[escript] Log of /trunk/doc/user

Revision 3002 - Directory Listing
Modified Wed Apr 7 02:25:45 2010 UTC (11 years ago) by gross

gmsh now supports the Mesh.SubdivisionAlgorithm and Mesh.Algorithm3D option.
The Mesh.Algorithm, Mesh.Smoothing, Mesh.Optimization options are now set in the
.geo file rather than in the command line.

Revision 2976 - Directory Listing
Modified Mon Mar 8 01:18:33 2010 UTC (11 years, 1 month ago) by artak

Lame equation is corrected. Options for using smoother in AMG is added. A book on AMG is cited for standard coarsening.

Revision 2960 - Directory Listing
Modified Tue Mar 2 07:54:11 2010 UTC (11 years, 1 month ago) by gross

new DarcyFlux solver

Revision 2955 - Directory Listing
Modified Mon Mar 1 00:54:37 2010 UTC (11 years, 1 month ago) by jfenwick

Fix hackscore error

Revision 2944 - Directory Listing
Modified Tue Feb 23 23:51:20 2010 UTC (11 years, 1 month ago) by jfenwick

Fix latex markup in pdf title.
It turns out \pdfinfo must come after \maketitle if you don't want the
latex version of the title.

This behaviour does not happen in evince 2.22.2 (standard in lenny) but does
happen in more recent versions.

Revision 2936 - Directory Listing
Modified Mon Feb 15 03:29:53 2010 UTC (11 years, 2 months ago) by gross

some clarification added.

Revision 2935 - Directory Listing
Modified Mon Feb 15 03:15:59 2010 UTC (11 years, 2 months ago) by gross

pycad support 3D transfinite meshing now.

Revision 2923 - Directory Listing
Modified Thu Feb 4 04:05:36 2010 UTC (11 years, 2 months ago) by jfenwick

Bringing non-release specific things from stage3.1 r2922 back to trunk

Revision 2881 - Directory Listing
Modified Thu Jan 28 02:03:15 2010 UTC (11 years, 2 months ago) by jfenwick

Don't panic.
Updating copyright stamps

Revision 2864 - Directory Listing
Modified Fri Jan 22 03:09:55 2010 UTC (11 years, 3 months ago) by gross

projector added to users guide

Revision 2851 - Directory Listing
Modified Fri Jan 15 07:37:47 2010 UTC (11 years, 3 months ago) by gross

typos fixed.

Revision 2843 - Directory Listing
Modified Thu Jan 14 05:51:28 2010 UTC (11 years, 3 months ago) by gross

new compressible solver

Revision 2793 - Directory Listing
Modified Tue Dec 1 06:10:10 2009 UTC (11 years, 4 months ago) by gross

some new util functions

Revision 2780 - Directory Listing
Modified Thu Nov 26 03:54:24 2009 UTC (11 years, 4 months ago) by jfenwick

Put the windows instructions back in.
Put more detail in the MPI hints.

Revision 2766 - Directory Listing
Modified Mon Nov 23 05:10:53 2009 UTC (11 years, 4 months ago) by jfenwick

inf, sup and Lsup now correctly handle +-infinity.
They also will return NaN if any part of their input is NaN.

This will break unit tests since it exposes the hidden bug (#447 in mantis)

This code relies on the ability to test for NaNs.
To do this it makes use of macros and functions from C99.
If you do not have a C99 compiler, then you will probably get the old behaviour.
That is, you won't know when you have NaNs.


Also did minor tweak to saveDataCSV doco.

Revision 2748 - Directory Listing
Modified Tue Nov 17 07:32:59 2009 UTC (11 years, 5 months ago) by gross

Macro elements are implemented now. VTK writer for macro elements still needs testing.

Revision 2738 - Directory Listing
Modified Fri Nov 6 05:33:13 2009 UTC (11 years, 5 months ago) by jfenwick

Taipan and DataVector use size_type (currently long) internally to talk 
about sizes.
[A lot more work needs to be done on this].
Exceptions now give nicer messages and output the problematic numbers.

Some minor doco errors fixed.

escript.util.mkDir
Now checks to see if the pathname already exists as a non-directory.
On suggestion from slanger it now calls makedirs.

