[escript] Log of /trunk/doc

Revision 3148 - Directory Listing
Modified Fri Sep 3 02:09:47 2010 UTC (8 years, 5 months ago) by jfenwick

Another attempt to patch the X issue

Revision 3142 - Directory Listing
Modified Thu Sep 2 23:58:47 2010 UTC (8 years, 5 months ago) by jfenwick

Trying to fix X problem

Revision 3135 - Directory Listing
Modified Thu Sep 2 03:28:39 2010 UTC (8 years, 5 months ago) by ahallam

Updates to cookbook scripts. Gravitation Examples.

Revision 3099 - Directory Listing
Modified Sun Aug 22 04:35:15 2010 UTC (8 years, 6 months ago) by ahallam

Gravitational Potential Example- Needs some tuning.

Revision 3094 - Directory Listing
Modified Fri Aug 13 08:38:06 2010 UTC (8 years, 6 months ago) by gross

The MPI and sequational GAUSS_SEIDEL have been merged.
The couring and main diagonal pointer is now manged by the patternm which means that they are calculated once only even if the preconditioner is deleted.

Revision 3089 - Directory Listing
Modified Mon Aug 9 07:20:58 2010 UTC (8 years, 6 months ago) by ahallam

Updates to example scripts - should now be working except for example09b.py which needs more memory.

Revision 3083 - Directory Listing
Modified Tue Aug 3 06:34:35 2010 UTC (8 years, 6 months ago) by caltinay

Updated some svn:ignore props.

Revision 3078 - Directory Listing
Modified Tue Aug 3 03:12:16 2010 UTC (8 years, 6 months ago) by jfenwick

Switched the build_dir keyword param to variant_dir.
Should fix issue 525.

Revision 3075 - Directory Listing
Modified Wed Jul 28 02:51:20 2010 UTC (8 years, 6 months ago) by ahallam

Updates to cookbook example. Lumping turned off for order 2 models until bug resolves.

Revision 3073 - Directory Listing
Modified Mon Jul 26 06:10:50 2010 UTC (8 years, 6 months ago) by jfenwick

Rename files to fix build problem

Revision 3072 - Directory Listing
Modified Fri Jul 23 07:10:03 2010 UTC (8 years, 7 months ago) by gross

wrong file

Revision 3071 - Directory Listing
Modified Wed Jul 21 05:37:30 2010 UTC (8 years, 7 months ago) by gross

new darcy flux

Revision 3070 - Directory Listing
Modified Wed Jul 21 04:09:58 2010 UTC (8 years, 7 months ago) by jfenwick

Fixord

Revision 3069 - Directory Listing
Modified Wed Jul 21 03:24:48 2010 UTC (8 years, 7 months ago) by ahallam

Updates to layer cake and cookbook as well as examples.

Revision 3068 - Directory Listing
Modified Mon Jul 19 00:43:31 2010 UTC (8 years, 7 months ago) by ahallam

Missing Figures

Revision 3067 - Directory Listing
Modified Mon Jul 19 00:40:37 2010 UTC (8 years, 7 months ago) by ahallam

Cookbook Updates - Chapter 9 - New figures.

Revision 3066 - Directory Listing
Modified Sun Jul 18 23:32:07 2010 UTC (8 years, 7 months ago) by ahallam

Missing Picture causing errors.

Revision 3065 - Directory Listing
Modified Thu Jul 15 02:59:27 2010 UTC (8 years, 7 months ago) by ahallam

Updates to newer examples.

Revision 3064 - Directory Listing
Modified Thu Jul 15 02:58:23 2010 UTC (8 years, 7 months ago) by ahallam

Updates to cookbook with fixed images and new chaper for 3d seismic model. New chapter is now added.

Revision 3063 - Directory Listing
Modified Thu Jul 15 02:57:46 2010 UTC (8 years, 7 months ago) by ahallam

Updates to cookbook with fixed images and new chaper for 3d seismic model.

Revision 3058 - Directory Listing
Modified Tue Jul 6 02:13:14 2010 UTC (8 years, 7 months ago) by ahallam

Revision 3057 - Directory Listing
Modified Tue Jul 6 02:10:59 2010 UTC (8 years, 7 months ago) by ahallam

Revision 3055 - Directory Listing
Modified Sun Jul 4 21:52:36 2010 UTC (8 years, 7 months ago) by ahallam

3d wave equation and ABC

Revision 3054 - Directory Listing
Modified Wed Jun 30 02:22:25 2010 UTC (8 years, 7 months ago) by ahallam

Missing Figures...

Revision 3053 - Directory Listing
Modified Tue Jun 29 01:31:31 2010 UTC (8 years, 7 months ago) by jfenwick

Fixes to deal with new savanna configuration.
Blocking out missing images.

Revision 3029 - Directory Listing
Modified Fri May 21 02:01:37 2010 UTC (8 years, 9 months ago) by ahallam

small updates and work on seismic code

Revision 3025 - Directory Listing
Modified Thu May 6 01:20:46 2010 UTC (8 years, 9 months ago) by ahallam

Updates to wave equation examples. Pressure wave examples should be completed now. Working on seismic wave examples. Cookbook chapter for pressure wave examples also added.

Revision 3004 - Directory Listing
Modified Wed Apr 14 05:27:30 2010 UTC (8 years, 10 months ago) by ahallam

Sampling theorem, stability requirements, Laplacian discussion, Pressure wave PDE

Revision 3003 - Directory Listing
Modified Wed Apr 7 02:29:57 2010 UTC (8 years, 10 months ago) by ahallam

Pressure wave working, accelleration example, new entries to cookbook for example 7.

Revision 3002 - Directory Listing
Modified Wed Apr 7 02:25:45 2010 UTC (8 years, 10 months ago) by gross

gmsh now supports the Mesh.SubdivisionAlgorithm and Mesh.Algorithm3D option.
The Mesh.Algorithm, Mesh.Smoothing, Mesh.Optimization options are now set in the
.geo file rather than in the command line.

Revision 3001 - Directory Listing
Modified Wed Mar 31 04:29:10 2010 UTC (8 years, 10 months ago) by ahallam

Pressue wave problem, looking at sampling theorem, and Crank-Nicolson

Revision 2982 - Directory Listing
Modified Wed Mar 10 04:27:47 2010 UTC (8 years, 11 months ago) by caltinay

Some minor corrections to the cookbook (mainly word repetitions and typos).

Revision 2980 - Directory Listing
Modified Tue Mar 9 03:50:58 2010 UTC (8 years, 11 months ago) by artak

minor change to fix latest bug

Revision 2979 - Directory Listing
Modified Tue Mar 9 02:54:32 2010 UTC (8 years, 11 months ago) by ahallam

cookbook review final final 3.1 - artak and tony corrections

Revision 2978 - Directory Listing
Modified Tue Mar 9 02:11:07 2010 UTC (8 years, 11 months ago) by artak

minor

Revision 2977 - Directory Listing
Modified Tue Mar 9 00:33:28 2010 UTC (8 years, 11 months ago) by ahallam

cookbook review final 3.1

Revision 2976 - Directory Listing
Modified Mon Mar 8 01:18:33 2010 UTC (8 years, 11 months ago) by artak

Lame equation is corrected. Options for using smoother in AMG is added. A book on AMG is cited for standard coarsening.

Revision 2975 - Directory Listing
Modified Thu Mar 4 05:44:12 2010 UTC (8 years, 11 months ago) by ahallam

Cookbook modifications Review -> Not quite finished yet.
New figure.

Revision 2974 - Directory Listing
Modified Thu Mar 4 03:09:35 2010 UTC (8 years, 11 months ago) by artak

forgot to skip example06.py as well

Revision 2973 - Directory Listing
Modified Thu Mar 4 03:07:22 2010 UTC (8 years, 11 months ago) by artak

example05c.py is not tested if matplotlib library version is too old, where quiver() does not support angle parameter.

Revision 2972 - Directory Listing
Modified Thu Mar 4 01:33:38 2010 UTC (8 years, 11 months ago) by artak

DONE. Einstain Summation Convention (ESC, what an irony, reminds me ESC button) is removed from cookbook as it is not used anywhere in the cookbook.

Revision 2971 - Directory Listing
Modified Wed Mar 3 23:19:00 2010 UTC (8 years, 11 months ago) by jfenwick

I hate voodoo.
Putting pdfinfo directive in two places in the cookbook header so that
both versions of evince get the right title.

Revision 2969 - Directory Listing
Modified Wed Mar 3 04:27:00 2010 UTC (8 years, 11 months ago) by artak

reached Chapter 4

Revision 2964 - Directory Listing
Modified Wed Mar 3 01:21:09 2010 UTC (8 years, 11 months ago) by artak

up to Chapter 3

Revision 2963 - Directory Listing
Modified Wed Mar 3 01:10:11 2010 UTC (8 years, 11 months ago) by artak

up to section 2.1.9

Revision 2961 - Directory Listing
Modified Wed Mar 3 00:56:59 2010 UTC (8 years, 11 months ago) by jfenwick

Hacking cookbook

Revision 2960 - Directory Listing
Modified Tue Mar 2 07:54:11 2010 UTC (8 years, 11 months ago) by gross

new DarcyFlux solver

Revision 2959 - Directory Listing
Modified Tue Mar 2 06:27:17 2010 UTC (8 years, 11 months ago) by artak

more corrections on exmaple 1, up to section 2.1.5

Revision 2958 - Directory Listing
Modified Tue Mar 2 06:00:39 2010 UTC (8 years, 11 months ago) by artak

more corrections on exmaple 1, up to section 2.1.5

Revision 2957 - Directory Listing
Modified Tue Mar 2 01:28:19 2010 UTC (8 years, 11 months ago) by artak

more corrections

Revision 2956 - Directory Listing
Modified Mon Mar 1 01:31:59 2010 UTC (8 years, 11 months ago) by artak

First corrections: NEEDS MORE AND MORE...

Revision 2955 - Directory Listing
Modified Mon Mar 1 00:54:37 2010 UTC (8 years, 11 months ago) by jfenwick

Fix hackscore error

Revision 2953 - Directory Listing
Modified Thu Feb 25 10:00:23 2010 UTC (8 years, 11 months ago) by gross

final touch to the naming in the cookbook

Revision 2952 - Directory Listing
Modified Thu Feb 25 09:52:10 2010 UTC (8 years, 11 months ago) by gross

even more renaming in the cookbook

Revision 2951 - Directory Listing
Modified Thu Feb 25 07:43:40 2010 UTC (8 years, 11 months ago) by gross

more renaming in the cookbook

Revision 2950 - Directory Listing
Modified Thu Feb 25 07:33:16 2010 UTC (8 years, 11 months ago) by gross

more renames in the cookbook.

Revision 2949 - Directory Listing
Modified Thu Feb 25 05:23:11 2010 UTC (8 years, 11 months ago) by gross

renaming examples part 1

Revision 2948 - Directory Listing
Modified Thu Feb 25 04:54:30 2010 UTC (8 years, 11 months ago) by gross

a new almost completed version of the cookbook

Revision 2944 - Directory Listing
Modified Tue Feb 23 23:51:20 2010 UTC (8 years, 11 months ago) by jfenwick

Fix latex markup in pdf title.
It turns out \pdfinfo must come after \maketitle if you don't want the
latex version of the title.

This behaviour does not happen in evince 2.22.2 (standard in lenny) but does
happen in more recent versions.

Revision 2943 - Directory Listing
Modified Tue Feb 23 01:49:27 2010 UTC (8 years, 11 months ago) by artak

VTK as a required package is removed from cookbook

Revision 2942 - Directory Listing
Modified Mon Feb 22 05:43:44 2010 UTC (9 years ago) by caltinay

Fixed a small typo in the cookbook abstract.

Revision 2936 - Directory Listing
Modified Mon Feb 15 03:29:53 2010 UTC (9 years ago) by gross

some clarification added.

Revision 2935 - Directory Listing
Modified Mon Feb 15 03:15:59 2010 UTC (9 years ago) by gross

pycad support 3D transfinite meshing now.

