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Revision 6613 - Directory Listing
Modified Tue Jun 20 10:09:18 2017 UTC (3 months ago) by jfenwick
Sigh


Revision 6612 - Directory Listing
Modified Tue Jun 20 03:21:40 2017 UTC (3 months ago) by jfenwick
Merging changes from release branch


Revision 6611 - Directory Listing
Modified Tue Jun 20 03:18:04 2017 UTC (3 months ago) by jfenwick
Removing to make way for more complete version from another branch.



Revision 6600 - Directory Listing
Modified Tue Jun 6 07:49:33 2017 UTC (3 months, 2 weeks ago) by jfenwick
Missing file


Revision 6592 - Directory Listing
Modified Mon Jun 5 02:15:01 2017 UTC (3 months, 2 weeks ago) by jfenwick
Some notes on trilinos

Revision 6589 - Directory Listing
Modified Thu Jun 1 06:27:03 2017 UTC (3 months, 2 weeks ago) by jfenwick
Change list for 5.2.

Update dev list.
Tell people to look at install guide for discussion of Trilinos requirements
but haven't actually added that bit yet.


Revision 6530 - Directory Listing
Modified Thu Mar 9 01:31:15 2017 UTC (6 months, 1 week ago) by jfenwick
Noting dependency on legacy-netcdf for debian styles


Revision 6523 - Directory Listing
Modified Tue Mar 7 06:50:34 2017 UTC (6 months, 2 weeks ago) by jfenwick
UPDATE THE COPYRIGHT DATES


Revision 6495 - Directory Listing
Modified Fri Feb 10 08:16:28 2017 UTC (7 months, 1 week ago) by gross
magnetic intensity added.

Revision 6492 - Directory Listing
Modified Thu Feb 9 07:32:43 2017 UTC (7 months, 1 week ago) by gross
new section in inversion guide

Revision 6410 - Directory Listing
Modified Tue Nov 1 06:12:42 2016 UTC (10 months, 2 weeks ago) by jfenwick
Very minor fix towards more repeatable builds


Revision 6398 - Directory Listing
Modified Tue Aug 2 12:39:07 2016 UTC (13 months, 2 weeks ago) by caltinay
update changelog.


Revision 6391 - Directory Listing
Modified Thu Jul 28 05:44:42 2016 UTC (13 months, 3 weeks ago) by jfenwick
Removing instructions for installing from packages
Started changelog in user guide


Revision 6321 - Directory Listing
Modified Thu Jun 23 05:38:50 2016 UTC (14 months, 4 weeks ago) by caltinay
feature #3: this should fix up remaining tests that only checked paso_direct.
I also moved paso_direct to 'hasFeature' as it's a boolean...


Revision 6319 - Directory Listing
Modified Thu Jun 23 05:01:39 2016 UTC (14 months, 4 weeks ago) by caltinay
remove Super LU from everywhere, we never supported it and never will directly.


Revision 6318 - Directory Listing
Modified Thu Jun 23 04:58:46 2016 UTC (14 months, 4 weeks ago) by caltinay
remove pastix from everywhere. We never supported it and never will directly.


Revision 6293 - Directory Listing
Modified Thu Jun 16 08:34:17 2016 UTC (15 months ago) by caltinay
more test fixes.


Revision 6274 - Directory Listing
Modified Mon Jun 13 02:02:34 2016 UTC (15 months, 1 week ago) by caltinay
another one.


Revision 6273 - Directory Listing
Modified Mon Jun 13 01:01:53 2016 UTC (15 months, 1 week ago) by caltinay
same as last one.


Revision 6272 - Directory Listing
Modified Mon Jun 13 01:00:49 2016 UTC (15 months, 1 week ago) by caltinay
don't sys.exit if there is no pyproj.


Revision 6231 - Directory Listing
Modified Mon May 30 03:50:37 2016 UTC (15 months, 3 weeks ago) by jfenwick
I don't think we need this (and debian points out that it doesn't have a copyright notice).


Revision 6230 - Directory Listing
Modified Sun May 29 10:46:41 2016 UTC (15 months, 3 weeks ago) by caltinay
unfortunately we need to skip this test now when both escript and gmsh
is built with MPI. Another solution would be to add another function to
gmshrunner for merging meshes and call it instead of subprocess.call(...)


Revision 6174 - Directory Listing
Modified Fri Apr 15 03:41:03 2016 UTC (17 months ago) by caltinay
Some reorganisation of EscriptParams and related changes.
We now distinguish between modifiable parameters and build features.
To interrogate the latter use:
escript::hasFeature()  [ python: escript.hasFeature() ]
and
escript::listFeatures() [ python: escript.listFeatures() ]

I have decided to add specific getters for the remaining few parameters to
avoid the penalty of string comparisons and to remove the wealth of friend
declarations with Data* classes.

Also made some changes in SConstruct to make sure we set *all* preprocessor
directives *before* building anything.

Still to do is dealing with checks for direct solver and gmsh. The latter needs
to be a runtime check rather than a compile time check.


Revision 6119 - Directory Listing
Modified Sun Apr 3 23:36:59 2016 UTC (17 months, 2 weeks ago) by caltinay
merging trilinos branch to trunk.
We can now build with trilinos and use it instead of paso for single PDEs.
There are some more things to be done...


Revision 6112 - Directory Listing
Modified Thu Mar 31 09:40:10 2016 UTC (17 months, 3 weeks ago) by jfenwick
Relicense all the things!



Revision 6095 - Directory Listing
Modified Sat Mar 26 03:06:30 2016 UTC (17 months, 3 weeks ago) by jfenwick
Fixing remaining examples


Revision 6094 - Directory Listing
Modified Fri Mar 25 14:19:11 2016 UTC (17 months, 3 weeks ago) by jfenwick
Fix more tests.  Note needed to change example to add another import.

This isn't all of the problems fixed.
There is at least one more import os missing.
But it's late.


Revision 6034 - Directory Listing
Modified Wed Mar 9 00:37:57 2016 UTC (18 months, 1 week ago) by caltinay
a few changes to GroupTest / utest:
GroupTest class now takes a name parameter that is used as (shell) function
name in utest for the test group.
By default all tests are run as before but one can now do:
./utest.sh build '-t2' escriptcpp
to only run the escript c++ unit tests.
Also tweaked a couple things so utest.sh does now work with dash.


Revision 6016 - Directory Listing
Modified Thu Mar 3 03:00:24 2016 UTC (18 months, 2 weeks ago) by caltinay
increase test size so we have enough elements for MPI size 20.


Revision 6001 - Directory Listing
Modified Tue Mar 1 05:01:49 2016 UTC (18 months, 3 weeks ago) by caltinay
Bye bye esysUtils.
Also removed first.h as escript/DataTypes.h is now required everywhere
and fulfills that role by including a boost python header first.


Revision 5995 - Directory Listing
Modified Mon Feb 29 00:01:56 2016 UTC (18 months, 3 weeks ago) by caltinay
removed pasowrap from doxyfile.


Revision 5938 - Directory Listing
Modified Thu Feb 18 06:30:35 2016 UTC (19 months ago) by jfenwick
Merging from 5937 on the complex branch

Some parts of complex work but all of it is
not unit tested and it is certainly not feature
complete (I haven't put any time into dealing with
subworld for complex).

The other important aspect of this merge is that
c++11 is now required to build escript.



Revision 5863 - Directory Listing
Modified Wed Jan 13 02:25:48 2016 UTC (20 months, 1 week ago) by jfenwick
Copyright dates updated.
\version for doxygen to read


Revision 5854 - Directory Listing
Modified Tue Dec 15 02:51:21 2015 UTC (21 months, 1 week ago) by jfenwick
Updated version info and remove all applied patches from the quilt series


Revision 5853 - Directory Listing
Modified Tue Dec 15 01:19:33 2015 UTC (21 months, 1 week ago) by jfenwick
bringing changes over from debian for 4.1
The quilt patch series do not make sense at the moment because most of them will already be encorporated 


Revision 5834 - Directory Listing
Modified Thu Nov 26 06:28:05 2015 UTC (21 months, 3 weeks ago) by jfenwick
More lintian fixes


Revision 5775 - Directory Listing
Modified Thu Jul 30 08:01:06 2015 UTC (2 years, 1 month ago) by sshaw
pushing release to trunk

Revision 5753 - Directory Listing
Modified Fri Jul 17 01:06:22 2015 UTC (2 years, 2 months ago) by sshaw
replacing xrange for py3 compatibility

Revision 5751 - Directory Listing
Modified Wed Jul 15 10:25:45 2015 UTC (2 years, 2 months ago) by jfenwick
Tests and tweaks for magneto-telluric

Revision 5750 - Directory Listing
Modified Wed Jul 15 09:59:49 2015 UTC (2 years, 2 months ago) by jfenwick
Fixing a python3 issue with voxet example

Revision 5749 - Directory Listing
Modified Wed Jul 15 08:23:11 2015 UTC (2 years, 2 months ago) by sshaw
now with proper namespacing on MT example fixes

Revision 5746 - Directory Listing
Modified Wed Jul 15 05:29:59 2015 UTC (2 years, 2 months ago) by sshaw
adding detection of missing direct solvers to MT tests

Revision 5741 - Directory Listing
Modified Tue Jul 14 01:16:47 2015 UTC (2 years, 2 months ago) by sshaw
making MT examples python3 and MPI safe

Revision 5738 - Directory Listing
Modified Mon Jul 13 07:52:05 2015 UTC (2 years, 2 months ago) by jfenwick
Added Ralf's examples.
Tests for correctness to follow later.


Revision 5735 - Directory Listing
Modified Fri Jul 10 00:03:36 2015 UTC (2 years, 2 months ago) by sshaw
updating doxygen config file version


Revision 5734 - Directory Listing
Modified Thu Jul 9 23:16:37 2015 UTC (2 years, 2 months ago) by jfenwick
Removing subworlds from the user guide until we tweak the interface.



Revision 5733 - Directory Listing
Modified Thu Jul 9 22:24:46 2015 UTC (2 years, 2 months ago) by jfenwick
Minor fixes to splitworld doco


Revision 5728 - Directory Listing
Modified Wed Jul 8 04:33:25 2015 UTC (2 years, 2 months ago) by sshaw
fixing some issues in splitworld doco


Revision 5725 - Directory Listing
Modified Tue Jul 7 04:09:10 2015 UTC (2 years, 2 months ago) by jfenwick
Adding split example to example dir

Revision 5724 - Directory Listing
Modified Mon Jul 6 05:40:35 2015 UTC (2 years, 2 months ago) by jfenwick
Added text for SubWorlds.


Revision 5723 - Directory Listing
Modified Mon Jul 6 01:51:13 2015 UTC (2 years, 2 months ago) by sshaw
adding division to future imports for voxet reader example

Revision 5722 - Directory Listing
Modified Mon Jul 6 01:43:30 2015 UTC (2 years, 2 months ago) by sshaw
doco updates, adding example gocad reader to user guide examples

Revision 5712 - Directory Listing
Modified Tue Jun 30 05:43:48 2015 UTC (2 years, 2 months ago) by caltinay
fixing second domain generation.


Revision 5710 - Directory Listing
Modified Tue Jun 30 03:42:04 2015 UTC (2 years, 2 months ago) by caltinay
Work around gmsh issue when optimizing mesh by disabling optimization for a test

Revision 5707 - Directory Listing
Modified Mon Jun 29 03:59:06 2015 UTC (2 years, 2 months ago) by sshaw
adding copyright headers to files without copyright info, moved header to top of file in some cases where it wasn't

Revision 5706 - Directory Listing
Modified Mon Jun 29 03:41:36 2015 UTC (2 years, 2 months ago) by sshaw
all python files now force use of python3 prints and division syntax to stop sneaky errors appearing in py3 environs

Revision 5705 - Directory Listing
Modified Mon Jun 29 01:07:07 2015 UTC (2 years, 2 months ago) by sshaw
no more tab characters in python files

Revision 5693 - Directory Listing
Modified Fri Jun 26 01:13:47 2015 UTC (2 years, 2 months ago) by sshaw
added info on multi-resolution ripley to user guide

Revision 5691 - Directory Listing
Modified Thu Jun 25 04:58:26 2015 UTC (2 years, 2 months ago) by sshaw
adding multires domains to changelist

Revision 5688 - Directory Listing
Modified Thu Jun 25 03:30:29 2015 UTC (2 years, 2 months ago) by sshaw
first pass at a changelist for 4.1

Revision 5684 - Directory Listing
Modified Wed Jun 24 04:52:14 2015 UTC (2 years, 2 months ago) by sshaw
no more multi-process segy exceptions in wave examples


Revision 5678 - Directory Listing
Modified Tue Jun 23 00:08:37 2015 UTC (2 years, 2 months ago) by sshaw
fixing synth TTI example: domain subdivision, spelling errors, and multi-proc SEGY exceptions

Revision 5677 - Directory Listing
Modified Mon Jun 22 08:05:28 2015 UTC (2 years, 3 months ago) by jduplessis
brick and rectangle documentations updates


Revision 5676 - Directory Listing
Modified Mon Jun 22 06:53:36 2015 UTC (2 years, 3 months ago) by sshaw
missing output directory created


Revision 5674 - Directory Listing
Modified Mon Jun 22 02:46:40 2015 UTC (2 years, 3 months ago) by caltinay
Fixed a few typos


Revision 5673 - Directory Listing
Modified Mon Jun 22 02:43:20 2015 UTC (2 years, 3 months ago) by jduplessis
makes meaning of solver options more clear


Revision 5671 - Directory Listing
Modified Fri Jun 19 07:15:38 2015 UTC (2 years, 3 months ago) by gross
start dirac example added

Revision 5670 - Directory Listing
Modified Fri Jun 19 07:14:10 2015 UTC (2 years, 3 months ago) by gross
documenation fro Dirac added

Revision 5668 - Directory Listing
Modified Fri Jun 19 04:22:12 2015 UTC (2 years, 3 months ago) by sshaw
and now with the correct function names being used

Revision 5667 - Directory Listing
Modified Fri Jun 19 04:19:54 2015 UTC (2 years, 3 months ago) by sshaw
stopping example wave scripts from trying to write SEGYs if obspy not installed

Revision 5666 - Directory Listing
Modified Fri Jun 19 02:09:55 2015 UTC (2 years, 3 months ago) by sshaw
adding example wave scripts to the built examples collection and to testing, shortened length of simulations to make testing bearable

Revision 5662 - Directory Listing
Modified Thu Jun 18 04:40:34 2015 UTC (2 years, 3 months ago) by caltinay
Fixes #259 - replaced all references to mayavi by Mayavi2 in the docs.
The arguments were already correct.


Revision 5658 - Directory Listing
Modified Wed Jun 17 23:39:18 2015 UTC (2 years, 3 months ago) by jfenwick
Add brief text about dudley to finley section and tweak ripley description.


Revision 5656 - Directory Listing
Modified Tue Jun 16 07:11:02 2015 UTC (2 years, 3 months ago) by jfenwick
Fixed incorrect package name in centos install instructions

Revision 5621 - Directory Listing
Modified Wed May 27 03:25:41 2015 UTC (2 years, 3 months ago) by sshaw
cookbook examples now using correct indices

Revision 5611 - Directory Listing
Modified Wed May 13 23:36:01 2015 UTC (2 years, 4 months ago) by jfenwick
Changes to reflect new debian and ubuntu releases.


Revision 5593 - Directory Listing
Modified Fri Apr 24 01:36:26 2015 UTC (2 years, 4 months ago) by jfenwick
Fixing institution name to comply with policy

Revision 5589 - Directory Listing
Modified Wed Apr 22 03:13:44 2015 UTC (2 years, 5 months ago) by jfenwick
Changes brought across from the debian preparation branch.



Revision 5575 - Directory Listing
Modified Wed Apr 1 03:17:22 2015 UTC (2 years, 5 months ago) by sshaw
sphinx now builds python doco including module-level docstrings and class __init__ docstrings, also cleared up some doco errors and added multires documentation

Revision 5547 - Directory Listing
Modified Thu Mar 19 01:20:20 2015 UTC (2 years, 6 months ago) by jfenwick
Modify centos install instructions to always add epel.
Have the correct macro expansion for \downunder


Revision 5507 - Directory Listing
Modified Thu Mar 5 06:26:14 2015 UTC (2 years, 6 months ago) by sshaw
adjusting cblib for examples to not use matplotlib's default of natgrid which is also by default not installed

Revision 5503 - Directory Listing
Modified Wed Mar 4 04:52:23 2015 UTC (2 years, 6 months ago) by jfenwick
Removing some traces of implied windows support

Revision 5502 - Directory Listing
Modified Mon Mar 2 01:09:24 2015 UTC (2 years, 6 months ago) by jfenwick
Removing Vince from active developer lists

Revision 5479 - Directory Listing
Modified Wed Feb 18 04:09:13 2015 UTC (2 years, 7 months ago) by jduplessis
updated old script

Revision 5477 - Directory Listing
Modified Wed Feb 18 00:32:21 2015 UTC (2 years, 7 months ago) by sshaw
fixing an older example script


Revision 5448 - Directory Listing
Modified Fri Feb 6 05:31:37 2015 UTC (2 years, 7 months ago) by jfenwick
Updating all the dates

Revision 5434 - Directory Listing
Modified Fri Jan 23 04:29:09 2015 UTC (2 years, 7 months ago) by jfenwick
Trying to fix mac tests

Revision 5417 - Directory Listing
Modified Wed Jan 14 01:54:19 2015 UTC (2 years, 8 months ago) by jfenwick
Fixing more tests to check for the optional natgrid package

Revision 5411 - Directory Listing
Modified Mon Dec 22 01:39:10 2014 UTC (2 years, 9 months ago) by jfenwick
Fixed py3 matplotlib detection. Converted a division for py3

Revision 5410 - Directory Listing
Modified Sun Dec 21 23:24:54 2014 UTC (2 years, 9 months ago) by jfenwick
Switching versions back to development and using a single reference file for version and date.

Revision 5407 - Directory Listing
Modified Thu Dec 18 02:48:24 2014 UTC (2 years, 9 months ago) by jfenwick
release changes

Revision 5400 - Directory Listing
Modified Wed Dec 17 02:59:38 2014 UTC (2 years, 9 months ago) by jduplessis
added unlink

Revision 5375 - Directory Listing
Modified Mon Dec 15 23:16:39 2014 UTC (2 years, 9 months ago) by sshaw
removing mixed tabs and spaces for python3


Revision 5361 - Directory Listing
Modified Mon Dec 15 00:53:41 2014 UTC (2 years, 9 months ago) by jfenwick
Partial better fix for natgrid problem

Revision 5355 - Directory Listing
Modified Fri Dec 12 03:57:25 2014 UTC (2 years, 9 months ago) by jfenwick
New options file for openSuse. Add natgridchecking for openSuse

Revision 5354 - Directory Listing
Modified Fri Dec 12 03:36:34 2014 UTC (2 years, 9 months ago) by jfenwick
Install guide fixes

Revision 5353 - Directory Listing
Modified Fri Dec 12 03:22:41 2014 UTC (2 years, 9 months ago) by jduplessis
adding dc_forward example

Revision 5347 - Directory Listing
Modified Fri Dec 12 01:01:27 2014 UTC (2 years, 9 months ago) by jfenwick
Check if pyproj is available before running example

Revision 5335 - Directory Listing
Modified Wed Dec 10 05:22:27 2014 UTC (2 years, 9 months ago) by jfenwick
install guide culling

Revision 5322 - Directory Listing
Modified Tue Dec 9 03:53:35 2014 UTC (2 years, 9 months ago) by jfenwick
Added NETCDF_BUILD to escript params. Tests now check this before testing netcdf dependent stuff

Revision 5302 - Directory Listing
Modified Thu Dec 4 06:16:28 2014 UTC (2 years, 9 months ago) by caltinay
some more.


Revision 5301 - Directory Listing
Modified Thu Dec 4 05:58:49 2014 UTC (2 years, 9 months ago) by caltinay
A lil' bit more meat in ripley.


Revision 5298 - Directory Listing
Modified Thu Dec 4 02:54:50 2014 UTC (2 years, 9 months ago) by caltinay
Doco updates.


Revision 5297 - Directory Listing
Modified Thu Dec 4 01:58:53 2014 UTC (2 years, 9 months ago) by caltinay
More user doco updates.


Revision 5296 - Directory Listing
Modified Wed Dec 3 07:22:17 2014 UTC (2 years, 9 months ago) by caltinay
More updates to user doc.


Revision 5295 - Directory Listing
Modified Wed Dec 3 05:35:28 2014 UTC (2 years, 9 months ago) by caltinay
fixed undef error and some content.


Revision 5294 - Directory Listing
Modified Wed Dec 3 05:30:18 2014 UTC (2 years, 9 months ago) by sshaw
working around oddness when catching ImportErrors after catching a propagated ImportError, cleaning up last of finley examples without domain checks

Revision 5293 - Directory Listing
Modified Wed Dec 3 04:28:17 2014 UTC (2 years, 9 months ago) by caltinay
added missing copyright headers in user guide plus fixed minor typo.


Revision 5292 - Directory Listing
Modified Wed Dec 3 04:08:14 2014 UTC (2 years, 9 months ago) by sshaw
more corrections to tests

Revision 5288 - Directory Listing
Modified Tue Dec 2 23:18:40 2014 UTC (2 years, 9 months ago) by sshaw
fixing tests for cases where required domains not built

Revision 5284 - Directory Listing
Modified Tue Dec 2 00:44:49 2014 UTC (2 years, 9 months ago) by sshaw
Lame is now accented in user doc where appropriate

Revision 5282 - Directory Listing
Modified Fri Nov 28 04:04:10 2014 UTC (2 years, 9 months ago) by jduplessis
dcres inversions won't be added yet


Revision 5281 - Directory Listing
Modified Fri Nov 28 02:43:30 2014 UTC (2 years, 9 months ago) by sshaw
updating current dev list, should probably add Ralf for DCres too

Revision 5280 - Directory Listing
Modified Fri Nov 28 02:23:08 2014 UTC (2 years, 9 months ago) by sshaw
adding initial 4.0 changelog

Revision 5279 - Directory Listing
Modified Thu Nov 27 00:26:18 2014 UTC (2 years, 9 months ago) by sshaw
adding ripley and speckley to user guide, a bit barebones still

Revision 5272 - Directory Listing
Modified Tue Nov 18 00:56:54 2014 UTC (2 years, 10 months ago) by sshaw
adding coupler doco, adjusting sphinx to use a math extension to deal with many warnings

Revision 5270 - Directory Listing
Modified Tue Nov 18 00:26:31 2014 UTC (2 years, 10 months ago) by jduplessis
fixed extra brace


Revision 5222 - Directory Listing
Modified Fri Oct 24 04:29:46 2014 UTC (2 years, 10 months ago) by jduplessis
getNumberOfDataPoints is a per rank operation


Revision 5213 - Directory Listing
Modified Wed Oct 22 05:59:37 2014 UTC (2 years, 11 months ago) by jduplessis
nlpde example for user guide

Revision 5180 - Directory Listing
Modified Thu Sep 25 11:25:29 2014 UTC (2 years, 11 months ago) by caltinay
Postpone closing netcdf file to avoid numpy segfault.


Revision 5163 - Directory Listing
Modified Wed Sep 17 08:56:09 2014 UTC (3 years ago) by gross
subsidence forward model and testing added

Revision 5148 - Directory Listing
Modified Mon Sep 15 01:25:23 2014 UTC (3 years ago) by caltinay
Merging ripley diagonal storage + CUDA support into trunk.
Options file version has been incremented due to new options
'cuda' and 'nvccflags'.


Revision 5116 - Directory Listing
Modified Mon Aug 18 01:56:41 2014 UTC (3 years, 1 month ago) by caltinay
making an example slightly more generic.


Revision 5100 - Directory Listing
Modified Tue Jul 15 07:36:29 2014 UTC (3 years, 2 months ago) by jduplessis
minor revisions


Revision 5093 - Directory Listing
Modified Tue Jul 8 01:54:09 2014 UTC (3 years, 2 months ago) by jfenwick
Document range of random number generator.


Revision 5057 - Directory Listing
Modified Fri Jun 20 01:53:38 2014 UTC (3 years, 3 months ago) by gross
some fixes for MT-TE

Revision 5017 - Directory Listing
Modified Tue Jun 10 02:16:18 2014 UTC (3 years, 3 months ago) by sshaw
scons now runs tests via a testrunner to collect lists of skipped tests in build/ (examples have their own builder since they aren't unit tests)
fixed hessian regularisation tests falling over by adding a shortcircuit optional arg that returns the pde, not the solution
added missing/omitted tests back into scons tests


Revision 5004 - Directory Listing
Modified Fri Jun 6 02:34:27 2014 UTC (3 years, 3 months ago) by gross
two bug fixes in the cross gradient term

Revision 4997 - Directory Listing
Modified Thu Jun 5 05:23:41 2014 UTC (3 years, 3 months ago) by jfenwick
Added missing link


Revision 4996 - Directory Listing
Modified Thu Jun 5 03:56:33 2014 UTC (3 years, 3 months ago) by jfenwick
Changed cookbook back to single spacing from double spacing.
All pdfs now link in the same docguide.tex file which explains what the
various bits of doco are.