Revision 2736 - Directory Listing
Modified Mon Nov 2 04:15:27 2009 UTC (11 years, 5 months ago) by caltinay

Fixed a couple of typos.

Revision 2722 - Directory Listing
Modified Fri Oct 16 06:45:01 2009 UTC (11 years, 6 months ago) by gross

First steps towards macro elements. at the monent a  macro element is identical to its counterpart of 2nd order.

Revision 2719 - Directory Listing
Modified Wed Oct 14 06:38:03 2009 UTC (11 years, 6 months ago) by gross

a new Stokes solver added

Revision 2718 - Directory Listing
Modified Wed Oct 14 04:03:27 2009 UTC (11 years, 6 months ago) by gross

syntax errors fixed.

Revision 2717 - Directory Listing
Modified Wed Oct 14 03:41:20 2009 UTC (11 years, 6 months ago) by gross

implements https://mantis.esscc.uq.edu.au/view.php?id=426

Revision 2698 - Directory Listing
Modified Wed Sep 30 01:46:31 2009 UTC (11 years, 6 months ago) by jfenwick

Removing extension from some image filenames

Revision 2695 - Directory Listing
Modified Tue Sep 29 06:29:12 2009 UTC (11 years, 6 months ago) by gross

pycad passes on more infromation from gmsh now.

Revision 2694 - Directory Listing
Modified Tue Sep 29 06:00:44 2009 UTC (11 years, 6 months ago) by gross

some hint on how to access gmsh error messages added.

Revision 2690 - Directory Listing
Modified Tue Sep 29 05:23:41 2009 UTC (11 years, 6 months ago) by gross

some description on gmsh reader added.

Revision 2685 - Directory Listing
Modified Tue Sep 29 02:22:30 2009 UTC (11 years, 6 months ago) by gross

these files are not needed

Revision 2684 - Directory Listing
Modified Tue Sep 29 02:21:11 2009 UTC (11 years, 6 months ago) by gross

added missing file

Revision 2683 - Directory Listing
Modified Tue Sep 29 02:20:22 2009 UTC (11 years, 6 months ago) by gross

documentation for pycad added.

Revision 2677 - Directory Listing
Modified Tue Sep 22 00:48:00 2009 UTC (11 years, 7 months ago) by jfenwick

Removed stuff in user guide about needing to make table larger to allow
boundary points.
The table interpolation is now OMP parallel.

Revision 2676 - Directory Listing
Modified Mon Sep 21 08:06:37 2009 UTC (11 years, 7 months ago) by gross

FaultSystem: MaxValue and MinValue return now a Locator. This makes it possible to extract values of from other data objects at the location of the min/max value

Revision 2675 - Directory Listing
Modified Mon Sep 21 02:32:17 2009 UTC (11 years, 7 months ago) by gross

getMinValue added to the fault system.

Revision 2668 - Directory Listing
Modified Thu Sep 17 04:04:09 2009 UTC (11 years, 7 months ago) by gross

some clarification in the table interpolation

Revision 2663 - Directory Listing
Modified Tue Sep 15 06:04:44 2009 UTC (11 years, 7 months ago) by gross

finally there is a 3D version for the fault system class

Revision 2656 - Directory Listing
Modified Wed Sep 9 23:47:10 2009 UTC (11 years, 7 months ago) by jfenwick

Fixing doco compile bug

Revision 2654 - Directory Listing
Modified Tue Sep 8 07:11:12 2009 UTC (11 years, 7 months ago) by gross

2D fault systems are now working. 3D still needs work.

Revision 2651 - Directory Listing
Modified Mon Sep 7 03:39:45 2009 UTC (11 years, 7 months ago) by jfenwick

Fixed latex compile error.
Fixed some overful hboxes

Revision 2647 - Directory Listing
Modified Fri Sep 4 05:25:25 2009 UTC (11 years, 7 months ago) by gross

fault system add. There is still an example for the usage missing.