Revision 2931 - Directory Listing
Modified Mon Feb 8 06:45:41 2010 UTC (9 years ago) by gross

more changes on the cookbook

Revision 2923 - Directory Listing
Modified Thu Feb 4 04:05:36 2010 UTC (9 years ago) by jfenwick

Bringing non-release specific things from stage3.1 r2922 back to trunk

Revision 2914 - Directory Listing
Modified Wed Feb 3 05:38:12 2010 UTC (9 years ago) by gross

missing import added.

Revision 2913 - Directory Listing
Modified Wed Feb 3 04:30:46 2010 UTC (9 years ago) by gross

type fixed

Revision 2911 - Directory Listing
Modified Wed Feb 3 03:30:40 2010 UTC (9 years ago) by jfenwick

Changed name of launcher and rotated figure correctly.

Revision 2907 - Directory Listing
Modified Wed Feb 3 01:39:15 2010 UTC (9 years ago) by gross

needdirs replaced by mkDir from esys.escript

Revision 2906 - Directory Listing
Modified Tue Feb 2 05:26:03 2010 UTC (9 years ago) by gross

some minor :-) fix.

Revision 2905 - Directory Listing
Modified Tue Feb 2 04:26:42 2010 UTC (9 years ago) by gross

some missing files.

Revision 2904 - Directory Listing
Modified Tue Feb 2 04:21:52 2010 UTC (9 years ago) by gross

more revision on cookbook: example 1 and 2 have been swapped.

Revision 2881 - Directory Listing
Modified Thu Jan 28 02:03:15 2010 UTC (9 years ago) by jfenwick

Don't panic.
Updating copyright stamps

Revision 2878 - Directory Listing
Modified Thu Jan 28 00:59:30 2010 UTC (9 years ago) by gross

more work on cookbook review

Revision 2872 - Directory Listing
Modified Wed Jan 27 00:59:58 2010 UTC (9 years ago) by artak

/home/ changed to /Users/ for mac

Revision 2870 - Directory Listing
Modified Mon Jan 25 08:34:15 2010 UTC (9 years ago) by gross

more review on the cookbook.

Revision 2868 - Directory Listing
Modified Mon Jan 25 04:44:45 2010 UTC (9 years ago) by artak

Some fixes for 3.1 release. Notes about Snow Leopard is added and installing from ports removed.

Revision 2867 - Directory Listing
Modified Fri Jan 22 06:28:02 2010 UTC (9 years, 1 month ago) by gross

now option -i is used if no script is given

Revision 2864 - Directory Listing
Modified Fri Jan 22 03:09:55 2010 UTC (9 years, 1 month ago) by gross

projector added to users guide

Revision 2862 - Directory Listing
Modified Thu Jan 21 04:45:39 2010 UTC (9 years, 1 month ago) by gross

more review in the cookbook

Revision 2861 - Directory Listing
Modified Wed Jan 20 02:47:42 2010 UTC (9 years, 1 month ago) by gross

some modification to the cookbook

Revision 2851 - Directory Listing
Modified Fri Jan 15 07:37:47 2010 UTC (9 years, 1 month ago) by gross

typos fixed.

Revision 2843 - Directory Listing
Modified Thu Jan 14 05:51:28 2010 UTC (9 years, 1 month ago) by gross

new compressible solver

Revision 2829 - Directory Listing
Modified Wed Jan 6 02:51:31 2010 UTC (9 years, 1 month ago) by ahallam

minor updates to cookbook

Revision 2801 - Directory Listing
Modified Thu Dec 3 01:45:48 2009 UTC (9 years, 2 months ago) by ahallam

Final updates to first 3 chapters of cookbook before moving on to linear elastic wave equation examples.

Revision 2800 - Directory Listing
Modified Thu Dec 3 01:45:12 2009 UTC (9 years, 2 months ago) by ahallam

Getting rid of unneeded directories

Revision 2793 - Directory Listing
Modified Tue Dec 1 06:10:10 2009 UTC (9 years, 2 months ago) by gross

some new util functions

Revision 2781 - Directory Listing
Modified Thu Nov 26 04:12:11 2009 UTC (9 years, 2 months ago) by jfenwick

Some additional info from Thomas

Revision 2780 - Directory Listing
Modified Thu Nov 26 03:54:24 2009 UTC (9 years, 2 months ago) by jfenwick

Put the windows instructions back in.
Put more detail in the MPI hints.

Revision 2776 - Directory Listing
Modified Wed Nov 25 23:41:16 2009 UTC (9 years, 2 months ago) by jfenwick

Switching tests which read gmsh to not run under MPI

Revision 2775 - Directory Listing
Modified Wed Nov 25 05:01:43 2009 UTC (9 years, 2 months ago) by ahallam

minor updates to cookbook; new python syntax highlighting

Revision 2772 - Directory Listing
Modified Wed Nov 25 02:02:50 2009 UTC (9 years, 2 months ago) by ahallam

Fixed auto build error for heatrefraction_mesher002.py

Added clear figure line for run_heatrefraction.py process.

Revision 2766 - Directory Listing
Modified Mon Nov 23 05:10:53 2009 UTC (9 years, 3 months ago) by jfenwick

inf, sup and Lsup now correctly handle +-infinity.
They also will return NaN if any part of their input is NaN.

This will break unit tests since it exposes the hidden bug (#447 in mantis)

This code relies on the ability to test for NaNs.
To do this it makes use of macros and functions from C99.
If you do not have a C99 compiler, then you will probably get the old behaviour.
That is, you won't know when you have NaNs.


Also did minor tweak to saveDataCSV doco.

Revision 2758 - Directory Listing
Modified Thu Nov 19 04:21:55 2009 UTC (9 years, 3 months ago) by caltinay

Added missing imports. all_tests still fails though due to other problems.

Revision 2748 - Directory Listing
Modified Tue Nov 17 07:32:59 2009 UTC (9 years, 3 months ago) by gross

Macro elements are implemented now. VTK writer for macro elements still needs testing.

Revision 2742 - Directory Listing
Modified Thu Nov 12 06:03:37 2009 UTC (9 years, 3 months ago) by jfenwick

Merging changes from the lapack branch.

The inverse() operation has been moved into c++. [No lazy support for this operation yet.]
Optional Lapack support has been added for matrices larger than 3x3. 
service0 is set to use mkl_lapack.

Revision 2738 - Directory Listing
Modified Fri Nov 6 05:33:13 2009 UTC (9 years, 3 months ago) by jfenwick

Taipan and DataVector use size_type (currently long) internally to talk 
about sizes.
[A lot more work needs to be done on this].
Exceptions now give nicer messages and output the problematic numbers.

Some minor doco errors fixed.

escript.util.mkDir
Now checks to see if the pathname already exists as a non-directory.
On suggestion from slanger it now calls makedirs.

Revision 2736 - Directory Listing
Modified Mon Nov 2 04:15:27 2009 UTC (9 years, 3 months ago) by caltinay

Fixed a couple of typos.

Revision 2722 - Directory Listing
Modified Fri Oct 16 06:45:01 2009 UTC (9 years, 4 months ago) by gross

First steps towards macro elements. at the monent a  macro element is identical to its counterpart of 2nd order.

Revision 2719 - Directory Listing
Modified Wed Oct 14 06:38:03 2009 UTC (9 years, 4 months ago) by gross

a new Stokes solver added

Revision 2718 - Directory Listing
Modified Wed Oct 14 04:03:27 2009 UTC (9 years, 4 months ago) by gross

syntax errors fixed.

Revision 2717 - Directory Listing
Modified Wed Oct 14 03:41:20 2009 UTC (9 years, 4 months ago) by gross

implements https://mantis.esscc.uq.edu.au/view.php?id=426

Revision 2706 - Directory Listing
Modified Fri Oct 2 02:15:04 2009 UTC (9 years, 4 months ago) by jfenwick

Perhaps this will stop the cookbook from hating me.

Revision 2698 - Directory Listing
Modified Wed Sep 30 01:46:31 2009 UTC (9 years, 4 months ago) by jfenwick

Removing extension from some image filenames

Revision 2697 - Directory Listing
Modified Wed Sep 30 01:29:22 2009 UTC (9 years, 4 months ago) by jfenwick

Trying to get cookbook scripts passing.
Split cblib in two to avoid importing pylab in scripts which
don't otheriwse need it.

Revision 2695 - Directory Listing
Modified Tue Sep 29 06:29:12 2009 UTC (9 years, 4 months ago) by gross

pycad passes on more infromation from gmsh now.

Revision 2694 - Directory Listing
Modified Tue Sep 29 06:00:44 2009 UTC (9 years, 4 months ago) by gross

some hint on how to access gmsh error messages added.

Revision 2690 - Directory Listing
Modified Tue Sep 29 05:23:41 2009 UTC (9 years, 4 months ago) by gross

some description on gmsh reader added.

Revision 2685 - Directory Listing
Modified Tue Sep 29 02:22:30 2009 UTC (9 years, 4 months ago) by gross

these files are not needed

Revision 2684 - Directory Listing
Modified Tue Sep 29 02:21:11 2009 UTC (9 years, 4 months ago) by gross

added missing file

Revision 2683 - Directory Listing
Modified Tue Sep 29 02:20:22 2009 UTC (9 years, 4 months ago) by gross

documentation for pycad added.

Revision 2681 - Directory Listing
Modified Thu Sep 24 03:04:04 2009 UTC (9 years, 4 months ago) by ahallam

proof reading and review of cookbook, minor changes only + updated depth profiles to cb from last week

Revision 2677 - Directory Listing
Modified Tue Sep 22 00:48:00 2009 UTC (9 years, 5 months ago) by jfenwick

Removed stuff in user guide about needing to make table larger to allow
boundary points.
The table interpolation is now OMP parallel.

Revision 2676 - Directory Listing
Modified Mon Sep 21 08:06:37 2009 UTC (9 years, 5 months ago) by gross

FaultSystem: MaxValue and MinValue return now a Locator. This makes it possible to extract values of from other data objects at the location of the min/max value

Revision 2675 - Directory Listing
Modified Mon Sep 21 02:32:17 2009 UTC (9 years, 5 months ago) by gross

getMinValue added to the fault system.

Revision 2674 - Directory Listing
Modified Mon Sep 21 00:37:18 2009 UTC (9 years, 5 months ago) by jfenwick

Base matplotlib tests on version number.
This will stop the Mac trying to run some tests it can't execute.

Revision 2672 - Directory Listing
Modified Fri Sep 18 01:46:47 2009 UTC (9 years, 5 months ago) by ahallam

Heat refraction updates : alex's downhole profiles

Revision 2668 - Directory Listing
Modified Thu Sep 17 04:04:09 2009 UTC (9 years, 5 months ago) by gross

some clarification in the table interpolation

Revision 2667 - Directory Listing
Modified Thu Sep 17 01:49:11 2009 UTC (9 years, 5 months ago) by jfenwick

Renamed the main cookbook tex file to match our convention.
Replaced doc/cookbook/figures/heatrefraction002contqu.pdf with
a version which is actually pdf. However it needs to be regnerated since
it it sideways.

The examples have had their copyright notices fixed (dates were too early).
sb2.py has been removed since it uses pyvisi.

scons will now build the cookbook as parts of a docs build.
Also in reposnse to :
scons cookbook_pdf

Revision 2663 - Directory Listing
Modified Tue Sep 15 06:04:44 2009 UTC (9 years, 5 months ago) by gross

finally there is a 3D version for the fault system class

Revision 2658 - Directory Listing
Modified Thu Sep 10 02:58:44 2009 UTC (9 years, 5 months ago) by ahallam

Updates to all files scripts to support MPI testing proceedure. Updates to cookbook, new section on functino spaces/domains (needs work). Finalising first 3 chapters for editing.

Revision 2657 - Directory Listing
Modified Thu Sep 10 00:58:19 2009 UTC (9 years, 5 months ago) by jfenwick

Fixed some spelling errors.
Added text about parallel vis.

