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revision 3463 by caltinay, Mon Feb 7 02:09:57 2011 UTC revision 5381 by sshaw, Tue Dec 16 00:40:47 2014 UTC
# Line 1  Line 1 
1  ########################################################  ##############################################################################
2  #  #
3  # Copyright (c) 2003-2010 by University of Queensland  # Copyright (c) 2003-2014 by University of Queensland
4  # Earth Systems Science Computational Center (ESSCC)  # http://www.uq.edu.au
 # http://www.uq.edu.au/esscc  
5  #  #
6  # Primary Business: Queensland, Australia  # Primary Business: Queensland, Australia
7  # Licensed under the Open Software License version 3.0  # Licensed under the Open Software License version 3.0
8  # http://www.opensource.org/licenses/osl-3.0.php  # http://www.opensource.org/licenses/osl-3.0.php
9  #  #
10  ########################################################  # Development until 2012 by Earth Systems Science Computational Center (ESSCC)
11    # Development 2012-2013 by School of Earth Sciences
12    # Development from 2014 by Centre for Geoscience Computing (GeoComp)
13    #
14    ##############################################################################
15    
16  EnsureSConsVersion(0,98,1)  EnsureSConsVersion(0,98,1)
17  EnsurePythonVersion(2,5)  EnsurePythonVersion(2,5)
18    
19  import sys, os, platform, re  import atexit, sys, os, platform, re
20  from distutils import sysconfig  from distutils import sysconfig
21    from dependencies import *
22  from site_init import *  from site_init import *
23    
24  # Version number to check for in options file. Increment when new features are  # Version number to check for in options file. Increment when new features are
25  # added or existing options changed.  # added or existing options changed.
26  REQUIRED_OPTS_VERSION=200  REQUIRED_OPTS_VERSION=202
27    
28  # MS Windows support, many thanks to PH  # MS Windows support, many thanks to PH
29  IS_WINDOWS = (os.name == 'nt')  IS_WINDOWS = (os.name == 'nt')
30    
31    IS_OSX = (os.uname()[0] == 'Darwin')
32    
33  ########################## Determine options file ############################  ########################## Determine options file ############################
34  # 1. command line  # 1. command line
35  # 2. scons/<hostname>_options.py  # 2. scons/<hostname>_options.py
# Line 40  if not options_file: Line 46  if not options_file:
46  if not os.path.isfile(options_file):  if not os.path.isfile(options_file):
47      print("\nWARNING:\nOptions file %s" % options_file)      print("\nWARNING:\nOptions file %s" % options_file)
48      print("not found! Default options will be used which is most likely suboptimal.")      print("not found! Default options will be used which is most likely suboptimal.")
49      print("It is recommended that you copy one of the TEMPLATE files in the scons/")      print("We recommend that you copy the most relavent options file in the scons/os/")
50      print("subdirectory and customize it to your needs.\n")      print("subdirectory and customize it to your needs.\n")
51      options_file = None      options_file = None
52    
53  ############################### Build options ################################  ############################### Build options ################################
54    
55  default_prefix='/usr'  default_prefix='/usr'
56  mpi_flavours=('none', 'MPT', 'MPICH', 'MPICH2', 'OPENMPI', 'INTELMPI')  mpi_flavours=('no', 'none', 'MPT', 'MPICH', 'MPICH2', 'OPENMPI', 'INTELMPI')
57  lapack_flavours=('none', 'clapack', 'mkl')  lapack_flavours=('none', 'clapack', 'mkl')
58    
59  vars = Variables(options_file, ARGUMENTS)  vars = Variables(options_file, ARGUMENTS)
# Line 57  vars.AddVariables( Line 63  vars.AddVariables(
63    PathVariable('build_dir', 'Top-level build directory', Dir('#/build').abspath, PathVariable.PathIsDirCreate),    PathVariable('build_dir', 'Top-level build directory', Dir('#/build').abspath, PathVariable.PathIsDirCreate),
64    BoolVariable('verbose', 'Output full compile/link lines', False),    BoolVariable('verbose', 'Output full compile/link lines', False),
65  # Compiler/Linker options  # Compiler/Linker options
   ('cc', 'Path to C compiler', 'default'),  
66    ('cxx', 'Path to C++ compiler', 'default'),    ('cxx', 'Path to C++ compiler', 'default'),
67    ('cc_flags', 'Base C/C++ compiler flags', 'default'),    ('cc_flags', 'Base C++ compiler flags', 'default'),
68    ('cc_optim', 'Additional C/C++ flags for a non-debug build', 'default'),    ('cc_optim', 'Additional C++ flags for a non-debug build', 'default'),
69    ('cc_debug', 'Additional C/C++ flags for a debug build', 'default'),    ('cc_debug', 'Additional C++ flags for a debug build', 'default'),
   ('cc_extra', 'Extra C compiler flags', ''),  
70    ('cxx_extra', 'Extra C++ compiler flags', ''),    ('cxx_extra', 'Extra C++ compiler flags', ''),
71    ('ld_extra', 'Extra linker flags', ''),    ('ld_extra', 'Extra linker flags', ''),
72      ('nvcc', 'Path to CUDA compiler', 'default'),
73      ('nvccflags', 'Base CUDA compiler flags', 'default'),
74    BoolVariable('werror','Treat compiler warnings as errors', True),    BoolVariable('werror','Treat compiler warnings as errors', True),
75    BoolVariable('debug', 'Compile with debug flags', False),    BoolVariable('debug', 'Compile with debug flags', False),
76    BoolVariable('openmp', 'Compile parallel version using OpenMP', False),    BoolVariable('openmp', 'Compile parallel version using OpenMP', False),
# Line 73  vars.AddVariables( Line 79  vars.AddVariables(
79  # Mandatory libraries  # Mandatory libraries
80    ('boost_prefix', 'Prefix/Paths of boost installation', default_prefix),    ('boost_prefix', 'Prefix/Paths of boost installation', default_prefix),
81    ('boost_libs', 'Boost libraries to link with', ['boost_python-mt']),    ('boost_libs', 'Boost libraries to link with', ['boost_python-mt']),
82    # Mandatory for tests
83      ('cppunit_prefix', 'Prefix/Paths of CppUnit installation', default_prefix),
84      ('cppunit_libs', 'CppUnit libraries to link with', ['cppunit']),
85  # Optional libraries and options  # Optional libraries and options
86    EnumVariable('mpi', 'Compile parallel version using MPI flavour', 'none', allowed_values=mpi_flavours),    EnumVariable('mpi', 'Compile parallel version using MPI flavour', 'none', allowed_values=mpi_flavours),
87    ('mpi_prefix', 'Prefix/Paths of MPI installation', default_prefix),    ('mpi_prefix', 'Prefix/Paths of MPI installation', default_prefix),
88    ('mpi_libs', 'MPI shared libraries to link with', ['mpi']),    ('mpi_libs', 'MPI shared libraries to link with', ['mpi']),
89      BoolVariable('cuda', 'Enable GPU code with CUDA (requires thrust)', False),
90      ('thrust_prefix', 'Prefix/Paths to NVidia thrust installation', default_prefix),
91    BoolVariable('netcdf', 'Enable netCDF file support', False),    BoolVariable('netcdf', 'Enable netCDF file support', False),
92    ('netcdf_prefix', 'Prefix/Paths of netCDF installation', default_prefix),    ('netcdf_prefix', 'Prefix/Paths of netCDF installation', default_prefix),
93    ('netcdf_libs', 'netCDF libraries to link with', ['netcdf_c++', 'netcdf']),    ('netcdf_libs', 'netCDF libraries to link with', ['netcdf_c++', 'netcdf']),
94    BoolVariable('parmetis', 'Enable ParMETIS (requires MPI)', False),    BoolVariable('parmetis', 'Enable ParMETIS (requires MPI)', False),
95    ('parmetis_prefix', 'Prefix/Paths of ParMETIS installation', default_prefix),    ('parmetis_prefix', 'Prefix/Paths of ParMETIS installation', default_prefix),
96    ('parmetis_libs', 'ParMETIS libraries to link with', ['parmetis', 'metis']),    ('parmetis_libs', 'ParMETIS libraries to link with', ['parmetis', 'metis']),
   BoolVariable('papi', 'Enable PAPI', False),  
   ('papi_prefix', 'Prefix/Paths to PAPI installation', default_prefix),  
   ('papi_libs', 'PAPI libraries to link with', ['papi']),  
   BoolVariable('papi_instrument_solver', 'Use PAPI to instrument each iteration of the solver', False),  
97    BoolVariable('mkl', 'Enable the Math Kernel Library', False),    BoolVariable('mkl', 'Enable the Math Kernel Library', False),
98    ('mkl_prefix', 'Prefix/Paths to MKL installation', default_prefix),    ('mkl_prefix', 'Prefix/Paths to MKL installation', default_prefix),
99    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver','mkl_em64t','guide','pthread']),    ('mkl_libs', 'MKL libraries to link with', ['mkl_solver','mkl_em64t','guide','pthread']),
100    BoolVariable('umfpack', 'Enable UMFPACK', False),    BoolVariable('umfpack', 'Enable UMFPACK', False),
101    ('umfpack_prefix', 'Prefix/Paths to UMFPACK installation', default_prefix),    ('umfpack_prefix', 'Prefix/Paths to UMFPACK installation', default_prefix),
102    ('umfpack_libs', 'UMFPACK libraries to link with', ['umfpack']),    ('umfpack_libs', 'UMFPACK libraries to link with', ['umfpack']),
103      BoolVariable('boomeramg', 'Enable BoomerAMG', False),
104      ('boomeramg_prefix', 'Prefix/Paths to BoomerAMG installation', default_prefix),
105      ('boomeramg_libs', 'BoomerAMG libraries to link with', ['boomeramg']),
106    EnumVariable('lapack', 'Set LAPACK flavour', 'none', allowed_values=lapack_flavours),    EnumVariable('lapack', 'Set LAPACK flavour', 'none', allowed_values=lapack_flavours),
107    ('lapack_prefix', 'Prefix/Paths to LAPACK installation', default_prefix),    ('lapack_prefix', 'Prefix/Paths to LAPACK installation', default_prefix),
108    ('lapack_libs', 'LAPACK libraries to link with', []),    ('lapack_libs', 'LAPACK libraries to link with', []),
# Line 102  vars.AddVariables( Line 112  vars.AddVariables(
112    BoolVariable('visit', 'Enable the VisIt simulation interface', False),    BoolVariable('visit', 'Enable the VisIt simulation interface', False),
113    ('visit_prefix', 'Prefix/Paths to VisIt installation', default_prefix),    ('visit_prefix', 'Prefix/Paths to VisIt installation', default_prefix),
114    ('visit_libs', 'VisIt libraries to link with', ['simV2']),    ('visit_libs', 'VisIt libraries to link with', ['simV2']),