Revision 2646 - Directory Listing
Modified Fri Sep 4 00:13:00 2009 UTC (11 years, 7 months ago) by jfenwick

Unit tests and user doco for interpolation and saveCSV

Revision 2605 - Directory Listing
Modified Wed Aug 12 22:30:47 2009 UTC (11 years, 8 months ago) by gross

some changes to the cook book

Revision 2596 - Directory Listing
Modified Thu Aug 6 03:09:03 2009 UTC (11 years, 8 months ago) by lgao

Add new diagnostic information: "net time" (the execution time of solver, excluding the setup time for solver and the execution time of preconditioner)

Revision 2583 - Directory Listing
Modified Wed Aug 5 01:49:56 2009 UTC (11 years, 8 months ago) by jfenwick

Minor fixes

Revision 2580 - Directory Listing
Modified Tue Aug 4 08:24:12 2009 UTC (11 years, 8 months ago) by gross

another example for the usage of matplot lib added to users guide.

Revision 2575 - Directory Listing
Modified Mon Aug 3 23:38:33 2009 UTC (11 years, 8 months ago) by jfenwick

Fixed some grammar note about Lenny not working.

Revision 2574 - Directory Listing
Modified Mon Aug 3 09:09:20 2009 UTC (11 years, 8 months ago) by gross

matplotlib description added to usersguide

Revision 2573 - Directory Listing
Modified Mon Aug 3 04:30:09 2009 UTC (11 years, 8 months ago) by gross

some more fixes on solver options.

Revision 2559 - Directory Listing
Modified Mon Jul 27 05:19:21 2009 UTC (11 years, 8 months ago) by artak

typo: MaxIter changed IterMax

Revision 2558 - Directory Listing
Modified Mon Jul 27 05:03:32 2009 UTC (11 years, 8 months ago) by gross

a table added showing the available solver options for finley paso.

Revision 2553 - Directory Listing
Modified Fri Jul 24 01:30:14 2009 UTC (11 years, 8 months ago) by jfenwick

Added another citation.

Revision 2549 - Directory Listing
Modified Mon Jul 20 06:43:47 2009 UTC (11 years, 9 months ago) by jfenwick

Remainder of copyright date fixes

Revision 2548 - Directory Listing
Modified Mon Jul 20 06:20:06 2009 UTC (11 years, 9 months ago) by jfenwick

Updating copyright notices

Revision 2540 - Directory Listing
Modified Mon Jul 20 00:09:55 2009 UTC (11 years, 9 months ago) by jfenwick

Deprecating pyvisi in the user guide.

Revision 2524 - Directory Listing
Modified Wed Jul 8 00:39:26 2009 UTC (11 years, 9 months ago) by artak

Minimum size of the coarsest level matrix option added to solver options

Revision 2515 - Directory Listing
Modified Fri Jul 3 00:59:05 2009 UTC (11 years, 9 months ago) by gross

missing files for documentation

Revision 2513 - Directory Listing
Modified Thu Jul 2 08:42:11 2009 UTC (11 years, 9 months ago) by gross

some fixes in wave.py example

Revision 2503 - Directory Listing
Modified Wed Jul 1 05:05:08 2009 UTC (11 years, 9 months ago) by jfenwick

Fixing doc build so examples tar and zip are built properly.
Fixed image filenames in user guide.

Please do not put extensions on image files.

Revision 2502 - Directory Listing
Modified Tue Jun 30 05:49:22 2009 UTC (11 years, 9 months ago) by gross

tests for examples added. utest is not working yet.

Revision 2495 - Directory Listing
Modified Fri Jun 26 03:39:21 2009 UTC (11 years, 9 months ago) by ahallam

Many revisions to Head Diff Documentation, One grammar correction to user guide.

Revision 2484 - Directory Listing
Modified Mon Jun 22 04:22:19 2009 UTC (11 years, 10 months ago) by gross

numarray removed from docu; Locator revised.

Revision 2474 - Directory Listing
Modified Tue Jun 16 06:32:15 2009 UTC (11 years, 10 months ago) by gross

linearPDEs has is now using the SolverOptions class to talk to PASO

Revision 2470 - Directory Listing
Modified Thu Jun 11 08:32:32 2009 UTC (11 years, 10 months ago) by gross

SolverOption class added. It is not linked with anything.

Revision 2467 - Directory Listing
Modified Tue Jun 9 23:12:04 2009 UTC (11 years, 10 months ago) by jfenwick

Fixed a missing file.