Revision 4994 - Directory Listing
Modified Thu Jun 5 03:04:57 2014 UTC (3 years, 3 months ago) by jfenwick
Ensure isnan calls the c++ version except on windows compilers


Revision 4980 - Directory Listing
Modified Sun Jun 1 23:53:11 2014 UTC (3 years, 3 months ago) by gross
more fixes on MT

Revision 4976 - Directory Listing
Modified Thu May 29 08:27:53 2014 UTC (3 years, 3 months ago) by gross
gradient for coordinate systems added

Revision 4972 - Directory Listing
Modified Tue May 27 05:33:10 2014 UTC (3 years, 3 months ago) by sshaw
small doc grammar changes

Revision 4964 - Directory Listing
Modified Fri May 23 07:14:25 2014 UTC (3 years, 3 months ago) by gross
MT2D forward pproblem

Revision 4959 - Directory Listing
Modified Wed May 21 04:22:14 2014 UTC (3 years, 4 months ago) by gross
added some text on 2D MT TE inversion

Revision 4918 - Directory Listing
Modified Wed Apr 30 06:20:47 2014 UTC (3 years, 4 months ago) by caltinay
instructions for FreeBSD 10.0


Revision 4915 - Directory Listing
Modified Wed Apr 30 05:29:23 2014 UTC (3 years, 4 months ago) by jfenwick
Fixes for macports

Revision 4914 - Directory Listing
Modified Wed Apr 30 04:58:45 2014 UTC (3 years, 4 months ago) by sshaw
removing spare 'as'


Revision 4913 - Directory Listing
Modified Wed Apr 30 04:57:21 2014 UTC (3 years, 4 months ago) by jfenwick
Reorder homebrew install

Revision 4906 - Directory Listing
Modified Tue Apr 29 05:27:34 2014 UTC (3 years, 4 months ago) by sshaw
restoring lost changes

Revision 4905 - Directory Listing
Modified Tue Apr 29 05:16:13 2014 UTC (3 years, 4 months ago) by sshaw
updated install doc


Revision 4903 - Directory Listing
Modified Tue Apr 29 04:12:59 2014 UTC (3 years, 4 months ago) by jduplessis
updates for centos 6.5 install instructions


Revision 4901 - Directory Listing
Modified Tue Apr 29 03:55:00 2014 UTC (3 years, 4 months ago) by jfenwick
Updated info about macos commandline tools to note existance of xcodebuild command.


Revision 4896 - Directory Listing
Modified Tue Apr 29 00:35:22 2014 UTC (3 years, 4 months ago) by jfenwick
Added missing backslash
Corrected spelling mistake


Revision 4895 - Directory Listing
Modified Tue Apr 29 00:21:43 2014 UTC (3 years, 4 months ago) by sshaw
affected tests now skipped if pyproj not installed

Revision 4893 - Directory Listing
Modified Mon Apr 28 04:03:41 2014 UTC (3 years, 4 months ago) by caltinay
typo


Revision 4892 - Directory Listing
Modified Mon Apr 28 03:30:29 2014 UTC (3 years, 4 months ago) by caltinay
scaled down grav_netcdf test...


Revision 4891 - Directory Listing
Modified Mon Apr 28 03:20:38 2014 UTC (3 years, 4 months ago) by caltinay
some changes to user guide.


Revision 4890 - Directory Listing
Modified Mon Apr 28 01:24:21 2014 UTC (3 years, 4 months ago) by jduplessis
added suggestion to copy options file from os directory.


Revision 4888 - Directory Listing
Modified Mon Apr 28 00:52:20 2014 UTC (3 years, 4 months ago) by jfenwick
Removing manual pagebreaks

Revision 4887 - Directory Listing
Modified Mon Apr 28 00:34:35 2014 UTC (3 years, 4 months ago) by jduplessis
Minor updates


Revision 4886 - Directory Listing
Modified Sun Apr 27 13:12:23 2014 UTC (3 years, 4 months ago) by jduplessis
rewording and checking


Revision 4885 - Directory Listing
Modified Sun Apr 27 11:48:36 2014 UTC (3 years, 4 months ago) by jduplessis
Small changes


Revision 4883 - Directory Listing
Modified Thu Apr 24 00:00:33 2014 UTC (3 years, 4 months ago) by jfenwick
Updated changes list and sorted dev lists


Revision 4882 - Directory Listing
Modified Wed Apr 23 14:54:26 2014 UTC (3 years, 4 months ago) by jduplessis
fixing small errors


Revision 4881 - Directory Listing
Modified Wed Apr 23 14:20:28 2014 UTC (3 years, 4 months ago) by jduplessis
grammar, spelling and formating changes.


Revision 4880 - Directory Listing
Modified Wed Apr 23 06:10:16 2014 UTC (3 years, 4 months ago) by jduplessis
added sympy to bib and making small grammar, spelling and style changes.


Revision 4879 - Directory Listing
Modified Wed Apr 23 00:50:36 2014 UTC (3 years, 4 months ago) by jduplessis
symbolic part of user guide nearly complete


Revision 4878 - Directory Listing
Modified Wed Apr 23 00:49:10 2014 UTC (3 years, 4 months ago) by jduplessis
adding figures for symbolic part of user guide.


Revision 4875 - Directory Listing
Modified Thu Apr 17 06:14:54 2014 UTC (3 years, 5 months ago) by jfenwick
Updated changelog

Revision 4859 - Directory Listing
Modified Thu Apr 10 00:23:29 2014 UTC (3 years, 5 months ago) by jfenwick
Avoid division by zero


Revision 4853 - Directory Listing
Modified Wed Apr 9 05:41:57 2014 UTC (3 years, 5 months ago) by jfenwick
Added import division and changed a few / to //


Revision 4848 - Directory Listing
Modified Wed Apr 9 00:26:32 2014 UTC (3 years, 5 months ago) by jfenwick
lots of future print_function

Revision 4834 - Directory Listing
Modified Mon Apr 7 00:32:14 2014 UTC (3 years, 5 months ago) by jfenwick
Added Jaco


Revision 4833 - Directory Listing
Modified Sun Apr 6 23:30:34 2014 UTC (3 years, 5 months ago) by jfenwick
Adding missing names.



Revision 4829 - Directory Listing
Modified Thu Apr 3 04:02:53 2014 UTC (3 years, 5 months ago) by caltinay
checkpointing some SparseMatrix cleanup.


Revision 4821 - Directory Listing
Modified Tue Apr 1 04:58:33 2014 UTC (3 years, 5 months ago) by sshaw
moved SolverOptions to c++, split into SolverOptions for the options and SolverBuddy as the state as a precursor to per-pde solving... does break some use cases (e.g. pde.getSolverOptions().DIRECT will now fail, new value access is with SolverOptions.DIRECT), examples and documentation updated to match

Revision 4794 - Directory Listing
Modified Mon Mar 24 01:01:30 2014 UTC (3 years, 5 months ago) by jduplessis
adding symbolic to user guide, work in progress


Revision 4792 - Directory Listing
Modified Fri Mar 21 05:06:11 2014 UTC (3 years, 6 months ago) by jfenwick
make escriptcore/ visible

Revision 4777 - Directory Listing
Modified Wed Mar 19 23:52:36 2014 UTC (3 years, 6 months ago) by sshaw
replacing xrange with range for python3 compatibility, refs #106

Revision 4705 - Directory Listing
Modified Fri Feb 21 02:36:15 2014 UTC (3 years, 6 months ago) by jfenwick
Set the randomfill back to generating randoms and updated doco to tell people how to use it.


Revision 4688 - Directory Listing
Modified Wed Feb 19 03:18:58 2014 UTC (3 years, 7 months ago) by gross
acoustic forward problem + testing add

Revision 4673 - Directory Listing
Modified Thu Feb 13 08:14:11 2014 UTC (3 years, 7 months ago) by jfenwick
Ammended install doco for OSX

Revision 4669 - Directory Listing
Modified Tue Feb 11 06:10:27 2014 UTC (3 years, 7 months ago) by jfenwick
Replacing .eps figures in user guide with their pdf versions.
If you are creating new figures, then please don't use .eps



Revision 4657 - Directory Listing
Modified Thu Feb 6 06:12:20 2014 UTC (3 years, 7 months ago) by jfenwick
I changed some files.
Updated copyright notices, added GeoComp.




Revision 4656 - Directory Listing
Modified Thu Feb 6 05:12:01 2014 UTC (3 years, 7 months ago) by gross
removed unwanted table

Revision 4646 - Directory Listing
Modified Mon Feb 3 00:25:58 2014 UTC (3 years, 7 months ago) by gross
some extensions to synthetic_sonicHTI.py

Revision 4635 - Directory Listing
Modified Tue Jan 28 03:34:04 2014 UTC (3 years, 7 months ago) by sshaw
fixed mixed tabs/spaces for python 3 compatibility

Revision 4632 - Directory Listing
Modified Tue Jan 28 00:22:53 2014 UTC (3 years, 7 months ago) by gross
missing file

Revision 4631 - Directory Listing
Modified Fri Jan 24 04:13:56 2014 UTC (3 years, 7 months ago) by gross
2d TTI added

Revision 4630 - Directory Listing
Modified Fri Jan 24 03:32:11 2014 UTC (3 years, 7 months ago) by sshaw
fixed a leftover from testin gin seismic, changed synthetic_VTI example back to original large 2D problem

Revision 4629 - Directory Listing
Modified Fri Jan 24 03:29:25 2014 UTC (3 years, 7 months ago) by sshaw
added dirac point interpolation to ripley (and fixed dirac points in Brick)
added fast wave assembler for Brick and minor correction to fast wave assembler for Rectangle


Revision 4623 - Directory Listing
Modified Fri Jan 17 05:53:17 2014 UTC (3 years, 8 months ago) by sshaw
added missing files and a spare missing comma, also the ability for finley VTIWaves to not crash

Revision 4622 - Directory Listing
Modified Fri Jan 17 04:55:41 2014 UTC (3 years, 8 months ago) by sshaw
Added dirac support to ripley, added interface for custom assemblers for ripleydomains (also added the custom assembler for 2D VTI waves), changed synthetic_VTI example to use the new, faster custom assembler


Revision 4608 - Directory Listing
Modified Fri Dec 20 01:53:04 2013 UTC (3 years, 9 months ago) by sshaw
tiny grammar fix in user guide

Revision 4602 - Directory Listing
Modified Wed Dec 18 01:15:22 2013 UTC (3 years, 9 months ago) by jfenwick
Fixed missing \


Revision 4601 - Directory Listing
Modified Tue Dec 17 23:37:08 2013 UTC (3 years, 9 months ago) by gross
downunder: self-demagnetization added as forward model. 



Revision 4599 - Directory Listing
Modified Sun Dec 15 23:51:13 2013 UTC (3 years, 9 months ago) by sshaw
merged 3.4.1 release changes into trunk

Revision 4598 - Directory Listing
Modified Sun Dec 15 23:39:16 2013 UTC (3 years, 9 months ago) by rschaa
Minor change to figure.
Replaced .pdf with .png


Revision 4580 - Directory Listing
Modified Tue Dec 10 06:10:44 2013 UTC (3 years, 9 months ago) by sshaw
fixed doc building relying on potentially missing python package installs (bug #739)

Revision 4576 - Directory Listing
Modified Mon Dec 9 23:35:30 2013 UTC (3 years, 9 months ago) by sshaw
python3ified things, replaced mixed whitespace and xrange calls

Revision 4574 - Directory Listing
Modified Mon Dec 9 04:29:44 2013 UTC (3 years, 9 months ago) by gross
some corrections

Revision 4573 - Directory Listing
Modified Mon Dec 9 03:42:50 2013 UTC (3 years, 9 months ago) by gross
HTI added

Revision 4569 - Directory Listing
Modified Fri Dec 6 02:21:12 2013 UTC (3 years, 9 months ago) by gross
some update

Revision 4562 - Directory Listing
Modified Wed Dec 4 05:41:10 2013 UTC (3 years, 9 months ago) by gross
VTI wave added  

Revision 4561 - Directory Listing
Modified Wed Dec 4 05:19:32 2013 UTC (3 years, 9 months ago) by caltinay
Removed spurious print and some minor changes in inversion example.


Revision 4555 - Directory Listing
Modified Tue Dec 3 03:54:20 2013 UTC (3 years, 9 months ago) by sshaw
updated doc install instructions to match that required

Revision 4554 - Directory Listing
Modified Tue Dec 3 03:45:56 2013 UTC (3 years, 9 months ago) by sshaw
documentation spelling and whitespace corrections, added some Design.setOptions params that were missing from the userguide

Revision 4553 - Directory Listing
Modified Mon Dec 2 07:18:02 2013 UTC (3 years, 9 months ago) by gross
clarification on receiver array

Revision 4552 - Directory Listing
Modified Mon Dec 2 06:13:47 2013 UTC (3 years, 9 months ago) by sshaw
Replaced non-visible (when built) unicode endash with single dash in user guide source

Revision 4551 - Directory Listing
Modified Mon Dec 2 03:32:23 2013 UTC (3 years, 9 months ago) by sshaw
Fixed missing install keyword in instructions


Revision 4550 - Directory Listing
Modified Fri Nov 29 07:44:37 2013 UTC (3 years, 9 months ago) by gross
some modifications

Revision 4548 - Directory Listing
Modified Fri Nov 29 04:39:15 2013 UTC (3 years, 9 months ago) by gross
renamed file

Revision 4537 - Directory Listing
Modified Mon Nov 25 06:44:46 2013 UTC (3 years, 9 months ago) by gross
missing references and double labeling fixed.

Revision 4535 - Directory Listing
Modified Wed Nov 20 06:37:53 2013 UTC (3 years, 10 months ago) by gross
strong correlation joint inversion fixed.

Revision 4532 - Directory Listing
Modified Thu Nov 7 04:54:56 2013 UTC (3 years, 10 months ago) by gross
strongly coupled joint inversion added

Revision 4495 - Directory Listing
Modified Fri Jul 5 02:19:47 2013 UTC (4 years, 2 months ago) by caltinay
Added support for more input data types in ER Mapper files.
Tests will follow soon.


Revision 4491 - Directory Listing
Modified Tue Jul 2 01:10:41 2013 UTC (4 years, 2 months ago) by caltinay
Reintegrating changes from 3.4 branch (with changes).


Revision 4465 - Directory Listing
Modified Mon Jun 17 06:49:39 2013 UTC (4 years, 3 months ago) by caltinay
Remove superfluous \label


Revision 4463 - Directory Listing
Modified Mon Jun 17 06:11:32 2013 UTC (4 years, 3 months ago) by gross
missing file

Revision 4455 - Directory Listing
Modified Thu Jun 13 03:13:36 2013 UTC (4 years, 3 months ago) by caltinay
Removed \LG etc. from inversion document.
Documented new GOCAD Voxet writer. Needs to be mentioned in 'changes' too.


Revision 4451 - Directory Listing
Modified Thu Jun 13 01:38:56 2013 UTC (4 years, 3 months ago) by jfenwick
some pending changes on badger

Revision 4450 - Directory Listing
Modified Thu Jun 13 00:45:59 2013 UTC (4 years, 3 months ago) by jfenwick
install docs - still waiting on Mac. Removing debug output.

Revision 4440 - Directory Listing
Modified Wed Jun 5 05:22:20 2013 UTC (4 years, 3 months ago) by jfenwick
options files changes and install changes

Revision 4439 - Directory Listing
Modified Wed Jun 5 02:09:35 2013 UTC (4 years, 3 months ago) by jfenwick
some work on install doco

Revision 4438 - Directory Listing
Modified Tue Jun 4 09:00:50 2013 UTC (4 years, 3 months ago) by jfenwick
Some changes to packaging

Revision 4433 - Directory Listing
Modified Fri May 31 12:09:58 2013 UTC (4 years, 3 months ago) by gross
some clarifications on geodetic coordinates. 
order of background magnetic flux density component has been corrected: input is now B_east, B_north, B_vertical.



Revision 4416 - Directory Listing
Modified Fri May 17 02:32:33 2013 UTC (4 years, 4 months ago) by jfenwick
Renaming a thing and adding some doco.

Revision 4406 - Directory Listing
Modified Tue May 14 02:54:09 2013 UTC (4 years, 4 months ago) by caltinay
Removed references to pyvisi which disappeared a few releases ago...


Revision 4398 - Directory Listing
Modified Thu May 9 08:42:44 2013 UTC (4 years, 4 months ago) by jfenwick
support for supressing doco subpackages. fiddling with one of the imports to try to reduce the number of places where Data appears.  Seriously it looks like we have 8 different Data classes

Revision 4396 - Directory Listing
Modified Wed May 8 09:27:10 2013 UTC (4 years, 4 months ago) by jfenwick
fix extraction script to pick up more classes. Stop models from importing escript into its namespace

Revision 4392 - Directory Listing
Modified Mon May 6 02:18:33 2013 UTC (4 years, 4 months ago) by caltinay
More saveSilo checks.


Revision 4391 - Directory Listing
Modified Mon May 6 02:15:48 2013 UTC (4 years, 4 months ago) by caltinay
Do not claim success when saving silo without silo support.


Revision 4385 - Directory Listing
Modified Mon Apr 29 06:03:30 2013 UTC (4 years, 4 months ago) by jfenwick
It was bugging me

Revision 4384 - Directory Listing
Modified Sat Apr 27 05:09:37 2013 UTC (4 years, 4 months ago) by jfenwick
Partially complete new install instructions

Revision 4383 - Directory Listing
Modified Fri Apr 26 06:13:12 2013 UTC (4 years, 4 months ago) by jfenwick
Changes to install doco


Revision 4379 - Directory Listing
Modified Wed Apr 24 20:31:19 2013 UTC (4 years, 4 months ago) by gross
more documentation on geodetic coordinates.

Revision 4376 - Directory Listing
Modified Mon Apr 22 08:44:45 2013 UTC (4 years, 5 months ago) by gross
domumentation update on coordinate systems - part I

Revision 4374 - Directory Listing
Modified Mon Apr 22 03:21:48 2013 UTC (4 years, 5 months ago) by gross
some typo fixed.

Revision 4373 - Directory Listing
Modified Mon Apr 22 03:16:24 2013 UTC (4 years, 5 months ago) by gross
more on geodetic coordinates

Revision 4362 - Directory Listing
Modified Tue Apr 16 04:37:13 2013 UTC (4 years, 5 months ago) by caltinay
Implemented NumpyData downunder source (w/ tests).
Added check of data dimensionality to domainbuilder since data_dim must equal
domain_dim-1 at the moment.


Revision 4355 - Directory Listing
Modified Fri Apr 5 07:25:02 2013 UTC (4 years, 5 months ago) by jfenwick
start install guide overhall

Revision 4349 - Directory Listing
Modified Wed Apr 3 09:37:54 2013 UTC (4 years, 5 months ago) by gross
first contributions for geodeic coordinates

Revision 4344 - Directory Listing
Modified Wed Mar 27 07:58:34 2013 UTC (4 years, 5 months ago) by gross
fix potential at botttom added.

Revision 4343 - Directory Listing
Modified Wed Mar 27 06:44:36 2013 UTC (4 years, 5 months ago) by gross
 

Revision 4323 - Directory Listing
Modified Tue Mar 19 00:17:36 2013 UTC (4 years, 6 months ago) by jfenwick
Bringing across changes from release3.3.1. (Version names are set back to Development).

Revision 4311 - Directory Listing
Modified Tue Mar 12 04:26:24 2013 UTC (4 years, 6 months ago) by jfenwick
gracefully end if pyproj is not installed

Revision 4310 - Directory Listing
Modified Tue Mar 12 03:23:26 2013 UTC (4 years, 6 months ago) by jfenwick
examples don't FAIL if tool is not installed

Revision 4309 - Directory Listing
Modified Mon Mar 11 05:07:39 2013 UTC (4 years, 6 months ago) by caltinay
Temporary workaround for sys.exit() causing unclean exit with MPI.


Revision 4308 - Directory Listing
Modified Mon Mar 11 02:47:59 2013 UTC (4 years, 6 months ago) by caltinay
Added missing import.


Revision 4306 - Directory Listing
Modified Mon Mar 11 02:36:55 2013 UTC (4 years, 6 months ago) by caltinay
python 3 compat.


Revision 4303 - Directory Listing
Modified Mon Mar 11 01:17:39 2013 UTC (4 years, 6 months ago) by caltinay
Enabled index in inversion doc. Eliminated some typos.


Revision 4301 - Directory Listing
Modified Mon Mar 11 00:52:31 2013 UTC (4 years, 6 months ago) by jfenwick
Updated copyright on doco that has not existed all the way back to 2003.
Added Azadeh and Vince to credits


Revision 4299 - Directory Listing
Modified Mon Mar 11 00:40:09 2013 UTC (4 years, 6 months ago) by caltinay
Exit with a warning in example files that require unavailable scipy.
bollide->hamster
added warnings to scons for scipy and gdal


Revision 4298 - Directory Listing
Modified Mon Mar 11 00:03:22 2013 UTC (4 years, 6 months ago) by azadeh
changing Magnetic Images


Revision 4297 - Directory Listing
Modified Fri Mar 8 06:14:17 2013 UTC (4 years, 6 months ago) by jfenwick
Removing the sphinx spelling checker since it breaks my build.  Updated the genrst script so that non-package modules still show up in the doco. Still needs a bit of a tweak in the long term

Revision 4295 - Directory Listing
Modified Fri Mar 8 04:42:01 2013 UTC (4 years, 6 months ago) by caltinay
de-cluttered sconstruct a bit and fixed a script.


Revision 4294 - Directory Listing
Modified Fri Mar 8 03:37:10 2013 UTC (4 years, 6 months ago) by gross
text for magnetic inversion tutorial added.

Revision 4290 - Directory Listing
Modified Thu Mar 7 07:04:29 2013 UTC (4 years, 6 months ago) by jfenwick
Ignore __pycache__ when generating sphinx docs

Revision 4289 - Directory Listing
Modified Thu Mar 7 07:02:59 2013 UTC (4 years, 6 months ago) by jfenwick
including inversion examples in bundles and tests

Revision 4288 - Directory Listing
Modified Thu Mar 7 06:35:14 2013 UTC (4 years, 6 months ago) by gross
some modifications clarifying the B field orientation

Revision 4287 - Directory Listing
Modified Thu Mar 7 05:26:44 2013 UTC (4 years, 6 months ago) by caltinay
Removed simpleGeoMagnetic field function from doco and example source.


Revision 4286 - Directory Listing
Modified Thu Mar 7 04:28:11 2013 UTC (4 years, 6 months ago) by caltinay
Assorted spelling fixes.


Revision 4285 - Directory Listing
Modified Thu Mar 7 01:08:43 2013 UTC (4 years, 6 months ago) by caltinay
Corrected some spelling.


Revision 4282 - Directory Listing
Modified Wed Mar 6 08:33:59 2013 UTC (4 years, 6 months ago) by gross
first contribution for the magnetic cookbook.

Revision 4279 - Directory Listing
Modified Wed Mar 6 05:10:44 2013 UTC (4 years, 6 months ago) by caltinay
Update to API doco and separate section for multiple data sets.


Revision 4278 - Directory Listing
Modified Wed Mar 6 04:45:40 2013 UTC (4 years, 6 months ago) by gross
joint inversion chapter in part I replaced by announcment

Revision 4274 - Directory Listing
Modified Tue Mar 5 06:10:17 2013 UTC (4 years, 6 months ago) by caltinay
Small fix to example file.


Revision 4273 - Directory Listing
Modified Tue Mar 5 04:14:44 2013 UTC (4 years, 6 months ago) by caltinay
More doco updates and change to the return value of minimizers.


Revision 4272 - Directory Listing
Modified Tue Mar 5 01:06:45 2013 UTC (4 years, 6 months ago) by caltinay
Finished gravity part in cookbook. Started review of class descriptions.


Revision 4271 - Directory Listing
Modified Mon Mar 4 05:59:59 2013 UTC (4 years, 6 months ago) by caltinay
Finished data-with-holes section and added a few more notes about optional
arguments further up. Changed example scripts to show usage of special
features.