115    BoolVariable('pyvisi', 'Enable pyvisi (deprecated, requires VTK module)', False),    ListVariable('domains', 'Which domains to build', 'all',\
116                   ['dudley','finley','ripley','speckley']),
117  # Advanced settings  # Advanced settings
118      ('launcher', 'Launcher command (e.g. mpirun)', 'default'),
119      ('prelaunch', 'Command to execute before launcher (e.g. mpdboot)', 'default'),
120      ('postlaunch', 'Command to execute after launcher (e.g. mpdexit)', 'default'),
121    #dudley_assemble_flags = -funroll-loops      to actually do something    #dudley_assemble_flags = -funroll-loops      to actually do something
122    ('dudley_assemble_flags', 'compiler flags for some dudley optimisations', ''),    ('dudley_assemble_flags', 'compiler flags for some dudley optimisations', ''),
123    # To enable passing function pointers through python    # To enable passing function pointers through python
124    BoolVariable('iknowwhatimdoing', 'Allow non-standard C', False),    BoolVariable('iknowwhatimdoing', 'Allow non-standard C', False),
125    # An option for specifying the compiler tools (see windows branch)    # An option for specifying the compiler tools
126    ('tools_names', 'Compiler tools to use', ['default']),    ('tools_names', 'Compiler tools to use', ['default']),
127    ('env_export', 'Environment variables to be passed to tools',[]),    ('env_export', 'Environment variables to be passed to tools',[]),
128    EnumVariable('forcelazy', 'For testing use only - set the default value for autolazy', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),    EnumVariable('forcelazy', 'For testing use only - set the default value for autolazy', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
129    EnumVariable('forcecollres', 'For testing use only - set the default value for force resolving collective ops', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),    EnumVariable('forcecollres', 'For testing use only - set the default value for force resolving collective ops', 'leave_alone', allowed_values=('leave_alone', 'on', 'off')),
130    # finer control over library building, intel aggressive global optimisation    ('build_shared', 'Build dynamic libraries only', False),
   # works with dynamic libraries on windows.  
   ('share_esysutils', 'Build a dynamic esysUtils library', False),  
   ('share_paso', 'Build a dynamic paso library', False),  
131    ('sys_libs', 'Extra libraries to link with', []),    ('sys_libs', 'Extra libraries to link with', []),
132    ('escript_opts_version', 'Version of options file (do not specify on command line)'),    ('escript_opts_version', 'Version of options file (do not specify on command line)'),
133      ('SVN_VERSION', 'Do not use from options file', -2),
134      ('pythoncmd', 'which python to compile with','python'),
135      ('usepython3', 'Is this a python3 build? (experimental)', False),
136      ('pythonlibname', 'Name of the python library to link. (This is found automatically for python2.X.)', ''),
137      ('pythonlibpath', 'Path to the python library. (You should not need to set this unless your python has moved)',''),
138      ('pythonincpath','Path to python include files. (You should not need to set this unless your python has moved',''),
139      BoolVariable('longindices', 'use long indices (for very large matrices)', False),
140      BoolVariable('BADPYTHONMACROS','Extra \#include to get around a python bug.', True),
141      BoolVariable('compressed_files','Enables reading from compressed binary files', True),
142      ('compression_libs', 'Compression libraries to link with', ['boost_iostreams']),
143      BoolVariable('papi', 'Enable PAPI', False),
144      ('papi_prefix', 'Prefix/Paths to PAPI installation', default_prefix),
145      ('papi_libs', 'PAPI libraries to link with', ['papi']),
146      BoolVariable('papi_instrument_solver', 'Use PAPI to instrument each iteration of the solver', False)
147  )  )
148    
149  ##################### Create environment and help text #######################  ##################### Create environment and help text #######################
# Line 130  vars.AddVariables( Line 155  vars.AddVariables(
155  # in default locations.  # in default locations.
156  env = Environment(tools = ['default'], options = vars,  env = Environment(tools = ['default'], options = vars,
157                    ENV = {'PATH': os.environ['PATH']})                    ENV = {'PATH': os.environ['PATH']})
158  if env['tools_names'] != 'default':  
159    # set the vars for clang
160    def mkclang(env):
161        env['CXX']='clang++'
162    
163    if env['tools_names'] != ['default']:
164        zz=env['tools_names']
165        if 'clang' in zz:
166            zz.remove('clang')
167            zz.insert(0, mkclang)
168      env = Environment(tools = ['default'] + env['tools_names'], options = vars,      env = Environment(tools = ['default'] + env['tools_names'], options = vars,
169                        ENV = {'PATH' : os.environ['PATH']})                        ENV = {'PATH' : os.environ['PATH']})
170    
# Line 156  if len(vars.UnknownVariables())>0: Line 190  if len(vars.UnknownVariables())>0:
190          print("Unknown option '%s'" % k)          print("Unknown option '%s'" % k)
191      Exit(1)      Exit(1)
192    
193    if env['cuda']:
194        if env['nvcc'] != 'default':
195            env['NVCC'] = env['nvcc']
196        env.Tool('nvcc')
197    
198    if 'dudley' in env['domains']:
199        env['domains'].append('finley')
200    
201    # create dictionary which will be populated with info for buildvars file
202    env['buildvars']={}
203    # create list which will be populated with warnings if there are any
204    env['warnings']=[]
205    
206  #################### Make sure install directories exist #####################  #################### Make sure install directories exist #####################
207    
208  env['BUILD_DIR']=env['build_dir']  env['BUILD_DIR']=Dir(env['build_dir']).abspath
209  prefix=Dir(env['prefix']).abspath  prefix=Dir(env['prefix']).abspath
210    env['buildvars']['prefix']=prefix
211  env['incinstall'] = os.path.join(prefix, 'include')  env['incinstall'] = os.path.join(prefix, 'include')
212  env['bininstall'] = os.path.join(prefix, 'bin')  env['bininstall'] = os.path.join(prefix, 'bin')
213  env['libinstall'] = os.path.join(prefix, 'lib')  env['libinstall'] = os.path.join(prefix, 'lib')
# Line 176  env.Append(LIBPATH = [env['libinstall']] Line 224  env.Append(LIBPATH = [env['libinstall']]
224    
225  ################# Fill in compiler options if not set above ##################  ################# Fill in compiler options if not set above ##################
226    
 if env['cc'] != 'default': env['CC']=env['cc']  
227  if env['cxx'] != 'default': env['CXX']=env['cxx']  if env['cxx'] != 'default': env['CXX']=env['cxx']
228    
229  # version >=9 of intel C++ compiler requires use of icpc to link in C++  # version >=9 of intel C++ compiler requires use of icpc to link in C++
# Line 194  fatalwarning = '' # switch to turn warni Line 241  fatalwarning = '' # switch to turn warni
241  sysheaderopt = '' # how to indicate that a header is a system header  sysheaderopt = '' # how to indicate that a header is a system header
242    
243  # env['CC'] might be a full path  # env['CC'] might be a full path
244  cc_name=os.path.basename(env['CC'])  cc_name=os.path.basename(env['CXX'])
245    
246  if cc_name == 'icc':  if cc_name == 'icpc':
247      # Intel compiler      # Intel compiler
248      cc_flags    = "-std=c99 -fPIC -wd161 -w1 -vec-report0 -DBLOCKTIMER -DCORE_ID1"      # #1875: offsetof applied to non-POD types is nonstandard (in boost)
249      cc_optim    = "-O3 -ftz -IPF_ftlacc- -IPF_fma -fno-alias -ip"      # removed -std=c99 because icpc doesn't like it and we aren't using c anymore
250        cc_flags    = "-fPIC -w2 -wd1875 -Wno-unknown-pragmas"
251        cc_optim    = "-O3 -ftz -fno-alias -inline-level=2 -ipo -xHost"
252      cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"      cc_debug    = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"
253      omp_flags   = "-openmp -openmp_report0"      omp_flags   = "-openmp"
254      omp_ldflags = "-openmp -openmp_report0 -lguide -lpthread"      omp_ldflags = "-openmp -openmp_report=1"
255      fatalwarning = "-Werror"      fatalwarning = "-Werror"
256  elif cc_name[:3] == 'gcc':  elif cc_name[:3] == 'g++':
257      # GNU C on any system      # GNU C++ on any system
258      cc_flags     = "-pedantic -Wall -fPIC -ffast-math -Wno-unknown-pragmas -DBLOCKTIMER  -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"      # note that -ffast-math is not used because it breaks isnan(),
259        # see mantis #691
260        cc_flags     = "-pedantic -Wall -fPIC -Wno-unknown-pragmas -Wno-sign-compare -Wno-system-headers -Wno-long-long -Wno-strict-aliasing -finline-functions"
261      cc_optim     = "-O3"      cc_optim     = "-O3"
262      cc_debug     = "-g -O0 -DDOASSERT -DDOPROF -DBOUNDS_CHECK"      #max-vartrack-size: avoid vartrack limit being exceeded with escriptcpp.cpp
263        cc_debug     = "-g3 -O0 -D_GLIBCXX_DEBUG -DDOASSERT -DDOPROF -DBOUNDS_CHECK --param=max-vartrack-size=100000000"
264      omp_flags    = "-fopenmp"      omp_flags    = "-fopenmp"
265      omp_ldflags  = "-fopenmp"      omp_ldflags  = "-fopenmp"
266      fatalwarning = "-Werror"      fatalwarning = "-Werror"
# Line 227  elif cc_name == 'icl': Line 279  elif cc_name == 'icl':
279      omp_flags    = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'      omp_flags    = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
280      omp_ldflags  = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'      omp_ldflags  = '/Qvec-report0 /Qopenmp /Qopenmp-report0 /Qparallel'
281    
282    env['sysheaderopt']=sysheaderopt
283    
284  # set defaults if not otherwise specified  # set defaults if not otherwise specified
285  if env['cc_flags']    == 'default': env['cc_flags'] = cc_flags  if env['cc_flags']    == 'default': env['cc_flags'] = cc_flags
286  if env['cc_optim']    == 'default': env['cc_optim'] = cc_optim  if env['cc_optim']    == 'default': env['cc_optim'] = cc_optim