Revision 2656 - Directory Listing
Modified Wed Sep 9 23:47:10 2009 UTC (9 years, 5 months ago) by jfenwick

Fixing doco compile bug

Revision 2655 - Directory Listing
Modified Tue Sep 8 23:31:32 2009 UTC (9 years, 5 months ago) by gross

a comma is missing.

Revision 2654 - Directory Listing
Modified Tue Sep 8 07:11:12 2009 UTC (9 years, 5 months ago) by gross

2D fault systems are now working. 3D still needs work.

Revision 2651 - Directory Listing
Modified Mon Sep 7 03:39:45 2009 UTC (9 years, 5 months ago) by jfenwick

Fixed latex compile error.
Fixed some overful hboxes

Revision 2648 - Directory Listing
Modified Mon Sep 7 00:06:15 2009 UTC (9 years, 5 months ago) by jfenwick

ecording some changes related to Anthony's cookbook.
These tests still do not run.

test_heatref.py is the current problem.
Current problems include:
undefined symbols
a dependence on X somehow.

I've already addressed the matplotlib X thing somewhere else.
Find and apply.

Revision 2647 - Directory Listing
Modified Fri Sep 4 05:25:25 2009 UTC (9 years, 5 months ago) by gross

fault system add. There is still an example for the usage missing.

Revision 2646 - Directory Listing
Modified Fri Sep 4 00:13:00 2009 UTC (9 years, 5 months ago) by jfenwick

Unit tests and user doco for interpolation and saveCSV

Revision 2645 - Directory Listing
Modified Thu Sep 3 02:20:33 2009 UTC (9 years, 5 months ago) by ahallam

More revisions to cookbook, fixed cblib.py for Scons, new figures.

Revision 2636 - Directory Listing
Modified Thu Aug 27 05:26:42 2009 UTC (9 years, 5 months ago) by jfenwick

Disabling cookbook example checks until we can fix them.

Revision 2634 - Directory Listing
Modified Thu Aug 27 04:03:32 2009 UTC (9 years, 5 months ago) by ahallam

Updates to cookbook. Updates to scripts. Updates to figures. Working examples added to SCons. Data folder structure included minus data. More folder rejigging.

Revision 2633 - Directory Listing
Modified Wed Aug 26 22:21:52 2009 UTC (9 years, 5 months ago) by ahallam

Sorry second regigging

Revision 2632 - Directory Listing
Modified Wed Aug 26 22:18:19 2009 UTC (9 years, 5 months ago) by ahallam

Regigger of cookbook directory structure. Examlples->examples/cookbook TEXT->doc/cookbook Figures-> doc/cookbook/figures

Revision 2625 - Directory Listing
Modified Fri Aug 21 06:30:25 2009 UTC (9 years, 6 months ago) by jfenwick

Merging changes from new doco branch.
All docstrings are now in reStructured text.
A few email addresses have been fixes as well.

Revision 2620 - Directory Listing
Modified Thu Aug 20 06:24:00 2009 UTC (9 years, 6 months ago) by gross

some small additions to pycad to make life a bit easier.

Revision 2606 - Directory Listing
Modified Thu Aug 13 04:32:23 2009 UTC (9 years, 6 months ago) by ahallam

Updates to first chapter in cookbook -> approaching completion.
New figures added for model descriptions.
Scripts updated to use pylab/matplotlib and movie making scripts added for *.avi creation.
Still to finalise in chapter 1
- twodheatdiff model of intrusion
	-contouring

- heat refraction scripts and begin cookbook sections
	- pycad discussion
	- steady state pde discussion
	- quiver plot discussion

Revision 2605 - Directory Listing
Modified Wed Aug 12 22:30:47 2009 UTC (9 years, 6 months ago) by gross

some changes to the cook book

Revision 2602 - Directory Listing
Modified Tue Aug 11 00:38:42 2009 UTC (9 years, 6 months ago) by jfenwick

Merging changes made for release3.0 back to trunk.

Revision 2600 - Directory Listing
Modified Fri Aug 7 04:47:49 2009 UTC (9 years, 6 months ago) by jfenwick

Using the 'agg' backend in matplotlib to avoid reference to the X Display.

Revision 2597 - Directory Listing
Modified Thu Aug 6 03:30:09 2009 UTC (9 years, 6 months ago) by ahallam

Updates to: cookbook documentation; heat refraction problems; mencoder investigation for *.png animation

Revision 2596 - Directory Listing
Modified Thu Aug 6 03:09:03 2009 UTC (9 years, 6 months ago) by lgao

Add new diagnostic information: "net time" (the execution time of solver, excluding the setup time for solver and the execution time of preconditioner)

Revision 2589 - Directory Listing
Modified Wed Aug 5 23:06:35 2009 UTC (9 years, 6 months ago) by ahallam

Revision 2588 - Directory Listing
Modified Wed Aug 5 22:42:36 2009 UTC (9 years, 6 months ago) by ahallam

Heat diffraction initial committal 2 weeks work.

Revision 2583 - Directory Listing
Modified Wed Aug 5 01:49:56 2009 UTC (9 years, 6 months ago) by jfenwick

Minor fixes

Revision 2581 - Directory Listing
Modified Wed Aug 5 01:11:33 2009 UTC (9 years, 6 months ago) by jfenwick

Fixed unit test for missing matplotlib case.

Revision 2580 - Directory Listing
Modified Tue Aug 4 08:24:12 2009 UTC (9 years, 6 months ago) by gross

another example for the usage of matplot lib added to users guide.

Revision 2578 - Directory Listing
Modified Tue Aug 4 04:05:36 2009 UTC (9 years, 6 months ago) by jfenwick

Fixed problem with unit tests

Revision 2575 - Directory Listing
Modified Mon Aug 3 23:38:33 2009 UTC (9 years, 6 months ago) by jfenwick

Fixed some grammar note about Lenny not working.

Revision 2574 - Directory Listing
Modified Mon Aug 3 09:09:20 2009 UTC (9 years, 6 months ago) by gross

matplotlib description added to usersguide

Revision 2573 - Directory Listing
Modified Mon Aug 3 04:30:09 2009 UTC (9 years, 6 months ago) by gross

some more fixes on solver options.

Revision 2568 - Directory Listing
Modified Fri Jul 31 05:37:41 2009 UTC (9 years, 6 months ago) by jfenwick

Updated install guide to include the correct version of python.
Updated Mac build instructions not to use numarray or frameworks.
Removed (commented out) references to MacPorts in the Mac instructions.
- These need to be updated and Artak isn't here.

Removed (commented out) references to windows in the install guide.
CSIRO won't have a windows release ready yet.

Revision 2563 - Directory Listing
Modified Tue Jul 28 03:50:45 2009 UTC (9 years, 6 months ago) by gross

reengineered version of the mountain class so it becomes easier to use for the convection code

Revision 2559 - Directory Listing
Modified Mon Jul 27 05:19:21 2009 UTC (9 years, 6 months ago) by artak

typo: MaxIter changed IterMax

Revision 2558 - Directory Listing
Modified Mon Jul 27 05:03:32 2009 UTC (9 years, 6 months ago) by gross

a table added showing the available solver options for finley paso.

Revision 2553 - Directory Listing
Modified Fri Jul 24 01:30:14 2009 UTC (9 years, 7 months ago) by jfenwick

Added another citation.

Revision 2549 - Directory Listing
Modified Mon Jul 20 06:43:47 2009 UTC (9 years, 7 months ago) by jfenwick

Remainder of copyright date fixes

Revision 2548 - Directory Listing
Modified Mon Jul 20 06:20:06 2009 UTC (9 years, 7 months ago) by jfenwick

Updating copyright notices

Revision 2547 - Directory Listing
Modified Mon Jul 20 05:50:46 2009 UTC (9 years, 7 months ago) by caltinay

More work on the install guide.

Revision 2545 - Directory Listing
Modified Mon Jul 20 04:54:57 2009 UTC (9 years, 7 months ago) by caltinay

Install guide: fixed a minor typo

Revision 2544 - Directory Listing
Modified Mon Jul 20 04:50:38 2009 UTC (9 years, 7 months ago) by caltinay

Enable building doxygen docs for the escriptreader library.

Revision 2543 - Directory Listing
Modified Mon Jul 20 04:38:21 2009 UTC (9 years, 7 months ago) by caltinay

Install guide: fixed latex compilation due to incompatible hyperref package.

Revision 2540 - Directory Listing
Modified Mon Jul 20 00:09:55 2009 UTC (9 years, 7 months ago) by jfenwick

Deprecating pyvisi in the user guide.

Revision 2538 - Directory Listing
Modified Fri Jul 17 06:24:15 2009 UTC (9 years, 7 months ago) by caltinay

Install guide: Reworked introduction and enabled hyperref package

Revision 2537 - Directory Listing
Modified Fri Jul 17 05:50:35 2009 UTC (9 years, 7 months ago) by jfenwick

Operation_make_pyvisi_go_away: Stage 1 of PI

Removing pyvisi example files.

Revision 2536 - Directory Listing
Modified Thu Jul 16 23:53:07 2009 UTC (9 years, 7 months ago) by caltinay

installguide: Fixed typos, minor semantics, repetitions and whitespace issues.

Revision 2534 - Directory Listing
Modified Thu Jul 16 06:49:19 2009 UTC (9 years, 7 months ago) by caltinay

Changed examples, tests and tutorials to save VTK files as .vtu instead .xml.
Visit doesn't know what to do with xml's and vtu is the proper extension
anyway.

Revision 2531 - Directory Listing
Modified Thu Jul 9 23:56:57 2009 UTC (9 years, 7 months ago) by jfenwick

Setting always build on the api_epydoc target as a quick work around

Revision 2529 - Directory Listing
Modified Thu Jul 9 06:06:35 2009 UTC (9 years, 7 months ago) by jfenwick

Some changes to the install guide.
More work to do.

Revision 2524 - Directory Listing
Modified Wed Jul 8 00:39:26 2009 UTC (9 years, 7 months ago) by artak

Minimum size of the coarsest level matrix option added to solver options

Revision 2521 - Directory Listing
Modified Tue Jul 7 00:08:58 2009 UTC (9 years, 7 months ago) by jfenwick

Modified Lazy so that resolving a single sample uses the node cache method.
Fixed some doxygen problems.

Revision 2515 - Directory Listing
Modified Fri Jul 3 00:59:05 2009 UTC (9 years, 7 months ago) by gross

missing files for documentation

Revision 2513 - Directory Listing
Modified Thu Jul 2 08:42:11 2009 UTC (9 years, 7 months ago) by gross

some fixes in wave.py example

Revision 2512 - Directory Listing
Modified Thu Jul 2 05:34:14 2009 UTC (9 years, 7 months ago) by jfenwick

Made the warnings against linking gomp a bit more detailed.
Commented out gomp from the linux sample.

Revision 2508 - Directory Listing
Modified Thu Jul 2 04:33:25 2009 UTC (9 years, 7 months ago) by jfenwick

Ensured that example files are copied with build_py_tests rather than py_tests.
This means that:
build_full
will set up all the files ready for utest.sh

Revision 2503 - Directory Listing
Modified Wed Jul 1 05:05:08 2009 UTC (9 years, 7 months ago) by jfenwick

Fixing doc build so examples tar and zip are built properly.
Fixed image filenames in user guide.

Please do not put extensions on image files.

Revision 2502 - Directory Listing
Modified Tue Jun 30 05:49:22 2009 UTC (9 years, 7 months ago) by gross

tests for examples added. utest is not working yet.

Revision 2495 - Directory Listing
Modified Fri Jun 26 03:39:21 2009 UTC (9 years, 7 months ago) by ahallam

Many revisions to Head Diff Documentation, One grammar correction to user guide.

Revision 2494 - Directory Listing
Modified Thu Jun 25 05:00:57 2009 UTC (9 years, 7 months ago) by ahallam

Many updates to onedheatdiff in example and documentation. Still in need of some TLC however.

Revision 2486 - Directory Listing
Modified Tue Jun 23 03:38:54 2009 UTC (9 years, 8 months ago) by gross

a bit more info are printed for the DarcyFlux now.