Revision 2463 - Directory Listing
Modified Tue Jun 9 03:51:23 2009 UTC (11 years, 10 months ago) by jfenwick

Added an svn-ignore, added changes and references section to user guide.

Revision 2455 - Directory Listing
Modified Wed Jun 3 03:29:07 2009 UTC (11 years, 10 months ago) by jfenwick

Merging changes from numpy branch.

Revision 2446 - Directory Listing
Modified Fri May 29 04:24:01 2009 UTC (11 years, 10 months ago) by gross

same adjustment of nameing

Revision 2438 - Directory Listing
Modified Tue May 26 02:26:52 2009 UTC (11 years, 10 months ago) by gross

new version of power law (blame Hans)

Revision 2433 - Directory Listing
Modified Wed May 20 08:43:43 2009 UTC (11 years, 11 months ago) by gross

some documentation on power law added

Revision 2432 - Directory Listing
Modified Wed May 20 06:06:20 2009 UTC (11 years, 11 months ago) by gross

power law and incompressible flow is running now

Revision 2429 - Directory Listing
Modified Tue May 19 10:04:54 2009 UTC (11 years, 11 months ago) by gross

pycad allows noe to set the number of elements per line and the generation of quadrilateral elements over serfaces.

Revision 2420 - Directory Listing
Modified Thu May 14 02:28:58 2009 UTC (11 years, 11 months ago) by gross

vtk writer supports now meta data and meta data schema

Revision 2417 - Directory Listing
Modified Wed May 13 08:18:47 2009 UTC (11 years, 11 months ago) by gross

some remarks on load and dump added to the users guide.

Revision 2415 - Directory Listing
Modified Wed May 13 02:48:39 2009 UTC (11 years, 11 months ago) by gross

FileWriter added: this class takes care of writing data which are global in MPI to a file. It is recommended to use this class rather then the build in open as it takes care of the case of many processors.

Revision 2404 - Directory Listing
Modified Wed Apr 29 06:53:36 2009 UTC (11 years, 11 months ago) by gross

documentation for units added.

Revision 2391 - Directory Listing
Modified Thu Apr 16 01:08:57 2009 UTC (12 years ago) by jfenwick

Minor tweak to title page.
Better handling of alternative names in SConstruct.

Revision 2390 - Directory Listing
Modified Wed Apr 15 06:46:42 2009 UTC (12 years ago) by gross

some minor fixes.

Revision 2389 - Directory Listing
Modified Wed Apr 15 06:46:01 2009 UTC (12 years ago) by gross

some minor fixes.

Revision 2387 - Directory Listing
Modified Wed Apr 15 05:05:27 2009 UTC (12 years ago) by jfenwick

Changed the figure eps->pdf to use a builder to make hypothetical windows doc building easier.

Revision 2375 - Directory Listing
Modified Tue Apr 7 04:41:28 2009 UTC (12 years ago) by gross

MPI hints added

Revision 2372 - Directory Listing
Modified Mon Apr 6 23:36:15 2009 UTC (12 years ago) by gross

changes to the urls

Revision 2371 - Directory Listing
Modified Mon Apr 6 11:48:32 2009 UTC (12 years ago) by gross

missing  citations and references added

Revision 2370 - Directory Listing
Modified Mon Apr 6 06:41:49 2009 UTC (12 years ago) by gross

some modifications to docu for MPI

Revision 2363 - Directory Listing
Modified Fri Apr 3 03:56:19 2009 UTC (12 years ago) by gross

scons should now be able to run tests under MPI and OpenMP

Revision 2361 - Directory Listing
Modified Fri Apr 3 00:37:25 2009 UTC (12 years ago) by jfenwick

Hopefully fixing the bad figures.
It turns out latex2html can not handle the optional angle= param in 
\includegraphics

Revision 2355 - Directory Listing
Modified Wed Apr 1 04:08:28 2009 UTC (12 years ago) by gross

intel MPI added.

Revision 2352 - Directory Listing
Modified Wed Apr 1 01:15:15 2009 UTC (12 years ago) by jfenwick

Updated doco to reflect changed env variables

Revision 2350 - Directory Listing
Modified Tue Mar 31 08:26:05 2009 UTC (12 years ago) by gross

more escript wrapper stuff

Revision 2345 - Directory Listing
Modified Mon Mar 30 04:44:06 2009 UTC (12 years ago) by jfenwick

Added proper man page (with formatting and everything).
Updated package description.