287  if env['cc_debug']    == 'default': env['cc_debug'] = cc_debug  if env['cc_debug']    == 'default': env['cc_debug'] = cc_debug
288  if env['omp_flags']   == 'default': env['omp_flags'] = omp_flags  if env['omp_flags']   == 'default': env['omp_flags'] = omp_flags
289  if env['omp_ldflags'] == 'default': env['omp_ldflags'] = omp_ldflags  if env['omp_ldflags'] == 'default': env['omp_ldflags'] = omp_ldflags
 if env['cc_extra']  != '': env.Append(CFLAGS = env['cc_extra'])  
290  if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])  if env['cxx_extra'] != '': env.Append(CXXFLAGS = env['cxx_extra'])
291  if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])  if env['ld_extra']  != '': env.Append(LINKFLAGS = env['ld_extra'])
292    
293    if env['nvccflags'] != 'default':
294        env['NVCCFLAGS'] = env['nvccflags']
295        env['SHNVCCFLAGS'] = env['nvccflags'] + ' -shared'
296    
297    if env['BADPYTHONMACROS']:
298        env.Append(CPPDEFINES = ['BADPYTHONMACROS'])
299    
300    if env['longindices']:
301        env.Append(CPPDEFINES = ['ESYS_INDEXTYPE_LONG'])
302    
303    if env['usepython3']:
304        env.Append(CPPDEFINES=['ESPYTHON3'])
305    
306  # set up the autolazy values  # set up the autolazy values
307  if env['forcelazy'] == 'on':  if env['forcelazy'] == 'on':
308      env.Append(CPPDEFINES=['FAUTOLAZYON'])      env.Append(CPPDEFINES=['FAUTOLAZYON'])
# Line 255  if env['iknowwhatimdoing']: Line 321  if env['iknowwhatimdoing']:
321    
322  # Disable OpenMP if no flags provided  # Disable OpenMP if no flags provided
323  if env['openmp'] and env['omp_flags'] == '':  if env['openmp'] and env['omp_flags'] == '':
324     print("OpenMP requested but no flags provided - disabling OpenMP!")     env['warnings'].append("OpenMP requested but no flags provided - disabling OpenMP!")
325     env['openmp'] = False     env['openmp'] = False
326    
327  if env['openmp']:  if env['openmp']:
# Line 265  else: Line 331  else:
331      env['omp_flags']=''      env['omp_flags']=''
332      env['omp_ldflags']=''      env['omp_ldflags']=''
333    
334    env['buildvars']['openmp']=int(env['openmp'])
335    
336  # add debug/non-debug compiler flags  # add debug/non-debug compiler flags
337    env['buildvars']['debug']=int(env['debug'])
338  if env['debug']:  if env['debug']:
339      env.Append(CCFLAGS = env['cc_debug'])      env.Append(CCFLAGS = env['cc_debug'])
340  else:  else:
# Line 277  env.Append(CCFLAGS = env['cc_flags']) Line 346  env.Append(CCFLAGS = env['cc_flags'])
346  # add system libraries  # add system libraries
347  env.AppendUnique(LIBS = env['sys_libs'])  env.AppendUnique(LIBS = env['sys_libs'])
348    
349  # Get the global Subversion revision number for the getVersion() method  # set defaults for launchers if not otherwise specified
350  try:  if env['prelaunch'] == 'default':
351        if env['mpi'] == 'INTELMPI' and env['openmp']:
352            env['prelaunch'] = "export I_MPI_PIN_DOMAIN=omp"
353        elif env['mpi'] == 'OPENMPI':
354            # transform comma-separated list to '-x a -x b -x c ...'
355            env['prelaunch'] = "EE=$(echo %e|sed -e 's/,/ -x /g')"
356        elif env['mpi'] == 'MPT':
357            env['prelaunch'] = "export MPI_NUM_MEMORY_REGIONS=0"
358        elif env['mpi'] == 'MPICH2':
359            env['prelaunch'] = "mpdboot -n %n -r ssh -f %f"
360        else:
361            env['prelaunch'] = ""
362    
363    if env['launcher'] == 'default':
364        if env['mpi'] == 'INTELMPI':
365            env['launcher'] = "mpirun -hostfile %f -n %N -ppn %p %b"
366        elif env['mpi'] == 'OPENMPI':
367            env['launcher'] = "mpirun --gmca mpi_warn_on_fork 0 -x ${EE} --host %h -bynode -bind-to-core --cpus-per-rank %t -np %N %b"
368        elif env['mpi'] == 'MPT':
369            env['launcher'] = "mpirun %h -np %p %b"
370        elif env['mpi'] == 'MPICH':
371            env['launcher'] = "mpirun -machinefile %f -np %N %b"
372        elif env['mpi'] == 'MPICH2':
373            env['launcher'] = "mpiexec -genvlist %e -np %N %b"
374        else:
375            env['launcher'] = "%b"
376    
377    if env['postlaunch'] == 'default':
378        if env['mpi'] == 'MPICH2':
379            env['postlaunch'] = "mpdallexit"
380        else:
381            env['postlaunch'] = ""
382    
383    # determine svn revision
384    global_revision=ARGUMENTS.get('SVN_VERSION', None)
385    if global_revision:
386        global_revision = re.sub(':.*', '', global_revision)
387        global_revision = re.sub('[^0-9]', '', global_revision)
388        if global_revision == '': global_revision='-2'
389    else:
390      # Get the global Subversion revision number for the getVersion() method
391      try:
392      global_revision = os.popen('svnversion -n .').read()      global_revision = os.popen('svnversion -n .').read()
393      global_revision = re.sub(':.*', '', global_revision)      global_revision = re.sub(':.*', '', global_revision)
394      global_revision = re.sub('[^0-9]', '', global_revision)      global_revision = re.sub('[^0-9]', '', global_revision)
395      if global_revision == '': global_revision='-2'      if global_revision == '': global_revision='-2'
396  except:    except:
397      global_revision = '-1'      global_revision = '-1'
398  env['svn_revision']=global_revision  env['svn_revision']=global_revision
399    env['buildvars']['svn_revision']=global_revision
400  env.Append(CPPDEFINES=['SVN_VERSION='+global_revision])  env.Append(CPPDEFINES=['SVN_VERSION='+global_revision])
401    
402  if IS_WINDOWS:  if IS_WINDOWS:
403      if not env['share_esysutils']:      if not env['build_shared']:
404          env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])          env.Append(CPPDEFINES = ['ESYSUTILS_STATIC_LIB'])
     if not env['share_paso']:  
405          env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])          env.Append(CPPDEFINES = ['PASO_STATIC_LIB'])
406    
407    env['IS_WINDOWS']=IS_WINDOWS
408    
409  ###################### Copy required environment vars ########################  ###################### Copy required environment vars ########################
410    
411  # Windows doesn't use LD_LIBRARY_PATH but PATH instead  # Windows doesn't use LD_LIBRARY_PATH but PATH instead
# Line 303  if IS_WINDOWS: Line 415  if IS_WINDOWS:
415  else:  else:
416      LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'      LD_LIBRARY_PATH_KEY='LD_LIBRARY_PATH'
417    
418    env['LD_LIBRARY_PATH_KEY']=LD_LIBRARY_PATH_KEY
419    
420  # the following env variables are exported for the unit tests  # the following env variables are exported for the unit tests
421    
422  for key in 'OMP_NUM_THREADS', 'ESCRIPT_NUM_PROCS', 'ESCRIPT_NUM_NODES':  for key in 'OMP_NUM_THREADS', 'ESCRIPT_NUM_PROCS', 'ESCRIPT_NUM_NODES':
423      try:      try:
424          env['ENV'][key] = os.environ[key]          env['ENV'][key] = os.environ[key]
425      except KeyError:      except KeyError:
426          env['ENV'][key] = 1          env['ENV'][key] = '1'
427    
428  env_export=env['env_export']  env_export=env['env_export']
429  env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME'])  env_export.extend(['ESCRIPT_NUM_THREADS','ESCRIPT_HOSTFILE','DISPLAY','XAUTHORITY','PATH','HOME','KMP_MONITOR_STACKSIZE','TMPDIR','TEMP','TMP','LD_PRELOAD'])
430    
431  for key in set(env_export):  for key in set(env_export):
432      try:      try:
# Line 325  try: Line 439  try:
439  except KeyError:  except KeyError:
440      pass      pass
441    
442    if IS_OSX:
443      try:
444        env.PrependENVPath('DYLD_LIBRARY_PATH', os.environ['DYLD_LIBRARY_PATH'])
445      except KeyError:
446        pass
447    
448    
449  # these shouldn't be needed  # these shouldn't be needed
450  #for key in 'C_INCLUDE_PATH','CPLUS_INCLUDE_PATH','LIBRARY_PATH':  #for key in 'C_INCLUDE_PATH','CPLUS_INCLUDE_PATH','LIBRARY_PATH':
451  #    try:  #    try:
# Line 339  except KeyError: Line 460  except KeyError:
460    
461  ######################## Add some custom builders ############################  ######################## Add some custom builders ############################
462    
463  py_builder = Builder(action = build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)  if env['pythoncmd']=='python':
464        py_builder = Builder(action = build_py, suffix = '.pyc', src_suffix = '.py', single_source=True)
465    else:
466        py_builder = Builder(action = env['pythoncmd']+" scripts/py_comp.py $SOURCE $TARGET", suffix = '.pyc', src_suffix = '.py', single_source=True)
467  env.Append(BUILDERS = {'PyCompile' : py_builder});  env.Append(BUILDERS = {'PyCompile' : py_builder});
468    
469  runUnitTest_builder = Builder(action = runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)  runUnitTest_builder = Builder(action = runUnitTest, suffix = '.passed', src_suffix=env['PROGSUFFIX'], single_source=True)
# Line 348  env.Append(BUILDERS = {'RunUnitTest' : r Line 472  env.Append(BUILDERS = {'RunUnitTest' : r
472  runPyUnitTest_builder = Builder(action = runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)  runPyUnitTest_builder = Builder(action = runPyUnitTest, suffix = '.passed', src_suffic='.py', single_source=True)
473  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});  env.Append(BUILDERS = {'RunPyUnitTest' : runPyUnitTest_builder});
474    
475    runPyExample_builder = Builder(action = runPyExample, suffix = '.passed', src_suffic='.py', single_source=True)
476    env.Append(BUILDERS = {'RunPyExample' : runPyExample_builder});
477    
478  epstopdfbuilder = Builder(action = eps2pdf, suffix='.pdf', src_suffix='.eps', single_source=True)  epstopdfbuilder = Builder(action = eps2pdf, suffix='.pdf', src_suffix='.eps', single_source=True)
479  env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});  env.Append(BUILDERS = {'EpsToPDF' : epstopdfbuilder});
480    
481  ############################ Dependency checks ###############################  ############################ Dependency checks ###############################
482    
483  # Create a Configure() environment to check for compilers and python  ######## Compiler
484  conf = Configure(env.Clone())  env=checkCompiler(env)
   