Revision 2484 - Directory Listing
Modified Mon Jun 22 04:22:19 2009 UTC (9 years, 8 months ago) by gross

numarray removed from docu; Locator revised.

Revision 2477 - Directory Listing
Modified Wed Jun 17 06:22:15 2009 UTC (9 years, 8 months ago) by gross

modification to the cookbook

Revision 2474 - Directory Listing
Modified Tue Jun 16 06:32:15 2009 UTC (9 years, 8 months ago) by gross

linearPDEs has is now using the SolverOptions class to talk to PASO

Revision 2470 - Directory Listing
Modified Thu Jun 11 08:32:32 2009 UTC (9 years, 8 months ago) by gross

SolverOption class added. It is not linked with anything.

Revision 2469 - Directory Listing
Modified Thu Jun 11 04:52:14 2009 UTC (9 years, 8 months ago) by ahallam

Week 11: Close to finishing wave equation, looking at adding friction to wave equation.

Revision 2467 - Directory Listing
Modified Tue Jun 9 23:12:04 2009 UTC (9 years, 8 months ago) by jfenwick

Fixed a missing file.

Revision 2466 - Directory Listing
Modified Tue Jun 9 05:02:56 2009 UTC (9 years, 8 months ago) by jfenwick

Fixed build from source instructions for linux to include offscreen rendering by default!

Revision 2463 - Directory Listing
Modified Tue Jun 9 03:51:23 2009 UTC (9 years, 8 months ago) by jfenwick

Added an svn-ignore, added changes and references section to user guide.

Revision 2462 - Directory Listing
Modified Fri Jun 5 06:04:01 2009 UTC (9 years, 8 months ago) by jfenwick

Modified wrapper script to correctly point at numpy in standalone builds.
Updated build from source doco for linux to take numpy into account.
Also removed backticks in favour of $()  - it should be the same but latex won't eat them

Revision 2460 - Directory Listing
Modified Fri Jun 5 05:04:45 2009 UTC (9 years, 8 months ago) by ahallam

Week 10:
Continued work on wave equation and tutorial write up.

Revision 2455 - Directory Listing
Modified Wed Jun 3 03:29:07 2009 UTC (9 years, 8 months ago) by jfenwick

Merging changes from numpy branch.

Revision 2448 - Directory Listing
Modified Fri May 29 04:47:48 2009 UTC (9 years, 8 months ago) by ahallam

Week 9: implemented cosine taper for wave function, need to work on direct method without lumping, wave propagation velocity is still not correct

Revision 2446 - Directory Listing
Modified Fri May 29 04:24:01 2009 UTC (9 years, 8 months ago) by gross

same adjustment of nameing

Revision 2444 - Directory Listing
Modified Fri May 29 01:51:28 2009 UTC (9 years, 8 months ago) by ahallam

Revision 2443 - Directory Listing
Modified Fri May 29 01:44:22 2009 UTC (9 years, 8 months ago) by ahallam

Fixing some things

Revision 2438 - Directory Listing
Modified Tue May 26 02:26:52 2009 UTC (9 years, 8 months ago) by gross

new version of power law (blame Hans)

Revision 2434 - Directory Listing
Modified Thu May 21 07:59:53 2009 UTC (9 years, 9 months ago) by ahallam

Week 8: Still working on seismic wave propagation. Need to come up with a smooth source function next week. All TEXT files up to date.

Revision 2433 - Directory Listing
Modified Wed May 20 08:43:43 2009 UTC (9 years, 9 months ago) by gross

some documentation on power law added

Revision 2432 - Directory Listing
Modified Wed May 20 06:06:20 2009 UTC (9 years, 9 months ago) by gross

power law and incompressible flow is running now

Revision 2429 - Directory Listing
Modified Tue May 19 10:04:54 2009 UTC (9 years, 9 months ago) by gross

pycad allows noe to set the number of elements per line and the generation of quadrilateral elements over serfaces.

Revision 2427 - Directory Listing
Modified Fri May 15 04:29:01 2009 UTC (9 years, 9 months ago) by ahallam

Week 7: Work done on wave problem.

Revision 2426 - Directory Listing
Modified Fri May 15 04:28:31 2009 UTC (9 years, 9 months ago) by ahallam

Week 7: Work done on wave problem.

Revision 2420 - Directory Listing
Modified Thu May 14 02:28:58 2009 UTC (9 years, 9 months ago) by gross

vtk writer supports now meta data and meta data schema

Revision 2417 - Directory Listing
Modified Wed May 13 08:18:47 2009 UTC (9 years, 9 months ago) by gross

some remarks on load and dump added to the users guide.

Revision 2415 - Directory Listing
Modified Wed May 13 02:48:39 2009 UTC (9 years, 9 months ago) by gross

FileWriter added: this class takes care of writing data which are global in MPI to a file. It is recommended to use this class rather then the build in open as it takes care of the case of many processors.

Revision 2412 - Directory Listing
Modified Fri May 8 04:27:17 2009 UTC (9 years, 9 months ago) by jfenwick

Clean up cookbook-
Cleaned up the svn:ignore
removed some latex intermediate files

Revision 2411 - Directory Listing
Modified Fri May 8 03:13:15 2009 UTC (9 years, 9 months ago) by ahallam

Week 6 I think?? Started work on 2d wave solution, want to change from verlet according to lutz. Have semi finished heat diffusion but is ready for review and further modification in the future. Added new sections to first chapter, may or may not be needed but added as a reminder anyway.

Revision 2409 - Directory Listing
Modified Tue May 5 06:22:11 2009 UTC (9 years, 9 months ago) by jfenwick

bin/escript is now under version control.
The wrapper template is no longer used.
Extraneous output doc removed from scons during build.

note: finleypython is no longer built (it was deprecated anyway).

Revision 2405 - Directory Listing
Modified Wed Apr 29 23:57:38 2009 UTC (9 years, 9 months ago) by jfenwick

Another attempt at building the doco.
--transform is not supported by savanna's tar

Revision 2404 - Directory Listing
Modified Wed Apr 29 06:53:36 2009 UTC (9 years, 9 months ago) by gross

documentation for units added.

Revision 2402 - Directory Listing
Modified Wed Apr 29 06:02:21 2009 UTC (9 years, 9 months ago) by jfenwick

Fixing the build of example tar and zip files so they don't have full 
paths.

Revision 2401 - Directory Listing
Modified Wed Apr 29 04:23:07 2009 UTC (9 years, 9 months ago) by ahallam

End Week 5:
Renamed *.tex files to more logical, changed to chapter format as HEAT_DIFFUSION.tex
Editted and Reviewed text portion and some python scripts for heat diffusion.
Looking to push for finalisation on heat diffusion in the next couple of week to begin next modelling problem/Chapter.

Revision 2397 - Directory Listing
Modified Fri Apr 24 04:24:28 2009 UTC (9 years, 10 months ago) by ahallam

End Week 4, Finalised 1D examples, need work on text but script ok.
Begining of 2D example builds on 1D. Script semi-finalised, text to complete.

Revision 2393 - Directory Listing
Modified Thu Apr 16 04:24:07 2009 UTC (9 years, 10 months ago) by ahallam

End Day Commit
Working on onedheatdiff_var001

Revision 2392 - Directory Listing
Modified Thu Apr 16 01:53:23 2009 UTC (9 years, 10 months ago) by ahallam

Initial Commital of CookBook to SVN
Has 2.5 Weeks work and semi completed first heat diffusion tutorial

Revision 2391 - Directory Listing
Modified Thu Apr 16 01:08:57 2009 UTC (9 years, 10 months ago) by jfenwick

Minor tweak to title page.
Better handling of alternative names in SConstruct.

Revision 2390 - Directory Listing
Modified Wed Apr 15 06:46:42 2009 UTC (9 years, 10 months ago) by gross

some minor fixes.

Revision 2389 - Directory Listing
Modified Wed Apr 15 06:46:01 2009 UTC (9 years, 10 months ago) by gross

some minor fixes.

Revision 2387 - Directory Listing
Modified Wed Apr 15 05:05:27 2009 UTC (9 years, 10 months ago) by jfenwick

Changed the figure eps->pdf to use a builder to make hypothetical windows doc building easier.

Revision 2375 - Directory Listing
Modified Tue Apr 7 04:41:28 2009 UTC (9 years, 10 months ago) by gross

MPI hints added

Revision 2373 - Directory Listing
Modified Mon Apr 6 23:49:31 2009 UTC (9 years, 10 months ago) by jfenwick

Minor spelling and man page tweaks.

Revision 2372 - Directory Listing
Modified Mon Apr 6 23:36:15 2009 UTC (9 years, 10 months ago) by gross

changes to the urls

Revision 2371 - Directory Listing
Modified Mon Apr 6 11:48:32 2009 UTC (9 years, 10 months ago) by gross

missing  citations and references added

Revision 2370 - Directory Listing
Modified Mon Apr 6 06:41:49 2009 UTC (9 years, 10 months ago) by gross

some modifications to docu for MPI

Revision 2363 - Directory Listing
Modified Fri Apr 3 03:56:19 2009 UTC (9 years, 10 months ago) by gross

scons should now be able to run tests under MPI and OpenMP

Revision 2361 - Directory Listing
Modified Fri Apr 3 00:37:25 2009 UTC (9 years, 10 months ago) by jfenwick

Hopefully fixing the bad figures.
It turns out latex2html can not handle the optional angle= param in 
\includegraphics

Revision 2359 - Directory Listing
Modified Thu Apr 2 03:50:33 2009 UTC (9 years, 10 months ago) by jfenwick

Moved man page for easier testing.
Modified the wrapper script to take into account debian packaging.
This setting is recorded in the escript wrapper automatically by the package building script.

Revision 2356 - Directory Listing
Modified Wed Apr 1 04:46:22 2009 UTC (9 years, 10 months ago) by gross

more on escript command.

Revision 2355 - Directory Listing
Modified Wed Apr 1 04:08:28 2009 UTC (9 years, 10 months ago) by gross

intel MPI added.

Revision 2352 - Directory Listing
Modified Wed Apr 1 01:15:15 2009 UTC (9 years, 10 months ago) by jfenwick

Updated doco to reflect changed env variables

Revision 2350 - Directory Listing
Modified Tue Mar 31 08:26:05 2009 UTC (9 years, 10 months ago) by gross

more escript wrapper stuff

Revision 2347 - Directory Listing
Modified Mon Mar 30 06:07:47 2009 UTC (9 years, 10 months ago) by jfenwick

Added windows notes to install guide.

Revision 2346 - Directory Listing
Modified Mon Mar 30 05:05:44 2009 UTC (9 years, 10 months ago) by jfenwick

Added instructions to test installations.

Revision 2345 - Directory Listing
Modified Mon Mar 30 04:44:06 2009 UTC (9 years, 10 months ago) by jfenwick

Added proper man page (with formatting and everything).
Updated package description.

Revision 2344 - Directory Listing
Modified Mon Mar 30 02:13:58 2009 UTC (9 years, 10 months ago) by jfenwick

Change __url__ to launchpad site

Revision 2343 - Directory Listing
Modified Mon Mar 30 01:34:45 2009 UTC (9 years, 10 months ago) by jfenwick

Added -b option to wrapper script. For the running of non-python 
binaries.

Revision 2342 - Directory Listing
Modified Sun Mar 29 23:28:55 2009 UTC (9 years, 10 months ago) by jfenwick

No comment.

Revision 2341 - Directory Listing
Modified Fri Mar 27 05:40:56 2009 UTC (9 years, 10 months ago) by jfenwick

Revision 2340 - Directory Listing
Modified Fri Mar 27 05:32:05 2009 UTC (9 years, 10 months ago) by jfenwick

And again

Revision 2339 - Directory Listing
Modified Fri Mar 27 05:14:55 2009 UTC (9 years, 10 months ago) by jfenwick

Fixing a bug preventing docs from building

Revision 2338 - Directory Listing
Modified Fri Mar 27 05:01:49 2009 UTC (9 years, 10 months ago) by jfenwick

Added vars for mpi_flavour
Output correct version into the user guide

Revision 2337 - Directory Listing
Modified Thu Mar 26 07:07:42 2009 UTC (9 years, 10 months ago) by gross

Transport class uses now useBackwardEuler rather than the mysterious theta.