Revision 4269 - Directory Listing
Modified Mon Mar 4 00:54:29 2013 UTC (4 years, 6 months ago) by caltinay
Some more work.


Revision 4268 - Directory Listing
Modified Mon Mar 4 00:41:08 2013 UTC (4 years, 6 months ago) by gross
some citation fixed.


Revision 4267 - Directory Listing
Modified Fri Mar 1 04:50:54 2013 UTC (4 years, 6 months ago) by caltinay
Updated inversion example scripts, added ER Mapper data, checked results
and corrected some issues. Cookbook does not reflect the changes yet.


Revision 4266 - Directory Listing
Modified Fri Mar 1 01:37:41 2013 UTC (4 years, 6 months ago) by caltinay
Deleted old data files.


Revision 4260 - Directory Listing
Modified Wed Feb 27 04:58:47 2013 UTC (4 years, 6 months ago) by azadeh
adding gravity and magnetic data files which used for inversions


Revision 4259 - Directory Listing
Modified Wed Feb 27 03:52:35 2013 UTC (4 years, 6 months ago) by azadeh
cookmagnetic


Revision 4258 - Directory Listing
Modified Wed Feb 27 03:50:08 2013 UTC (4 years, 6 months ago) by azadeh
cookmagnetic


Revision 4256 - Directory Listing
Modified Wed Feb 27 03:25:05 2013 UTC (4 years, 6 months ago) by azadeh
changing some magnetic result image names


Revision 4254 - Directory Listing
Modified Wed Feb 27 02:59:29 2013 UTC (4 years, 6 months ago) by azadeh
added joint result 


Revision 4253 - Directory Listing
Modified Wed Feb 27 02:55:32 2013 UTC (4 years, 6 months ago) by azadeh
removed joint result


Revision 4252 - Directory Listing
Modified Wed Feb 27 02:49:06 2013 UTC (4 years, 6 months ago) by azadeh
added magnetic inversion results


Revision 4251 - Directory Listing
Modified Wed Feb 27 02:47:10 2013 UTC (4 years, 6 months ago) by azadeh
removed old magnetic images
This line, and those below, will be ignored--

D    QLDMagMu10Contour.png
D    QLDMagMu01Slice.png
D    QLDMagMu1Contour.png
D    QLDMagMu100Slice.png
D    QLDMagMu01Contour.png
D    QLDMagMu10Slice.png
D    QLDMagMu100Contour.png
D    QLDMagMu1Slice.png


Revision 4250 - Directory Listing
Modified Wed Feb 27 00:26:12 2013 UTC (4 years, 6 months ago) by caltinay
Fix for joint example.


Revision 4248 - Directory Listing
Modified Mon Feb 25 05:53:55 2013 UTC (4 years, 6 months ago) by jfenwick
This should not trigger the build

Revision 4243 - Directory Listing
Modified Mon Feb 25 05:33:01 2013 UTC (4 years, 6 months ago) by jfenwick
For testing buildbot


Revision 4236 - Directory Listing
Modified Thu Feb 21 05:05:05 2013 UTC (4 years, 6 months ago) by jfenwick
Noted that saveDX and saveVTK have been removed.


Revision 4235 - Directory Listing
Modified Thu Feb 21 04:05:53 2013 UTC (4 years, 6 months ago) by caltinay
small fix.


Revision 4234 - Directory Listing
Modified Thu Feb 21 04:00:31 2013 UTC (4 years, 6 months ago) by gross
typo fixed

Revision 4233 - Directory Listing
Modified Thu Feb 21 02:00:09 2013 UTC (4 years, 6 months ago) by caltinay
updated content file (wishlist). Added byte swapping to plotter.


Revision 4231 - Directory Listing
Modified Wed Feb 20 07:41:52 2013 UTC (4 years, 7 months ago) by jfenwick
Updating doco for pyproj and a few other minor inconsistancies.  The inversion doco still needs to mention them.

Revision 4230 - Directory Listing
Modified Wed Feb 20 03:57:37 2013 UTC (4 years, 7 months ago) by caltinay
Removed some superfluous files.


Revision 4229 - Directory Listing
Modified Wed Feb 20 03:39:46 2013 UTC (4 years, 7 months ago) by azadeh
cookgravity


Revision 4228 - Directory Listing
Modified Wed Feb 20 03:34:07 2013 UTC (4 years, 7 months ago) by caltinay
Tweak & fix for data plotters


Revision 4225 - Directory Listing
Modified Wed Feb 20 02:45:09 2013 UTC (4 years, 7 months ago) by azadeh
moving images to figures folder


Revision 4224 - Directory Listing
Modified Wed Feb 20 02:34:18 2013 UTC (4 years, 7 months ago) by azadeh
changing images in cook gravity


Revision 4222 - Directory Listing
Modified Wed Feb 20 01:27:40 2013 UTC (4 years, 7 months ago) by caltinay
Disabled docs about NonlinearPDE and removed inversion from user's guide.


Revision 4220 - Directory Listing
Modified Wed Feb 20 01:17:30 2013 UTC (4 years, 7 months ago) by azadeh
adding gravity images with color bar in a folder


Revision 4218 - Directory Listing
Modified Tue Feb 19 06:11:35 2013 UTC (4 years, 7 months ago) by caltinay
Added gravity data in ER Mapper format and inversion script for it.


Revision 4215 - Directory Listing
Modified Tue Feb 19 02:52:40 2013 UTC (4 years, 7 months ago) by azadeh
adding gravity coarse data


Revision 4214 - Directory Listing
Modified Tue Feb 19 02:42:43 2013 UTC (4 years, 7 months ago) by caltinay
Added capstartfalse/true to escript cookbook figures with no caption so
the build succeeds with the hypcap package enabled.


Revision 4209 - Directory Listing
Modified Mon Feb 18 06:00:56 2013 UTC (4 years, 7 months ago) by caltinay
Fixed joint example file, added ER Mapper plot script, updated content file.


Revision 4208 - Directory Listing
Modified Mon Feb 18 05:02:28 2013 UTC (4 years, 7 months ago) by jfenwick
rename so the poor case-sensitive mac can checkout

Revision 4207 - Directory Listing
Modified Mon Feb 18 03:17:11 2013 UTC (4 years, 7 months ago) by azadeh
adding bar for gravity image


Revision 4205 - Directory Listing
Modified Fri Feb 15 06:02:07 2013 UTC (4 years, 7 months ago) by caltinay
Work on inversion cookbook. Also tweak to hyperref and a few more references.


Revision 4204 - Directory Listing
Modified Thu Feb 14 08:06:26 2013 UTC (4 years, 7 months ago) by gross
more on gravity and cleaning up file names

Revision 4203 - Directory Listing
Modified Thu Feb 14 07:05:58 2013 UTC (4 years, 7 months ago) by gross
Clarification of file names.

Revision 4202 - Directory Listing
Modified Thu Feb 14 06:53:41 2013 UTC (4 years, 7 months ago) by gross
Some adjustments to the sturture and naming

Revision 4201 - Directory Listing
Modified Thu Feb 14 06:40:01 2013 UTC (4 years, 7 months ago) by caltinay
DomainBuilder now ensures all data is in same UTM zone (with test).


Revision 4200 - Directory Listing
Modified Thu Feb 14 04:35:38 2013 UTC (4 years, 7 months ago) by azadeh
adding content folder to show input files


Revision 4199 - Directory Listing
Modified Wed Feb 13 08:39:05 2013 UTC (4 years, 7 months ago) by gross
more in the inversion cook-book

Revision 4198 - Directory Listing
Modified Wed Feb 13 06:49:10 2013 UTC (4 years, 7 months ago) by gross
name adjustments and remove unused files

Revision 4195 - Directory Listing
Modified Tue Feb 12 04:08:19 2013 UTC (4 years, 7 months ago) by jfenwick
Fixing case mismatch that was preventing bibtex from building

Revision 4194 - Directory Listing
Modified Tue Feb 12 03:04:17 2013 UTC (4 years, 7 months ago) by azadeh
Fixing some naming clashes

Revision 4193 - Directory Listing
Modified Tue Feb 12 00:59:49 2013 UTC (4 years, 7 months ago) by azadeh
reference


Revision 4191 - Directory Listing
Modified Mon Feb 11 08:22:47 2013 UTC (4 years, 7 months ago) by gross
more on gravity cook book

Revision 4189 - Directory Listing
Modified Mon Feb 11 04:17:00 2013 UTC (4 years, 7 months ago) by gross
some images added

Revision 4188 - Directory Listing
Modified Mon Feb 11 01:51:22 2013 UTC (4 years, 7 months ago) by caltinay
Removed unneeded (large) result files.


Revision 4187 - Directory Listing
Modified Mon Feb 11 01:05:10 2013 UTC (4 years, 7 months ago) by azadeh
adding gravity magnetic and joint inversion files in netcdf format 


Revision 4186 - Directory Listing
Modified Mon Feb 11 00:47:34 2013 UTC (4 years, 7 months ago) by azadeh
adding gravity plots with different Mu


Revision 4185 - Directory Listing
Modified Fri Feb 8 09:06:21 2013 UTC (4 years, 7 months ago) by gross
modifications to cookbook

Revision 4184 - Directory Listing
Modified Fri Feb 8 04:33:48 2013 UTC (4 years, 7 months ago) by azadeh
new images in cookgravity


Revision 4183 - Directory Listing
Modified Mon Feb 4 02:58:02 2013 UTC (4 years, 7 months ago) by azadeh
joint result image updated


Revision 4182 - Directory Listing
Modified Fri Feb 1 02:29:53 2013 UTC (4 years, 7 months ago) by caltinay
Revised Intro/Overview text.


Revision 4181 - Directory Listing
Modified Fri Feb 1 02:16:56 2013 UTC (4 years, 7 months ago) by azadeh
cook joint


Revision 4180 - Directory Listing
Modified Thu Jan 31 04:58:16 2013 UTC (4 years, 7 months ago) by azadeh
updating


Revision 4179 - Directory Listing
Modified Thu Jan 31 04:30:50 2013 UTC (4 years, 7 months ago) by caltinay
More doco.


Revision 4178 - Directory Listing
Modified Thu Jan 31 03:18:56 2013 UTC (4 years, 7 months ago) by caltinay
Some more doco.


Revision 4177 - Directory Listing
Modified Thu Jan 31 02:23:02 2013 UTC (4 years, 7 months ago) by azadeh
cook joint and magnetic


Revision 4175 - Directory Listing
Modified Wed Jan 30 05:01:50 2013 UTC (4 years, 7 months ago) by caltinay
joint netcdf example and some minor fixes to other example/test case.


Revision 4172 - Directory Listing
Modified Wed Jan 30 01:24:03 2013 UTC (4 years, 7 months ago) by azadeh
cookjoint
--This line, and those below, will be ignored

M    CookJoint.tex


Revision 4168 - Directory Listing
Modified Fri Jan 25 07:31:47 2013 UTC (4 years, 7 months ago) by jfenwick
Release title and dep fix

Revision 4167 - Directory Listing
Modified Fri Jan 25 05:21:30 2013 UTC (4 years, 7 months ago) by jfenwick
fixes for doco for earlier releases

Revision 4166 - Directory Listing
Modified Fri Jan 25 04:18:45 2013 UTC (4 years, 7 months ago) by azadeh
gravity


Revision 4165 - Directory Listing
Modified Fri Jan 25 01:07:57 2013 UTC (4 years, 7 months ago) by azadeh
joint


Revision 4164 - Directory Listing
Modified Thu Jan 24 05:34:13 2013 UTC (4 years, 7 months ago) by caltinay
netcdf data source description.


Revision 4163 - Directory Listing
Modified Thu Jan 24 05:03:48 2013 UTC (4 years, 7 months ago) by azadeh
changing


Revision 4162 - Directory Listing
Modified Thu Jan 24 03:53:19 2013 UTC (4 years, 7 months ago) by caltinay
Added missing example file to display netcdf data.


Revision 4161 - Directory Listing
Modified Thu Jan 24 03:22:38 2013 UTC (4 years, 7 months ago) by azadeh
modifying 


Revision 4160 - Directory Listing
Modified Thu Jan 24 00:13:32 2013 UTC (4 years, 7 months ago) by caltinay
Moved figures to subdir and added more DataSource doco.


Revision 4159 - Directory Listing
Modified Thu Jan 24 00:05:28 2013 UTC (4 years, 7 months ago) by azadeh
dding magnetic images


Revision 4158 - Directory Listing
Modified Wed Jan 23 07:02:21 2013 UTC (4 years, 7 months ago) by caltinay
Write output even when max iterations reached.


Revision 4157 - Directory Listing
Modified Wed Jan 23 03:52:07 2013 UTC (4 years, 7 months ago) by caltinay
added magnetic netcdf example (no data yet).


Revision 4156 - Directory Listing
Modified Wed Jan 23 03:45:14 2013 UTC (4 years, 7 months ago) by azadeh
changes in document


Revision 4155 - Directory Listing
Modified Wed Jan 23 00:05:03 2013 UTC (4 years, 7 months ago) by jfenwick
Removed some incorrect ACcESS copyright attributions [2010 or later] since ACcESS did not exist at that point. Also added 2013 to a couple of files which I missed.

Revision 4154 - Directory Listing
Modified Tue Jan 22 09:30:23 2013 UTC (4 years, 7 months ago) by jfenwick
Round 1 of copyright fixes

Revision 4153 - Directory Listing
Modified Tue Jan 22 01:57:50 2013 UTC (4 years, 7 months ago) by gross
no driver example added. Doe not work yet.

Revision 4152 - Directory Listing
Modified Tue Jan 22 00:29:03 2013 UTC (4 years, 7 months ago) by caltinay
Moved figures to subdirectory.


Revision 4151 - Directory Listing
Modified Tue Jan 22 00:23:39 2013 UTC (4 years, 7 months ago) by azadeh
update joint and magnetic cookbook.


Revision 4149 - Directory Listing
Modified Mon Jan 21 02:03:31 2013 UTC (4 years, 8 months ago) by caltinay
Checkpoint - DomainBuilder documented.


Revision 4148 - Directory Listing
Modified Mon Jan 21 01:04:20 2013 UTC (4 years, 8 months ago) by caltinay
Updated netcdf gravity inversion example.


Revision 4147 - Directory Listing
Modified Fri Jan 18 03:35:15 2013 UTC (4 years, 8 months ago) by gross
added some words in the overview and clean-up of bib.

Revision 4146 - Directory Listing
Modified Fri Jan 18 01:36:49 2013 UTC (4 years, 8 months ago) by gross
some remarks on the class dependency added.

Revision 4145 - Directory Listing
Modified Fri Jan 18 00:51:49 2013 UTC (4 years, 8 months ago) by caltinay
Checkpoint.


Revision 4144 - Directory Listing
Modified Fri Jan 18 00:34:21 2013 UTC (4 years, 8 months ago) by gross
new diagrams

Revision 4143 - Directory Listing
Modified Thu Jan 17 08:48:47 2013 UTC (4 years, 8 months ago) by gross
documentation of minimizer update plus clarification of notations on the code

Revision 4142 - Directory Listing
Modified Tue Jan 15 09:06:06 2013 UTC (4 years, 8 months ago) by gross
documentation of inversion cost function added

Revision 4141 - Directory Listing
Modified Tue Jan 15 04:11:12 2013 UTC (4 years, 8 months ago) by jfenwick
Fixed to scripts to allow doco to build in pbuilder.
Looking for libraries in the place they were built is a good I've found.


Revision 4139 - Directory Listing
Modified Tue Jan 15 00:13:28 2013 UTC (4 years, 8 months ago) by caltinay
Added L-BFGS reference and some minor changes.


Revision 4138 - Directory Listing
Modified Mon Jan 14 23:57:00 2013 UTC (4 years, 8 months ago) by gross
some rearrangement of part II

Revision 4136 - Directory Listing
Modified Mon Jan 14 05:20:34 2013 UTC (4 years, 8 months ago) by caltinay
clarifications about cartesian domain


Revision 4133 - Directory Listing
Modified Fri Jan 11 06:41:10 2013 UTC (4 years, 8 months ago) by gross
some documentation on Inversion Cost function added.

Revision 4131 - Directory Listing
Modified Fri Jan 11 03:54:16 2013 UTC (4 years, 8 months ago) by gross
documentaion of inversion driver API added.

Revision 4130 - Directory Listing
Modified Thu Jan 10 03:38:17 2013 UTC (4 years, 8 months ago) by caltinay
Do not end document after chapter :-)


Revision 4129 - Directory Listing
Modified Thu Jan 10 03:30:45 2013 UTC (4 years, 8 months ago) by caltinay
Fixed small typo


Revision 4127 - Directory Listing
Modified Thu Jan 10 00:46:56 2013 UTC (4 years, 8 months ago) by azadeh
add documentation for gravity.


Revision 4125 - Directory Listing
Modified Wed Jan 2 06:15:00 2013 UTC (4 years, 8 months ago) by gross
some fixes in the inversion set-up

Revision 4123 - Directory Listing
Modified Thu Dec 20 23:47:55 2012 UTC (4 years, 9 months ago) by gross
small fix

Revision 4122 - Directory Listing
Modified Thu Dec 20 05:42:35 2012 UTC (4 years, 9 months ago) by gross
More work towards joint inversion. There is now one class for inversion cost function which can handle all relevant cases 
for a single model inversion, cross gradient case and functional dependence of physical parameters.



Revision 4121 - Directory Listing
Modified Wed Dec 19 00:24:50 2012 UTC (4 years, 9 months ago) by gross
changes to the boundary conditions.

Revision 4120 - Directory Listing
Modified Tue Dec 18 04:49:37 2012 UTC (4 years, 9 months ago) by gross
some improvements to the robutness of the minimizer:
  a break down in the orthogonalization is hnadles via a restart.
  a restart can now be set manually
  the iteration throughs now an exception in case of failure.

It is also possible to set the density anomaly to zero for regions below a certain depth. 





Revision 4119 - Directory Listing
Modified Mon Dec 17 04:53:15 2012 UTC (4 years, 9 months ago) by gross
some adjustments to the documentation

Revision 4118 - Directory Listing
Modified Mon Dec 17 00:50:47 2012 UTC (4 years, 9 months ago) by jfenwick
Some tweaks for auto building - need more though

Revision 4112 - Directory Listing
Modified Fri Dec 14 01:51:30 2012 UTC (4 years, 9 months ago) by caltinay
Added simple gravity inversion example to be included in cookbook.


Revision 4111 - Directory Listing
Modified Fri Dec 14 01:46:13 2012 UTC (4 years, 9 months ago) by jfenwick
Fixed the genrst script to be executable

Revision 4110 - Directory Listing
Modified Fri Dec 14 01:21:33 2012 UTC (4 years, 9 months ago) by jfenwick
Fixed to use whatever python is leading the path.
Disabled epydoc


Revision 4107 - Directory Listing
Modified Thu Dec 13 05:54:03 2012 UTC (4 years, 9 months ago) by jfenwick
Now building doc using sphinx. Doc builds will fail until I get stuff installed on savanna

Revision 4106 - Directory Listing
Modified Thu Dec 13 05:08:44 2012 UTC (4 years, 9 months ago) by gross
some clarification on how to handle back ground magnetic field plus renaming of SyntheticData

Revision 4103 - Directory Listing
Modified Wed Dec 12 07:03:02 2012 UTC (4 years, 9 months ago) by jfenwick
Got rid of some unwanted sidebar elts. Correctly detect standalone functions exposed by boost

Revision 4102 - Directory Listing
Modified Wed Dec 12 06:17:03 2012 UTC (4 years, 9 months ago) by gross
more improvements on rescaling of weights. We now try to balance the gradients rather than the values.

Revision 4101 - Directory Listing
Modified Wed Dec 12 04:22:58 2012 UTC (4 years, 9 months ago) by jfenwick
First attempt at a sphinx generated API docs
In the project root:

mkdir doctest
python doc/sphinx_api/genrst.py
cd doctest
make html

should do



Revision 4099 - Directory Listing
Modified Tue Dec 11 04:04:47 2012 UTC (4 years, 9 months ago) by gross
Clarification of terminology and scaling.
Joint inversion is not working yet.


Revision 4097 - Directory Listing
Modified Fri Dec 7 01:18:35 2012 UTC (4 years, 9 months ago) by caltinay
Minor edits.


Revision 4096 - Directory Listing
Modified Thu Dec 6 04:05:29 2012 UTC (4 years, 9 months ago) by jfenwick
temporary doc fixes and moving tsunami out of the way

Revision 4095 - Directory Listing
Modified Wed Dec 5 05:32:22 2012 UTC (4 years, 9 months ago) by caltinay
A bit of doco cleanup.


Revision 4093 - Directory Listing
Modified Fri Nov 30 04:52:01 2012 UTC (4 years, 9 months ago) by gross
There is now a coherent implementation of gravity and magnetic forward model including an update of the user's guide.

Revision 4091 - Directory Listing
Modified Mon Nov 26 10:27:29 2012 UTC (4 years, 9 months ago) by gross
Some terminology introduced and magnetic inversion corrected.

Revision 4088 - Directory Listing
Modified Thu Nov 22 23:31:37 2012 UTC (4 years, 9 months ago) by caltinay
Use kronecker, not numpy's identity in wave (why do these issues come up now?)


Revision 4087 - Directory Listing
Modified Thu Nov 22 22:28:01 2012 UTC (4 years, 9 months ago) by caltinay
Moved matplotlib imports in test scripts before escript since there is an
import chain which pulls it so the use() function has no effect.


Revision 4086 - Directory Listing
Modified Wed Nov 21 02:48:12 2012 UTC (4 years, 10 months ago) by jfenwick
Doco for 1D interpolation [resolves #631]

Revision 4082 - Directory Listing
Modified Mon Nov 19 06:16:06 2012 UTC (4 years, 10 months ago) by jfenwick
Minor changes to install doco

Revision 4075 - Directory Listing
Modified Thu Nov 15 03:31:37 2012 UTC (4 years, 10 months ago) by gross
missing latex files

Revision 4074 - Directory Listing
Modified Thu Nov 15 03:30:59 2012 UTC (4 years, 10 months ago) by gross
this will break the downundermodule: major revision of the classes.

Revision 4073 - Directory Listing
Modified Thu Nov 15 03:28:33 2012 UTC (4 years, 10 months ago) by jfenwick
Fixing doco build error


Revision 4068 - Directory Listing
Modified Tue Nov 13 04:42:08 2012 UTC (4 years, 10 months ago) by vboros
Small corrections to the magnetic forward model



Revision 4067 - Directory Listing
Modified Mon Nov 12 07:35:14 2012 UTC (4 years, 10 months ago) by vboros
Magnetostatics background added



Revision 4062 - Directory Listing
Modified Fri Nov 9 04:53:08 2012 UTC (4 years, 10 months ago) by caltinay
Start of module reference section in inversion guide.


Revision 4057 - Directory Listing
Modified Fri Nov 2 04:15:09 2012 UTC (4 years, 10 months ago) by caltinay
toc/hyperref fixes for inversion pdf.


Revision 4056 - Directory Listing
Modified Thu Nov 1 07:20:38 2012 UTC (4 years, 10 months ago) by jfenwick
Allow doxygen to build in another target
Debian build stuff begins


Revision 4055 - Directory Listing
Modified Thu Nov 1 00:22:01 2012 UTC (4 years, 10 months ago) by gross
Renaming of filenames

Revision 4054 - Directory Listing
Modified Wed Oct 31 23:27:57 2012 UTC (4 years, 10 months ago) by gross
prilimary checkin 

Revision 4052 - Directory Listing
Modified Wed Oct 31 05:50:35 2012 UTC (4 years, 10 months ago) by gross
missing references added (mantis id=683)

Revision 4051 - Directory Listing
Modified Wed Oct 31 03:40:47 2012 UTC (4 years, 10 months ago) by caltinay
Split inversion cookbook into two parts...


Revision 4049 - Directory Listing
Modified Wed Oct 31 00:50:50 2012 UTC (4 years, 10 months ago) by caltinay
Fixed typos.


Revision 4047 - Directory Listing
Modified Tue Oct 30 09:10:07 2012 UTC (4 years, 10 months ago) by gross
More on magnetic inversion

Revision 4045 - Directory Listing
Modified Tue Oct 30 03:57:22 2012 UTC (4 years, 10 months ago) by caltinay
Imported inversion cookbook.


Revision 4043 - Directory Listing
Modified Tue Oct 30 03:34:43 2012 UTC (4 years, 10 months ago) by caltinay
Compile fixes for install guide.