 ######## Test that the compilers work  
   
 if 'CheckCC' in dir(conf): # exists since scons 1.1.0  
     if not conf.CheckCC():  
         print("Cannot run C compiler '%s' (check config.log)" % (env['CC']))  
         Exit(1)  
     if not conf.CheckCXX():  
         print("Cannot run C++ compiler '%s' (check config.log)" % (env['CXX']))  
         Exit(1)  
 else:  
     if not conf.CheckFunc('printf', language='c'):  
         print("Cannot run C compiler '%s' (check config.log)" % (env['CC']))  
         Exit(1)  
     if not conf.CheckFunc('printf', language='c++'):  
         print("Cannot run C++ compiler '%s' (check config.log)" % (env['CXX']))  
         Exit(1)  
   
 if conf.CheckFunc('gethostname'):  
     conf.env.Append(CPPDEFINES = ['HAVE_GETHOSTNAME'])  
485    
486  ######## Python headers & library (required)  ######## Python headers & library (required)
487    env=checkPython(env)
488    
489  python_inc_path=sysconfig.get_python_inc()  ######## boost & boost-python (required)
490  if IS_WINDOWS:  env=checkBoost(env)
     python_lib_path=os.path.join(sysconfig.get_config_var('prefix'), 'libs')  
 elif env['PLATFORM']=='darwin':  
     python_lib_path=sysconfig.get_config_var('LIBPL')  
 else:  
     python_lib_path=sysconfig.get_config_var('LIBDIR')  
 #python_libs=[sysconfig.get_config_var('LDLIBRARY')] # only on linux  
 if IS_WINDOWS:  
     python_libs=['python%s%s'%(sys.version_info[0], sys.version_info[1])]  
 else:  
     python_libs=['python'+sysconfig.get_python_version()]  
   
 if sysheaderopt == '':  
     conf.env.AppendUnique(CPPPATH = [python_inc_path])  
 else:  
     conf.env.Append(CCFLAGS = [sysheaderopt, python_inc_path])  
   
 conf.env.AppendUnique(LIBPATH = [python_lib_path])  
 conf.env.AppendUnique(LIBS = python_libs)  
 # The wrapper script needs to find the libs  
 conf.env.PrependENVPath(LD_LIBRARY_PATH_KEY, python_lib_path)  
   
 if not conf.CheckCHeader('Python.h'):  
     print("Cannot find python include files (tried 'Python.h' in directory %s)" % (python_inc_path))  
     Exit(1)  
 if not conf.CheckFunc('Py_Exit'):  
     print("Cannot find python library method Py_Main (tried %s in directory %s)" % (python_libs, python_lib_path))  
     Exit(1)  
   