Revision 2336 - Directory Listing
Modified Thu Mar 26 06:09:20 2009 UTC (9 years, 10 months ago) by jfenwick

Fixed title for pdf builds.
All the peices build now. (There are still issues with Figure 1.7 in the html version).

Revision 2335 - Directory Listing
Modified Thu Mar 26 04:33:44 2009 UTC (9 years, 10 months ago) by jfenwick

The user guide now builds under pdflatex (if you have converted the figures). Unfortunately, it has a really ugly title.

Revision 2334 - Directory Listing
Modified Thu Mar 26 03:05:33 2009 UTC (9 years, 10 months ago) by jfenwick

Getting install guide to build.

Revision 2333 - Directory Listing
Modified Wed Mar 25 02:15:11 2009 UTC (9 years, 10 months ago) by jfenwick

Minor format tweaks.
All relevant info from the twiki install page now copied.
(Except INSTALL.SGI_ICE)

Revision 2332 - Directory Listing
Modified Tue Mar 24 01:13:08 2009 UTC (9 years, 11 months ago) by jfenwick

Added new options to the escript wrapper.
This populates all the variables described in the documentation but does 
not necessarily do anything with them.

Fixed minor typo in doco.

Revision 2331 - Directory Listing
Modified Mon Mar 23 01:18:21 2009 UTC (9 years, 11 months ago) by jfenwick

Updated the escript execution section.
Added a few references.

Revision 2329 - Directory Listing
Modified Mon Mar 23 00:42:57 2009 UTC (9 years, 11 months ago) by artak

minor

Revision 2328 - Directory Listing
Modified Fri Mar 20 03:40:56 2009 UTC (9 years, 11 months ago) by artak

Added a section on installing using Macports. in srclinux.tex $ replaced by $

Revision 2327 - Directory Listing
Modified Thu Mar 19 06:01:26 2009 UTC (9 years, 11 months ago) by artak

Mac OS X development tools instructions are added.

Revision 2326 - Directory Listing
Modified Thu Mar 19 05:34:00 2009 UTC (9 years, 11 months ago) by artak

Instructions on how to install on Mac from source.

Revision 2324 - Directory Listing
Modified Thu Mar 19 04:35:30 2009 UTC (9 years, 11 months ago) by jfenwick

Fixed some non-portable paths in SConstruct.
Added section links for compiling only escript.

Revision 2321 - Directory Listing
Modified Thu Mar 19 04:08:59 2009 UTC (9 years, 11 months ago) by artak

Mac instructions for binary bundle.

Revision 2318 - Directory Listing
Modified Thu Mar 19 03:18:11 2009 UTC (9 years, 11 months ago) by gross

more on MPI in the users guide.

Revision 2317 - Directory Listing
Modified Thu Mar 19 01:48:00 2009 UTC (9 years, 11 months ago) by jfenwick

Adding Content.

Revision 2316 - Directory Listing
Modified Thu Mar 19 01:22:15 2009 UTC (9 years, 11 months ago) by gross

some documentation on the escript wrapper added.

Revision 2313 - Directory Listing
Modified Tue Mar 17 03:41:17 2009 UTC (9 years, 11 months ago) by gross

pyvisi is now rejecting to work under MPI with more than 1 processor. Tests for this configuration are dropped now.

Revision 2306 - Directory Listing
Modified Mon Mar 16 00:23:57 2009 UTC (9 years, 11 months ago) by artak

verbose added

Revision 2304 - Directory Listing
Modified Fri Mar 13 03:17:24 2009 UTC (9 years, 11 months ago) by gross

a more robust way of doing whereZero and whereNotZero.

Revision 2300 - Directory Listing
Modified Wed Mar 11 08:17:57 2009 UTC (9 years, 11 months ago) by gross

a power law model. tests still need to be added and needs to be linked with an incompressible solver.

Revision 2294 - Directory Listing
Modified Mon Mar 2 03:44:27 2009 UTC (9 years, 11 months ago) by jfenwick

Added instructions on how to install debian package to the install guide.
Wrapper script generation now produces two scripts (escript and finleypython).
The two are identical - eventually we will remove finleypython.

Modified the wrapper script so it will print a message and start the python interpreter if you don't specify a script.

Revision 2291 - Directory Listing
Modified Fri Feb 27 01:53:06 2009 UTC (9 years, 11 months ago) by jfenwick

Added scripts and such for building debian packages against Debian/Lenny.
Some things like the man page and the package description need some work but the packages produced appear to work.

If people are going to produce .debs please read read the packaging/lenny/README_developers_this_means_you

file.

Revision 2290 - Directory Listing
Modified Thu Feb 26 06:38:16 2009 UTC (9 years, 11 months ago) by jfenwick

Some minor changes to doco before I mess about with packaging.

Revision 2289 - Directory Listing
Modified Wed Feb 25 03:38:59 2009 UTC (9 years, 11 months ago) by jfenwick

Main compilation page copied from twiki.

Revision 2287 - Directory Listing
Modified Tue Feb 24 04:29:17 2009 UTC (9 years, 11 months ago) by jfenwick

Added skeleton of install guide.
Removed some files which come in the standard texlive distro anyway.
Updated README_LICENSE to list python tex styles.

Revision 2283 - Directory Listing
Modified Fri Feb 20 01:08:21 2009 UTC (10 years ago) by jfenwick

doxygen doco now correctly reports global project revsion number.
link to epydoc is now via a relative URL (avoids the problem of nightly doxygen pointing at out of date release epydoc).

Revision 2264 - Directory Listing
Modified Wed Feb 11 06:48:28 2009 UTC (10 years ago) by gross

a new darcy flux solver.

Revision 2252 - Directory Listing
Modified Fri Feb 6 07:51:28 2009 UTC (10 years ago) by gross

some notes for the kelvin model added. Implementation is still missing

Revision 2251 - Directory Listing
Modified Fri Feb 6 06:50:39 2009 UTC (10 years ago) by gross

new compressible flow solver

Revision 2211 - Directory Listing
Modified Tue Jan 13 03:52:13 2009 UTC (10 years, 1 month ago) by artak

Example of a usage of Mountains class.

Revision 2208 - Directory Listing
Modified Mon Jan 12 06:37:07 2009 UTC (10 years, 1 month ago) by gross

more work on the dary solver

Revision 2193 - Directory Listing
Modified Mon Jan 5 04:29:06 2009 UTC (10 years, 1 month ago) by lgraham

Edited Stokes flow and Level Set tutorials (grammar etc.)

Revision 2192 - Directory Listing
Modified Mon Jan 5 02:41:34 2009 UTC (10 years, 1 month ago) by lgraham

Edited Stokes flow tutorial

Revision 2191 - Directory Listing
Modified Mon Jan 5 00:30:15 2009 UTC (10 years, 1 month ago) by lgraham

Included a tutorial on fluid flow, using the StokesProblemCartesian class

Revision 2182 - Directory Listing
Modified Thu Dec 18 03:30:17 2008 UTC (10 years, 2 months ago) by caltinay

Fixed some more typos

Revision 2181 - Directory Listing
Modified Thu Dec 18 00:58:48 2008 UTC (10 years, 2 months ago) by caltinay

Fixed two typos in bibliography

Revision 2156 - Directory Listing
Modified Mon Dec 15 05:09:02 2008 UTC (10 years, 2 months ago) by gross

some modifications to the iterative solver to make them easier to use. 
There are also improved versions of the Darcy flux solver and the incompressible solver.

Revision 2148 - Directory Listing
Modified Wed Dec 10 04:57:35 2008 UTC (10 years, 2 months ago) by lgraham

Updated the LevelSet class section in the Models chapter. The section is contained in a .tex file at the moment to avoid conflict.

Revision 2138 - Directory Listing
Modified Mon Dec 8 02:27:07 2008 UTC (10 years, 2 months ago) by lgraham

starting a section for the Level Set class in the Models chapter.

Revision 2129 - Directory Listing
Modified Thu Dec 4 03:53:02 2008 UTC (10 years, 2 months ago) by lgraham

Added RT2D.py python script for levelset tutorial to examples directory.

Revision 2128 - Directory Listing
Modified Thu Dec 4 03:48:22 2008 UTC (10 years, 2 months ago) by lgraham

Added description of Rayleigh-Taylor instability python script, and a note on visualising the output with visit.

Revision 2127 - Directory Listing
Modified Thu Dec 4 03:42:45 2008 UTC (10 years, 2 months ago) by lgraham

added figures of simulation output for Rayleigh-Taylor instability; produced by visIt

Revision 2121 - Directory Listing
Modified Wed Dec 3 00:25:08 2008 UTC (10 years, 2 months ago) by jfenwick

Removing pdf from repository.

Revision 2120 - Directory Listing
Modified Tue Dec 2 06:21:49 2008 UTC (10 years, 2 months ago) by lgraham

Added Rayleigh-Taylor instability code into users guide

Revision 2115 - Directory Listing
Modified Tue Dec 2 01:21:07 2008 UTC (10 years, 2 months ago) by lgraham

Added in theory of the reinitialisation procedure for the level set method.

Revision 2108 - Directory Listing
Modified Fri Nov 28 05:09:23 2008 UTC (10 years, 2 months ago) by gross

some minor changes to PCG and some extra suspicious characters.

Revision 2104 - Directory Listing
Modified Thu Nov 27 05:36:47 2008 UTC (10 years, 2 months ago) by jfenwick

Fixed non-compilage.
Removed mysterious t and t! from output.

Revision 2100 - Directory Listing
Modified Wed Nov 26 08:13:00 2008 UTC (10 years, 2 months ago) by gross

This commit cleans up the incompressible solver and adds a DarcyFlux solver in model module. 
Some documentation for both classes has been added.
The convection code is only linear at the moment.

Revision 2091 - Directory Listing
Modified Tue Nov 25 03:26:51 2008 UTC (10 years, 2 months ago) by ksteube

Updates for running epydoc and creating examples_zipfile

Revision 2065 - Directory Listing
Modified Thu Nov 20 04:25:47 2008 UTC (10 years, 3 months ago) by jfenwick

Have the epydoc put its output in the correct place before anyone 
notices.

Revision 2063 - Directory Listing
Modified Wed Nov 19 04:59:43 2008 UTC (10 years, 3 months ago) by jfenwick

- Removed some deprecated directories.
- Removed the pythfilter script for converting python doco into c++ stubs. The license was unspecified and we don't use it.
- Suppressed long long warnings on gcc (the Mac complained).
- svn:ignored Mac library suffixes in lib directory

Revision 2062 - Directory Listing
Modified Wed Nov 19 04:32:13 2008 UTC (10 years, 3 months ago) by jfenwick

Fixed api_epydoc so that it actually rebuilds the doco when required.

Revision 2061 - Directory Listing
Modified Wed Nov 19 03:40:21 2008 UTC (10 years, 3 months ago) by jfenwick

Fixing some warnings from epydoc.
Disabled c++ signatures in python docstrings.
Removed references to Bruce in epydoc and the users guide.

Revision 2035 - Directory Listing
Modified Thu Nov 13 03:16:09 2008 UTC (10 years, 3 months ago) by jfenwick

Putting poisson.py back

Revision 2034 - Directory Listing
Modified Thu Nov 13 03:03:42 2008 UTC (10 years, 3 months ago) by artak

variable <set> is initilized to get rid of compiler warnning errors. finley/src/Quadrature.c

Revision 2006 - Directory Listing
Modified Mon Nov 10 03:07:08 2008 UTC (10 years, 3 months ago) by jfenwick

Updating svn:ignore properties.