Revision 4021 - Directory Listing
Modified Mon Oct 15 02:31:00 2012 UTC (4 years, 11 months ago) by jfenwick
Doco fixes.
Unit test fix for sys.version_info type change


Revision 4005 - Directory Listing
Modified Fri Sep 28 06:09:03 2012 UTC (4 years, 11 months ago) by caltinay
test fixes, doco updates, annoyance removals.


Revision 3997 - Directory Listing
Modified Thu Sep 27 01:09:12 2012 UTC (4 years, 11 months ago) by caltinay
Add note to documentation that saveDataCSV will not work in all cases.


Revision 3994 - Directory Listing
Modified Wed Sep 26 07:38:38 2012 UTC (4 years, 11 months ago) by jfenwick
Install doco still needs work.
Removing some of the weird:
     esys.finley.finley
type modules

Revision 3991 - Directory Listing
Modified Tue Sep 25 23:52:22 2012 UTC (4 years, 11 months ago) by caltinay
Updated doxygen cfg file and made a few first changes to doco.


Revision 3989 - Directory Listing
Modified Tue Sep 25 02:21:54 2012 UTC (4 years, 11 months ago) by jfenwick
More copyright fixes.
pyvisi traces removed.
Some install doco

Revision 3982 - Directory Listing
Modified Fri Sep 21 03:23:22 2012 UTC (5 years ago) by jfenwick
More edits + removing pyvisi from trunk


Revision 3981 - Directory Listing
Modified Fri Sep 21 02:47:54 2012 UTC (5 years ago) by jfenwick
First pass of updating copyright notices

Revision 3975 - Directory Listing
Modified Thu Sep 20 01:54:06 2012 UTC (5 years ago) by caltinay
Merged symbolic branch into trunk. Curious what daniel and spartacus have to
say...


Revision 3970 - Directory Listing
Modified Wed Sep 19 02:28:27 2012 UTC (5 years ago) by jfenwick
More install doc fixes


Revision 3968 - Directory Listing
Modified Mon Sep 17 06:30:02 2012 UTC (5 years ago) by jfenwick
Starting updates to the install guide


Revision 3953 - Directory Listing
Modified Mon Sep 3 00:57:12 2012 UTC (5 years ago) by caltinay
Some test output adjustments.


Revision 3947 - Directory Listing
Modified Wed Aug 22 23:19:10 2012 UTC (5 years ago) by caltinay
Compiling and installing downunder module now. Adjusted import statements
accordingly. Added a gravity test run.


Revision 3942 - Directory Listing
Modified Fri Jul 27 01:04:48 2012 UTC (5 years, 1 month ago) by jfenwick
Porting changes back from 3.3 release branch


Revision 3940 - Directory Listing
Modified Thu Jul 26 05:54:58 2012 UTC (5 years, 1 month ago) by jfenwick
Disabling tests which do not allow MPI
Previously we allowed these if there was only one rank


Revision 3914 - Directory Listing
Modified Wed Jun 20 04:51:47 2012 UTC (5 years, 3 months ago) by jfenwick
Only allow setX from ContinuousFunctions.
This addresses mantis 644.

Revision 3911 - Directory Listing
Modified Thu Jun 14 01:01:03 2012 UTC (5 years, 3 months ago) by jfenwick
Copyright changes

Revision 3904 - Directory Listing
Modified Tue Jun 5 08:30:24 2012 UTC (5 years, 3 months ago) by gross
incorrect macro element argument removed

Revision 3901 - Directory Listing
Modified Wed May 23 08:09:45 2012 UTC (5 years, 3 months ago) by jfenwick
Rectangle and Brick use rich face element by default. 
This is to address issue #653

Updated unit tests to explicitly not use them where they didn't
specify previoulsy



Revision 3897 - Directory Listing
Modified Wed May 16 03:17:26 2012 UTC (5 years, 4 months ago) by jfenwick
correcting example

Revision 3894 - Directory Listing
Modified Wed Apr 11 03:13:15 2012 UTC (5 years, 5 months ago) by jfenwick
Still need to add notes to the install guide about Python3.


Revision 3893 - Directory Listing
Modified Wed Apr 11 01:40:10 2012 UTC (5 years, 5 months ago) by jfenwick
Pycad now generates scripts with floating points at 6 decimal places.
Tests have been ammended to match this.


Revision 3892 - Directory Listing
Modified Tue Apr 10 08:57:23 2012 UTC (5 years, 5 months ago) by jfenwick
Merged changes across from the attempt2 branch.
This version builds and passes python2 tests.
It also passes most python3 tests.




Revision 3792 - Directory Listing
Modified Wed Feb 1 06:16:25 2012 UTC (5 years, 7 months ago) by caltinay
Merged ripley rectangular domain into trunk.


Revision 3747 - Directory Listing
Modified Thu Dec 15 02:13:14 2011 UTC (5 years, 9 months ago) by gross
inconsistent notation fixed.

Revision 3675 - Directory Listing
Modified Thu Nov 17 00:53:38 2011 UTC (5 years, 10 months ago) by jfenwick
pasowrap joins the trunk.


Revision 3667 - Directory Listing
Modified Tue Nov 15 23:29:23 2011 UTC (5 years, 10 months ago) by gross
better consistence of script and notation

Revision 3666 - Directory Listing
Modified Tue Nov 15 23:10:20 2011 UTC (5 years, 10 months ago) by gross
fix for https://mantis.esscc.uq.edu.au/view.php?id=647

Revision 3644 - Directory Listing
Modified Thu Oct 27 06:42:56 2011 UTC (5 years, 10 months ago) by gross
hint to add surface items in pycad

Revision 3629 - Directory Listing
Modified Wed Oct 19 03:04:27 2011 UTC (5 years, 11 months ago) by gross
darcy example added

Revision 3625 - Directory Listing
Modified Thu Oct 13 01:54:27 2011 UTC (5 years, 11 months ago) by gross
missing argument in gmsh reader documentation added

Revision 3616 - Directory Listing
Modified Fri Sep 30 00:56:37 2011 UTC (5 years, 11 months ago) by jfenwick
Center a table that I noticed and use upquote package to stop LaTeX from
mucking about with ' in python code.

Fixes #632


Revision 3604 - Directory Listing
Modified Mon Sep 19 04:47:53 2011 UTC (6 years ago) by caltinay
Changed detection of pdflatex since some versions of scons require .ltx or
.latex file extensions when pdflatex is not available.
Also added cleanup of utest.sh and buildvars file.


Revision 3599 - Directory Listing
Modified Fri Sep 16 01:34:46 2011 UTC (6 years ago) by caltinay
Updated install guide to mention external CppUnit dependency for unit tests.


Revision 3595 - Directory Listing
Modified Thu Sep 15 05:56:47 2011 UTC (6 years ago) by caltinay
Skip some more gmsh-dependend tests if gmsh is not available.


Revision 3582 - Directory Listing
Modified Tue Sep 6 02:02:17 2011 UTC (6 years ago) by gross
some clarification of the documentation on the Stokes solver.

Revision 3573 - Directory Listing
Modified Fri Sep 2 05:51:02 2011 UTC (6 years ago) by jfenwick
Added more comprehensible doco about 3D interpolation.
Also fixed a bug but this may break code which previously used 3D interpolation.

This fixes mantis #581


Revision 3571 - Directory Listing
Modified Thu Sep 1 03:53:23 2011 UTC (6 years ago) by gross
LinearSolver option RILU has been removed from the documentation it is not supported yet.

Revision 3570 - Directory Listing
Modified Thu Sep 1 03:11:26 2011 UTC (6 years ago) by jfenwick
Fixed some bib entries, changed visit script in guide to use " instead of '.
Reworded a sentence.


Revision 3569 - Directory Listing
Modified Thu Sep 1 02:42:36 2011 UTC (6 years ago) by gross
Darcy flow solver and docu reviewed. Coupled solvers have been removed.


Revision 3568 - Directory Listing
Modified Tue Aug 30 08:23:24 2011 UTC (6 years ago) by gross
darcy flux documentation updated.

Revision 3567 - Directory Listing
Modified Tue Aug 30 07:55:02 2011 UTC (6 years ago) by gross
FIXME and TODO fixed.

Revision 3538 - Directory Listing
Modified Mon Jul 4 00:13:02 2011 UTC (6 years, 2 months ago) by jfenwick
Added paper with current dev team to the references section.


Revision 3502 - Directory Listing
Modified Thu Apr 28 05:06:24 2011 UTC (6 years, 4 months ago) by gross
Darcy flow solver is now supporting 4 solvers

Revision 3501 - Directory Listing
Modified Wed Apr 13 04:07:53 2011 UTC (6 years, 5 months ago) by gross


Revision 3463 - Directory Listing
Modified Mon Feb 7 02:09:57 2011 UTC (6 years, 7 months ago) by caltinay
Check for gmsh in main SConstruct file and skip tests that depend on it when
the executable is not found.


Revision 3457 - Directory Listing
Modified Thu Jan 27 01:38:17 2011 UTC (6 years, 7 months ago) by caltinay
Added missing cookbook figures from Anthony.


Revision 3454 - Directory Listing
Modified Tue Jan 25 04:00:29 2011 UTC (6 years, 7 months ago) by caltinay
Fixed some minor doxygen issues.


Revision 3452 - Directory Listing
Modified Tue Jan 25 01:53:57 2011 UTC (6 years, 7 months ago) by caltinay
Fixed building cookbook, including toc (scons scans for keywords in the tex
files but not in .cls as it seems).
Also fixed a few epydoc warnings and typos.



Revision 3448 - Directory Listing
Modified Fri Jan 21 04:38:54 2011 UTC (6 years, 8 months ago) by ahallam
Quick final changes to cookbook to accomodate example10c problem. 'So long and thanks for all the fish.'

Revision 3447 - Directory Listing
Modified Fri Jan 21 04:33:42 2011 UTC (6 years, 8 months ago) by ahallam
example10c removed from testing as it is not in the cookbook.

Revision 3439 - Directory Listing
Modified Fri Jan 14 00:04:01 2011 UTC (6 years, 8 months ago) by gross
some modifications to fix the cook examples runs for testing

Revision 3438 - Directory Listing
Modified Thu Jan 13 23:24:50 2011 UTC (6 years, 8 months ago) by gross
mesh size reduced

Revision 3430 - Directory Listing
Modified Thu Jan 6 09:09:19 2011 UTC (6 years, 8 months ago) by gross
import order is critical

Revision 3427 - Directory Listing
Modified Thu Jan 6 00:11:45 2011 UTC (6 years, 8 months ago) by ahallam
Missing script.

Revision 3426 - Directory Listing
Modified Wed Jan 5 02:51:35 2011 UTC (6 years, 8 months ago) by ahallam
Added new example tests.

Revision 3425 - Directory Listing
Modified Wed Jan 5 02:50:38 2011 UTC (6 years, 8 months ago) by ahallam
Added new example tests.

Revision 3410 - Directory Listing
Modified Thu Dec 9 07:02:52 2010 UTC (6 years, 9 months ago) by ahallam
Minor changes to cookbook, gravity example.

Revision 3409 - Directory Listing
Modified Thu Dec 9 07:01:23 2010 UTC (6 years, 9 months ago) by ahallam
minor changes to examples before holiday.

Revision 3406 - Directory Listing
Modified Wed Dec 8 01:09:37 2010 UTC (6 years, 9 months ago) by ahallam
Updates to cookbook documentation for release.

Revision 3405 - Directory Listing
Modified Wed Dec 8 01:09:06 2010 UTC (6 years, 9 months ago) by ahallam
Changes to example09 for memory footprint. One change too help wording in layer_cake function. example09b removed from testing. Not for impending release.

Revision 3402 - Directory Listing
Modified Tue Dec 7 07:36:12 2010 UTC (6 years, 9 months ago) by gross
AMG support now block size > 3 (requires clapack or MKL).

additional diagnostics for AMG 



Revision 3395 - Directory Listing
Modified Fri Dec 3 06:30:35 2010 UTC (6 years, 9 months ago) by gross
small correction

Revision 3392 - Directory Listing
Modified Thu Dec 2 03:26:29 2010 UTC (6 years, 9 months ago) by ahallam
Updates to cookbook. Includes new section on variable meshing. To be reviewed.

Revision 3390 - Directory Listing
Modified Thu Dec 2 00:34:37 2010 UTC (6 years, 9 months ago) by jfenwick
RandomData added


Revision 3389 - Directory Listing
Modified Wed Dec 1 23:03:35 2010 UTC (6 years, 9 months ago) by ahallam
Some changes to the cookbook examples. Starting Inversion experimentation.

Revision 3387 - Directory Listing
Modified Thu Nov 25 07:09:23 2010 UTC (6 years, 9 months ago) by caltinay
Fixed some annoying typos.


Revision 3386 - Directory Listing
Modified Thu Nov 25 05:05:50 2010 UTC (6 years, 9 months ago) by caltinay
scons choked on the newlines within the parameter list. Fixed.


Revision 3385 - Directory Listing
Modified Thu Nov 25 04:41:33 2010 UTC (6 years, 9 months ago) by ahallam
Updates to cookbook, something is wrong with the sconstruct though

Revision 3384 - Directory Listing
Modified Thu Nov 25 03:28:01 2010 UTC (6 years, 9 months ago) by ahallam
Cookbook lumping updates.

Revision 3383 - Directory Listing
Modified Thu Nov 25 02:17:51 2010 UTC (6 years, 9 months ago) by caltinay
Fixed some typos and added missing symlinks. 


Revision 3382 - Directory Listing
Modified Thu Nov 25 00:43:18 2010 UTC (6 years, 9 months ago) by jfenwick
I've added better credits for dev team.
There is a new page just before the contents page with current dev team 
and a more detailed list in the user guide appendix.

Please check this and let me know if you think there are errors or 
omissions.

Also fixed a typo.
Removed reference to python style files we no longer use from the 
license file.



Revision 3381 - Directory Listing
Modified Wed Nov 24 23:37:55 2010 UTC (6 years, 9 months ago) by ahallam
Proofing of lumping.tex

Revision 3380 - Directory Listing
Modified Wed Nov 24 05:03:25 2010 UTC (6 years, 9 months ago) by gross
update to change list

Revision 3379 - Directory Listing
Modified Wed Nov 24 04:48:49 2010 UTC (6 years, 9 months ago) by gross
some clarification on lumping

Revision 3374 - Directory Listing
Modified Tue Nov 23 00:30:20 2010 UTC (6 years, 9 months ago) by ahallam
Fixes to example scripts.

Revision 3373 - Directory Listing
Modified Tue Nov 23 00:29:07 2010 UTC (6 years, 9 months ago) by ahallam
New figures.

Revision 3372 - Directory Listing
Modified Mon Nov 22 23:10:03 2010 UTC (6 years, 9 months ago) by caltinay
Added missing import to fix unit test


Revision 3370 - Directory Listing
Modified Sun Nov 21 23:22:25 2010 UTC (6 years, 10 months ago) by ahallam
Rearranged figures for release.

Revision 3368 - Directory Listing
Modified Fri Nov 19 05:59:46 2010 UTC (6 years, 10 months ago) by jfenwick
3d interpolateTable support.
New more generic interface for table interpolation.
tests and doco updated

Revision 3367 - Directory Listing
Modified Fri Nov 19 02:07:25 2010 UTC (6 years, 10 months ago) by caltinay
added quick intro to visualization with VisIt and fixed a file reference.


Revision 3366 - Directory Listing
Modified Thu Nov 18 23:41:42 2010 UTC (6 years, 10 months ago) by caltinay
esys.weipa Python interface documentation.


Revision 3353 - Directory Listing
Modified Tue Nov 16 04:32:40 2010 UTC (6 years, 10 months ago) by gross
some clarification on AMG in the documentation

Revision 3349 - Directory Listing
Modified Mon Nov 15 05:09:56 2010 UTC (6 years, 10 months ago) by caltinay
escript now supports out-of-tree builds.
All build and test files are now created under a user-definable build_dir
directory.
This also fixes issue 291.
Removed most svn:ignore props since they are no longer required.


Revision 3348 - Directory Listing
Modified Fri Nov 12 05:55:50 2010 UTC (6 years, 10 months ago) by caltinay
Added weipa import statements to the relevant parts in user guide and cookbook.
Documented the deprecation of esys.escript.saveVTK in the changes chapter.


Revision 3346 - Directory Listing
Modified Fri Nov 12 01:19:02 2010 UTC (6 years, 10 months ago) by caltinay
Replaced usage of esys.escript.util.saveVTK by weipa.saveVTK in all python
scripts.


Revision 3343 - Directory Listing
Modified Wed Nov 10 02:01:29 2010 UTC (6 years, 10 months ago) by jfenwick
Rename users guide to user.pdf from guide.pdf to match the conventions 
we follow with the other files.

Corrected the description of Einstein convention from "convenient"
to "compact". 


Revision 3339 - Directory Listing
Modified Fri Nov 5 05:30:31 2010 UTC (6 years, 10 months ago) by jfenwick
Fixed more package clashing problems.
Package install.pdf not install.tex
Changed title on most documents to esys-Escript except for the cookbook coz I like ti that way.

Revision 3338 - Directory Listing
Modified Fri Nov 5 03:50:51 2010 UTC (6 years, 10 months ago) by jfenwick
Remove old name for man page to prevent clash with erlang.
Changed default library to link for boost to boost_python-mt



Revision 3337 - Directory Listing
Modified Fri Nov 5 03:20:19 2010 UTC (6 years, 10 months ago) by jfenwick
Work around weird scons behaviour


Revision 3336 - Directory Listing
Modified Fri Nov 5 00:28:44 2010 UTC (6 years, 10 months ago) by jfenwick
Fixed bib entry


Revision 3335 - Directory Listing
Modified Wed Nov 3 05:02:57 2010 UTC (6 years, 10 months ago) by jfenwick
Fix the launcher so that it can give an environment even if buildvars is not present.
Environment now includes scons for standalone builds.
Fixes and cleanup for the install documentation.
scons TEMPLATES updated to define the optionfile version by default.

...mumble
   finley no longer imports escript into the default namespace
...

Revision 3334 - Directory Listing
Modified Wed Nov 3 00:46:56 2010 UTC (6 years, 10 months ago) by jfenwick
Added 3.2 to changes page

Revision 3331 - Directory Listing
Modified Mon Nov 1 05:21:18 2010 UTC (6 years, 10 months ago) by caltinay
Appendix done. Fixed some overfull hboxes.


Revision 3330 - Directory Listing
Modified Mon Nov 1 04:29:09 2010 UTC (6 years, 10 months ago) by caltinay
Finished user's guide chapters up to Appendix.


Revision 3329 - Directory Listing
Modified Fri Oct 29 05:55:55 2010 UTC (6 years, 10 months ago) by caltinay
Faultsystems2d. not finished yet.


Revision 3328 - Directory Listing
Modified Fri Oct 29 02:21:42 2010 UTC (6 years, 10 months ago) by caltinay
Fixed script filename


Revision 3326 - Directory Listing
Modified Fri Oct 29 00:45:32 2010 UTC (6 years, 10 months ago) by caltinay
6.2 Darcy Flux. Note that I commented the gravity flow subsection since it's
not written.


Revision 3325 - Directory Listing
Modified Fri Oct 29 00:30:51 2010 UTC (6 years, 10 months ago) by caltinay
Section 6.1.


Revision 3324 - Directory Listing
Modified Thu Oct 28 23:43:09 2010 UTC (6 years, 10 months ago) by caltinay
Finished pycad chapter 5, regenerated eps files


Revision 3322 - Directory Listing
Modified Thu Oct 28 05:26:37 2010 UTC (6 years, 10 months ago) by jfenwick
Adapt install guide to new style.
Simplify package building scripts to autodetect necessary info and build control file automatically.


Revision 3321 - Directory Listing
Modified Thu Oct 28 05:02:41 2010 UTC (6 years, 10 months ago) by gross
a problem with surface orientation fixed.

Revision 3316 - Directory Listing
Modified Wed Oct 27 01:43:21 2010 UTC (6 years, 10 months ago) by caltinay
Finished Chapter 4, added missing bibliography entries for Trilinos and SuperLU


Revision 3311 - Directory Listing
Modified Tue Oct 26 05:43:25 2010 UTC (6 years, 10 months ago) by jfenwick
Added raggedbottom to last page before appendix.
Condensed the latex picture figures a bit


Revision 3310 - Directory Listing
Modified Tue Oct 26 03:58:17 2010 UTC (6 years, 10 months ago) by jfenwick
Fixed some pdf bookmarks and added the index package


Revision 3309 - Directory Listing
Modified Tue Oct 26 03:56:26 2010 UTC (6 years, 10 months ago) by caltinay
Updated escript section with added DataManager reference.


Revision 3308 - Directory Listing
Modified Tue Oct 26 03:24:54 2010 UTC (6 years, 10 months ago) by jfenwick
Moved listing and class up a level.
Removed hackscore from cookbook.
Made cookbook use the new stuff - removed old stuff

Revision 3307 - Directory Listing
Modified Tue Oct 26 01:19:19 2010 UTC (6 years, 10 months ago) by caltinay
Put index back in and added link to index and biblio to the TOC.


Revision 3306 - Directory Listing
Modified Mon Oct 25 05:09:13 2010 UTC (6 years, 10 months ago) by caltinay
Commented declaremodule and modulesynopsis.


Revision 3305 - Directory Listing
Modified Mon Oct 25 05:04:22 2010 UTC (6 years, 10 months ago) by jfenwick
Fancy shuffling


Revision 3304 - Directory Listing
Modified Mon Oct 25 04:43:48 2010 UTC (6 years, 10 months ago) by caltinay
Disabled building html user's guide - it doesn't read the class file properly
and the PDF now supports links.


Revision 3302 - Directory Listing
Modified Mon Oct 25 01:50:07 2010 UTC (6 years, 10 months ago) by jfenwick
Fixed appendix so hyperref generates links properly

Revision 3301 - Directory Listing
Modified Mon Oct 25 01:27:54 2010 UTC (6 years, 10 months ago) by jfenwick
Modified layout of descriptions.
Fixed some overfull hboxes

Revision 3300 - Directory Listing
Modified Mon Oct 25 00:22:14 2010 UTC (6 years, 10 months ago) by jfenwick
Some text fixes


Revision 3298 - Directory Listing
Modified Fri Oct 22 06:49:04 2010 UTC (6 years, 11 months ago) by caltinay


Revision 3297 - Directory Listing
Modified Fri Oct 22 05:47:37 2010 UTC (6 years, 11 months ago) by caltinay
small fix


Revision 3296 - Directory Listing
Modified Fri Oct 22 02:53:24 2010 UTC (6 years, 11 months ago) by caltinay
hackscore removal.


Revision 3295 - Directory Listing
Modified Fri Oct 22 01:56:02 2010 UTC (6 years, 11 months ago) by jfenwick


Revision 3294 - Directory Listing
Modified Fri Oct 22 01:15:56 2010 UTC (6 years, 11 months ago) by jfenwick
Tweaks


Revision 3293 - Directory Listing
Modified Thu Oct 21 23:18:32 2010 UTC (6 years, 11 months ago) by caltinay
user's guide builds again with new class file. The cleanup can commence...


Revision 3292 - Directory Listing
Modified Thu Oct 21 05:02:49 2010 UTC (6 years, 11 months ago) by jfenwick
Adding the class file


Revision 3291 - Directory Listing
Modified Thu Oct 21 00:37:42 2010 UTC (6 years, 11 months ago) by caltinay
Work on user's guide up to section 3.2 (exclusive), including some text on
new DataManager class.
Also reworked a couple of images.
This should be the last commit of the guide before changes to the latex class.


Revision 3288 - Directory Listing
Modified Tue Oct 19 01:08:31 2010 UTC (6 years, 11 months ago) by caltinay
Corrections to user guide sections 1.5 and 1.6.
Converted backgrounds of the very complex stokes flow eps files by raster
images leaving the vectors untouched so the change is barely visible but
makes loading the PDF page some orders of magnitude faster.


Revision 3282 - Directory Listing
Modified Fri Oct 15 06:59:32 2010 UTC (6 years, 11 months ago) by caltinay
Don't build guide_pdf when only guide_html was requested.


Revision 3281 - Directory Listing
Modified Fri Oct 15 06:52:34 2010 UTC (6 years, 11 months ago) by caltinay
latex2html doesn't like './' in graphicspath, so removed it.


Revision 3280 - Directory Listing
Modified Fri Oct 15 05:11:11 2010 UTC (6 years, 11 months ago) by caltinay
Corrections to 1.4 of the user's guide.


Revision 3279 - Directory Listing
Modified Fri Oct 15 04:02:06 2010 UTC (6 years, 11 months ago) by caltinay
Some corrections to 1.3 of user's guide and defined graphicspath globally.


Revision 3278 - Directory Listing
Modified Fri Oct 15 02:00:45 2010 UTC (6 years, 11 months ago) by caltinay
Updated section 1.2 of user's guide.