 # Commit changes to environment  
 env = conf.Finish()  
491    
492  ######## boost (required)  ######## NVCC version (optional)
493    if env['cuda']:
494        env=checkCudaVersion(env)
495    
496  boost_inc_path,boost_lib_path=findLibWithHeader(env, env['boost_libs'], 'boost/python.hpp', env['boost_prefix'], lang='c++')  ######## numpy (required) and numpy headers (optional)
497  if sysheaderopt == '':  env=checkNumpy(env)
     env.AppendUnique(CPPPATH = [boost_inc_path])  
 else:  
     # This is required because we can't -isystem /usr/include since it breaks  
     # std includes  
     if os.path.normpath(boost_inc_path) == '/usr/include':  
         conf.env.Append(CCFLAGS=[sysheaderopt, os.path.join(boost_inc_path,'boost')])  
     else:  
         env.Append(CCFLAGS=[sysheaderopt, boost_inc_path])  
   
 env.AppendUnique(LIBPATH = [boost_lib_path])  
 env.AppendUnique(LIBS = env['boost_libs'])  
 env.PrependENVPath(LD_LIBRARY_PATH_KEY, boost_lib_path)  
498    
499  ######## numpy (required)  ######## CppUnit (required for tests)
500    env=checkCppUnit(env)
501    
502  try:  ######## optional python modules (sympy, pyproj)
503      from numpy import identity  env=checkOptionalModules(env)
 except ImportError:  
     print("Cannot import numpy, you need to set your PYTHONPATH and probably %s"%LD_LIBRARY_PATH_KEY)  
     Exit(1)  
   
 ######## VTK (optional)  
504    
505  if env['pyvisi']:  ######## optional dependencies (netCDF, PAPI, MKL, UMFPACK, Lapack, Silo, ...)
506      try:  env=checkOptionalLibraries(env)
         import vtk  
         env['pyvisi'] = True  
     except ImportError:  
         print("Cannot import vtk, disabling pyvisi.")  
         env['pyvisi'] = False  
   
 ######## netCDF (optional)  
   
 netcdf_inc_path=''  
 netcdf_lib_path=''  
 if env['netcdf']:  
     netcdf_inc_path,netcdf_lib_path=findLibWithHeader(env, env['netcdf_libs'], 'netcdf.h', env['netcdf_prefix'], lang='c++')  
     env.AppendUnique(CPPPATH = [netcdf_inc_path])  
     env.AppendUnique(LIBPATH = [netcdf_lib_path])  
     env.AppendUnique(LIBS = env['netcdf_libs'])  
     env.PrependENVPath(LD_LIBRARY_PATH_KEY, netcdf_lib_path)  
     env.Append(CPPDEFINES = ['USE_NETCDF'])  
   
 ######## PAPI (optional)  
   
 papi_inc_path=''  
 papi_lib_path=''  
 if env['papi']:  
     papi_inc_path,papi_lib_path=findLibWithHeader(env, env['papi_libs'], 'papi.h', env['papi_prefix'], lang='c')  
     env.AppendUnique(CPPPATH = [papi_inc_path])  
     env.AppendUnique(LIBPATH = [papi_lib_path])  
     env.AppendUnique(LIBS = env['papi_libs'])  
     env.PrependENVPath(LD_LIBRARY_PATH_KEY, papi_lib_path)  
     env.Append(CPPDEFINES = ['BLOCKPAPI'])  
   
 ######## MKL (optional)  
   
 mkl_inc_path=''  
 mkl_lib_path=''  
 if env['mkl']:  
     mkl_inc_path,mkl_lib_path=findLibWithHeader(env, env['mkl_libs'], 'mkl_solver.h', env['mkl_prefix'], lang='c')  
     env.AppendUnique(CPPPATH = [mkl_inc_path])  
     env.AppendUnique(LIBPATH = [mkl_lib_path])  
     env.AppendUnique(LIBS = env['mkl_libs'])  
     env.PrependENVPath(LD_LIBRARY_PATH_KEY, mkl_lib_path)  
     env.Append(CPPDEFINES = ['MKL'])  
   
 ######## UMFPACK (optional)  
   
 umfpack_inc_path=''  
 umfpack_lib_path=''  
 if env['umfpack']:  
     umfpack_inc_path,umfpack_lib_path=findLibWithHeader(env, env['umfpack_libs'], 'umfpack.h', env['umfpack_prefix'], lang='c')  
     env.AppendUnique(CPPPATH = [umfpack_inc_path])  
     env.AppendUnique(LIBPATH = [umfpack_lib_path])  
     env.AppendUnique(LIBS = env['umfpack_libs'])  
     env.PrependENVPath(LD_LIBRARY_PATH_KEY, umfpack_lib_path)  
     env.Append(CPPDEFINES = ['UMFPACK'])  
507    
508  ######## LAPACK (optional)  #use gmsh info to set some defines
509    if env['gmsh'] == 's':
510  if env['lapack']=='mkl' and not env['mkl']:      env.Append(CPPDEFINES=['GMSH'])
511      print("mkl_lapack requires MKL!")  elif env['gmsh'] == 'm':
512      Exit(1)      env.Append(CPPDEFINES=['GMSH','GMSH_MPI'])
   
 env['uselapack'] = env['lapack']!='none'  
 lapack_inc_path=''  
 lapack_lib_path=''  
 if env['uselapack']:  
     header='clapack.h'  
     if env['lapack']=='mkl':  
         env.AppendUnique(CPPDEFINES = ['MKL_LAPACK'])  
         header='mkl_lapack.h'  
     lapack_inc_path,lapack_lib_path=findLibWithHeader(env, env['lapack_libs'], header, env['lapack_prefix'], lang='c')  
     env.AppendUnique(CPPPATH = [lapack_inc_path])  
     env.AppendUnique(LIBPATH = [lapack_lib_path])  
     env.AppendUnique(LIBS = env['lapack_libs'])  
     env.Append(CPPDEFINES = ['USE_LAPACK'])  
   
 ######## Silo (optional)  
   
 silo_inc_path=''  
 silo_lib_path=''  
 if env['silo']:  
     silo_inc_path,silo_lib_path=findLibWithHeader(env, env['silo_libs'], 'silo.h', env['silo_prefix'], lang='c')  
     env.AppendUnique(CPPPATH = [silo_inc_path])  
     env.AppendUnique(LIBPATH = [silo_lib_path])  
     # Note that we do not add the libs since they are only needed for the  
     # weipa library and tools.  
     #env.AppendUnique(LIBS = [env['silo_libs']])  
   
 ######## VisIt (optional)  
   
 visit_inc_path=''  
 visit_lib_path=''  
 if env['visit']:  
     visit_inc_path,visit_lib_path=findLibWithHeader(env, env['visit_libs'], 'VisItControlInterface_V2.h', env['visit_prefix'], lang='c')  
     env.AppendUnique(CPPPATH = [visit_inc_path])  
     env.AppendUnique(LIBPATH = [visit_lib_path])  
   
