 env.Alias('guide_pdf', guide_pdf)  
 env.Alias('docs',[ 'release_examples', 'guide_pdf', api_epydoc, api_doxygen, guide_html_index])  
 env.Alias('release', ['release_src', 'release_tests', 'docs'])  
   
 env.Alias('build_tests',build_target)    # target to build all C++ tests  
 env.Alias('build_py_tests',build_target) # target to build all python tests  
 env.Alias('build_all_tests', [ 'build_tests', 'build_py_tests' ] ) # target to build all python tests  
 env.Alias('run_tests', 'build_tests')   # target to run all C++ test  
 env.Alias('py_tests', 'build_py_tests') # taget to run all released python tests  
 env.Alias('all_tests', ['run_tests', 'py_tests']) # target to run all C++ and released python tests  
   
   
 # Allow sconscripts to see the env  
 Export(["IS_WINDOWS_PLATFORM", "env", "incinstall", "libinstall", "pyinstall", "dodebug", "mkl_libs", "scsl_libs", "umf_libs", "blas_libs", "netCDF_libs", "useNetCDF", "mpi_run",  
     "boost_lib", "python_lib", "doxygen_path", "epydoc_path", "papi_libs",  
         "sys_libs", "test_zipfile", "src_zipfile", "test_tarfile", "src_tarfile", "examples_tarfile", "examples_zipfile", "trilinos_libs", "mpi_libs", "papi_instrument_solver",  
         "guide_pdf", "guide_html_index", "api_epydoc", "api_doxygen", "useMPI" ])  
   
 # End initialisation section  
 # Begin configuration section  
 # adds this file and the scons option directore to the source tar  
 release_srcfiles=[env.File('SConstruct'),env.Dir('lib'),env.Dir('include'),]+[ env.File(x) for x in glob.glob('scons/*.py') ]  
 release_testfiles=[env.File('README_TESTS'),]  
 env.Zip(src_zipfile, release_srcfiles)  
 env.Zip(test_zipfile, release_testfiles)  
 try:  
    env.Tar(src_tarfile, release_srcfiles)  
    env.Tar(test_tarfile, release_testfiles)  
 except AttributeError:  
    pass  
 # Insert new components to be build here  
 # FIXME: might be nice to replace this verbosity with a list of targets and some  
 # FIXME: nifty python to create the lengthy but very similar env.Sconscript lines  
 # Third Party libraries  
 env.SConscript(dirs = ['tools/CppUnitTest/src'], build_dir='build/$PLATFORM/tools/CppUnitTest', duplicate=0)  
 # C/C++ Libraries  
 env.SConscript(dirs = ['esysUtils/src'], build_dir='build/$PLATFORM/esysUtils', duplicate=0)  
 env.SConscript(dirs = ['escript/src'], build_dir='build/$PLATFORM/escript', duplicate=0)  
 env.SConscript(dirs = ['paso/src'], build_dir='build/$PLATFORM/paso', duplicate=0)  
 # bruce is removed for now as it doesn't really do anything  
 # env.SConscript(dirs = ['bruce/src'], build_dir='build/$PLATFORM/bruce', duplicate=0)  
 env.SConscript(dirs = ['finley/src'], build_dir='build/$PLATFORM/finley', duplicate=0)  
 env.SConscript(dirs = ['modellib/py_src'], build_dir='build/$PLATFORM/modellib', duplicate=0)  
 env.SConscript(dirs = ['doc'], build_dir='build/$PLATFORM/doc', duplicate=0)  
 env.SConscript(dirs = ['pyvisi/py_src'], build_dir='build/$PLATFORM/pyvisi', duplicate=0)  
 env.SConscript(dirs = ['pycad/py_src'], build_dir='build/$PLATFORM/pycad', duplicate=0)  
 env.SConscript(dirs = ['pythonMPI/src'], build_dir='build/$PLATFORM/pythonMPI', duplicate=0)  
 #env.SConscript(dirs = ['../test'], build_dir='../test/build', duplicate=0)  
855    
856    env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'guide_pdf', 'guide_html','install_pdf'])
857    
858  syslib_install_target = env.installDirectory(sys_libinstall,libinstall)  if not IS_WINDOWS_PLATFORM:
859  syspy_install_target = env.installDirectory(sys_pyinstall,pyinstall,recursive=True)     try:
860        utest=open("utest.sh","w")
861        build_platform=os.name      #Sometimes Mac python says it is posix
862        if (build_platform=='posix') and platform.system()=="Darwin":
863            build_platform='darwin'
864        utest.write(GroupTest.makeHeader(build_platform))
865        for tests in TestGroups:
866            utest.write(tests.makeString())
867        utest.close()
868        os.chmod("utest.sh",stat.S_IRWXU|stat.S_IRGRP|stat.S_IXGRP|stat.S_IROTH|stat.S_IXOTH)
869        print "utest.sh written"
870       except IOError:
871        print "Error attempting to write unittests file."
872        sys.exit(1)
873    
 install_target = env.Alias("install", env.Flatten([syslib_install_target, syspy_install_target]) )  

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