Revision 3277 - Directory Listing
Modified Fri Oct 15 01:06:24 2010 UTC (6 years, 11 months ago) by caltinay
This should keep scons happy on systems without pdflatex issuing a warning
to the user. Also updated all other doc sconscript files to use a global
release_dir prefix so we can easily move the files somewhere else if req'd.


Revision 3274 - Directory Listing
Modified Thu Oct 14 06:14:30 2010 UTC (6 years, 11 months ago) by caltinay
Some initial corrections to the user's guide.


Revision 3273 - Directory Listing
Modified Thu Oct 14 05:44:08 2010 UTC (6 years, 11 months ago) by caltinay
Fixed guide_html dependencies so the pages are really rebuilt when source
files change.


Revision 3272 - Directory Listing
Modified Thu Oct 14 04:02:06 2010 UTC (6 years, 11 months ago) by caltinay
Similar to last commit but for cookbook. Can't test since cookbook doesn't
build at the moment.


Revision 3271 - Directory Listing
Modified Thu Oct 14 02:16:00 2010 UTC (6 years, 11 months ago) by caltinay
-use existing scons pdflatex target for user's guide
-create temporary files in build directory rather than source directory
-make latex less verbose if verbosity option is off
This fixes #291 for user's guide.


Revision 3265 - Directory Listing
Modified Tue Oct 12 04:42:03 2010 UTC (6 years, 11 months ago) by caltinay
Updated relevant sections in install guide to reflect scons option changes.
Standalone section needs to be updated before the release.


Revision 3260 - Directory Listing
Modified Mon Oct 11 03:41:35 2010 UTC (6 years, 11 months ago) by jfenwick
Removing dead files


Revision 3259 - Directory Listing
Modified Mon Oct 11 01:48:14 2010 UTC (6 years, 11 months ago) by jfenwick
Merging dudley and scons updates from branches


Revision 3233 - Directory Listing
Modified Mon Oct 4 00:54:26 2010 UTC (6 years, 11 months ago) by jfenwick
Fixed build error


Revision 3232 - Directory Listing
Modified Fri Oct 1 02:08:38 2010 UTC (6 years, 11 months ago) by ahallam
Updates to cookbook, new chapter DC Resis and IP. Using new packages hyperref, natbib

Revision 3208 - Directory Listing
Modified Sun Sep 26 23:31:17 2010 UTC (6 years, 11 months ago) by jfenwick
List tests as not working with MPI


Revision 3195 - Directory Listing
Modified Wed Sep 22 00:28:04 2010 UTC (7 years ago) by ahallam
Shortened runtime of cookbook examples to aid testing.

Revision 3190 - Directory Listing
Modified Thu Sep 16 23:29:09 2010 UTC (7 years ago) by jfenwick
Disable some cookbook examples until we can get issues sorted out


Revision 3182 - Directory Listing
Modified Tue Sep 14 06:05:55 2010 UTC (7 years ago) by jfenwick
Temporarily removing example8c from unit testing.
It seems to lock the test - or it runs for rediculous timeframes.


Revision 3179 - Directory Listing
Modified Tue Sep 14 01:55:24 2010 UTC (7 years ago) by gross
typo fixed

Revision 3168 - Directory Listing
Modified Wed Sep 8 23:01:25 2010 UTC (7 years ago) by ahallam
Missing *.png

Revision 3166 - Directory Listing
Modified Tue Sep 7 23:47:06 2010 UTC (7 years ago) by ahallam
Fix doc build error. I will add the figure when I come in tomorrow and turn Darra on.


Revision 3153 - Directory Listing
Modified Sun Sep 5 01:31:49 2010 UTC (7 years ago) by ahallam
Updates to cookbook. Fixes to SWP and new Gravitational Potential

Revision 3148 - Directory Listing
Modified Fri Sep 3 02:09:47 2010 UTC (7 years ago) by jfenwick
Another attempt to patch the X issue


Revision 3142 - Directory Listing
Modified Thu Sep 2 23:58:47 2010 UTC (7 years ago) by jfenwick
Trying to fix X problem


Revision 3135 - Directory Listing
Modified Thu Sep 2 03:28:39 2010 UTC (7 years ago) by ahallam
Updates to cookbook scripts. Gravitation Examples.

Revision 3099 - Directory Listing
Modified Sun Aug 22 04:35:15 2010 UTC (7 years, 1 month ago) by ahallam
Gravitational Potential Example- Needs some tuning.

Revision 3094 - Directory Listing
Modified Fri Aug 13 08:38:06 2010 UTC (7 years, 1 month ago) by gross
The MPI and sequational GAUSS_SEIDEL have been merged.
The couring and main diagonal pointer is now manged by the patternm which means that they are calculated once only even if the preconditioner is deleted.




Revision 3089 - Directory Listing
Modified Mon Aug 9 07:20:58 2010 UTC (7 years, 1 month ago) by ahallam
Updates to example scripts - should now be working except for example09b.py which needs more memory.

Revision 3083 - Directory Listing
Modified Tue Aug 3 06:34:35 2010 UTC (7 years, 1 month ago) by caltinay
Updated some svn:ignore props.


Revision 3078 - Directory Listing
Modified Tue Aug 3 03:12:16 2010 UTC (7 years, 1 month ago) by jfenwick
Switched the build_dir keyword param to variant_dir.
Should fix issue 525.



Revision 3075 - Directory Listing
Modified Wed Jul 28 02:51:20 2010 UTC (7 years, 1 month ago) by ahallam
Updates to cookbook example. Lumping turned off for order 2 models until bug resolves.

Revision 3073 - Directory Listing
Modified Mon Jul 26 06:10:50 2010 UTC (7 years, 1 month ago) by jfenwick
Rename files to fix build problem


Revision 3072 - Directory Listing
Modified Fri Jul 23 07:10:03 2010 UTC (7 years, 2 months ago) by gross
wrong file

Revision 3071 - Directory Listing
Modified Wed Jul 21 05:37:30 2010 UTC (7 years, 2 months ago) by gross
new darcy flux

Revision 3070 - Directory Listing
Modified Wed Jul 21 04:09:58 2010 UTC (7 years, 2 months ago) by jfenwick
Fixord


Revision 3069 - Directory Listing
Modified Wed Jul 21 03:24:48 2010 UTC (7 years, 2 months ago) by ahallam
Updates to layer cake and cookbook as well as examples.

Revision 3068 - Directory Listing
Modified Mon Jul 19 00:43:31 2010 UTC (7 years, 2 months ago) by ahallam
Missing Figures

Revision 3067 - Directory Listing
Modified Mon Jul 19 00:40:37 2010 UTC (7 years, 2 months ago) by ahallam
Cookbook Updates - Chapter 9 - New figures.

Revision 3066 - Directory Listing
Modified Sun Jul 18 23:32:07 2010 UTC (7 years, 2 months ago) by ahallam
Missing Picture causing errors.

Revision 3065 - Directory Listing
Modified Thu Jul 15 02:59:27 2010 UTC (7 years, 2 months ago) by ahallam
Updates to newer examples.

Revision 3064 - Directory Listing
Modified Thu Jul 15 02:58:23 2010 UTC (7 years, 2 months ago) by ahallam
Updates to cookbook with fixed images and new chaper for 3d seismic model. New chapter is now added.

Revision 3063 - Directory Listing
Modified Thu Jul 15 02:57:46 2010 UTC (7 years, 2 months ago) by ahallam
Updates to cookbook with fixed images and new chaper for 3d seismic model.

Revision 3058 - Directory Listing
Modified Tue Jul 6 02:13:14 2010 UTC (7 years, 2 months ago) by ahallam


Revision 3057 - Directory Listing
Modified Tue Jul 6 02:10:59 2010 UTC (7 years, 2 months ago) by ahallam


Revision 3055 - Directory Listing
Modified Sun Jul 4 21:52:36 2010 UTC (7 years, 2 months ago) by ahallam
3d wave equation and ABC

Revision 3054 - Directory Listing
Modified Wed Jun 30 02:22:25 2010 UTC (7 years, 2 months ago) by ahallam
Missing Figures...

Revision 3053 - Directory Listing
Modified Tue Jun 29 01:31:31 2010 UTC (7 years, 2 months ago) by jfenwick
Fixes to deal with new savanna configuration.
Blocking out missing images.


Revision 3029 - Directory Listing
Modified Fri May 21 02:01:37 2010 UTC (7 years, 4 months ago) by ahallam
small updates and work on seismic code

Revision 3025 - Directory Listing
Modified Thu May 6 01:20:46 2010 UTC (7 years, 4 months ago) by ahallam
Updates to wave equation examples. Pressure wave examples should be completed now. Working on seismic wave examples. Cookbook chapter for pressure wave examples also added.

Revision 3004 - Directory Listing
Modified Wed Apr 14 05:27:30 2010 UTC (7 years, 5 months ago) by ahallam
Sampling theorem, stability requirements, Laplacian discussion, Pressure wave PDE

Revision 3003 - Directory Listing
Modified Wed Apr 7 02:29:57 2010 UTC (7 years, 5 months ago) by ahallam
Pressure wave working, accelleration example, new entries to cookbook for example 7.

Revision 3002 - Directory Listing
Modified Wed Apr 7 02:25:45 2010 UTC (7 years, 5 months ago) by gross
gmsh now supports the Mesh.SubdivisionAlgorithm and Mesh.Algorithm3D option.
The Mesh.Algorithm, Mesh.Smoothing, Mesh.Optimization options are now set in the
.geo file rather than in the command line.






Revision 3001 - Directory Listing
Modified Wed Mar 31 04:29:10 2010 UTC (7 years, 5 months ago) by ahallam
Pressue wave problem, looking at sampling theorem, and Crank-Nicolson

Revision 2982 - Directory Listing
Modified Wed Mar 10 04:27:47 2010 UTC (7 years, 6 months ago) by caltinay
Some minor corrections to the cookbook (mainly word repetitions and typos).


Revision 2980 - Directory Listing
Modified Tue Mar 9 03:50:58 2010 UTC (7 years, 6 months ago) by artak
minor change to fix latest bug

Revision 2979 - Directory Listing
Modified Tue Mar 9 02:54:32 2010 UTC (7 years, 6 months ago) by ahallam
cookbook review final final 3.1 - artak and tony corrections

Revision 2978 - Directory Listing
Modified Tue Mar 9 02:11:07 2010 UTC (7 years, 6 months ago) by artak
minor

Revision 2977 - Directory Listing
Modified Tue Mar 9 00:33:28 2010 UTC (7 years, 6 months ago) by ahallam
cookbook review final 3.1

Revision 2976 - Directory Listing
Modified Mon Mar 8 01:18:33 2010 UTC (7 years, 6 months ago) by artak
Lame equation is corrected. Options for using smoother in AMG is added. A book on AMG is cited for standard coarsening. 

Revision 2975 - Directory Listing
Modified Thu Mar 4 05:44:12 2010 UTC (7 years, 6 months ago) by ahallam
Cookbook modifications Review -> Not quite finished yet.
New figure.

Revision 2974 - Directory Listing
Modified Thu Mar 4 03:09:35 2010 UTC (7 years, 6 months ago) by artak
forgot to skip example06.py as well

Revision 2973 - Directory Listing
Modified Thu Mar 4 03:07:22 2010 UTC (7 years, 6 months ago) by artak
example05c.py is not tested if matplotlib library version is too old, where quiver() does not support angle parameter.

Revision 2972 - Directory Listing
Modified Thu Mar 4 01:33:38 2010 UTC (7 years, 6 months ago) by artak
DONE. Einstain Summation Convention (ESC, what an irony, reminds me ESC button) is removed from cookbook as it is not used anywhere in the cookbook.

Revision 2971 - Directory Listing
Modified Wed Mar 3 23:19:00 2010 UTC (7 years, 6 months ago) by jfenwick
I hate voodoo.
Putting pdfinfo directive in two places in the cookbook header so that
both versions of evince get the right title.


Revision 2969 - Directory Listing
Modified Wed Mar 3 04:27:00 2010 UTC (7 years, 6 months ago) by artak
reached Chapter 4

Revision 2964 - Directory Listing
Modified Wed Mar 3 01:21:09 2010 UTC (7 years, 6 months ago) by artak
up to Chapter 3

Revision 2963 - Directory Listing
Modified Wed Mar 3 01:10:11 2010 UTC (7 years, 6 months ago) by artak
up to section 2.1.9

Revision 2961 - Directory Listing
Modified Wed Mar 3 00:56:59 2010 UTC (7 years, 6 months ago) by jfenwick
Hacking cookbook


Revision 2960 - Directory Listing
Modified Tue Mar 2 07:54:11 2010 UTC (7 years, 6 months ago) by gross
new DarcyFlux solver

Revision 2959 - Directory Listing
Modified Tue Mar 2 06:27:17 2010 UTC (7 years, 6 months ago) by artak
more corrections on exmaple 1, up to section 2.1.5

Revision 2958 - Directory Listing
Modified Tue Mar 2 06:00:39 2010 UTC (7 years, 6 months ago) by artak
more corrections on exmaple 1, up to section 2.1.5

Revision 2957 - Directory Listing
Modified Tue Mar 2 01:28:19 2010 UTC (7 years, 6 months ago) by artak
more corrections

Revision 2956 - Directory Listing
Modified Mon Mar 1 01:31:59 2010 UTC (7 years, 6 months ago) by artak
First corrections: NEEDS MORE AND MORE...

Revision 2955 - Directory Listing
Modified Mon Mar 1 00:54:37 2010 UTC (7 years, 6 months ago) by jfenwick
Fix hackscore error


Revision 2953 - Directory Listing
Modified Thu Feb 25 10:00:23 2010 UTC (7 years, 6 months ago) by gross
final touch to the naming in the cookbook

Revision 2952 - Directory Listing
Modified Thu Feb 25 09:52:10 2010 UTC (7 years, 6 months ago) by gross
even more renaming in the cookbook

Revision 2951 - Directory Listing
Modified Thu Feb 25 07:43:40 2010 UTC (7 years, 6 months ago) by gross
more renaming in the cookbook

Revision 2950 - Directory Listing
Modified Thu Feb 25 07:33:16 2010 UTC (7 years, 6 months ago) by gross
more renames in the cookbook.

Revision 2949 - Directory Listing
Modified Thu Feb 25 05:23:11 2010 UTC (7 years, 6 months ago) by gross
renaming examples part 1

Revision 2948 - Directory Listing
Modified Thu Feb 25 04:54:30 2010 UTC (7 years, 6 months ago) by gross
a new almost completed version of the cookbook

Revision 2944 - Directory Listing
Modified Tue Feb 23 23:51:20 2010 UTC (7 years, 6 months ago) by jfenwick
Fix latex markup in pdf title.
It turns out \pdfinfo must come after \maketitle if you don't want the
latex version of the title.

This behaviour does not happen in evince 2.22.2 (standard in lenny) but does
happen in more recent versions.



Revision 2943 - Directory Listing
Modified Tue Feb 23 01:49:27 2010 UTC (7 years, 6 months ago) by artak
VTK as a required package is removed from cookbook

Revision 2942 - Directory Listing
Modified Mon Feb 22 05:43:44 2010 UTC (7 years, 6 months ago) by caltinay
Fixed a small typo in the cookbook abstract.


Revision 2936 - Directory Listing
Modified Mon Feb 15 03:29:53 2010 UTC (7 years, 7 months ago) by gross
some clarification added.

Revision 2935 - Directory Listing
Modified Mon Feb 15 03:15:59 2010 UTC (7 years, 7 months ago) by gross
pycad support 3D transfinite meshing now.

Revision 2931 - Directory Listing
Modified Mon Feb 8 06:45:41 2010 UTC (7 years, 7 months ago) by gross
more changes on the cookbook

Revision 2923 - Directory Listing
Modified Thu Feb 4 04:05:36 2010 UTC (7 years, 7 months ago) by jfenwick
Bringing non-release specific things from stage3.1 r2922 back to trunk


Revision 2914 - Directory Listing
Modified Wed Feb 3 05:38:12 2010 UTC (7 years, 7 months ago) by gross
missing import added.

Revision 2913 - Directory Listing
Modified Wed Feb 3 04:30:46 2010 UTC (7 years, 7 months ago) by gross
type fixed

Revision 2911 - Directory Listing
Modified Wed Feb 3 03:30:40 2010 UTC (7 years, 7 months ago) by jfenwick
Changed name of launcher and rotated figure correctly.


Revision 2907 - Directory Listing
Modified Wed Feb 3 01:39:15 2010 UTC (7 years, 7 months ago) by gross
needdirs replaced by mkDir from esys.escript

Revision 2906 - Directory Listing
Modified Tue Feb 2 05:26:03 2010 UTC (7 years, 7 months ago) by gross
some minor :-) fix.

Revision 2905 - Directory Listing
Modified Tue Feb 2 04:26:42 2010 UTC (7 years, 7 months ago) by gross
some missing files.

Revision 2904 - Directory Listing
Modified Tue Feb 2 04:21:52 2010 UTC (7 years, 7 months ago) by gross
more revision on cookbook: example 1 and 2 have been swapped.

Revision 2881 - Directory Listing
Modified Thu Jan 28 02:03:15 2010 UTC (7 years, 7 months ago) by jfenwick
Don't panic.
Updating copyright stamps


Revision 2878 - Directory Listing
Modified Thu Jan 28 00:59:30 2010 UTC (7 years, 7 months ago) by gross
more work on cookbook review

Revision 2872 - Directory Listing
Modified Wed Jan 27 00:59:58 2010 UTC (7 years, 7 months ago) by artak
/home/ changed to /Users/ for mac

Revision 2870 - Directory Listing
Modified Mon Jan 25 08:34:15 2010 UTC (7 years, 7 months ago) by gross
more review on the cookbook.

Revision 2868 - Directory Listing
Modified Mon Jan 25 04:44:45 2010 UTC (7 years, 7 months ago) by artak
Some fixes for 3.1 release. Notes about Snow Leopard is added and installing from ports removed.

Revision 2867 - Directory Listing
Modified Fri Jan 22 06:28:02 2010 UTC (7 years, 8 months ago) by gross
now option -i is used if no script is given

Revision 2864 - Directory Listing
Modified Fri Jan 22 03:09:55 2010 UTC (7 years, 8 months ago) by gross
projector added to users guide

Revision 2862 - Directory Listing
Modified Thu Jan 21 04:45:39 2010 UTC (7 years, 8 months ago) by gross
more review in the cookbook

Revision 2861 - Directory Listing
Modified Wed Jan 20 02:47:42 2010 UTC (7 years, 8 months ago) by gross
some modification to the cookbook

Revision 2851 - Directory Listing
Modified Fri Jan 15 07:37:47 2010 UTC (7 years, 8 months ago) by gross
typos fixed.


Revision 2843 - Directory Listing
Modified Thu Jan 14 05:51:28 2010 UTC (7 years, 8 months ago) by gross
new compressible solver

Revision 2829 - Directory Listing
Modified Wed Jan 6 02:51:31 2010 UTC (7 years, 8 months ago) by ahallam
minor updates to cookbook

Revision 2801 - Directory Listing
Modified Thu Dec 3 01:45:48 2009 UTC (7 years, 9 months ago) by ahallam
Final updates to first 3 chapters of cookbook before moving on to linear elastic wave equation examples.

Revision 2800 - Directory Listing
Modified Thu Dec 3 01:45:12 2009 UTC (7 years, 9 months ago) by ahallam
Getting rid of unneeded directories

Revision 2793 - Directory Listing
Modified Tue Dec 1 06:10:10 2009 UTC (7 years, 9 months ago) by gross
some new util functions

Revision 2781 - Directory Listing
Modified Thu Nov 26 04:12:11 2009 UTC (7 years, 9 months ago) by jfenwick
Some additional info from Thomas

Revision 2780 - Directory Listing
Modified Thu Nov 26 03:54:24 2009 UTC (7 years, 9 months ago) by jfenwick
Put the windows instructions back in.
Put more detail in the MPI hints.

Revision 2776 - Directory Listing
Modified Wed Nov 25 23:41:16 2009 UTC (7 years, 9 months ago) by jfenwick
Switching tests which read gmsh to not run under MPI


Revision 2775 - Directory Listing
Modified Wed Nov 25 05:01:43 2009 UTC (7 years, 9 months ago) by ahallam
minor updates to cookbook; new python syntax highlighting

Revision 2772 - Directory Listing
Modified Wed Nov 25 02:02:50 2009 UTC (7 years, 9 months ago) by ahallam
Fixed auto build error for heatrefraction_mesher002.py

Added clear figure line for run_heatrefraction.py process.

Revision 2766 - Directory Listing
Modified Mon Nov 23 05:10:53 2009 UTC (7 years, 9 months ago) by jfenwick
inf, sup and Lsup now correctly handle +-infinity.
They also will return NaN if any part of their input is NaN.

This will break unit tests since it exposes the hidden bug (#447 in mantis)

This code relies on the ability to test for NaNs.
To do this it makes use of macros and functions from C99.
If you do not have a C99 compiler, then you will probably get the old behaviour.
That is, you won't know when you have NaNs.


Also did minor tweak to saveDataCSV doco.

Revision 2758 - Directory Listing
Modified Thu Nov 19 04:21:55 2009 UTC (7 years, 10 months ago) by caltinay
Added missing imports. all_tests still fails though due to other problems.


Revision 2748 - Directory Listing
Modified Tue Nov 17 07:32:59 2009 UTC (7 years, 10 months ago) by gross
Macro elements are implemented now. VTK writer for macro elements still needs testing.

Revision 2742 - Directory Listing
Modified Thu Nov 12 06:03:37 2009 UTC (7 years, 10 months ago) by jfenwick
Merging changes from the lapack branch.

The inverse() operation has been moved into c++. [No lazy support for this operation yet.]
Optional Lapack support has been added for matrices larger than 3x3. 
service0 is set to use mkl_lapack.




Revision 2738 - Directory Listing
Modified Fri Nov 6 05:33:13 2009 UTC (7 years, 10 months ago) by jfenwick
Taipan and DataVector use size_type (currently long) internally to talk 
about sizes.
[A lot more work needs to be done on this].
Exceptions now give nicer messages and output the problematic numbers.

Some minor doco errors fixed.

escript.util.mkDir
Now checks to see if the pathname already exists as a non-directory.
On suggestion from slanger it now calls makedirs.




Revision 2736 - Directory Listing
Modified Mon Nov 2 04:15:27 2009 UTC (7 years, 10 months ago) by caltinay
Fixed a couple of typos.


Revision 2722 - Directory Listing
Modified Fri Oct 16 06:45:01 2009 UTC (7 years, 11 months ago) by gross
First steps towards macro elements. at the monent a  macro element is identical to its counterpart of 2nd order.





Revision 2719 - Directory Listing
Modified Wed Oct 14 06:38:03 2009 UTC (7 years, 11 months ago) by gross
a new Stokes solver added

Revision 2718 - Directory Listing
Modified Wed Oct 14 04:03:27 2009 UTC (7 years, 11 months ago) by gross
syntax errors fixed.

Revision 2717 - Directory Listing
Modified Wed Oct 14 03:41:20 2009 UTC (7 years, 11 months ago) by gross
implements https://mantis.esscc.uq.edu.au/view.php?id=426

Revision 2706 - Directory Listing
Modified Fri Oct 2 02:15:04 2009 UTC (7 years, 11 months ago) by jfenwick
Perhaps this will stop the cookbook from hating me.



Revision 2698 - Directory Listing
Modified Wed Sep 30 01:46:31 2009 UTC (7 years, 11 months ago) by jfenwick
Removing extension from some image filenames


Revision 2697 - Directory Listing
Modified Wed Sep 30 01:29:22 2009 UTC (7 years, 11 months ago) by jfenwick
Trying to get cookbook scripts passing.
Split cblib in two to avoid importing pylab in scripts which
don't otheriwse need it.



Revision 2695 - Directory Listing
Modified Tue Sep 29 06:29:12 2009 UTC (7 years, 11 months ago) by gross
pycad passes on more infromation from gmsh now.

Revision 2694 - Directory Listing
Modified Tue Sep 29 06:00:44 2009 UTC (7 years, 11 months ago) by gross
some hint on how to access gmsh error messages added.

Revision 2690 - Directory Listing
Modified Tue Sep 29 05:23:41 2009 UTC (7 years, 11 months ago) by gross
some description on gmsh reader added.

Revision 2685 - Directory Listing
Modified Tue Sep 29 02:22:30 2009 UTC (7 years, 11 months ago) by gross
these files are not needed

Revision 2684 - Directory Listing
Modified Tue Sep 29 02:21:11 2009 UTC (7 years, 11 months ago) by gross
added missing file

Revision 2683 - Directory Listing
Modified Tue Sep 29 02:20:22 2009 UTC (7 years, 11 months ago) by gross
documentation for pycad added.