 ######## MPI (optional)  
   
 env['usempi'] = env['mpi']!='none'  
 mpi_inc_path=''  
 mpi_lib_path=''  
 if env['usempi']:  
     mpi_inc_path,mpi_lib_path=findLibWithHeader(env, env['mpi_libs'], 'mpi.h', env['mpi_prefix'], lang='c')  
     env.AppendUnique(CPPPATH = [mpi_inc_path])  
     env.AppendUnique(LIBPATH = [mpi_lib_path])  
     env.AppendUnique(LIBS = env['mpi_libs'])  
     env.PrependENVPath(LD_LIBRARY_PATH_KEY, mpi_lib_path)  
     env.Append(CPPDEFINES = ['ESYS_MPI', 'MPI_NO_CPPBIND', 'MPICH_IGNORE_CXX_SEEK'])  
     # NetCDF 4.1 defines MPI_Comm et al. if MPI_INCLUDED is not defined!  
     # On the other hand MPT and OpenMPI don't define the latter so we have to  
     # do that here  
     if env['netcdf'] and env['mpi'] in ['MPT','OPENMPI']:  
         env.Append(CPPDEFINES = ['MPI_INCLUDED'])  
   
 ######## ParMETIS (optional)  
   
 if not env['usempi']: env['parmetis'] = False  
   
 parmetis_inc_path=''  
 parmetis_lib_path=''  
 if env['parmetis']:  
     parmetis_inc_path,parmetis_lib_path=findLibWithHeader(env, env['parmetis_libs'], 'parmetis.h', env['parmetis_prefix'], lang='c')  
     env.AppendUnique(CPPPATH = [parmetis_inc_path])  
     env.AppendUnique(LIBPATH = [parmetis_lib_path])  
     env.AppendUnique(LIBS = env['parmetis_libs'])  
     env.PrependENVPath(LD_LIBRARY_PATH_KEY, parmetis_lib_path)  
     env.Append(CPPDEFINES = ['USE_PARMETIS'])  
   
 ######## gmsh (optional, for tests)  
   
 try:  
     import subprocess  
     p=subprocess.Popen(['gmsh', '-version'], stderr=subprocess.PIPE)  
     p.poll()  
     env['gmsh']=True  
 except OSError:  
     env['gmsh']=False  
513    
514  ######################## Summarize our environment ###########################  ######## PDFLaTeX (for documentation)
515    env=checkPDFLatex(env)
516    
517  # keep some of our install paths first in the list for the unit tests  # keep some of our install paths first in the list for the unit tests
518  env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])  env.PrependENVPath(LD_LIBRARY_PATH_KEY, env['libinstall'])
# Line 585  env.PrependENVPath('PYTHONPATH', prefix) Line 520  env.PrependENVPath('PYTHONPATH', prefix)
520  env['ENV']['ESCRIPT_ROOT'] = prefix  env['ENV']['ESCRIPT_ROOT'] = prefix
521    
522  if not env['verbose']:  if not env['verbose']:
     env['CCCOMSTR'] = "Compiling $TARGET"  
523      env['CXXCOMSTR'] = "Compiling $TARGET"      env['CXXCOMSTR'] = "Compiling $TARGET"
     env['SHCCCOMSTR'] = "Compiling $TARGET"  
524      env['SHCXXCOMSTR'] = "Compiling $TARGET"      env['SHCXXCOMSTR'] = "Compiling $TARGET"
525      env['ARCOMSTR'] = "Linking $TARGET"      env['ARCOMSTR'] = "Linking $TARGET"
526      env['LINKCOMSTR'] = "Linking $TARGET"      env['LINKCOMSTR'] = "Linking $TARGET"
# Line 598  if not env['verbose']: Line 531  if not env['verbose']:
531      env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"      env['PDFLATEXCOMSTR'] = "Building $TARGET from LaTeX input $SOURCES"
532      #Progress(['Checking -\r', 'Checking \\\r', 'Checking |\r', 'Checking /\r'], interval=17)      #Progress(['Checking -\r', 'Checking \\\r', 'Checking |\r', 'Checking /\r'], interval=17)
533    
 print("")  
 print("*** Config Summary (see config.log and lib/buildvars for details) ***")  
 print("Escript/Finley revision %s"%global_revision)  
 print("  Install prefix:  %s"%env['prefix'])  
 print("          Python:  %s"%sysconfig.PREFIX)  
 print("           boost:  %s"%env['boost_prefix'])  
 print("           numpy:  YES")  
 if env['usempi']:  
     print("             MPI:  YES (flavour: %s)"%env['mpi'])  
 else:  
     print("             MPI:  DISABLED")  
 if env['uselapack']:  
     print("          LAPACK:  YES (flavour: %s)"%env['lapack'])  
 else:  
     print("          LAPACK:  DISABLED")  
 d_list=[]  
 e_list=[]  
 for i in 'debug','openmp','netcdf','parmetis','papi','mkl','umfpack','silo','visit','pyvisi':  
     if env[i]: e_list.append(i)  
     else: d_list.append(i)  
 for i in e_list:  
     print("%16s:  YES"%i)  
 for i in d_list:  
     print("%16s:  DISABLED"%i)  
 if env['gmsh']:  
     print("            gmsh:  FOUND")  
 else:  
     print("            gmsh:  NOT FOUND")  
 if ((fatalwarning != '') and (env['werror'])):  
     print("  Treating warnings as errors")  
 else:  
     print("  NOT treating warnings as errors")  
 print("")  
   