Revision 2343 - Directory Listing
Modified Mon Mar 30 01:34:45 2009 UTC (12 years ago) by jfenwick

Added -b option to wrapper script. For the running of non-python 
binaries.

Revision 2339 - Directory Listing
Modified Fri Mar 27 05:14:55 2009 UTC (12 years ago) by jfenwick

Fixing a bug preventing docs from building

Revision 2338 - Directory Listing
Modified Fri Mar 27 05:01:49 2009 UTC (12 years ago) by jfenwick

Added vars for mpi_flavour
Output correct version into the user guide

Revision 2337 - Directory Listing
Modified Thu Mar 26 07:07:42 2009 UTC (12 years ago) by gross

Transport class uses now useBackwardEuler rather than the mysterious theta.

Revision 2336 - Directory Listing
Modified Thu Mar 26 06:09:20 2009 UTC (12 years ago) by jfenwick

Fixed title for pdf builds.
All the peices build now. (There are still issues with Figure 1.7 in the html version).

Revision 2335 - Directory Listing
Modified Thu Mar 26 04:33:44 2009 UTC (12 years ago) by jfenwick

The user guide now builds under pdflatex (if you have converted the figures). Unfortunately, it has a really ugly title.

Revision 2332 - Directory Listing
Modified Tue Mar 24 01:13:08 2009 UTC (12 years, 1 month ago) by jfenwick

Added new options to the escript wrapper.
This populates all the variables described in the documentation but does 
not necessarily do anything with them.

Fixed minor typo in doco.

Revision 2331 - Directory Listing
Modified Mon Mar 23 01:18:21 2009 UTC (12 years, 1 month ago) by jfenwick

Updated the escript execution section.
Added a few references.

Revision 2318 - Directory Listing
Modified Thu Mar 19 03:18:11 2009 UTC (12 years, 1 month ago) by gross

more on MPI in the users guide.

Revision 2316 - Directory Listing
Modified Thu Mar 19 01:22:15 2009 UTC (12 years, 1 month ago) by gross

some documentation on the escript wrapper added.

Revision 2313 - Directory Listing
Modified Tue Mar 17 03:41:17 2009 UTC (12 years, 1 month ago) by gross

pyvisi is now rejecting to work under MPI with more than 1 processor. Tests for this configuration are dropped now.

Revision 2304 - Directory Listing
Modified Fri Mar 13 03:17:24 2009 UTC (12 years, 1 month ago) by gross

a more robust way of doing whereZero and whereNotZero.

Revision 2300 - Directory Listing
Modified Wed Mar 11 08:17:57 2009 UTC (12 years, 1 month ago) by gross

a power law model. tests still need to be added and needs to be linked with an incompressible solver.

Revision 2287 - Directory Listing
Modified Tue Feb 24 04:29:17 2009 UTC (12 years, 1 month ago) by jfenwick

Added skeleton of install guide.
Removed some files which come in the standard texlive distro anyway.
Updated README_LICENSE to list python tex styles.

Revision 2264 - Directory Listing
Modified Wed Feb 11 06:48:28 2009 UTC (12 years, 2 months ago) by gross

a new darcy flux solver.

Revision 2252 - Directory Listing
Modified Fri Feb 6 07:51:28 2009 UTC (12 years, 2 months ago) by gross

some notes for the kelvin model added. Implementation is still missing

Revision 2251 - Directory Listing
Modified Fri Feb 6 06:50:39 2009 UTC (12 years, 2 months ago) by gross

new compressible flow solver

Revision 2208 - Directory Listing
Modified Mon Jan 12 06:37:07 2009 UTC (12 years, 3 months ago) by gross

more work on the dary solver

Revision 2193 - Directory Listing
Modified Mon Jan 5 04:29:06 2009 UTC (12 years, 3 months ago) by lgraham

Edited Stokes flow and Level Set tutorials (grammar etc.)