Revision 2681 - Directory Listing
Modified Thu Sep 24 03:04:04 2009 UTC (7 years, 11 months ago) by ahallam
proof reading and review of cookbook, minor changes only + updated depth profiles to cb from last week

Revision 2677 - Directory Listing
Modified Tue Sep 22 00:48:00 2009 UTC (8 years ago) by jfenwick
Removed stuff in user guide about needing to make table larger to allow
boundary points.
The table interpolation is now OMP parallel.



Revision 2676 - Directory Listing
Modified Mon Sep 21 08:06:37 2009 UTC (8 years ago) by gross
FaultSystem: MaxValue and MinValue return now a Locator. This makes it possible to extract values of from other data objects at the location of the min/max value

Revision 2675 - Directory Listing
Modified Mon Sep 21 02:32:17 2009 UTC (8 years ago) by gross
getMinValue added to the fault system.

Revision 2674 - Directory Listing
Modified Mon Sep 21 00:37:18 2009 UTC (8 years ago) by jfenwick
Base matplotlib tests on version number.
This will stop the Mac trying to run some tests it can't execute.


Revision 2672 - Directory Listing
Modified Fri Sep 18 01:46:47 2009 UTC (8 years ago) by ahallam
Heat refraction updates : alex's downhole profiles

Revision 2668 - Directory Listing
Modified Thu Sep 17 04:04:09 2009 UTC (8 years ago) by gross
some clarification in the table interpolation

Revision 2667 - Directory Listing
Modified Thu Sep 17 01:49:11 2009 UTC (8 years ago) by jfenwick
Renamed the main cookbook tex file to match our convention.
Replaced doc/cookbook/figures/heatrefraction002contqu.pdf with
a version which is actually pdf. However it needs to be regnerated since
it it sideways.

The examples have had their copyright notices fixed (dates were too early).
sb2.py has been removed since it uses pyvisi.

scons will now build the cookbook as parts of a docs build.
Also in reposnse to :
scons cookbook_pdf



Revision 2663 - Directory Listing
Modified Tue Sep 15 06:04:44 2009 UTC (8 years ago) by gross
finally there is a 3D version for the fault system class

Revision 2658 - Directory Listing
Modified Thu Sep 10 02:58:44 2009 UTC (8 years ago) by ahallam
Updates to all files scripts to support MPI testing proceedure. Updates to cookbook, new section on functino spaces/domains (needs work). Finalising first 3 chapters for editing.

Revision 2657 - Directory Listing
Modified Thu Sep 10 00:58:19 2009 UTC (8 years ago) by jfenwick
Fixed some spelling errors.
Added text about parallel vis.


Revision 2656 - Directory Listing
Modified Wed Sep 9 23:47:10 2009 UTC (8 years ago) by jfenwick
Fixing doco compile bug


Revision 2655 - Directory Listing
Modified Tue Sep 8 23:31:32 2009 UTC (8 years ago) by gross
a comma is missing.

Revision 2654 - Directory Listing
Modified Tue Sep 8 07:11:12 2009 UTC (8 years ago) by gross
2D fault systems are now working. 3D still needs work.

Revision 2651 - Directory Listing
Modified Mon Sep 7 03:39:45 2009 UTC (8 years ago) by jfenwick
Fixed latex compile error.
Fixed some overful hboxes


Revision 2648 - Directory Listing
Modified Mon Sep 7 00:06:15 2009 UTC (8 years ago) by jfenwick
ecording some changes related to Anthony's cookbook.
These tests still do not run.

test_heatref.py is the current problem.
Current problems include:
undefined symbols
a dependence on X somehow.

I've already addressed the matplotlib X thing somewhere else.
Find and apply.



Revision 2647 - Directory Listing
Modified Fri Sep 4 05:25:25 2009 UTC (8 years ago) by gross
fault system add. There is still an example for the usage missing.

Revision 2646 - Directory Listing
Modified Fri Sep 4 00:13:00 2009 UTC (8 years ago) by jfenwick
Unit tests and user doco for interpolation and saveCSV

Revision 2645 - Directory Listing
Modified Thu Sep 3 02:20:33 2009 UTC (8 years ago) by ahallam
More revisions to cookbook, fixed cblib.py for Scons, new figures.

Revision 2636 - Directory Listing
Modified Thu Aug 27 05:26:42 2009 UTC (8 years ago) by jfenwick
Disabling cookbook example checks until we can fix them.


Revision 2634 - Directory Listing
Modified Thu Aug 27 04:03:32 2009 UTC (8 years ago) by ahallam
Updates to cookbook. Updates to scripts. Updates to figures. Working examples added to SCons. Data folder structure included minus data. More folder rejigging.

Revision 2633 - Directory Listing
Modified Wed Aug 26 22:21:52 2009 UTC (8 years ago) by ahallam
Sorry second regigging

Revision 2632 - Directory Listing
Modified Wed Aug 26 22:18:19 2009 UTC (8 years ago) by ahallam
Regigger of cookbook directory structure. Examlples->examples/cookbook TEXT->doc/cookbook Figures-> doc/cookbook/figures

Revision 2625 - Directory Listing
Modified Fri Aug 21 06:30:25 2009 UTC (8 years, 1 month ago) by jfenwick
Merging changes from new doco branch.
All docstrings are now in reStructured text.
A few email addresses have been fixes as well.

Revision 2620 - Directory Listing
Modified Thu Aug 20 06:24:00 2009 UTC (8 years, 1 month ago) by gross
some small additions to pycad to make life a bit easier.

Revision 2606 - Directory Listing
Modified Thu Aug 13 04:32:23 2009 UTC (8 years, 1 month ago) by ahallam
Updates to first chapter in cookbook -> approaching completion.
New figures added for model descriptions.
Scripts updated to use pylab/matplotlib and movie making scripts added for *.avi creation.
Still to finalise in chapter 1
- twodheatdiff model of intrusion
	-contouring

- heat refraction scripts and begin cookbook sections
	- pycad discussion
	- steady state pde discussion
	- quiver plot discussion

Revision 2605 - Directory Listing
Modified Wed Aug 12 22:30:47 2009 UTC (8 years, 1 month ago) by gross
some changes to the cook book

Revision 2602 - Directory Listing
Modified Tue Aug 11 00:38:42 2009 UTC (8 years, 1 month ago) by jfenwick
Merging changes made for release3.0 back to trunk.

Revision 2600 - Directory Listing
Modified Fri Aug 7 04:47:49 2009 UTC (8 years, 1 month ago) by jfenwick
Using the 'agg' backend in matplotlib to avoid reference to the X Display.


Revision 2597 - Directory Listing
Modified Thu Aug 6 03:30:09 2009 UTC (8 years, 1 month ago) by ahallam
Updates to: cookbook documentation; heat refraction problems; mencoder investigation for *.png animation

Revision 2596 - Directory Listing
Modified Thu Aug 6 03:09:03 2009 UTC (8 years, 1 month ago) by lgao
Add new diagnostic information: "net time" (the execution time of solver, excluding the setup time for solver and the execution time of preconditioner)



Revision 2589 - Directory Listing
Modified Wed Aug 5 23:06:35 2009 UTC (8 years, 1 month ago) by ahallam


Revision 2588 - Directory Listing
Modified Wed Aug 5 22:42:36 2009 UTC (8 years, 1 month ago) by ahallam
Heat diffraction initial committal 2 weeks work.

Revision 2583 - Directory Listing
Modified Wed Aug 5 01:49:56 2009 UTC (8 years, 1 month ago) by jfenwick
Minor fixes

Revision 2581 - Directory Listing
Modified Wed Aug 5 01:11:33 2009 UTC (8 years, 1 month ago) by jfenwick
Fixed unit test for missing matplotlib case.


Revision 2580 - Directory Listing
Modified Tue Aug 4 08:24:12 2009 UTC (8 years, 1 month ago) by gross
another example for the usage of matplot lib added to users guide.

Revision 2578 - Directory Listing
Modified Tue Aug 4 04:05:36 2009 UTC (8 years, 1 month ago) by jfenwick
Fixed problem with unit tests

Revision 2575 - Directory Listing
Modified Mon Aug 3 23:38:33 2009 UTC (8 years, 1 month ago) by jfenwick
Fixed some grammar note about Lenny not working.


Revision 2574 - Directory Listing
Modified Mon Aug 3 09:09:20 2009 UTC (8 years, 1 month ago) by gross
matplotlib description added to usersguide

Revision 2573 - Directory Listing
Modified Mon Aug 3 04:30:09 2009 UTC (8 years, 1 month ago) by gross
some more fixes on solver options.

Revision 2568 - Directory Listing
Modified Fri Jul 31 05:37:41 2009 UTC (8 years, 1 month ago) by jfenwick
Updated install guide to include the correct version of python.
Updated Mac build instructions not to use numarray or frameworks.
Removed (commented out) references to MacPorts in the Mac instructions.
- These need to be updated and Artak isn't here.

Removed (commented out) references to windows in the install guide.
CSIRO won't have a windows release ready yet. 



Revision 2563 - Directory Listing
Modified Tue Jul 28 03:50:45 2009 UTC (8 years, 1 month ago) by gross
reengineered version of the mountain class so it becomes easier to use for the convection code

Revision 2559 - Directory Listing
Modified Mon Jul 27 05:19:21 2009 UTC (8 years, 1 month ago) by artak
typo: MaxIter changed IterMax

Revision 2558 - Directory Listing
Modified Mon Jul 27 05:03:32 2009 UTC (8 years, 1 month ago) by gross
a table added showing the available solver options for finley paso.

Revision 2553 - Directory Listing
Modified Fri Jul 24 01:30:14 2009 UTC (8 years, 2 months ago) by jfenwick
Added another citation.


Revision 2549 - Directory Listing
Modified Mon Jul 20 06:43:47 2009 UTC (8 years, 2 months ago) by jfenwick
Remainder of copyright date fixes

Revision 2548 - Directory Listing
Modified Mon Jul 20 06:20:06 2009 UTC (8 years, 2 months ago) by jfenwick
Updating copyright notices

Revision 2547 - Directory Listing
Modified Mon Jul 20 05:50:46 2009 UTC (8 years, 2 months ago) by caltinay
More work on the install guide.


Revision 2545 - Directory Listing
Modified Mon Jul 20 04:54:57 2009 UTC (8 years, 2 months ago) by caltinay
Install guide: fixed a minor typo


Revision 2544 - Directory Listing
Modified Mon Jul 20 04:50:38 2009 UTC (8 years, 2 months ago) by caltinay
Enable building doxygen docs for the escriptreader library.


Revision 2543 - Directory Listing
Modified Mon Jul 20 04:38:21 2009 UTC (8 years, 2 months ago) by caltinay
Install guide: fixed latex compilation due to incompatible hyperref package.


Revision 2540 - Directory Listing
Modified Mon Jul 20 00:09:55 2009 UTC (8 years, 2 months ago) by jfenwick
Deprecating pyvisi in the user guide.

Revision 2538 - Directory Listing
Modified Fri Jul 17 06:24:15 2009 UTC (8 years, 2 months ago) by caltinay
Install guide: Reworked introduction and enabled hyperref package


Revision 2537 - Directory Listing
Modified Fri Jul 17 05:50:35 2009 UTC (8 years, 2 months ago) by jfenwick
Operation_make_pyvisi_go_away: Stage 1 of PI

Removing pyvisi example files.


Revision 2536 - Directory Listing
Modified Thu Jul 16 23:53:07 2009 UTC (8 years, 2 months ago) by caltinay
installguide: Fixed typos, minor semantics, repetitions and whitespace issues.


Revision 2534 - Directory Listing
Modified Thu Jul 16 06:49:19 2009 UTC (8 years, 2 months ago) by caltinay
Changed examples, tests and tutorials to save VTK files as .vtu instead .xml.
Visit doesn't know what to do with xml's and vtu is the proper extension
anyway.


Revision 2531 - Directory Listing
Modified Thu Jul 9 23:56:57 2009 UTC (8 years, 2 months ago) by jfenwick
Setting always build on the api_epydoc target as a quick work around

Revision 2529 - Directory Listing
Modified Thu Jul 9 06:06:35 2009 UTC (8 years, 2 months ago) by jfenwick
Some changes to the install guide.
More work to do.

Revision 2524 - Directory Listing
Modified Wed Jul 8 00:39:26 2009 UTC (8 years, 2 months ago) by artak
Minimum size of the coarsest level matrix option added to solver options

Revision 2521 - Directory Listing
Modified Tue Jul 7 00:08:58 2009 UTC (8 years, 2 months ago) by jfenwick
Modified Lazy so that resolving a single sample uses the node cache method.
Fixed some doxygen problems.

Revision 2515 - Directory Listing
Modified Fri Jul 3 00:59:05 2009 UTC (8 years, 2 months ago) by gross
missing files for documentation

Revision 2513 - Directory Listing
Modified Thu Jul 2 08:42:11 2009 UTC (8 years, 2 months ago) by gross
some fixes in wave.py example

Revision 2512 - Directory Listing
Modified Thu Jul 2 05:34:14 2009 UTC (8 years, 2 months ago) by jfenwick
Made the warnings against linking gomp a bit more detailed.
Commented out gomp from the linux sample.

Revision 2508 - Directory Listing
Modified Thu Jul 2 04:33:25 2009 UTC (8 years, 2 months ago) by jfenwick
Ensured that example files are copied with build_py_tests rather than py_tests.
This means that:
build_full
will set up all the files ready for utest.sh

Revision 2503 - Directory Listing
Modified Wed Jul 1 05:05:08 2009 UTC (8 years, 2 months ago) by jfenwick
Fixing doc build so examples tar and zip are built properly.
Fixed image filenames in user guide.

Please do not put extensions on image files.



Revision 2502 - Directory Listing
Modified Tue Jun 30 05:49:22 2009 UTC (8 years, 2 months ago) by gross
tests for examples added. utest is not working yet.

Revision 2495 - Directory Listing
Modified Fri Jun 26 03:39:21 2009 UTC (8 years, 2 months ago) by ahallam
Many revisions to Head Diff Documentation, One grammar correction to user guide.

Revision 2494 - Directory Listing
Modified Thu Jun 25 05:00:57 2009 UTC (8 years, 2 months ago) by ahallam
Many updates to onedheatdiff in example and documentation. Still in need of some TLC however.

Revision 2486 - Directory Listing
Modified Tue Jun 23 03:38:54 2009 UTC (8 years, 3 months ago) by gross
a bit more info are printed for the DarcyFlux now.

Revision 2484 - Directory Listing
Modified Mon Jun 22 04:22:19 2009 UTC (8 years, 3 months ago) by gross
numarray removed from docu; Locator revised.

Revision 2477 - Directory Listing
Modified Wed Jun 17 06:22:15 2009 UTC (8 years, 3 months ago) by gross
modification to the cookbook

Revision 2474 - Directory Listing
Modified Tue Jun 16 06:32:15 2009 UTC (8 years, 3 months ago) by gross
linearPDEs has is now using the SolverOptions class to talk to PASO

Revision 2470 - Directory Listing
Modified Thu Jun 11 08:32:32 2009 UTC (8 years, 3 months ago) by gross
SolverOption class added. It is not linked with anything.

Revision 2469 - Directory Listing
Modified Thu Jun 11 04:52:14 2009 UTC (8 years, 3 months ago) by ahallam
Week 11: Close to finishing wave equation, looking at adding friction to wave equation.

Revision 2467 - Directory Listing
Modified Tue Jun 9 23:12:04 2009 UTC (8 years, 3 months ago) by jfenwick
Fixed a missing file.


Revision 2466 - Directory Listing
Modified Tue Jun 9 05:02:56 2009 UTC (8 years, 3 months ago) by jfenwick
Fixed build from source instructions for linux to include offscreen rendering by default!

Revision 2463 - Directory Listing
Modified Tue Jun 9 03:51:23 2009 UTC (8 years, 3 months ago) by jfenwick
Added an svn-ignore, added changes and references section to user guide.

Revision 2462 - Directory Listing
Modified Fri Jun 5 06:04:01 2009 UTC (8 years, 3 months ago) by jfenwick
Modified wrapper script to correctly point at numpy in standalone builds.
Updated build from source doco for linux to take numpy into account.
Also removed backticks in favour of $()  - it should be the same but latex won't eat them

Revision 2460 - Directory Listing
Modified Fri Jun 5 05:04:45 2009 UTC (8 years, 3 months ago) by ahallam
Week 10:
Continued work on wave equation and tutorial write up.

Revision 2455 - Directory Listing
Modified Wed Jun 3 03:29:07 2009 UTC (8 years, 3 months ago) by jfenwick
Merging changes from numpy branch.


Revision 2448 - Directory Listing
Modified Fri May 29 04:47:48 2009 UTC (8 years, 3 months ago) by ahallam
Week 9: implemented cosine taper for wave function, need to work on direct method without lumping, wave propagation velocity is still not correct

Revision 2446 - Directory Listing
Modified Fri May 29 04:24:01 2009 UTC (8 years, 3 months ago) by gross
same adjustment of nameing

Revision 2444 - Directory Listing
Modified Fri May 29 01:51:28 2009 UTC (8 years, 3 months ago) by ahallam


Revision 2443 - Directory Listing
Modified Fri May 29 01:44:22 2009 UTC (8 years, 3 months ago) by ahallam
Fixing some things

Revision 2438 - Directory Listing
Modified Tue May 26 02:26:52 2009 UTC (8 years, 3 months ago) by gross
new version of power law (blame Hans)

Revision 2434 - Directory Listing
Modified Thu May 21 07:59:53 2009 UTC (8 years, 4 months ago) by ahallam
Week 8: Still working on seismic wave propagation. Need to come up with a smooth source function next week. All TEXT files up to date.

Revision 2433 - Directory Listing
Modified Wed May 20 08:43:43 2009 UTC (8 years, 4 months ago) by gross
some documentation on power law added

Revision 2432 - Directory Listing
Modified Wed May 20 06:06:20 2009 UTC (8 years, 4 months ago) by gross
power law and incompressible flow is running now

Revision 2429 - Directory Listing
Modified Tue May 19 10:04:54 2009 UTC (8 years, 4 months ago) by gross
pycad allows noe to set the number of elements per line and the generation of quadrilateral elements over serfaces.

Revision 2427 - Directory Listing
Modified Fri May 15 04:29:01 2009 UTC (8 years, 4 months ago) by ahallam
Week 7: Work done on wave problem.

Revision 2426 - Directory Listing
Modified Fri May 15 04:28:31 2009 UTC (8 years, 4 months ago) by ahallam
Week 7: Work done on wave problem.

Revision 2420 - Directory Listing
Modified Thu May 14 02:28:58 2009 UTC (8 years, 4 months ago) by gross
vtk writer supports now meta data and meta data schema

Revision 2417 - Directory Listing
Modified Wed May 13 08:18:47 2009 UTC (8 years, 4 months ago) by gross
some remarks on load and dump added to the users guide.

Revision 2415 - Directory Listing
Modified Wed May 13 02:48:39 2009 UTC (8 years, 4 months ago) by gross
FileWriter added: this class takes care of writing data which are global in MPI to a file. It is recommended to use this class rather then the build in open as it takes care of the case of many processors.

Revision 2412 - Directory Listing
Modified Fri May 8 04:27:17 2009 UTC (8 years, 4 months ago) by jfenwick
Clean up cookbook-
Cleaned up the svn:ignore
removed some latex intermediate files


Revision 2411 - Directory Listing
Modified Fri May 8 03:13:15 2009 UTC (8 years, 4 months ago) by ahallam
Week 6 I think?? Started work on 2d wave solution, want to change from verlet according to lutz. Have semi finished heat diffusion but is ready for review and further modification in the future. Added new sections to first chapter, may or may not be needed but added as a reminder anyway.

Revision 2409 - Directory Listing
Modified Tue May 5 06:22:11 2009 UTC (8 years, 4 months ago) by jfenwick
bin/escript is now under version control.
The wrapper template is no longer used.
Extraneous output doc removed from scons during build.

note: finleypython is no longer built (it was deprecated anyway).

Revision 2405 - Directory Listing
Modified Wed Apr 29 23:57:38 2009 UTC (8 years, 4 months ago) by jfenwick
Another attempt at building the doco.
--transform is not supported by savanna's tar


Revision 2404 - Directory Listing
Modified Wed Apr 29 06:53:36 2009 UTC (8 years, 4 months ago) by gross
documentation for units added.

Revision 2402 - Directory Listing
Modified Wed Apr 29 06:02:21 2009 UTC (8 years, 4 months ago) by jfenwick
Fixing the build of example tar and zip files so they don't have full 
paths.


Revision 2401 - Directory Listing
Modified Wed Apr 29 04:23:07 2009 UTC (8 years, 4 months ago) by ahallam
End Week 5:
Renamed *.tex files to more logical, changed to chapter format as HEAT_DIFFUSION.tex
Editted and Reviewed text portion and some python scripts for heat diffusion.
Looking to push for finalisation on heat diffusion in the next couple of week to begin next modelling problem/Chapter.

Revision 2397 - Directory Listing
Modified Fri Apr 24 04:24:28 2009 UTC (8 years, 4 months ago) by ahallam
End Week 4, Finalised 1D examples, need work on text but script ok.
Begining of 2D example builds on 1D. Script semi-finalised, text to complete.

Revision 2393 - Directory Listing
Modified Thu Apr 16 04:24:07 2009 UTC (8 years, 5 months ago) by ahallam
End Day Commit
Working on onedheatdiff_var001

Revision 2392 - Directory Listing
Modified Thu Apr 16 01:53:23 2009 UTC (8 years, 5 months ago) by ahallam
Initial Commital of CookBook to SVN
Has 2.5 Weeks work and semi completed first heat diffusion tutorial

Revision 2391 - Directory Listing
Modified Thu Apr 16 01:08:57 2009 UTC (8 years, 5 months ago) by jfenwick
Minor tweak to title page.
Better handling of alternative names in SConstruct.


Revision 2390 - Directory Listing
Modified Wed Apr 15 06:46:42 2009 UTC (8 years, 5 months ago) by gross
some minor fixes.

Revision 2389 - Directory Listing
Modified Wed Apr 15 06:46:01 2009 UTC (8 years, 5 months ago) by gross
some minor fixes.

Revision 2387 - Directory Listing
Modified Wed Apr 15 05:05:27 2009 UTC (8 years, 5 months ago) by jfenwick
Changed the figure eps->pdf to use a builder to make hypothetical windows doc building easier.

Revision 2375 - Directory Listing
Modified Tue Apr 7 04:41:28 2009 UTC (8 years, 5 months ago) by gross
MPI hints added

Revision 2373 - Directory Listing
Modified Mon Apr 6 23:49:31 2009 UTC (8 years, 5 months ago) by jfenwick
Minor spelling and man page tweaks.


Revision 2372 - Directory Listing
Modified Mon Apr 6 23:36:15 2009 UTC (8 years, 5 months ago) by gross
changes to the urls

Revision 2371 - Directory Listing
Modified Mon Apr 6 11:48:32 2009 UTC (8 years, 5 months ago) by gross
missing  citations and references added

Revision 2370 - Directory Listing
Modified Mon Apr 6 06:41:49 2009 UTC (8 years, 5 months ago) by gross
some modifications to docu for MPI

Revision 2363 - Directory Listing
Modified Fri Apr 3 03:56:19 2009 UTC (8 years, 5 months ago) by gross
scons should now be able to run tests under MPI and OpenMP

Revision 2361 - Directory Listing
Modified Fri Apr 3 00:37:25 2009 UTC (8 years, 5 months ago) by jfenwick
Hopefully fixing the bad figures.
It turns out latex2html can not handle the optional angle= param in 
\includegraphics


Revision 2359 - Directory Listing
Modified Thu Apr 2 03:50:33 2009 UTC (8 years, 5 months ago) by jfenwick
Moved man page for easier testing.
Modified the wrapper script to take into account debian packaging.
This setting is recorded in the escript wrapper automatically by the package building script.

Revision 2356 - Directory Listing
Modified Wed Apr 1 04:46:22 2009 UTC (8 years, 5 months ago) by gross
more on escript command.

Revision 2355 - Directory Listing
Modified Wed Apr 1 04:08:28 2009 UTC (8 years, 5 months ago) by gross
intel MPI added.

Revision 2352 - Directory Listing
Modified Wed Apr 1 01:15:15 2009 UTC (8 years, 5 months ago) by jfenwick
Updated doco to reflect changed env variables


Revision 2350 - Directory Listing
Modified Tue Mar 31 08:26:05 2009 UTC (8 years, 5 months ago) by gross
more escript wrapper stuff

Revision 2347 - Directory Listing
Modified Mon Mar 30 06:07:47 2009 UTC (8 years, 5 months ago) by jfenwick
Added windows notes to install guide.