Revision 2005 - Directory Listing
Modified Mon Nov 10 01:21:39 2008 UTC (10 years, 3 months ago) by jfenwick

Bringing all changes across from schroedinger.
(Note this does not mean development is done, just that it will happen
on the trunk for now).
If anyone notices any problems please contact me.

Revision 1978 - Directory Listing
Modified Thu Nov 6 04:21:23 2008 UTC (10 years, 3 months ago) by artak

MINRES, TFQMR, GS are added

Revision 1973 - Directory Listing
Modified Thu Nov 6 02:31:37 2008 UTC (10 years, 3 months ago) by lgraham

Tidied up the white space between the equations and fixed gramma in the Rayleigh-Taylor Instability (levelset) tutorial.
Will include Escript code soon.

Revision 1971 - Directory Listing
Modified Thu Nov 6 01:11:23 2008 UTC (10 years, 3 months ago) by artak

Some typos fixed. The rearagments of figure 1, and footnotes added to avoid confusion.

Revision 1966 - Directory Listing
Modified Wed Nov 5 04:59:22 2008 UTC (10 years, 3 months ago) by jfenwick

Some more fixes to user guide.

Revision 1964 - Directory Listing
Modified Wed Nov 5 03:21:31 2008 UTC (10 years, 3 months ago) by caltinay

user's guide: Reviewed and updated pyvisi documentation.

Revision 1963 - Directory Listing
Modified Wed Nov 5 03:20:24 2008 UTC (10 years, 3 months ago) by caltinay

user's guide: Fixed some typos.

Revision 1959 - Directory Listing
Modified Tue Nov 4 01:49:19 2008 UTC (10 years, 3 months ago) by jfenwick

More fixes to doco.

Revision 1958 - Directory Listing
Modified Mon Nov 3 23:47:16 2008 UTC (10 years, 3 months ago) by jfenwick

Fixed URL to python doc in guide_defs

Revision 1957 - Directory Listing
Modified Mon Nov 3 06:14:18 2008 UTC (10 years, 3 months ago) by jfenwick

Some fixes to user guide

Revision 1955 - Directory Listing
Modified Fri Oct 31 04:01:24 2008 UTC (10 years, 3 months ago) by jfenwick

Fixed some macros so they don't add extra spaces.
Switched from input to include for chapters for faster recompile.

Revision 1941 - Directory Listing
Modified Tue Oct 28 07:51:49 2008 UTC (10 years, 3 months ago) by ksteube

Updated installation directions in the User Guide to simply
point to the instructions on the wiki, which I have already
updated extensively.

Revision 1892 - Directory Listing
Modified Fri Oct 17 00:55:59 2008 UTC (10 years, 4 months ago) by artak

memory leak is fixed

Revision 1878 - Directory Listing
Modified Tue Oct 14 03:39:13 2008 UTC (10 years, 4 months ago) by gross

new version of JacobiFree Newton GMRES + test added.

Revision 1863 - Directory Listing
Modified Wed Oct 8 23:54:00 2008 UTC (10 years, 4 months ago) by ksteube

Improved test for off-screen rendering with pyvisi

Revision 1859 - Directory Listing
Modified Wed Oct 8 03:03:37 2008 UTC (10 years, 4 months ago) by gross

first version of testing for transport solver.

Revision 1841 - Directory Listing
Modified Fri Oct 3 03:57:52 2008 UTC (10 years, 4 months ago) by gross

modification on LinearPDE class and a first version of Transport class

Revision 1830 - Directory Listing
Modified Thu Oct 2 06:51:48 2008 UTC (10 years, 4 months ago) by ksteube

Tests using JoinFaces() and domain.write() will not work under MPI and must be disabled for num procs > 1

Revision 1811 - Directory Listing
Modified Thu Sep 25 23:11:13 2008 UTC (10 years, 4 months ago) by ksteube

Copyright updated in all files

Revision 1805 - Directory Listing
Modified Wed Sep 24 23:39:00 2008 UTC (10 years, 4 months ago) by ksteube

Added python-level methods getMPISizeWorld() and getMPIRankWorld() for MPI process info.
Test suite run_inputOutput.py runs on any number of cores now, hybrid may still be a problem.

Revision 1796 - Directory Listing
Modified Wed Sep 17 01:45:46 2008 UTC (10 years, 5 months ago) by jfenwick

Merged noarrayview branch onto trunk.

Revision 1746 - Directory Listing
Modified Wed Sep 3 01:24:16 2008 UTC (10 years, 5 months ago) by lgraham

Corrected plus (+) sign in Equation (2.54) for elastic tensor, and (2.60) for von Mises stress.

Revision 1709 - Directory Listing
Modified Fri Aug 15 01:09:45 2008 UTC (10 years, 6 months ago) by lgraham

added separate section for Einstein notation

Revision 1705 - Directory Listing
Modified Thu Aug 14 05:56:40 2008 UTC (10 years, 6 months ago) by ksteube

Branch scons-dev is hereby closed.
Some parts of scons scripts have been re-written.

Revision 1702 - Directory Listing
Modified Thu Aug 14 04:10:23 2008 UTC (10 years, 6 months ago) by lgraham

added in latex file for models chapter

Revision 1701 - Directory Listing
Modified Thu Aug 14 04:05:15 2008 UTC (10 years, 6 months ago) by lgraham

comments for rev 1700.
Ran through spell checker for tutorial chapters.
Added in a tutorial chapter introducing the level set method with the Rayleigh-Taylor instability problem. Need to add python code at a later date for level set class.
Started to write up a chapter on model classes, e.g. StokesProblemCartesian, LevelSet, DurckerPrager, and TemperatureCartesian etc.

Revision 1700 - Directory Listing
Modified Thu Aug 14 03:35:46 2008 UTC (10 years, 6 months ago) by lgraham

Revision 1569 - Directory Listing
Modified Sat May 24 04:51:38 2008 UTC (10 years, 9 months ago) by ksteube

Config for new installation at APAC with offscreen rendering

Revision 1568 - Directory Listing
Modified Sat May 24 03:15:08 2008 UTC (10 years, 9 months ago) by ksteube

Some testing on ac.apac.edu.au, more work needed
New pyvisi example offscreen.py for offscreen rendering

Revision 1567 - Directory Listing
Modified Thu May 22 22:52:41 2008 UTC (10 years, 9 months ago) by ksteube

scons all_tests passes on Savanna with OMP=1 and OMP=4.
New boost for Savanna.
A few more cases of #s -> %s.

Revision 1459 - Directory Listing
Modified Thu Mar 27 01:49:10 2008 UTC (10 years, 10 months ago) by ksteube

Implemented ParMETIS for mesh partition optimization under MPI.
Documented optimize=True in User Guide for Brick() and Rectangle().

Revision 1388 - Directory Listing
Modified Fri Jan 11 07:45:58 2008 UTC (11 years, 1 month ago) by trankine

And get the *(&(*&(* name right

Revision 1387 - Directory Listing
Modified Fri Jan 11 07:45:26 2008 UTC (11 years, 1 month ago) by trankine
Original Path: temp/doc

Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

Revision 1384 - Directory Listing
Modified Fri Jan 11 02:29:38 2008 UTC (11 years, 1 month ago) by phornby
Original Path: temp_trunk_copy/doc

Make a temp copy of the trunk before checking in the windows changes

Revision 1324 - Directory Listing
Modified Sun Sep 30 23:35:17 2007 UTC (11 years, 4 months ago) by ksteube

Interval mesh type has been removed from the User Guide
Adjusted getVersion method

Revision 1318 - Directory Listing
Modified Wed Sep 26 04:39:14 2007 UTC (11 years, 4 months ago) by ksteube

A very quick edit of chapter 3 of the User Guide. More editing needed.

Revision 1316 - Directory Listing
Modified Tue Sep 25 03:18:30 2007 UTC (11 years, 4 months ago) by ksteube

Quickly edited chapters 1 and 2 of the User Guide, but it needs more work.
Ran entire document through spell checker.

Revision 1216 - Directory Listing
Modified Thu Jul 12 06:20:08 2007 UTC (11 years, 7 months ago) by ksteube

Build now works on systems where doxygen is not available.
Repaired target scons guide_html_index to create HTML user guide.

Revision 1215 - Directory Listing
Modified Thu Jul 12 01:14:55 2007 UTC (11 years, 7 months ago) by ksteube

Repaired all targets for: scons docs
It runs all these targets: release_examples guide_pdf api_epydoc api_doxygen

Revision 1214 - Directory Listing
Modified Wed Jul 11 04:21:45 2007 UTC (11 years, 7 months ago) by ksteube

Add image missing from user guide

Revision 1212 - Directory Listing
Modified Thu Jul 5 00:41:19 2007 UTC (11 years, 7 months ago) by jongui

Made some minor changes to the guide.

Revision 1211 - Directory Listing
Modified Wed Jul 4 05:16:46 2007 UTC (11 years, 7 months ago) by jongui

- Fixed some minor bugs.
- Added a new feature called 'MapOnScalarClipWithRotation' that clips a two-dimensional data with a scalar value and subsequently rotating it to create a three-dimensional effect.
- Corresponding examples, test cases and documentation of the new module have also been added.

Revision 1210 - Directory Listing
Modified Tue Jul 3 05:47:34 2007 UTC (11 years, 7 months ago) by jongui

Made some minor changes.

Revision 1208 - Directory Listing
Modified Mon Jul 2 04:46:10 2007 UTC (11 years, 7 months ago) by jongui

Made some changes to the Carpet module. When 3D data is used, a cut will be performed using a plane before deformation occurs on the plane. However, if 2D data is used a cut will NOT be performed and deformation will instead occur immediately. 

Pyvisi distinguishes 2D from 3D data by retrieving the length of the z-axis. A 2D data will have a z-axis length of zero while a 3D data will have a z-axis length of non-zero. There are exceptions to these rules where some 2D data may have a non-zero z-axis length. However, such exceptions are not taken into account at this stage.

Revision 1206 - Directory Listing
Modified Fri Jun 29 06:09:19 2007 UTC (11 years, 7 months ago) by jongui

Updated the guide further.

Revision 1205 - Directory Listing
Modified Fri Jun 29 04:44:04 2007 UTC (11 years, 7 months ago) by jongui

- Fixed a minor bug in the Velocity module.
- Added the Rectangle module which enables rectangles to be created.
- Added corresponding examples and test cases for the Rectangle.
- Updated the guide and necessary epydocs.

Revision 1203 - Directory Listing
Modified Thu Jun 21 23:17:16 2007 UTC (11 years, 8 months ago) by jongui

Made some minor changes to the exampels.

Revision 1202 - Directory Listing
Modified Thu Jun 21 04:44:17 2007 UTC (11 years, 8 months ago) by jongui

Minor change to the movie example.

Revision 1201 - Directory Listing
Modified Thu Jun 21 04:42:56 2007 UTC (11 years, 8 months ago) by jongui

Added a pyvisi readme file for internal use (by Ken).

Revision 1199 - Directory Listing
Modified Wed Jun 20 05:01:30 2007 UTC (11 years, 8 months ago) by jongui

- Updated the epydocs and guide.
Deleted redundant files and methods.
Tidied up the codes.

Revision 1197 - Directory Listing
Modified Mon Jun 18 02:08:34 2007 UTC (11 years, 8 months ago) by jongui

Update the way movies are generated. Please refer to the examples. 

The user can now either specify the image range(first and last images inclusive):
mov.imageRange(input_directory = PYVISI_EXAMPLE_IMAGES_PATH,
        first_image = IMAGE_NAME + "000938.jpg",
		last_image = IMAGE_NAME + "000948.jpg")
mov.makeMovie(os.path.join(PYVISI_EXAMPLE_IMAGES_PATH, "movie.mpg"))

or the user can specify a list of images:

lst = ['image1.jpg', 'image5.jpg', 'image7.jpg]
mov.imageList(input_directory = PYVISI_EXAMPLE_IMAGES_PATH, image_list = lst)
mov.makeMovie(os.path.join(PYVISI_EXAMPLE_IMAGES_PATH, "movie.mpg"))

Revision 1194 - Directory Listing
Modified Thu Jun 14 05:53:49 2007 UTC (11 years, 8 months ago) by jongui

- Fixed a minor bug in the Camera module.
- Added some extra capability to the Movie module.
- The Camera module now has the capability to perform parallel projection by calling the 'parallelProjectionOn' method.
- The Camera at this stage is only capable of zooming towards the rendered object using 'dolly'. However, it appears that 'dolly' cannot be used to perform zooming out.