534  ####################### Configure the subdirectories #########################  ####################### Configure the subdirectories #########################
535    
536  from grouptest import *  # remove obsolete files
537    if not env['usempi']:
538        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPI')))
539        Execute(Delete(os.path.join(env['libinstall'], 'pythonMPIredirect')))
540    
541    from grouptest import *
542  TestGroups=[]  TestGroups=[]
543    
544  # keep an environment without warnings-as-errors  # keep an environment without warnings-as-errors
# Line 654  Export( Line 557  Export(
557    ]    ]
558  )  )
559    
560  env.SConscript(dirs = ['tools/CppUnitTest/src'], variant_dir='$BUILD_DIR/$PLATFORM/tools/CppUnitTest', duplicate=0)  #do not auto build
561  env.SConscript(dirs = ['tools/escriptconvert'], variant_dir='$BUILD_DIR/$PLATFORM/tools/escriptconvert', duplicate=0)  env.SConscript(dirs = ['tools/escriptconvert'], variant_dir='$BUILD_DIR/$PLATFORM/tools/escriptconvert', duplicate=0)
562  env.SConscript(dirs = ['paso/src'], variant_dir='$BUILD_DIR/$PLATFORM/paso', duplicate=0)  env.SConscript(dirs = ['paso/src'], variant_dir='$BUILD_DIR/$PLATFORM/paso', duplicate=0)
563  env.SConscript(dirs = ['weipa/src'], variant_dir='$BUILD_DIR/$PLATFORM/weipa', duplicate=0)  env.SConscript(dirs = ['weipa/src'], variant_dir='$BUILD_DIR/$PLATFORM/weipa', duplicate=0)
564  env.SConscript(dirs = ['escript/src'], variant_dir='$BUILD_DIR/$PLATFORM/escript', duplicate=0)  env.SConscript(dirs = ['escript/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/escript', duplicate=0)
565    
566    env.SConscript(dirs = ['cusplibrary'])
567    
568    #This will pull in the escriptcore/py_src and escriptcore/test
569    env.SConscript(dirs = ['escriptcore/src'], variant_dir='$BUILD_DIR/$PLATFORM/escriptcore', duplicate=0)
570  env.SConscript(dirs = ['esysUtils/src'], variant_dir='$BUILD_DIR/$PLATFORM/esysUtils', duplicate=0)  env.SConscript(dirs = ['esysUtils/src'], variant_dir='$BUILD_DIR/$PLATFORM/esysUtils', duplicate=0)
571  env.SConscript(dirs = ['dudley/src'], variant_dir='$BUILD_DIR/$PLATFORM/dudley', duplicate=0)  env.SConscript(dirs = ['pasowrap/src'], variant_dir='$BUILD_DIR/$PLATFORM/pasowrap', duplicate=0)
572  env.SConscript(dirs = ['finley/src'], variant_dir='$BUILD_DIR/$PLATFORM/finley', duplicate=0)  if 'dudley' in env['domains']:
573        env.SConscript(dirs = ['dudley/src'], variant_dir='$BUILD_DIR/$PLATFORM/dudley', duplicate=0)
574    if 'finley' in env['domains']:
575        env.SConscript(dirs = ['finley/src'], variant_dir='$BUILD_DIR/$PLATFORM/finley', duplicate=0)
576    if 'ripley' in env['domains']:
577        env.SConscript(dirs = ['ripley/src'], variant_dir='$BUILD_DIR/$PLATFORM/ripley', duplicate=0)
578    if 'speckley' in env['domains']:
579        env.SConscript(dirs = ['speckley/src'], variant_dir='$BUILD_DIR/$PLATFORM/speckley', duplicate=0)
580    env.SConscript(dirs = ['downunder/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/downunder', duplicate=0)
581  env.SConscript(dirs = ['modellib/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/modellib', duplicate=0)  env.SConscript(dirs = ['modellib/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/modellib', duplicate=0)
 env.SConscript(dirs = ['doc'], variant_dir='$BUILD_DIR/$PLATFORM/doc', duplicate=0)  
 env.SConscript(dirs = ['pyvisi/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pyvisi', duplicate=0)  
582  env.SConscript(dirs = ['pycad/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pycad', duplicate=0)  env.SConscript(dirs = ['pycad/py_src'], variant_dir='$BUILD_DIR/$PLATFORM/pycad', duplicate=0)
583  env.SConscript(dirs = ['pythonMPI/src'], variant_dir='$BUILD_DIR/$PLATFORM/pythonMPI', duplicate=0)  env.SConscript(dirs = ['pythonMPI/src'], variant_dir='$BUILD_DIR/$PLATFORM/pythonMPI', duplicate=0)
584    env.SConscript(dirs = ['doc'], variant_dir='$BUILD_DIR/$PLATFORM/doc', duplicate=0)
585  env.SConscript(dirs = ['paso/profiling'], variant_dir='$BUILD_DIR/$PLATFORM/paso/profiling', duplicate=0)  env.SConscript(dirs = ['paso/profiling'], variant_dir='$BUILD_DIR/$PLATFORM/paso/profiling', duplicate=0)
586    
 ######################## Populate the buildvars file #########################  
587    
588  # remove obsolete file  ######################## Populate the buildvars file #########################
 if not env['usempi']:  
     Execute(Delete(os.path.join(env['libinstall'], 'pythonMPI')))  
     Execute(Delete(os.path.join(env['libinstall'], 'pythonMPIredirect')))  
589    
590  # Try to extract the boost version from version.hpp  write_buildvars(env)
 boosthpp=open(os.path.join(boost_inc_path, 'boost', 'version.hpp'))  
 boostversion='unknown'  
 try:  
     for line in boosthpp:  
         ver=re.match(r'#define BOOST_VERSION (\d+)',line)  
         if ver:  
             boostversion=ver.group(1)  
 except StopIteration:  
     pass  
 boosthpp.close()  
591    
592  buildvars=open(os.path.join(env['libinstall'], 'buildvars'), 'w')  write_launcher(env)
 buildvars.write("svn_revision="+str(global_revision)+"\n")  
 buildvars.write("prefix="+prefix+"\n")  
 buildvars.write("cc="+env['CC']+"\n")  
 buildvars.write("cxx="+env['CXX']+"\n")  
 buildvars.write("python="+sys.executable+"\n")  
 buildvars.write("python_version="+str(sys.version_info[0])+"."+str(sys.version_info[1])+"."+str(sys.version_info[2])+"\n")  
 buildvars.write("boost_inc_path="+boost_inc_path+"\n")  
 buildvars.write("boost_lib_path="+boost_lib_path+"\n")  
 buildvars.write("boost_version="+boostversion+"\n")  
 buildvars.write("debug=%d\n"%int(env['debug']))  
 buildvars.write("openmp=%d\n"%int(env['openmp']))  
 buildvars.write("mpi=%s\n"%env['mpi'])  
 buildvars.write("mpi_inc_path=%s\n"%mpi_inc_path)  
 buildvars.write("mpi_lib_path=%s\n"%mpi_lib_path)  
 buildvars.write("lapack=%s\n"%env['lapack'])  
 buildvars.write("pyvisi=%d\n"%env['pyvisi'])  
 for i in 'netcdf','parmetis','papi','mkl','umfpack','silo','visit':  
     buildvars.write("%s=%d\n"%(i, int(env[i])))  
     if env[i]:  
         buildvars.write("%s_inc_path=%s\n"%(i, eval(i+'_inc_path')))  
         buildvars.write("%s_lib_path=%s\n"%(i, eval(i+'_lib_path')))  
 buildvars.close()  
593    
594  ################### Targets to build and install libraries ###################  ################### Targets to build and install libraries ###################
595    
596  target_init = env.Command(env['pyinstall']+'/__init__.py', None, Touch('$TARGET'))  target_init = env.Command(os.path.join(env['pyinstall'],'__init__.py'), None, Touch('$TARGET'))
597  env.Alias('target_init', [target_init])  env.Alias('target_init', [target_init])
598    # delete buildvars upon cleanup
599    env.Clean('target_init', os.path.join(env['libinstall'], 'buildvars'))
600    
601  # The headers have to be installed prior to build in order to satisfy  # The headers have to be installed prior to build in order to satisfy
602  # #include <paso/Common.h>  # #include <paso/Common.h>
# Line 726  env.Alias('build_paso', ['install_paso_h Line 607  env.Alias('build_paso', ['install_paso_h
607  env.Alias('install_paso', ['build_paso', 'install_paso_lib'])  env.Alias('install_paso', ['build_paso', 'install_paso_lib'])
608    
609  env.Alias('build_escript', ['install_escript_headers', 'build_escript_lib', 'build_escriptcpp_lib'])  env.Alias('build_escript', ['install_escript_headers', 'build_escript_lib', 'build_escriptcpp_lib'])
610  env.Alias('install_escript', ['build_escript', 'install_escript_lib', 'install_escriptcpp_lib', 'install_escript_py'])  env.Alias('install_escript', ['build_escript', 'install_escript_lib', 'install_escriptcpp_lib', 'install_escriptcore_py', 'install_escript_py'])
611    
612  env.Alias('build_dudley', ['install_dudley_headers', 'build_dudley_lib', 'build_dudleycpp_lib'])  env.Alias('build_pasowrap', ['install_pasowrap_headers', 'build_pasowrap_lib', 'build_pasowrapcpp_lib'])
613  env.Alias('install_dudley', ['build_dudley', 'install_dudley_lib', 'install_dudleycpp_lib', 'install_dudley_py'])  env.Alias('install_pasowrap', ['build_pasowrap', 'install_pasowrap_lib', 'install_pasowrapcpp_lib', 'install_pasowrap_py'])
614    
615  env.Alias('build_finley', ['install_finley_headers', 'build_finley_lib', 'build_finleycpp_lib'])  if 'dudley' in env['domains']:
616  env.Alias('install_finley', ['build_finley', 'install_finley_lib', 'install_finleycpp_lib', 'install_finley_py'])      env.Alias('build_dudley', ['install_dudley_headers', 'build_dudley_lib', 'build_dudleycpp_lib'])
617        env.Alias('install_dudley', ['build_dudley', 'install_dudley_lib', 'install_dudleycpp_lib', 'install_dudley_py'])
618    
619    if 'finley' in env['domains']:
620        env.Alias('build_finley', ['install_finley_headers', 'build_finley_lib', 'build_finleycpp_lib'])
621        env.Alias('install_finley', ['build_finley', 'install_finley_lib', 'install_finleycpp_lib', 'install_finley_py'])
622    
623    if 'ripley' in env['domains']:
624        env.Alias('build_ripley', ['install_cusp_headers', 'install_ripley_headers', 'build_ripley_lib', 'build_ripleycpp_lib'])