Revision 2346 - Directory Listing
Modified Mon Mar 30 05:05:44 2009 UTC (8 years, 5 months ago) by jfenwick
Added instructions to test installations.


Revision 2345 - Directory Listing
Modified Mon Mar 30 04:44:06 2009 UTC (8 years, 5 months ago) by jfenwick
Added proper man page (with formatting and everything).
Updated package description.


Revision 2344 - Directory Listing
Modified Mon Mar 30 02:13:58 2009 UTC (8 years, 5 months ago) by jfenwick
Change __url__ to launchpad site


Revision 2343 - Directory Listing
Modified Mon Mar 30 01:34:45 2009 UTC (8 years, 5 months ago) by jfenwick
Added -b option to wrapper script. For the running of non-python 
binaries.


Revision 2342 - Directory Listing
Modified Sun Mar 29 23:28:55 2009 UTC (8 years, 5 months ago) by jfenwick
No comment.


Revision 2341 - Directory Listing
Modified Fri Mar 27 05:40:56 2009 UTC (8 years, 5 months ago) by jfenwick


Revision 2340 - Directory Listing
Modified Fri Mar 27 05:32:05 2009 UTC (8 years, 5 months ago) by jfenwick
And again

Revision 2339 - Directory Listing
Modified Fri Mar 27 05:14:55 2009 UTC (8 years, 5 months ago) by jfenwick
Fixing a bug preventing docs from building

Revision 2338 - Directory Listing
Modified Fri Mar 27 05:01:49 2009 UTC (8 years, 5 months ago) by jfenwick
Added vars for mpi_flavour
Output correct version into the user guide

Revision 2337 - Directory Listing
Modified Thu Mar 26 07:07:42 2009 UTC (8 years, 5 months ago) by gross
Transport class uses now useBackwardEuler rather than the mysterious theta.

Revision 2336 - Directory Listing
Modified Thu Mar 26 06:09:20 2009 UTC (8 years, 5 months ago) by jfenwick
Fixed title for pdf builds.
All the peices build now. (There are still issues with Figure 1.7 in the html version).

Revision 2335 - Directory Listing
Modified Thu Mar 26 04:33:44 2009 UTC (8 years, 5 months ago) by jfenwick
The user guide now builds under pdflatex (if you have converted the figures). Unfortunately, it has a really ugly title.

Revision 2334 - Directory Listing
Modified Thu Mar 26 03:05:33 2009 UTC (8 years, 5 months ago) by jfenwick
Getting install guide to build.


Revision 2333 - Directory Listing
Modified Wed Mar 25 02:15:11 2009 UTC (8 years, 5 months ago) by jfenwick
Minor format tweaks.
All relevant info from the twiki install page now copied.
(Except INSTALL.SGI_ICE)


Revision 2332 - Directory Listing
Modified Tue Mar 24 01:13:08 2009 UTC (8 years, 6 months ago) by jfenwick
Added new options to the escript wrapper.
This populates all the variables described in the documentation but does 
not necessarily do anything with them.

Fixed minor typo in doco.


Revision 2331 - Directory Listing
Modified Mon Mar 23 01:18:21 2009 UTC (8 years, 6 months ago) by jfenwick
Updated the escript execution section.
Added a few references.

Revision 2329 - Directory Listing
Modified Mon Mar 23 00:42:57 2009 UTC (8 years, 6 months ago) by artak
minor

Revision 2328 - Directory Listing
Modified Fri Mar 20 03:40:56 2009 UTC (8 years, 6 months ago) by artak
Added a section on installing using Macports. in srclinux.tex $ replaced by $

Revision 2327 - Directory Listing
Modified Thu Mar 19 06:01:26 2009 UTC (8 years, 6 months ago) by artak
Mac OS X development tools instructions are added.

Revision 2326 - Directory Listing
Modified Thu Mar 19 05:34:00 2009 UTC (8 years, 6 months ago) by artak
Instructions on how to install on Mac from source.

Revision 2324 - Directory Listing
Modified Thu Mar 19 04:35:30 2009 UTC (8 years, 6 months ago) by jfenwick
Fixed some non-portable paths in SConstruct.
Added section links for compiling only escript.

Revision 2321 - Directory Listing
Modified Thu Mar 19 04:08:59 2009 UTC (8 years, 6 months ago) by artak
Mac instructions for binary bundle.

Revision 2318 - Directory Listing
Modified Thu Mar 19 03:18:11 2009 UTC (8 years, 6 months ago) by gross
more on MPI in the users guide.

Revision 2317 - Directory Listing
Modified Thu Mar 19 01:48:00 2009 UTC (8 years, 6 months ago) by jfenwick
Adding Content.


Revision 2316 - Directory Listing
Modified Thu Mar 19 01:22:15 2009 UTC (8 years, 6 months ago) by gross
some documentation on the escript wrapper added.

Revision 2313 - Directory Listing
Modified Tue Mar 17 03:41:17 2009 UTC (8 years, 6 months ago) by gross
pyvisi is now rejecting to work under MPI with more than 1 processor. Tests for this configuration are dropped now.




Revision 2306 - Directory Listing
Modified Mon Mar 16 00:23:57 2009 UTC (8 years, 6 months ago) by artak
verbose added

Revision 2304 - Directory Listing
Modified Fri Mar 13 03:17:24 2009 UTC (8 years, 6 months ago) by gross
a more robust way of doing whereZero and whereNotZero.

Revision 2300 - Directory Listing
Modified Wed Mar 11 08:17:57 2009 UTC (8 years, 6 months ago) by gross
a power law model. tests still need to be added and needs to be linked with an incompressible solver.

Revision 2294 - Directory Listing
Modified Mon Mar 2 03:44:27 2009 UTC (8 years, 6 months ago) by jfenwick
Added instructions on how to install debian package to the install guide.
Wrapper script generation now produces two scripts (escript and finleypython).
The two are identical - eventually we will remove finleypython.

Modified the wrapper script so it will print a message and start the python interpreter if you don't specify a script.

Revision 2291 - Directory Listing
Modified Fri Feb 27 01:53:06 2009 UTC (8 years, 6 months ago) by jfenwick
Added scripts and such for building debian packages against Debian/Lenny.
Some things like the man page and the package description need some work but the packages produced appear to work.

If people are going to produce .debs please read read the packaging/lenny/README_developers_this_means_you

file.



Revision 2290 - Directory Listing
Modified Thu Feb 26 06:38:16 2009 UTC (8 years, 6 months ago) by jfenwick
Some minor changes to doco before I mess about with packaging.

Revision 2289 - Directory Listing
Modified Wed Feb 25 03:38:59 2009 UTC (8 years, 6 months ago) by jfenwick
Main compilation page copied from twiki.

Revision 2287 - Directory Listing
Modified Tue Feb 24 04:29:17 2009 UTC (8 years, 6 months ago) by jfenwick
Added skeleton of install guide.
Removed some files which come in the standard texlive distro anyway.
Updated README_LICENSE to list python tex styles.

Revision 2283 - Directory Listing
Modified Fri Feb 20 01:08:21 2009 UTC (8 years, 7 months ago) by jfenwick
doxygen doco now correctly reports global project revsion number.
link to epydoc is now via a relative URL (avoids the problem of nightly doxygen pointing at out of date release epydoc).

Revision 2264 - Directory Listing
Modified Wed Feb 11 06:48:28 2009 UTC (8 years, 7 months ago) by gross
a new darcy flux solver.

Revision 2252 - Directory Listing
Modified Fri Feb 6 07:51:28 2009 UTC (8 years, 7 months ago) by gross
some notes for the kelvin model added. Implementation is still missing

Revision 2251 - Directory Listing
Modified Fri Feb 6 06:50:39 2009 UTC (8 years, 7 months ago) by gross
new compressible flow solver

Revision 2211 - Directory Listing
Modified Tue Jan 13 03:52:13 2009 UTC (8 years, 8 months ago) by artak
Example of a usage of Mountains class.

Revision 2208 - Directory Listing
Modified Mon Jan 12 06:37:07 2009 UTC (8 years, 8 months ago) by gross
more work on the dary solver 



Revision 2193 - Directory Listing
Modified Mon Jan 5 04:29:06 2009 UTC (8 years, 8 months ago) by lgraham
Edited Stokes flow and Level Set tutorials (grammar etc.)


Revision 2192 - Directory Listing
Modified Mon Jan 5 02:41:34 2009 UTC (8 years, 8 months ago) by lgraham
Edited Stokes flow tutorial


Revision 2191 - Directory Listing
Modified Mon Jan 5 00:30:15 2009 UTC (8 years, 8 months ago) by lgraham
Included a tutorial on fluid flow, using the StokesProblemCartesian class


Revision 2182 - Directory Listing
Modified Thu Dec 18 03:30:17 2008 UTC (8 years, 9 months ago) by caltinay
Fixed some more typos


Revision 2181 - Directory Listing
Modified Thu Dec 18 00:58:48 2008 UTC (8 years, 9 months ago) by caltinay
Fixed two typos in bibliography


Revision 2156 - Directory Listing
Modified Mon Dec 15 05:09:02 2008 UTC (8 years, 9 months ago) by gross
some modifications to the iterative solver to make them easier to use. 
There are also improved versions of the Darcy flux solver and the incompressible solver.



Revision 2148 - Directory Listing
Modified Wed Dec 10 04:57:35 2008 UTC (8 years, 9 months ago) by lgraham
Updated the LevelSet class section in the Models chapter. The section is contained in a .tex file at the moment to avoid conflict.


Revision 2138 - Directory Listing
Modified Mon Dec 8 02:27:07 2008 UTC (8 years, 9 months ago) by lgraham
starting a section for the Level Set class in the Models chapter.


Revision 2129 - Directory Listing
Modified Thu Dec 4 03:53:02 2008 UTC (8 years, 9 months ago) by lgraham
Added RT2D.py python script for levelset tutorial to examples directory.


Revision 2128 - Directory Listing
Modified Thu Dec 4 03:48:22 2008 UTC (8 years, 9 months ago) by lgraham
Added description of Rayleigh-Taylor instability python script, and a note on visualising the output with visit.


Revision 2127 - Directory Listing
Modified Thu Dec 4 03:42:45 2008 UTC (8 years, 9 months ago) by lgraham
added figures of simulation output for Rayleigh-Taylor instability; produced by visIt 


Revision 2121 - Directory Listing
Modified Wed Dec 3 00:25:08 2008 UTC (8 years, 9 months ago) by jfenwick
Removing pdf from repository.

Revision 2120 - Directory Listing
Modified Tue Dec 2 06:21:49 2008 UTC (8 years, 9 months ago) by lgraham
Added Rayleigh-Taylor instability code into users guide


Revision 2115 - Directory Listing
Modified Tue Dec 2 01:21:07 2008 UTC (8 years, 9 months ago) by lgraham
Added in theory of the reinitialisation procedure for the level set method.



Revision 2108 - Directory Listing
Modified Fri Nov 28 05:09:23 2008 UTC (8 years, 9 months ago) by gross
some minor changes to PCG and some extra suspicious characters.

Revision 2104 - Directory Listing
Modified Thu Nov 27 05:36:47 2008 UTC (8 years, 9 months ago) by jfenwick
Fixed non-compilage.
Removed mysterious t and t! from output.

Revision 2100 - Directory Listing
Modified Wed Nov 26 08:13:00 2008 UTC (8 years, 9 months ago) by gross
This commit cleans up the incompressible solver and adds a DarcyFlux solver in model module. 
Some documentation for both classes has been added.
The convection code is only linear at the moment.




Revision 2091 - Directory Listing
Modified Tue Nov 25 03:26:51 2008 UTC (8 years, 9 months ago) by ksteube
Updates for running epydoc and creating examples_zipfile


Revision 2065 - Directory Listing
Modified Thu Nov 20 04:25:47 2008 UTC (8 years, 10 months ago) by jfenwick
Have the epydoc put its output in the correct place before anyone 
notices.


Revision 2063 - Directory Listing
Modified Wed Nov 19 04:59:43 2008 UTC (8 years, 10 months ago) by jfenwick
- Removed some deprecated directories.
- Removed the pythfilter script for converting python doco into c++ stubs. The license was unspecified and we don't use it.
- Suppressed long long warnings on gcc (the Mac complained).
- svn:ignored Mac library suffixes in lib directory

Revision 2062 - Directory Listing
Modified Wed Nov 19 04:32:13 2008 UTC (8 years, 10 months ago) by jfenwick
Fixed api_epydoc so that it actually rebuilds the doco when required.

Revision 2061 - Directory Listing
Modified Wed Nov 19 03:40:21 2008 UTC (8 years, 10 months ago) by jfenwick
Fixing some warnings from epydoc.
Disabled c++ signatures in python docstrings.
Removed references to Bruce in epydoc and the users guide.

Revision 2035 - Directory Listing
Modified Thu Nov 13 03:16:09 2008 UTC (8 years, 10 months ago) by jfenwick
Putting poisson.py back


Revision 2034 - Directory Listing
Modified Thu Nov 13 03:03:42 2008 UTC (8 years, 10 months ago) by artak
variable <set> is initilized to get rid of compiler warnning errors. finley/src/Quadrature.c

Revision 2006 - Directory Listing
Modified Mon Nov 10 03:07:08 2008 UTC (8 years, 10 months ago) by jfenwick
Updating svn:ignore properties.


Revision 2005 - Directory Listing
Modified Mon Nov 10 01:21:39 2008 UTC (8 years, 10 months ago) by jfenwick
Bringing all changes across from schroedinger.
(Note this does not mean development is done, just that it will happen
on the trunk for now).
If anyone notices any problems please contact me.



Revision 1978 - Directory Listing
Modified Thu Nov 6 04:21:23 2008 UTC (8 years, 10 months ago) by artak
MINRES, TFQMR, GS are added

Revision 1973 - Directory Listing
Modified Thu Nov 6 02:31:37 2008 UTC (8 years, 10 months ago) by lgraham
Tidied up the white space between the equations and fixed gramma in the Rayleigh-Taylor Instability (levelset) tutorial.
Will include Escript code soon.


Revision 1971 - Directory Listing
Modified Thu Nov 6 01:11:23 2008 UTC (8 years, 10 months ago) by artak
Some typos fixed. The rearagments of figure 1, and footnotes added to avoid confusion.

Revision 1966 - Directory Listing
Modified Wed Nov 5 04:59:22 2008 UTC (8 years, 10 months ago) by jfenwick
Some more fixes to user guide.

Revision 1964 - Directory Listing
Modified Wed Nov 5 03:21:31 2008 UTC (8 years, 10 months ago) by caltinay
user's guide: Reviewed and updated pyvisi documentation.


Revision 1963 - Directory Listing
Modified Wed Nov 5 03:20:24 2008 UTC (8 years, 10 months ago) by caltinay
user's guide: Fixed some typos.


Revision 1959 - Directory Listing
Modified Tue Nov 4 01:49:19 2008 UTC (8 years, 10 months ago) by jfenwick
More fixes to doco.

Revision 1958 - Directory Listing
Modified Mon Nov 3 23:47:16 2008 UTC (8 years, 10 months ago) by jfenwick
Fixed URL to python doc in guide_defs


Revision 1957 - Directory Listing
Modified Mon Nov 3 06:14:18 2008 UTC (8 years, 10 months ago) by jfenwick
Some fixes to user guide


Revision 1955 - Directory Listing
Modified Fri Oct 31 04:01:24 2008 UTC (8 years, 10 months ago) by jfenwick
Fixed some macros so they don't add extra spaces.
Switched from input to include for chapters for faster recompile.


Revision 1941 - Directory Listing
Modified Tue Oct 28 07:51:49 2008 UTC (8 years, 10 months ago) by ksteube
Updated installation directions in the User Guide to simply
point to the instructions on the wiki, which I have already
updated extensively.


Revision 1892 - Directory Listing
Modified Fri Oct 17 00:55:59 2008 UTC (8 years, 11 months ago) by artak
memory leak is fixed

Revision 1878 - Directory Listing
Modified Tue Oct 14 03:39:13 2008 UTC (8 years, 11 months ago) by gross
new version of JacobiFree Newton GMRES + test added.

Revision 1863 - Directory Listing
Modified Wed Oct 8 23:54:00 2008 UTC (8 years, 11 months ago) by ksteube
Improved test for off-screen rendering with pyvisi


Revision 1859 - Directory Listing
Modified Wed Oct 8 03:03:37 2008 UTC (8 years, 11 months ago) by gross
first version of testing for transport solver.

Revision 1841 - Directory Listing
Modified Fri Oct 3 03:57:52 2008 UTC (8 years, 11 months ago) by gross
modification on LinearPDE class and a first version of Transport class

Revision 1830 - Directory Listing
Modified Thu Oct 2 06:51:48 2008 UTC (8 years, 11 months ago) by ksteube
Tests using JoinFaces() and domain.write() will not work under MPI and must be disabled for num procs > 1


Revision 1811 - Directory Listing
Modified Thu Sep 25 23:11:13 2008 UTC (8 years, 11 months ago) by ksteube
Copyright updated in all files


Revision 1805 - Directory Listing
Modified Wed Sep 24 23:39:00 2008 UTC (8 years, 11 months ago) by ksteube
Added python-level methods getMPISizeWorld() and getMPIRankWorld() for MPI process info.
Test suite run_inputOutput.py runs on any number of cores now, hybrid may still be a problem.


Revision 1796 - Directory Listing
Modified Wed Sep 17 01:45:46 2008 UTC (9 years ago) by jfenwick
Merged noarrayview branch onto trunk.



Revision 1746 - Directory Listing
Modified Wed Sep 3 01:24:16 2008 UTC (9 years ago) by lgraham
Corrected plus (+) sign in Equation (2.54) for elastic tensor, and (2.60) for von Mises stress.


Revision 1709 - Directory Listing
Modified Fri Aug 15 01:09:45 2008 UTC (9 years, 1 month ago) by lgraham
added separate section for Einstein notation



Revision 1705 - Directory Listing
Modified Thu Aug 14 05:56:40 2008 UTC (9 years, 1 month ago) by ksteube
Branch scons-dev is hereby closed.
Some parts of scons scripts have been re-written.


Revision 1702 - Directory Listing
Modified Thu Aug 14 04:10:23 2008 UTC (9 years, 1 month ago) by lgraham
added in latex file for models chapter



Revision 1701 - Directory Listing
Modified Thu Aug 14 04:05:15 2008 UTC (9 years, 1 month ago) by lgraham
comments for rev 1700.
Ran through spell checker for tutorial chapters.
Added in a tutorial chapter introducing the level set method with the Rayleigh-Taylor instability problem. Need to add python code at a later date for level set class.
Started to write up a chapter on model classes, e.g. StokesProblemCartesian, LevelSet, DurckerPrager, and TemperatureCartesian etc.
  


Revision 1700 - Directory Listing
Modified Thu Aug 14 03:35:46 2008 UTC (9 years, 1 month ago) by lgraham


Revision 1569 - Directory Listing
Modified Sat May 24 04:51:38 2008 UTC (9 years, 4 months ago) by ksteube
Config for new installation at APAC with offscreen rendering


Revision 1568 - Directory Listing
Modified Sat May 24 03:15:08 2008 UTC (9 years, 4 months ago) by ksteube
Some testing on ac.apac.edu.au, more work needed
New pyvisi example offscreen.py for offscreen rendering


Revision 1567 - Directory Listing
Modified Thu May 22 22:52:41 2008 UTC (9 years, 4 months ago) by ksteube
scons all_tests passes on Savanna with OMP=1 and OMP=4.
New boost for Savanna.
A few more cases of #s -> %s.


Revision 1459 - Directory Listing
Modified Thu Mar 27 01:49:10 2008 UTC (9 years, 5 months ago) by ksteube
Implemented ParMETIS for mesh partition optimization under MPI.
Documented optimize=True in User Guide for Brick() and Rectangle().


Revision 1388 - Directory Listing
Modified Fri Jan 11 07:45:58 2008 UTC (9 years, 8 months ago) by trankine
And get the *(&(*&(* name right

Revision 1387 - Directory Listing
Modified Fri Jan 11 07:45:26 2008 UTC (9 years, 8 months ago) by trankine
Original Path: temp/doc
Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

Revision 1384 - Directory Listing
Modified Fri Jan 11 02:29:38 2008 UTC (9 years, 8 months ago) by phornby
Original Path: temp_trunk_copy/doc
Make a temp copy of the trunk before checking in the windows changes



Revision 1324 - Directory Listing
Modified Sun Sep 30 23:35:17 2007 UTC (9 years, 11 months ago) by ksteube
Interval mesh type has been removed from the User Guide
Adjusted getVersion method


Revision 1318 - Directory Listing
Modified Wed Sep 26 04:39:14 2007 UTC (9 years, 11 months ago) by ksteube
A very quick edit of chapter 3 of the User Guide. More editing needed.


Revision 1316 - Directory Listing
Modified Tue Sep 25 03:18:30 2007 UTC (9 years, 11 months ago) by ksteube
Quickly edited chapters 1 and 2 of the User Guide, but it needs more work.
Ran entire document through spell checker.


Revision 1216 - Directory Listing
Modified Thu Jul 12 06:20:08 2007 UTC (10 years, 2 months ago) by ksteube
Build now works on systems where doxygen is not available.
Repaired target scons guide_html_index to create HTML user guide.


Revision 1215 - Directory Listing
Modified Thu Jul 12 01:14:55 2007 UTC (10 years, 2 months ago) by ksteube
Repaired all targets for: scons docs
It runs all these targets: release_examples guide_pdf api_epydoc api_doxygen


Revision 1214 - Directory Listing
Modified Wed Jul 11 04:21:45 2007 UTC (10 years, 2 months ago) by ksteube
Add image missing from user guide


Revision 1212 - Directory Listing
Modified Thu Jul 5 00:41:19 2007 UTC (10 years, 2 months ago) by jongui
Made some minor changes to the guide.

Revision 1211 - Directory Listing
Modified Wed Jul 4 05:16:46 2007 UTC (10 years, 2 months ago) by jongui
- Fixed some minor bugs.
- Added a new feature called 'MapOnScalarClipWithRotation' that clips a two-dimensional data with a scalar value and subsequently rotating it to create a three-dimensional effect.
- Corresponding examples, test cases and documentation of the new module have also been added.

Revision 1210 - Directory Listing
Modified Tue Jul 3 05:47:34 2007 UTC (10 years, 2 months ago) by jongui
Made some minor changes.

Revision 1208 - Directory Listing
Modified Mon Jul 2 04:46:10 2007 UTC (10 years, 2 months ago) by jongui
Made some changes to the Carpet module. When 3D data is used, a cut will be performed using a plane before deformation occurs on the plane. However, if 2D data is used a cut will NOT be performed and deformation will instead occur immediately. 

Pyvisi distinguishes 2D from 3D data by retrieving the length of the z-axis. A 2D data will have a z-axis length of zero while a 3D data will have a z-axis length of non-zero. There are exceptions to these rules where some 2D data may have a non-zero z-axis length. However, such exceptions are not taken into account at this stage.


Revision 1206 - Directory Listing
Modified Fri Jun 29 06:09:19 2007 UTC (10 years, 2 months ago) by jongui
Updated the guide further.

Revision 1205 - Directory Listing
Modified Fri Jun 29 04:44:04 2007 UTC (10 years, 2 months ago) by jongui
- Fixed a minor bug in the Velocity module.
- Added the Rectangle module which enables rectangles to be created.
- Added corresponding examples and test cases for the Rectangle.
- Updated the guide and necessary epydocs.




Revision 1203 - Directory Listing
Modified Thu Jun 21 23:17:16 2007 UTC (10 years, 3 months ago) by jongui
Made some minor changes to the exampels.

Revision 1202 - Directory Listing
Modified Thu Jun 21 04:44:17 2007 UTC (10 years, 3 months ago) by jongui
Minor change to the movie example.

Revision 1201 - Directory Listing
Modified Thu Jun 21 04:42:56 2007 UTC (10 years, 3 months ago) by jongui
Added a pyvisi readme file for internal use (by Ken).

Revision 1199 - Directory Listing
Modified Wed Jun 20 05:01:30 2007 UTC (10 years, 3 months ago) by jongui
- Updated the epydocs and guide.
Deleted redundant files and methods.
Tidied up the codes.

Revision 1197 - Directory Listing
Modified Mon Jun 18 02:08:34 2007 UTC (10 years, 3 months ago) by jongui
Update the way movies are generated. Please refer to the examples. 