Revision 1191 - Directory Listing
Modified Tue Jun 12 05:54:41 2007 UTC (11 years, 8 months ago) by jongui

A movie can now be generated within the python script itself by creating an instace of 'Movie'. The 'Movie' instance will in turn execute the 'ppmtompeg' command. The corresponding tests and examples have also been added.

Revision 1190 - Directory Listing
Modified Fri Jun 8 05:47:25 2007 UTC (11 years, 8 months ago) by jongui

Fixed a minor bug in the scene module.

Revision 1189 - Directory Listing
Modified Thu Jun 7 05:31:25 2007 UTC (11 years, 8 months ago) by jongui

A Scalar Bar can now be displayed by creating an instance of a 'Legend'. The Scalar Bar can either show the scalar data range or vector data range. Corresponding examples and tests have also been added.

Revision 1171 - Directory Listing
Modified Fri May 25 06:55:05 2007 UTC (11 years, 9 months ago) by gross

some modifications to the tests to consider the new integration schemes for tri and tet

Revision 1169 - Directory Listing
Modified Fri May 25 03:44:14 2007 UTC (11 years, 9 months ago) by jongui

Added another example that shows the use of multiple modules in a script together.

Revision 1168 - Directory Listing
Modified Thu May 24 05:36:42 2007 UTC (11 years, 9 months ago) by jongui

Pyvisi now has the capability to save the rendered objects as VRML (.wrl) and OpenInventor (.iv) file types. Corresponding tests have also been added.

Revision 1167 - Directory Listing
Modified Thu May 24 01:04:17 2007 UTC (11 years, 9 months ago) by jongui

Deleted remaining scenes from the test cases and updated the guide.

Revision 1163 - Directory Listing
Modified Wed May 23 23:56:39 2007 UTC (11 years, 9 months ago) by gross

import of DISPLAY environment variable into scons ENV added. This is required to run pyvisi tests under XGL

Revision 1161 - Directory Listing
Modified Wed May 23 04:17:52 2007 UTC (11 years, 9 months ago) by jongui

Made some minor updates to the test.

Revision 1158 - Directory Listing
Modified Tue May 22 04:24:01 2007 UTC (11 years, 9 months ago) by jongui

Made some changes to fix the memory leak problem. However, the problem still persists for run_escript_with_lazy_evaluation.py, run_streamline.py and run_streamline_with_lazy_evaluation.py.

Revision 1154 - Directory Listing
Modified Fri May 18 02:46:32 2007 UTC (11 years, 9 months ago) by jongui

Updated the in-line documentation and guide.

Revision 1153 - Directory Listing
Modified Thu May 17 06:33:54 2007 UTC (11 years, 9 months ago) by jongui

Made some minor modifications and fixed minor bugs. Most tests appear to pass on the Altix although there are two tests which occasionally throw an error related to memory corruption.

Revision 1150 - Directory Listing
Modified Thu May 17 00:42:34 2007 UTC (11 years, 9 months ago) by jongui

Added the new images.

Revision 1148 - Directory Listing
Modified Wed May 16 22:45:33 2007 UTC (11 years, 9 months ago) by jongui

Added the updated files for pyvisi and removed some incorrect reference images.

Revision 1147 - Directory Listing
Modified Wed May 16 06:39:11 2007 UTC (11 years, 9 months ago) by ksteube

Added back in some files that were accidentally deleted.

Revision 1146 - Directory Listing
Modified Wed May 16 05:07:02 2007 UTC (11 years, 9 months ago) by jongui

Removed the old version of pyvisi.

Revision 1143 - Directory Listing
Modified Wed May 16 04:49:55 2007 UTC (11 years, 9 months ago) by jongui

some cleanup.

Revision 1133 - Directory Listing
Modified Tue May 8 07:19:33 2007 UTC (11 years, 9 months ago) by gross

Changes needed for windows. This still does not work on and has not run on linux and the altix. 
 
There are a few changes in names in the scons script, in particular _libs is used rather than _lib and _libs is always a list. By default on windows MSVC is used. The location of python is at C:\Program Files\python<version>, boost at C:\Program Files\boost and netcdf at C:\Program Files\netcdf.

Revision 1115 - Directory Listing
Modified Sun Apr 22 07:18:30 2007 UTC (11 years, 10 months ago) by jongui

The problem regarding the increasing use of memory when Map is instantiated is partially fixed. Some problems still persists when the Map instance invoke methods.

Therefore, the run_map.py auto test have been disabled for the time being.

Revision 1112 - Directory Listing
Modified Thu Apr 19 06:31:49 2007 UTC (11 years, 10 months ago) by jongui

Made some updates to the guide.

Revision 1111 - Directory Listing
Modified Thu Apr 19 05:28:19 2007 UTC (11 years, 10 months ago) by jongui

Some clean up.

Revision 1110 - Directory Listing
Modified Thu Apr 19 05:24:28 2007 UTC (11 years, 10 months ago) by jongui

Some test for the logo.

Revision 1108 - Directory Listing
Modified Thu Apr 19 04:02:11 2007 UTC (11 years, 10 months ago) by jongui

Added modules that allows logos (i.e. access logo) to be inserted together with the rendered object. An example on how to use the 'Logo' class has also been provided.

Revision 1103 - Directory Listing
Modified Wed Apr 18 04:31:06 2007 UTC (11 years, 10 months ago) by jongui

Some updates.

Revision 1102 - Directory Listing
Modified Tue Apr 17 07:16:49 2007 UTC (11 years, 10 months ago) by jongui

some cleanup.

Revision 1101 - Directory Listing
Modified Tue Apr 17 07:11:02 2007 UTC (11 years, 10 months ago) by jongui

Added some test for reading escript objects.

Revision 1100 - Directory Listing
Modified Tue Apr 17 05:36:24 2007 UTC (11 years, 10 months ago) by jongui

Fixed the problem related to the use of point and cell data. Both point and cell data should now be able to work properly together. i.e. plotting a velocity field using 'vector point data' but coloring the arrows using 'scalar cell data'.

Revision 1099 - Directory Listing
Modified Tue Apr 17 01:45:08 2007 UTC (11 years, 10 months ago) by jongui

Upated some examples.

Revision 1097 - Directory Listing
Modified Mon Apr 16 23:03:55 2007 UTC (11 years, 10 months ago) by jongui

Added more examples reading directly from escript objects.

Revision 1095 - Directory Listing
Modified Mon Apr 16 06:32:24 2007 UTC (11 years, 10 months ago) by jongui

Added some example scripts reading directly from escript objects.

Revision 1094 - Directory Listing
Modified Mon Apr 16 06:04:25 2007 UTC (11 years, 10 months ago) by jongui

Fixed the bug related to the use of the 'setData' method in the DataCollector. Reading directly from escript objects should now work.

Revision 1093 - Directory Listing
Modified Sun Apr 15 23:58:53 2007 UTC (11 years, 10 months ago) by jongui

Fixed a minor bug related to clipping vector and tensor data.

Revision 1091 - Directory Listing
Modified Fri Apr 13 01:26:22 2007 UTC (11 years, 10 months ago) by jongui

More updates to the guide.

Revision 1085 - Directory Listing
Modified Thu Apr 12 05:36:31 2007 UTC (11 years, 10 months ago) by jongui

More minor fixes to Camera.

Revision 1084 - Directory Listing
Modified Thu Apr 12 05:19:22 2007 UTC (11 years, 10 months ago) by jongui

Updated the guide and fixed a minor bug with the use of the Camera.

Revision 1082 - Directory Listing
Modified Wed Apr 11 22:33:52 2007 UTC (11 years, 10 months ago) by jongui

Made some updates to the guide.

Revision 1081 - Directory Listing
Modified Wed Apr 11 06:13:46 2007 UTC (11 years, 10 months ago) by jongui

Made some updates to the guide.

Revision 1079 - Directory Listing
Modified Tue Apr 10 04:27:31 2007 UTC (11 years, 10 months ago) by jongui

Updated more epydocs and the user guide. At this stage, a DataCollector should only be used to read either point data or cell data but not both. If both point and cell data are read using the same DataCollector, the object rendered may be incorrect.

Revision 1078 - Directory Listing
Modified Thu Apr 5 06:18:47 2007 UTC (11 years, 10 months ago) by jongui

Added and updated some epydocs.

Revision 1076 - Directory Listing
Modified Wed Apr 4 06:40:33 2007 UTC (11 years, 10 months ago) by jongui

Some updates.

Revision 1075 - Directory Listing
Modified Tue Apr 3 02:47:39 2007 UTC (11 years, 10 months ago) by jongui

Some minor cleanup.

Revision 1066 - Directory Listing
Modified Wed Mar 28 00:59:19 2007 UTC (11 years, 10 months ago) by ksteube

Second draft of pycad document...probably needs more work

Revision 1058 - Directory Listing
Modified Fri Mar 23 04:06:56 2007 UTC (11 years, 11 months ago) by jongui

Locator argument fixed.

Revision 1051 - Directory Listing
Modified Wed Mar 21 21:56:54 2007 UTC (11 years, 11 months ago) by jongui

Velocity module does not work properly with all types of files yet.

Revision 1045 - Directory Listing
Modified Tue Mar 20 01:30:58 2007 UTC (11 years, 11 months ago) by gross

some modifications on the pycad implementation to make it easier to build
interfaces for other mesh generators. The script statement generation is now
done by the Design and not the Primitive classes.

Revision 1044 - Directory Listing
Modified Mon Mar 19 07:29:31 2007 UTC (11 years, 11 months ago) by gross

clear name tagging is supported now.

Revision 1035 - Directory Listing
Modified Fri Mar 16 04:54:17 2007 UTC (11 years, 11 months ago) by jongui

Performed some cleanup of old files.

Revision 1004 - Directory Listing
Modified Thu Mar 1 04:57:31 2007 UTC (11 years, 11 months ago) by jongui

Updated the epydocs, comments and organized codes to ease readability.

Revision 1002 - Directory Listing
Modified Wed Feb 28 06:51:33 2007 UTC (11 years, 11 months ago) by jongui

Included some try/except statements for error checking and some documentation. Also fixed a bug in DataCollector.

Revision 1001 - Directory Listing
Modified Wed Feb 28 01:15:27 2007 UTC (11 years, 11 months ago) by jongui

Added diffusion_with_pyvisi.py, but the reading of multiple temporary files (created in the background) appears not to work properly. The first file is always displayed.

Revision 999 - Directory Listing
Modified Tue Feb 27 08:12:37 2007 UTC (11 years, 11 months ago) by gross

start to put some pycad documentation into the users guide

Revision 993 - Directory Listing
Modified Fri Feb 23 06:39:38 2007 UTC (12 years ago) by gross

problem with undefined value fixed.

Revision 983 - Directory Listing
Modified Tue Feb 20 02:49:08 2007 UTC (12 years ago) by gross

full Data object dump and load now available. Tests added.

Revision 971 - Directory Listing
Modified Wed Feb 14 04:40:49 2007 UTC (12 years ago) by ksteube

Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.

Revision 969 - Directory Listing
Modified Tue Feb 13 23:02:23 2007 UTC (12 years ago) by ksteube

Parallelization using MPI for solution of implicit problems.

Parallelization for explicit problems has already been accomplished in
the main SVN branch.

This is incomplete and is not ready for use.

Revision 961 - Directory Listing
Modified Tue Feb 13 01:58:48 2007 UTC (12 years ago) by jongui

Tidied up some codes

Revision 889 - Directory Listing
Modified Tue Nov 7 23:42:31 2006 UTC (12 years, 3 months ago) by jongui

drivers added

Revision 886 - Directory Listing
Modified Thu Nov 2 01:34:58 2006 UTC (12 years, 3 months ago) by jongui

- Fixed a couple of minor bugs but the bug relating to the plane normal still exists.
- Updated the documentation.