625        env.Alias('install_ripley', ['build_ripley', 'install_ripley_lib', 'install_ripleycpp_lib', 'install_ripley_py'])
626    
627    if 'speckley' in env['domains']:
628        env.Alias('build_speckley', ['install_speckley_headers', 'build_speckley_lib', 'build_speckleycpp_lib'])
629        env.Alias('install_speckley', ['build_speckley', 'install_speckley_lib', 'install_speckleycpp_lib', 'install_speckley_py'])
630    
631  env.Alias('build_weipa', ['install_weipa_headers', 'build_weipa_lib', 'build_weipacpp_lib'])  env.Alias('build_weipa', ['install_weipa_headers', 'build_weipa_lib', 'build_weipacpp_lib'])
632  env.Alias('install_weipa', ['build_weipa', 'install_weipa_lib', 'install_weipacpp_lib', 'install_weipa_py'])  env.Alias('install_weipa', ['build_weipa', 'install_weipa_lib', 'install_weipacpp_lib', 'install_weipa_py'])
# Line 745  build_all_list = [] Line 639  build_all_list = []
639  build_all_list += ['build_esysUtils']  build_all_list += ['build_esysUtils']
640  build_all_list += ['build_paso']  build_all_list += ['build_paso']
641  build_all_list += ['build_escript']  build_all_list += ['build_escript']
642  build_all_list += ['build_dudley']  build_all_list += ['build_pasowrap']
643  build_all_list += ['build_finley']  if 'dudley' in env['domains']: build_all_list += ['build_dudley']
644    if 'finley' in env['domains']: build_all_list += ['build_finley']
645    if 'ripley' in env['domains']: build_all_list += ['build_ripley']
646    if 'speckley' in env['domains']: build_all_list += ['build_speckley']
647  build_all_list += ['build_weipa']  build_all_list += ['build_weipa']
648  if not IS_WINDOWS: build_all_list += ['build_escriptreader']  if not IS_WINDOWS and 'finley' in env['domains']:
649        build_all_list += ['build_escriptreader']
650  if env['usempi']:   build_all_list += ['build_pythonMPI']  if env['usempi']:   build_all_list += ['build_pythonMPI']
 build_all_list += ['build_escriptconvert']  
651  env.Alias('build_all', build_all_list)  env.Alias('build_all', build_all_list)
652    
653  install_all_list = []  install_all_list = []
# Line 758  install_all_list += ['target_init'] Line 655  install_all_list += ['target_init']
655  install_all_list += ['install_esysUtils']  install_all_list += ['install_esysUtils']
656  install_all_list += ['install_paso']  install_all_list += ['install_paso']
657  install_all_list += ['install_escript']  install_all_list += ['install_escript']
658  install_all_list += ['install_dudley']  install_all_list += ['install_pasowrap']
659  install_all_list += ['install_finley']  if 'dudley' in env['domains']: install_all_list += ['install_dudley']
660    if 'finley' in env['domains']: install_all_list += ['install_finley']
661    if 'ripley' in env['domains']: install_all_list += ['install_ripley']
662    if 'speckley' in env['domains']: install_all_list += ['install_speckley']
663  install_all_list += ['install_weipa']  install_all_list += ['install_weipa']
664  if not IS_WINDOWS: install_all_list += ['install_escriptreader']  if not IS_WINDOWS and 'finley' in env['domains']:
665  install_all_list += ['install_pyvisi_py']      install_all_list += ['install_escriptreader']
666    install_all_list += ['install_downunder_py']
667  install_all_list += ['install_modellib_py']  install_all_list += ['install_modellib_py']
668  install_all_list += ['install_pycad_py']  install_all_list += ['install_pycad_py']
669  if env['usempi']:   install_all_list += ['install_pythonMPI']  if env['usempi']:   install_all_list += ['install_pythonMPI']
 install_all_list += ['install_escriptconvert']  
670  env.Alias('install_all', install_all_list)  env.Alias('install_all', install_all_list)
671    
672  # Default target is install  # Default target is install
# Line 774  env.Default('install_all') Line 674  env.Default('install_all')
674    
675  ################## Targets to build and run the test suite ###################  ################## Targets to build and run the test suite ###################
676    
677  env.Alias('build_cppunittest', ['install_cppunittest_headers', 'build_cppunittest_lib'])  if not env['cppunit']:
678  env.Alias('install_cppunittest', ['build_cppunittest', 'install_cppunittest_lib'])      test_msg = env.Command('.dummy.', None, '@echo "Cannot run C++ unit tests, CppUnit not found!";exit 1')
679  env.Alias('run_tests', ['install_all', 'install_cppunittest_lib'])      env.Alias('run_tests', test_msg)
680  env.Alias('all_tests', ['install_all', 'install_cppunittest_lib', 'run_tests', 'py_tests'])      env.Alias('build_tests', '')
681    env.Alias('run_tests', ['install_all'])
682    env.Alias('all_tests', ['install_all', 'run_tests', 'py_tests'])
683  env.Alias('build_full',['install_all','build_tests','build_py_tests'])  env.Alias('build_full',['install_all','build_tests','build_py_tests'])
684  env.Alias('build_PasoTests','$BUILD_DIR/$PLATFORM/paso/profiling/PasoTests')  env.Alias('build_PasoTests','$BUILD_DIR/$PLATFORM/paso/profiling/PasoTests')
685    
686  ##################### Targets to build the documentation #####################  ##################### Targets to build the documentation #####################
687    
688  env.Alias('api_epydoc','install_all')  env.Alias('pdfdocs',['user_pdf', 'install_pdf', 'cookbook_pdf', 'inversion_pdf'])
689  env.Alias('docs', ['examples_tarfile', 'examples_zipfile', 'api_epydoc', 'api_doxygen', 'user_pdf', 'install_pdf', 'cookbook_pdf'])  env.Alias('basedocs', ['pdfdocs','examples_tarfile', 'examples_zipfile', 'api_doxygen'])
690    env.Alias('docs', ['basedocs', 'sphinxdoc'])
691  env.Alias('release_prep', ['docs', 'install_all'])  env.Alias('release_prep', ['docs', 'install_all'])
692    env.Alias('release_prep_old', ['basedocs', 'api_epydoc', 'install_all'])
693    
694    # The test scripts are always generated, this target allows us to
695    # generate the testscripts without doing a full build
696    env.Alias('testscripts',[])
697    
698  if not IS_WINDOWS:  if not IS_WINDOWS:
699      try:      generateTestScripts(env, TestGroups)
700          utest=open('utest.sh','w')  
701          utest.write(GroupTest.makeHeader(env['PLATFORM']))  
702          for tests in TestGroups:  ######################## Summarize our environment ###########################
703              utest.write(tests.makeString())  def print_summary():
704          utest.close()      print("")
705          Execute(Chmod('utest.sh', 0755))      print("*** Config Summary (see config.log and <prefix>/lib/buildvars for details) ***")
706          print("Generated utest.sh.")      print("Escript/Finley revision %s"%global_revision)
707      except IOError:      print("  Install prefix:  %s"%env['prefix'])
708          print("Error attempting to write unittests file.")      print("          Python:  %s"%sysconfig.PREFIX)
709          Exit(1)      print("           boost:  %s"%env['boost_prefix'])
710        if env['numpy_h']:
711            print("           numpy:  YES (with headers)")
712        else:
713            print("           numpy:  YES (without headers)")
714        if env['usempi']:
715            print("             MPI:  YES (flavour: %s)"%env['mpi'])
716        else:
717            print("             MPI:  NO")
718        if env['uselapack']:
719            print("          LAPACK:  YES (flavour: %s)"%env['lapack'])
720        else:
721            print("          LAPACK:  NO")
722        if env['cuda']:
723            print("            CUDA:  YES (nvcc: %s)"%env['nvcc_version'])
724        else:
725            print("            CUDA:  NO")
726        d_list=[]
727        e_list=[]
728        for i in 'debug','openmp','boomeramg','gdal','mkl','netcdf','papi','parmetis','pyproj','scipy','silo','sympy','umfpack','visit':
729            if env[i]: e_list.append(i)
730            else: d_list.append(i)
731        for i in e_list:
732            print("%16s:  YES"%i)
733        for i in d_list:
734            print("%16s:  NO"%i)
735        if env['cppunit']:
736            print("         CppUnit:  YES")
737        else:
738            print("         CppUnit:  NO")
739        if env['gmsh']=='m':
740            print("            gmsh:  YES, MPI-ENABLED")
741        elif env['gmsh']=='s':
742            print("            gmsh:  YES")
743        else:
744            print("            gmsh:  NO")
745        print(    "            gzip:  " + ("YES" if env['compressed_files'] else "NO"))
746    
747        if ((fatalwarning != '') and (env['werror'])):
748            print("  Treating warnings as errors")
749        else:
750            print("  NOT treating warnings as errors")
751        print("")
752        for w in env['warnings']:
753            print("WARNING: %s"%w)
754        if len(GetBuildFailures()):
755            print("\nERROR: build stopped due to errors\n")
756        else:
757            print("\nSUCCESS: build complete\n")
758    
759      # Make sure that the escript wrapper is in place  atexit.register(print_summary)
     if not os.path.isfile(os.path.join(env['bininstall'], 'run-escript')):  
         print("Copying escript wrapper.")  
         Execute(Copy(os.path.join(env['bininstall'],'run-escript'), 'bin/run-escript'))  
760    

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