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some modification to the cookbook
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2     %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
3     %
4     % Copyright (c) 2003-2009 by University of Queensland
5     % Earth Systems Science Computational Center (ESSCC)
6     % http://www.uq.edu.au/esscc
7     %
8     % Primary Business: Queensland, Australia
9     % Licensed under the Open Software License version 3.0
10     % http://www.opensource.org/licenses/osl-3.0.php
11     %
12     %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
14 gross 2605 \chapter{Introduction}
15     \label{CHAP INTRO}
16     \section{Why \esc?}
17 gross 2861 \esc is a scripting environment for mathematical modeling based on the solutions partial differential equations (PDEs). It provides a high-level of abstraction from the underlying numerical schemes and their implementation. By absolving the user from numerical requirements like data constructs, meshing and parallelization, the user can concentrate on the modeling aspects of his problem while still properly utilising the powerful mathematical capabilities of PDEs.
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19 gross 2861 \esc is built upon the interpretive programming language \pyt\footnote{see \url{www.python.org}}; a basic scripting language with many intrinsic functions and capabilities. Additionally, there are also a large number of software packages for \pyt which can be used in conjunction with \esc. These include functions and data constructs for linear algebra, statistics, visualisation, image processing and data plotting among others. Furthermore, most \esc scripts are scalable as they are able to run on single core desktop computers right through to multi-core supercomputers\footnote{\esc supports distributed memory architectures with multi-core processors through MPI and threading. See the \esc user guide at \url{https://launchpad.net/escript-finley/+download} for details.} with no modifications to the scripts.
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21 gross 2861 There are many benefits for using a software platform like \esc for mathematical modeling projects. Developing upon an existing environment such as \esc is in many cases much simpler and more cost effective than building an original implementation from the ground up. Any modeling environment needs a data structure and solution algorithm which takes time to develop and test properly, \esc has already covered these problems and their implementations has been widely tested for bugs. While developed environments may not provide the user with the fastest algorithms for their problem, it is generally the case, that the overall time needed to identify, implement and test the optimal algorithm will exceed the time needed to implement and solve the problem with pre-developed and tested software. This is particularly true if a simulation does not need to be executed repetitively, or has relatively short lifetime. A model for a publication or thesis would be one such instance.
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23 gross 2861 When it comes to solving partial differential equations \esc is ideal, as it is especially designed for this task. Other implementations are merely an add-on to a linear algebra focused system (\textit{i.e.} MATLAB). The \esc approach gives the user a cleaner environment to work with and provides better efficiency when dealing with PDE coefficients. Data structures in \esc allow the user to abstract them self from problems like the data type of these coefficients. For example; if a model has been tested with a constant PDE coefficient the unchanged script can be run with a variable coefficient set from a data base or as a function of a dependent variable. This capability of \esc is possible because \esc uses the language of PDEs (as opposed to linear algebra) to describe a model. As it turns out, the \esc approach can efficiently be applied in very large software projects as it leads to a clearer structure for the code by separating modeling issues from low-level numerical and computational performance issues. At the same time, this arrangement also allows for the implementation of complex model coupling on a higher-level.
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25 gross 2861 The usage of \pyt as the platform for \esc makes the development of models simple from a user prospective, as \pyt is intuitive and easy to learn. This simplicity does not hamper experienced users either as \pyt also provides direct access to a very large number of tools which makes it an attractive environment to work in. Best of all, \esc is released under an open software license and is available freely for download.
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27 ahallam 2634 \section{How to use this Cookbook}
28 gross 2861 This manual is written with the intention of giving new users a practical introduction to \esc. This is achieved by demonstrating how to solve a variety of simple to advanced problems. There exist many modules, dependencies and subtleties that are properly explained throughout this cookbook. It is recommended that new users work through the
29     the \textit{first two sets of examples} in the Chapters \ref{CHAP HEAT DIFF} and \ref{CHAP HEAT 2})
30     which present the necessary basic knowledge, and explain some of the more common aspects and modules of \esc. The examples are simple, but they give reference to the implementation of PDEs, data structures, how to create models and visualising the solution.
31     Future chapters (as they are added to this tutorial) will cover more advanced topics with more complex models and methods. We also refer to the \esc user guide for more examples.
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33 ahallam 2775 The examples covered in this cookbook have all been scripted and are ready to run. They are available from the \exf folder in the \esc directory. The scripts provide a basis for users to develop their own models while at the same time demonstrating the steps required to completely solve and visualise the PDE problems.
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35 gross 2861 % All of the examples in this cookbook have been developed on a Linux based operating system.
36     % Unfortunately Windows and Mac support cannot be guaranteed. However, in most cases minor modifications to the scripts will generally solve any problems.
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38 gross 2605 \input{quickstart}
39 ahallam 2634 \input{escpybas}

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