Revision 882 - Directory Listing
Modified Fri Oct 27 08:15:33 2006 UTC (12 years, 3 months ago) by jongui

Fixed some bugs in the camera module but yet to fix bugs in the plane module.

Revision 879 - Directory Listing
Modified Wed Oct 25 03:56:34 2006 UTC (12 years, 3 months ago) by jongui

First prototype of pyvisi is almost done (testing to be done). 
Added all the epydocs and latex files.

Revision 809 - Directory Listing
Modified Sun Aug 13 22:10:03 2006 UTC (12 years, 6 months ago) by gross

update of user guide'

Revision 808 - Directory Listing
Modified Fri Aug 11 01:25:16 2006 UTC (12 years, 6 months ago) by ksteube

Can now build escript and use doxygen on shake71

Revision 804 - Directory Listing
Modified Thu Aug 10 01:12:16 2006 UTC (12 years, 6 months ago) by gross

the new function swap_axes + tests added. (It replaces swap).

Revision 790 - Directory Listing
Modified Wed Jul 26 23:12:34 2006 UTC (12 years, 6 months ago) by bcumming

changes to escript/py_src/pdetools.py and /escript/src/Data.h/.cpp to
make the Locator work in MPI. escript::Data::mindp now returns a 3 tuple,
with the MPI rank of the process on which the minimum value occurs
included. escript::Data::convertToNumArrayFromDPNo also takes the ProcNo
to perform the MPI reduction.

This had to be implemented in both the MPI and non-MPI versions to allow
the necesary changes to the Python code in pdetools.py. In the non-MPI
version ProcNo is set to 0. This works for the explicit scripts tested
thus far, however if it causes problems in your scripts contact Ben or
Lutz, or revert the three files (pdetools.py, Data.h and Data.cpp) to
the previous version.

Revision 771 - Directory Listing
Modified Tue Jul 4 05:39:42 2006 UTC (12 years, 7 months ago) by ksteube

deleted test files

Revision 770 - Directory Listing
Modified Tue Jul 4 05:37:36 2006 UTC (12 years, 7 months ago) by ksteube

Ken's initial import

Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (12 years, 7 months ago) by woo409

+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)

Revision 737 - Directory Listing
Modified Wed Jun 14 04:00:41 2006 UTC (12 years, 8 months ago) by ksteube

Added a caution to be sure to set OMP_NUM_THREADS,
if unset you will get too many threads.

Also fixed a few spelling mistakes.

Revision 736 - Directory Listing
Modified Wed Jun 14 03:49:58 2006 UTC (12 years, 8 months ago) by ksteube

Fixed a couple spelling errors

Revision 734 - Directory Listing
Modified Tue Jun 13 03:55:25 2006 UTC (12 years, 8 months ago) by ksteube

Removed test file

Revision 733 - Directory Listing
Modified Tue Jun 13 03:55:10 2006 UTC (12 years, 8 months ago) by ksteube

Test file

Revision 723 - Directory Listing
Modified Wed May 3 10:29:16 2006 UTC (12 years, 9 months ago) by gross

some installation notes added to users guide

Revision 722 - Directory Listing
Modified Mon May 1 11:49:18 2006 UTC (12 years, 9 months ago) by gross

abstract added in users guide added

Revision 712 - Directory Listing
Modified Thu Apr 27 02:08:50 2006 UTC (12 years, 9 months ago) by elspeth

Fixed build of epydoc documentation. Now builds html in relase/doc/epydoc .

Revision 708 - Directory Listing
Modified Mon Apr 24 03:40:49 2006 UTC (12 years, 10 months ago) by gross

missing file added

Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (12 years, 10 months ago) by gross

latex build documentation is working now

Revision 704 - Directory Listing
Modified Thu Apr 6 02:27:37 2006 UTC (12 years, 10 months ago) by gross

some missing files (but they will be removed later)

Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (12 years, 10 months ago) by robwdcock

+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3

Revision 660 - Directory Listing
Modified Fri Mar 24 08:43:21 2006 UTC (12 years, 11 months ago) by gross

that does not look to bad now although more stuff could be added.

Revision 653 - Directory Listing
Modified Fri Mar 24 07:34:34 2006 UTC (12 years, 11 months ago) by gross

linearPDE docu fixed

Revision 643 - Directory Listing
Modified Fri Mar 24 00:28:41 2006 UTC (12 years, 11 months ago) by elspeth

More copyright info added.

Revision 625 - Directory Listing
Modified Thu Mar 23 00:41:25 2006 UTC (12 years, 11 months ago) by gross

some updates and linearPDE.tex switched off

Revision 606 - Directory Listing
Modified Mon Mar 20 23:34:00 2006 UTC (12 years, 11 months ago) by gross

documentation on pyvisi added

Revision 599 - Directory Listing
Modified Fri Mar 17 05:48:59 2006 UTC (12 years, 11 months ago) by gross

update on escript function

Revision 598 - Directory Listing
Modified Fri Mar 17 05:00:24 2006 UTC (12 years, 11 months ago) by gross

edable versions

Revision 597 - Directory Listing
Modified Fri Mar 17 04:42:57 2006 UTC (12 years, 11 months ago) by gross

Revision 593 - Directory Listing
Modified Tue Mar 14 02:50:27 2006 UTC (12 years, 11 months ago) by gross

updates on escript documentation (unfinished)

Revision 592 - Directory Listing
Modified Mon Mar 13 04:04:26 2006 UTC (12 years, 11 months ago) by lkettle

Adding some figure for online documentation (3D Wave Propagation).

Revision 586 - Directory Listing
Modified Fri Mar 10 01:24:27 2006 UTC (12 years, 11 months ago) by lkettle

corrected error in natural b.c.

Revision 582 - Directory Listing
Modified Wed Mar 8 05:54:06 2006 UTC (12 years, 11 months ago) by lkettle

Changed example script for wave.py to a point source wave propagation problem in 3D.

Revision 581 - Directory Listing
Modified Wed Mar 8 05:48:51 2006 UTC (12 years, 11 months ago) by lkettle

changes to section 2.3 on 3D wave propagation in online reference guide and added some figures

Revision 579 - Directory Listing
Modified Tue Mar 7 01:28:23 2006 UTC (12 years, 11 months ago) by gross

new section on lame equation completed

Revision 578 - Directory Listing
Modified Mon Mar 6 06:12:04 2006 UTC (12 years, 11 months ago) by gross

new section in the tutorial

Revision 575 - Directory Listing
Modified Fri Mar 3 03:33:07 2006 UTC (12 years, 11 months ago) by lkettle

I have changed some of the documentation and added more explanations for
the online reference guide for esys13. I have modified two of the
example source codes to write out the results for Helmholtz problem and
changed one variable name in the diffusion.py code to avoid confusion.

Revision 573 - Directory Listing
Modified Thu Mar 2 00:42:53 2006 UTC (12 years, 11 months ago) by lkettle

I have made a few changes to the documentation for the online reference
guide for the Poisson and diffusion examples.

Revision 572 - Directory Listing
Modified Wed Mar 1 04:40:10 2006 UTC (12 years, 11 months ago) by gross

some fixes to get Latex compiled

Revision 569 - Directory Listing
Modified Tue Feb 28 05:34:37 2006 UTC (12 years, 11 months ago) by gross

modified presentation of LinearPDE

Revision 568 - Directory Listing
Modified Tue Feb 28 03:59:06 2006 UTC (12 years, 11 months ago) by gross

update

Revision 567 - Directory Listing
Modified Tue Feb 28 03:58:05 2006 UTC (12 years, 11 months ago) by gross

updates examples

Revision 566 - Directory Listing
Modified Tue Feb 28 03:52:29 2006 UTC (12 years, 11 months ago) by gross

rename

Revision 565 - Directory Listing
Modified Mon Feb 27 00:04:17 2006 UTC (12 years, 11 months ago) by gross

some updates

Revision 498 - Directory Listing
Modified Tue Feb 7 01:53:47 2006 UTC (13 years ago) by jgs

can now specify target "build_docs" in order to build
epydoc and doxygen documentation

Revision 489 - Directory Listing
Modified Thu Feb 2 06:27:15 2006 UTC (13 years ago) by jgs

fix message file paths

Revision 488 - Directory Listing
Modified Thu Feb 2 06:19:23 2006 UTC (13 years ago) by jgs

build rundoxygen/runepydoc scripts on the fly based on platform dependant locations of these utilities

Revision 485 - Directory Listing
Modified Thu Feb 2 04:21:02 2006 UTC (13 years ago) by jgs

change scons files to match new esys_options based format

Revision 369 - Directory Listing
Modified Fri Dec 16 00:51:22 2005 UTC (13 years, 2 months ago) by cochrane

Building of API documentation now works.  Both epydoc- and doxygen-generated
docs are built.

Revision 354 - Directory Listing
Modified Wed Dec 14 04:46:17 2005 UTC (13 years, 2 months ago) by cochrane

Fixed paths for new running of docs autobuild.

Revision 343 - Directory Listing
Modified Tue Dec 13 03:39:42 2005 UTC (13 years, 2 months ago) by jgs

create build directory structure for documentation

Revision 327 - Directory Listing
Modified Wed Dec 7 04:32:28 2005 UTC (13 years, 2 months ago) by gross

make them run again

Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (13 years, 3 months ago) by jgs
Copied from: trunk/esys2/doc revision 154

move all directories from trunk/esys2 into trunk and remove esys2

Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (13 years, 5 months ago) by jgs
Original Path: trunk/esys2/doc

Merge of development branch dev-02 back to main trunk on 2005-09-01

Revision 122 - Directory Listing
Modified Thu Jun 9 05:38:05 2005 UTC (13 years, 8 months ago) by jgs
Original Path: trunk/esys2/doc

Merge of development branch back to main trunk on 2005-06-09

Revision 121 - Directory Listing
Modified Fri May 6 04:26:16 2005 UTC (13 years, 9 months ago) by jgs
Original Path: trunk/esys2/doc

Merge of development branch back to main trunk on 2005-05-06

Revision 117 - Directory Listing
Modified Fri Apr 1 05:48:57 2005 UTC (13 years, 10 months ago) by jgs
Original Path: trunk/esys2/doc

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Revision 113 - Directory Listing
Modified Mon Feb 28 07:06:33 2005 UTC (13 years, 11 months ago) by jgs
Original Path: trunk/esys2/doc

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Revision 110 - Directory Listing
Modified Mon Feb 14 04:14:42 2005 UTC (14 years ago) by jgs
Original Path: trunk/esys2/doc

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Revision 108 - Directory Listing
Modified Thu Jan 27 06:21:59 2005 UTC (14 years ago) by jgs
Original Path: trunk/esys2/doc

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Revision 107 - Directory Listing
Modified Thu Jan 27 06:21:48 2005 UTC (14 years ago) by jgs
Original Path: trunk/esys2/doc

commit of branch dev-01 back to main trunk on 2005-01-27

Revision 104 - Directory Listing
Modified Fri Dec 17 07:43:12 2004 UTC (14 years, 2 months ago) by jgs
Original Path: trunk/esys2/doc

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Revision 102 - Directory Listing
Modified Wed Dec 15 07:08:39 2004 UTC (14 years, 2 months ago) by jgs
Original Path: trunk/esys2/doc

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Revision 100 - Directory Listing
Modified Wed Dec 15 03:48:48 2004 UTC (14 years, 2 months ago) by jgs
Original Path: trunk/esys2/doc

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Revision 97 - Directory Listing
Modified Tue Dec 14 05:39:33 2004 UTC (14 years, 2 months ago) by jgs
Original Path: trunk/esys2/doc

*** empty log message ***

Revision 82 - Directory Listing
Added Tue Oct 26 06:53:54 2004 UTC (14 years, 3 months ago) by jgs
Original Path: trunk/esys2/doc

Initial revision

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