The user can now either specify the image range(first and last images inclusive):
mov.imageRange(input_directory = PYVISI_EXAMPLE_IMAGES_PATH,
        first_image = IMAGE_NAME + "000938.jpg",
		last_image = IMAGE_NAME + "000948.jpg")
mov.makeMovie(os.path.join(PYVISI_EXAMPLE_IMAGES_PATH, "movie.mpg"))

or the user can specify a list of images:

lst = ['image1.jpg', 'image5.jpg', 'image7.jpg]
mov.imageList(input_directory = PYVISI_EXAMPLE_IMAGES_PATH, image_list = lst)
mov.makeMovie(os.path.join(PYVISI_EXAMPLE_IMAGES_PATH, "movie.mpg"))



Revision 1194 - Directory Listing
Modified Thu Jun 14 05:53:49 2007 UTC (10 years, 3 months ago) by jongui
- Fixed a minor bug in the Camera module.
- Added some extra capability to the Movie module.
- The Camera module now has the capability to perform parallel projection by calling the 'parallelProjectionOn' method.
- The Camera at this stage is only capable of zooming towards the rendered object using 'dolly'. However, it appears that 'dolly' cannot be used to perform zooming out.

Revision 1191 - Directory Listing
Modified Tue Jun 12 05:54:41 2007 UTC (10 years, 3 months ago) by jongui
A movie can now be generated within the python script itself by creating an instace of 'Movie'. The 'Movie' instance will in turn execute the 'ppmtompeg' command. The corresponding tests and examples have also been added.

Revision 1190 - Directory Listing
Modified Fri Jun 8 05:47:25 2007 UTC (10 years, 3 months ago) by jongui
Fixed a minor bug in the scene module.

Revision 1189 - Directory Listing
Modified Thu Jun 7 05:31:25 2007 UTC (10 years, 3 months ago) by jongui
A Scalar Bar can now be displayed by creating an instance of a 'Legend'. The Scalar Bar can either show the scalar data range or vector data range. Corresponding examples and tests have also been added.

Revision 1171 - Directory Listing
Modified Fri May 25 06:55:05 2007 UTC (10 years, 3 months ago) by gross
some modifications to the tests to consider the new integration schemes for tri and tet

Revision 1169 - Directory Listing
Modified Fri May 25 03:44:14 2007 UTC (10 years, 4 months ago) by jongui
Added another example that shows the use of multiple modules in a script together.

Revision 1168 - Directory Listing
Modified Thu May 24 05:36:42 2007 UTC (10 years, 4 months ago) by jongui
Pyvisi now has the capability to save the rendered objects as VRML (.wrl) and OpenInventor (.iv) file types. Corresponding tests have also been added.

Revision 1167 - Directory Listing
Modified Thu May 24 01:04:17 2007 UTC (10 years, 4 months ago) by jongui
Deleted remaining scenes from the test cases and updated the guide.

Revision 1163 - Directory Listing
Modified Wed May 23 23:56:39 2007 UTC (10 years, 4 months ago) by gross
import of DISPLAY environment variable into scons ENV added. This is required to run pyvisi tests under XGL

Revision 1161 - Directory Listing
Modified Wed May 23 04:17:52 2007 UTC (10 years, 4 months ago) by jongui
Made some minor updates to the test.

Revision 1158 - Directory Listing
Modified Tue May 22 04:24:01 2007 UTC (10 years, 4 months ago) by jongui
Made some changes to fix the memory leak problem. However, the problem still persists for run_escript_with_lazy_evaluation.py, run_streamline.py and run_streamline_with_lazy_evaluation.py.


Revision 1154 - Directory Listing
Modified Fri May 18 02:46:32 2007 UTC (10 years, 4 months ago) by jongui
Updated the in-line documentation and guide.

Revision 1153 - Directory Listing
Modified Thu May 17 06:33:54 2007 UTC (10 years, 4 months ago) by jongui
Made some minor modifications and fixed minor bugs. Most tests appear to pass on the Altix although there are two tests which occasionally throw an error related to memory corruption.

Revision 1150 - Directory Listing
Modified Thu May 17 00:42:34 2007 UTC (10 years, 4 months ago) by jongui
Added the new images.

Revision 1148 - Directory Listing
Modified Wed May 16 22:45:33 2007 UTC (10 years, 4 months ago) by jongui
Added the updated files for pyvisi and removed some incorrect reference images.

Revision 1147 - Directory Listing
Modified Wed May 16 06:39:11 2007 UTC (10 years, 4 months ago) by ksteube
Added back in some files that were accidentally deleted.


Revision 1146 - Directory Listing
Modified Wed May 16 05:07:02 2007 UTC (10 years, 4 months ago) by jongui
Removed the old version of pyvisi.

Revision 1143 - Directory Listing
Modified Wed May 16 04:49:55 2007 UTC (10 years, 4 months ago) by jongui
some cleanup.

Revision 1133 - Directory Listing
Modified Tue May 8 07:19:33 2007 UTC (10 years, 4 months ago) by gross
Changes needed for windows. This still does not work on and has not run on linux and the altix. 
 
There are a few changes in names in the scons script, in particular _libs is used rather than _lib and _libs is always a list. By default on windows MSVC is used. The location of python is at C:\Program Files\python<version>, boost at C:\Program Files\boost and netcdf at C:\Program Files\netcdf. 

 

Revision 1115 - Directory Listing
Modified Sun Apr 22 07:18:30 2007 UTC (10 years, 5 months ago) by jongui
The problem regarding the increasing use of memory when Map is instantiated is partially fixed. Some problems still persists when the Map instance invoke methods.

Therefore, the run_map.py auto test have been disabled for the time being.

Revision 1112 - Directory Listing
Modified Thu Apr 19 06:31:49 2007 UTC (10 years, 5 months ago) by jongui
Made some updates to the guide.

Revision 1111 - Directory Listing
Modified Thu Apr 19 05:28:19 2007 UTC (10 years, 5 months ago) by jongui
Some clean up.

Revision 1110 - Directory Listing
Modified Thu Apr 19 05:24:28 2007 UTC (10 years, 5 months ago) by jongui
Some test for the logo.

Revision 1108 - Directory Listing
Modified Thu Apr 19 04:02:11 2007 UTC (10 years, 5 months ago) by jongui
Added modules that allows logos (i.e. access logo) to be inserted together with the rendered object. An example on how to use the 'Logo' class has also been provided.


Revision 1103 - Directory Listing
Modified Wed Apr 18 04:31:06 2007 UTC (10 years, 5 months ago) by jongui
Some updates.

Revision 1102 - Directory Listing
Modified Tue Apr 17 07:16:49 2007 UTC (10 years, 5 months ago) by jongui
some cleanup.

Revision 1101 - Directory Listing
Modified Tue Apr 17 07:11:02 2007 UTC (10 years, 5 months ago) by jongui
Added some test for reading escript objects.

Revision 1100 - Directory Listing
Modified Tue Apr 17 05:36:24 2007 UTC (10 years, 5 months ago) by jongui
Fixed the problem related to the use of point and cell data. Both point and cell data should now be able to work properly together. i.e. plotting a velocity field using 'vector point data' but coloring the arrows using 'scalar cell data'.

Revision 1099 - Directory Listing
Modified Tue Apr 17 01:45:08 2007 UTC (10 years, 5 months ago) by jongui
Upated some examples.

Revision 1097 - Directory Listing
Modified Mon Apr 16 23:03:55 2007 UTC (10 years, 5 months ago) by jongui
Added more examples reading directly from escript objects.

Revision 1095 - Directory Listing
Modified Mon Apr 16 06:32:24 2007 UTC (10 years, 5 months ago) by jongui
Added some example scripts reading directly from escript objects.

Revision 1094 - Directory Listing
Modified Mon Apr 16 06:04:25 2007 UTC (10 years, 5 months ago) by jongui
Fixed the bug related to the use of the 'setData' method in the DataCollector. Reading directly from escript objects should now work.

Revision 1093 - Directory Listing
Modified Sun Apr 15 23:58:53 2007 UTC (10 years, 5 months ago) by jongui
Fixed a minor bug related to clipping vector and tensor data.

Revision 1091 - Directory Listing
Modified Fri Apr 13 01:26:22 2007 UTC (10 years, 5 months ago) by jongui
More updates to the guide.

Revision 1085 - Directory Listing
Modified Thu Apr 12 05:36:31 2007 UTC (10 years, 5 months ago) by jongui
More minor fixes to Camera.

Revision 1084 - Directory Listing
Modified Thu Apr 12 05:19:22 2007 UTC (10 years, 5 months ago) by jongui
Updated the guide and fixed a minor bug with the use of the Camera.

Revision 1082 - Directory Listing
Modified Wed Apr 11 22:33:52 2007 UTC (10 years, 5 months ago) by jongui
Made some updates to the guide.

Revision 1081 - Directory Listing
Modified Wed Apr 11 06:13:46 2007 UTC (10 years, 5 months ago) by jongui
Made some updates to the guide.

Revision 1079 - Directory Listing
Modified Tue Apr 10 04:27:31 2007 UTC (10 years, 5 months ago) by jongui
Updated more epydocs and the user guide. At this stage, a DataCollector should only be used to read either point data or cell data but not both. If both point and cell data are read using the same DataCollector, the object rendered may be incorrect.

Revision 1078 - Directory Listing
Modified Thu Apr 5 06:18:47 2007 UTC (10 years, 5 months ago) by jongui
Added and updated some epydocs.

Revision 1076 - Directory Listing
Modified Wed Apr 4 06:40:33 2007 UTC (10 years, 5 months ago) by jongui
Some updates.

Revision 1075 - Directory Listing
Modified Tue Apr 3 02:47:39 2007 UTC (10 years, 5 months ago) by jongui
Some minor cleanup.

Revision 1066 - Directory Listing
Modified Wed Mar 28 00:59:19 2007 UTC (10 years, 5 months ago) by ksteube
Second draft of pycad document...probably needs more work


Revision 1058 - Directory Listing
Modified Fri Mar 23 04:06:56 2007 UTC (10 years, 6 months ago) by jongui
Locator argument fixed.

Revision 1051 - Directory Listing
Modified Wed Mar 21 21:56:54 2007 UTC (10 years, 6 months ago) by jongui
Velocity module does not work properly with all types of files yet.

Revision 1045 - Directory Listing
Modified Tue Mar 20 01:30:58 2007 UTC (10 years, 6 months ago) by gross
some modifications on the pycad implementation to make it easier to build
interfaces for other mesh generators. The script statement generation is now
done by the Design and not the Primitive classes.



Revision 1044 - Directory Listing
Modified Mon Mar 19 07:29:31 2007 UTC (10 years, 6 months ago) by gross
clear name tagging is supported now.

Revision 1035 - Directory Listing
Modified Fri Mar 16 04:54:17 2007 UTC (10 years, 6 months ago) by jongui
Performed some cleanup of old files.

Revision 1004 - Directory Listing
Modified Thu Mar 1 04:57:31 2007 UTC (10 years, 6 months ago) by jongui
Updated the epydocs, comments and organized codes to ease readability.

Revision 1002 - Directory Listing
Modified Wed Feb 28 06:51:33 2007 UTC (10 years, 6 months ago) by jongui
Included some try/except statements for error checking and some documentation. Also fixed a bug in DataCollector.

Revision 1001 - Directory Listing
Modified Wed Feb 28 01:15:27 2007 UTC (10 years, 6 months ago) by jongui
Added diffusion_with_pyvisi.py, but the reading of multiple temporary files (created in the background) appears not to work properly. The first file is always displayed.

Revision 999 - Directory Listing
Modified Tue Feb 27 08:12:37 2007 UTC (10 years, 6 months ago) by gross
start to put some pycad documentation into the users guide

Revision 993 - Directory Listing
Modified Fri Feb 23 06:39:38 2007 UTC (10 years, 6 months ago) by gross
problem with undefined value fixed.

Revision 983 - Directory Listing
Modified Tue Feb 20 02:49:08 2007 UTC (10 years, 7 months ago) by gross
full Data object dump and load now available. Tests added.

Revision 971 - Directory Listing
Modified Wed Feb 14 04:40:49 2007 UTC (10 years, 7 months ago) by ksteube
Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.



Revision 969 - Directory Listing
Modified Tue Feb 13 23:02:23 2007 UTC (10 years, 7 months ago) by ksteube
Parallelization using MPI for solution of implicit problems.

Parallelization for explicit problems has already been accomplished in
the main SVN branch.

This is incomplete and is not ready for use.



Revision 961 - Directory Listing
Modified Tue Feb 13 01:58:48 2007 UTC (10 years, 7 months ago) by jongui
Tidied up some codes

Revision 889 - Directory Listing
Modified Tue Nov 7 23:42:31 2006 UTC (10 years, 10 months ago) by jongui
drivers added

Revision 886 - Directory Listing
Modified Thu Nov 2 01:34:58 2006 UTC (10 years, 10 months ago) by jongui
- Fixed a couple of minor bugs but the bug relating to the plane normal still exists.
- Updated the documentation.


Revision 882 - Directory Listing
Modified Fri Oct 27 08:15:33 2006 UTC (10 years, 10 months ago) by jongui
Fixed some bugs in the camera module but yet to fix bugs in the plane module.


Revision 879 - Directory Listing
Modified Wed Oct 25 03:56:34 2006 UTC (10 years, 10 months ago) by jongui
First prototype of pyvisi is almost done (testing to be done). 
Added all the epydocs and latex files.


Revision 809 - Directory Listing
Modified Sun Aug 13 22:10:03 2006 UTC (11 years, 1 month ago) by gross
update of user guide'


Revision 808 - Directory Listing
Modified Fri Aug 11 01:25:16 2006 UTC (11 years, 1 month ago) by ksteube
Can now build escript and use doxygen on shake71



Revision 804 - Directory Listing
Modified Thu Aug 10 01:12:16 2006 UTC (11 years, 1 month ago) by gross
the new function swap_axes + tests added. (It replaces swap).



Revision 790 - Directory Listing
Modified Wed Jul 26 23:12:34 2006 UTC (11 years, 1 month ago) by bcumming
changes to escript/py_src/pdetools.py and /escript/src/Data.h/.cpp to
make the Locator work in MPI. escript::Data::mindp now returns a 3 tuple,
with the MPI rank of the process on which the minimum value occurs
included. escript::Data::convertToNumArrayFromDPNo also takes the ProcNo
to perform the MPI reduction.

This had to be implemented in both the MPI and non-MPI versions to allow
the necesary changes to the Python code in pdetools.py. In the non-MPI
version ProcNo is set to 0. This works for the explicit scripts tested
thus far, however if it causes problems in your scripts contact Ben or
Lutz, or revert the three files (pdetools.py, Data.h and Data.cpp) to
the previous version.  



Revision 771 - Directory Listing
Modified Tue Jul 4 05:39:42 2006 UTC (11 years, 2 months ago) by ksteube
deleted test files



Revision 770 - Directory Listing
Modified Tue Jul 4 05:37:36 2006 UTC (11 years, 2 months ago) by ksteube
Ken's initial import

Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (11 years, 2 months ago) by woo409
+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)


Revision 737 - Directory Listing
Modified Wed Jun 14 04:00:41 2006 UTC (11 years, 3 months ago) by ksteube
Added a caution to be sure to set OMP_NUM_THREADS,
if unset you will get too many threads.

Also fixed a few spelling mistakes.



Revision 736 - Directory Listing
Modified Wed Jun 14 03:49:58 2006 UTC (11 years, 3 months ago) by ksteube
Fixed a couple spelling errors



Revision 734 - Directory Listing
Modified Tue Jun 13 03:55:25 2006 UTC (11 years, 3 months ago) by ksteube
Removed test file



Revision 733 - Directory Listing
Modified Tue Jun 13 03:55:10 2006 UTC (11 years, 3 months ago) by ksteube
Test file



Revision 723 - Directory Listing
Modified Wed May 3 10:29:16 2006 UTC (11 years, 4 months ago) by gross
some installation notes added to users guide

Revision 722 - Directory Listing
Modified Mon May 1 11:49:18 2006 UTC (11 years, 4 months ago) by gross
abstract added in users guide added

Revision 712 - Directory Listing
Modified Thu Apr 27 02:08:50 2006 UTC (11 years, 4 months ago) by elspeth
Fixed build of epydoc documentation. Now builds html in relase/doc/epydoc .


Revision 708 - Directory Listing
Modified Mon Apr 24 03:40:49 2006 UTC (11 years, 5 months ago) by gross
missing file added

Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (11 years, 5 months ago) by gross
latex build documentation is working now

Revision 704 - Directory Listing
Modified Thu Apr 6 02:27:37 2006 UTC (11 years, 5 months ago) by gross
some missing files (but they will be removed later)

Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (11 years, 5 months ago) by robwdcock
+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3



Revision 660 - Directory Listing
Modified Fri Mar 24 08:43:21 2006 UTC (11 years, 6 months ago) by gross
that does not look to bad now although more stuff could be added.

Revision 653 - Directory Listing
Modified Fri Mar 24 07:34:34 2006 UTC (11 years, 6 months ago) by gross
linearPDE docu fixed

Revision 643 - Directory Listing
Modified Fri Mar 24 00:28:41 2006 UTC (11 years, 6 months ago) by elspeth
More copyright info added.


Revision 625 - Directory Listing
Modified Thu Mar 23 00:41:25 2006 UTC (11 years, 6 months ago) by gross
some updates and linearPDE.tex switched off

Revision 606 - Directory Listing
Modified Mon Mar 20 23:34:00 2006 UTC (11 years, 6 months ago) by gross
documentation on pyvisi added

Revision 599 - Directory Listing
Modified Fri Mar 17 05:48:59 2006 UTC (11 years, 6 months ago) by gross
update on escript function

Revision 598 - Directory Listing
Modified Fri Mar 17 05:00:24 2006 UTC (11 years, 6 months ago) by gross
edable versions

Revision 597 - Directory Listing
Modified Fri Mar 17 04:42:57 2006 UTC (11 years, 6 months ago) by gross


Revision 593 - Directory Listing
Modified Tue Mar 14 02:50:27 2006 UTC (11 years, 6 months ago) by gross
updates on escript documentation (unfinished)

Revision 592 - Directory Listing
Modified Mon Mar 13 04:04:26 2006 UTC (11 years, 6 months ago) by lkettle
Adding some figure for online documentation (3D Wave Propagation).


Revision 586 - Directory Listing
Modified Fri Mar 10 01:24:27 2006 UTC (11 years, 6 months ago) by lkettle
corrected error in natural b.c.


Revision 582 - Directory Listing
Modified Wed Mar 8 05:54:06 2006 UTC (11 years, 6 months ago) by lkettle
Changed example script for wave.py to a point source wave propagation problem in 3D.


Revision 581 - Directory Listing
Modified Wed Mar 8 05:48:51 2006 UTC (11 years, 6 months ago) by lkettle
changes to section 2.3 on 3D wave propagation in online reference guide and added some figures


Revision 579 - Directory Listing
Modified Tue Mar 7 01:28:23 2006 UTC (11 years, 6 months ago) by gross
new section on lame equation completed

Revision 578 - Directory Listing
Modified Mon Mar 6 06:12:04 2006 UTC (11 years, 6 months ago) by gross
new section in the tutorial

Revision 575 - Directory Listing
Modified Fri Mar 3 03:33:07 2006 UTC (11 years, 6 months ago) by lkettle
I have changed some of the documentation and added more explanations for
the online reference guide for esys13. I have modified two of the
example source codes to write out the results for Helmholtz problem and
changed one variable name in the diffusion.py code to avoid confusion.


Revision 573 - Directory Listing
Modified Thu Mar 2 00:42:53 2006 UTC (11 years, 6 months ago) by lkettle
I have made a few changes to the documentation for the online reference
guide for the Poisson and diffusion examples.


Revision 572 - Directory Listing
Modified Wed Mar 1 04:40:10 2006 UTC (11 years, 6 months ago) by gross
some fixes to get Latex compiled

Revision 569 - Directory Listing
Modified Tue Feb 28 05:34:37 2006 UTC (11 years, 6 months ago) by gross
modified presentation of LinearPDE

Revision 568 - Directory Listing
Modified Tue Feb 28 03:59:06 2006 UTC (11 years, 6 months ago) by gross
update

Revision 567 - Directory Listing
Modified Tue Feb 28 03:58:05 2006 UTC (11 years, 6 months ago) by gross
updates examples

Revision 566 - Directory Listing
Modified Tue Feb 28 03:52:29 2006 UTC (11 years, 6 months ago) by gross
rename

Revision 565 - Directory Listing
Modified Mon Feb 27 00:04:17 2006 UTC (11 years, 6 months ago) by gross
some updates

Revision 498 - Directory Listing
Modified Tue Feb 7 01:53:47 2006 UTC (11 years, 7 months ago) by jgs
can now specify target "build_docs" in order to build
epydoc and doxygen documentation


Revision 489 - Directory Listing
Modified Thu Feb 2 06:27:15 2006 UTC (11 years, 7 months ago) by jgs
fix message file paths

Revision 488 - Directory Listing
Modified Thu Feb 2 06:19:23 2006 UTC (11 years, 7 months ago) by jgs
build rundoxygen/runepydoc scripts on the fly based on platform dependant locations of these utilities

Revision 485 - Directory Listing
Modified Thu Feb 2 04:21:02 2006 UTC (11 years, 7 months ago) by jgs
change scons files to match new esys_options based format

Revision 369 - Directory Listing
Modified Fri Dec 16 00:51:22 2005 UTC (11 years, 9 months ago) by cochrane
Building of API documentation now works.  Both epydoc- and doxygen-generated
docs are built.


Revision 354 - Directory Listing
Modified Wed Dec 14 04:46:17 2005 UTC (11 years, 9 months ago) by cochrane
Fixed paths for new running of docs autobuild.


Revision 343 - Directory Listing
Modified Tue Dec 13 03:39:42 2005 UTC (11 years, 9 months ago) by jgs
create build directory structure for documentation

Revision 327 - Directory Listing
Modified Wed Dec 7 04:32:28 2005 UTC (11 years, 9 months ago) by gross
make them run again

Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (11 years, 10 months ago) by jgs
Copied from: trunk/esys2/doc revision 154
move all directories from trunk/esys2 into trunk and remove esys2


Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (12 years ago) by jgs
Original Path: trunk/esys2/doc
Merge of development branch dev-02 back to main trunk on 2005-09-01


Revision 122 - Directory Listing
Modified Thu Jun 9 05:38:05 2005 UTC (12 years, 3 months ago) by jgs
Original Path: trunk/esys2/doc
Merge of development branch back to main trunk on 2005-06-09


Revision 121 - Directory Listing
Modified Fri May 6 04:26:16 2005 UTC (12 years, 4 months ago) by jgs
Original Path: trunk/esys2/doc
Merge of development branch back to main trunk on 2005-05-06


Revision 117 - Directory Listing
Modified Fri Apr 1 05:48:57 2005 UTC (12 years, 5 months ago) by jgs
Original Path: trunk/esys2/doc
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Revision 113 - Directory Listing
Modified Mon Feb 28 07:06:33 2005 UTC (12 years, 6 months ago) by jgs
Original Path: trunk/esys2/doc
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Revision 110 - Directory Listing
Modified Mon Feb 14 04:14:42 2005 UTC (12 years, 7 months ago) by jgs
Original Path: trunk/esys2/doc
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Revision 108 - Directory Listing
Modified Thu Jan 27 06:21:59 2005 UTC (12 years, 7 months ago) by jgs
Original Path: trunk/esys2/doc
*** empty log message ***


Revision 107 - Directory Listing
Modified Thu Jan 27 06:21:48 2005 UTC (12 years, 7 months ago) by jgs
Original Path: trunk/esys2/doc
commit of branch dev-01 back to main trunk on 2005-01-27


Revision 104 - Directory Listing
Modified Fri Dec 17 07:43:12 2004 UTC (12 years, 9 months ago) by jgs
Original Path: trunk/esys2/doc
*** empty log message ***


Revision 102 - Directory Listing
Modified Wed Dec 15 07:08:39 2004 UTC (12 years, 9 months ago) by jgs
Original Path: trunk/esys2/doc
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Revision 100 - Directory Listing
Modified Wed Dec 15 03:48:48 2004 UTC (12 years, 9 months ago) by jgs
Original Path: trunk/esys2/doc
*** empty log message ***


Revision 97 - Directory Listing
Modified Tue Dec 14 05:39:33 2004 UTC (12 years, 9 months ago) by jgs
Original Path: trunk/esys2/doc
*** empty log message ***


Revision 82 - Directory Listing
Added Tue Oct 26 06:53:54 2004 UTC (12 years, 10 months ago) by jgs
Original Path: trunk/esys2/doc
Initial revision


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