Revision 2192 - Directory Listing
Modified Mon Jan 5 02:41:34 2009 UTC (12 years, 3 months ago) by lgraham

Edited Stokes flow tutorial

Revision 2191 - Directory Listing
Modified Mon Jan 5 00:30:15 2009 UTC (12 years, 3 months ago) by lgraham

Included a tutorial on fluid flow, using the StokesProblemCartesian class

Revision 2182 - Directory Listing
Modified Thu Dec 18 03:30:17 2008 UTC (12 years, 4 months ago) by caltinay

Fixed some more typos

Revision 2181 - Directory Listing
Modified Thu Dec 18 00:58:48 2008 UTC (12 years, 4 months ago) by caltinay

Fixed two typos in bibliography

Revision 2156 - Directory Listing
Modified Mon Dec 15 05:09:02 2008 UTC (12 years, 4 months ago) by gross

some modifications to the iterative solver to make them easier to use. 
There are also improved versions of the Darcy flux solver and the incompressible solver.

Revision 2148 - Directory Listing
Modified Wed Dec 10 04:57:35 2008 UTC (12 years, 4 months ago) by lgraham

Updated the LevelSet class section in the Models chapter. The section is contained in a .tex file at the moment to avoid conflict.

Revision 2138 - Directory Listing
Modified Mon Dec 8 02:27:07 2008 UTC (12 years, 4 months ago) by lgraham

starting a section for the Level Set class in the Models chapter.

Revision 2128 - Directory Listing
Modified Thu Dec 4 03:48:22 2008 UTC (12 years, 4 months ago) by lgraham

Added description of Rayleigh-Taylor instability python script, and a note on visualising the output with visit.

Revision 2127 - Directory Listing
Modified Thu Dec 4 03:42:45 2008 UTC (12 years, 4 months ago) by lgraham

added figures of simulation output for Rayleigh-Taylor instability; produced by visIt

Revision 2121 - Directory Listing
Modified Wed Dec 3 00:25:08 2008 UTC (12 years, 4 months ago) by jfenwick

Removing pdf from repository.

Revision 2120 - Directory Listing
Modified Tue Dec 2 06:21:49 2008 UTC (12 years, 4 months ago) by lgraham

Added Rayleigh-Taylor instability code into users guide

Revision 2115 - Directory Listing
Modified Tue Dec 2 01:21:07 2008 UTC (12 years, 4 months ago) by lgraham

Added in theory of the reinitialisation procedure for the level set method.

Revision 2108 - Directory Listing
Modified Fri Nov 28 05:09:23 2008 UTC (12 years, 4 months ago) by gross

some minor changes to PCG and some extra suspicious characters.

Revision 2104 - Directory Listing
Modified Thu Nov 27 05:36:47 2008 UTC (12 years, 4 months ago) by jfenwick

Fixed non-compilage.
Removed mysterious t and t! from output.

Revision 2100 - Directory Listing
Modified Wed Nov 26 08:13:00 2008 UTC (12 years, 4 months ago) by gross

This commit cleans up the incompressible solver and adds a DarcyFlux solver in model module. 
Some documentation for both classes has been added.
The convection code is only linear at the moment.

Revision 2061 - Directory Listing
Modified Wed Nov 19 03:40:21 2008 UTC (12 years, 5 months ago) by jfenwick

Fixing some warnings from epydoc.
Disabled c++ signatures in python docstrings.
Removed references to Bruce in epydoc and the users guide.

Revision 2006 - Directory Listing
Modified Mon Nov 10 03:07:08 2008 UTC (12 years, 5 months ago) by jfenwick

Updating svn:ignore properties.

Revision 1978 - Directory Listing
Modified Thu Nov 6 04:21:23 2008 UTC (12 years, 5 months ago) by artak

MINRES, TFQMR, GS are added

Revision 1973 - Directory Listing
Modified Thu Nov 6 02:31:37 2008 UTC (12 years, 5 months ago) by lgraham

Tidied up the white space between the equations and fixed gramma in the Rayleigh-Taylor Instability (levelset) tutorial.
Will include Escript code soon.

Revision 1971 - Directory Listing
Modified Thu Nov 6 01:11:23 2008 UTC (12 years, 5 months ago) by artak

Some typos fixed. The rearagments of figure 1, and footnotes added to avoid confusion.

Revision 1966 - Directory Listing
Modified Wed Nov 5 04:59:22 2008 UTC (12 years, 5 months ago) by jfenwick

Some more fixes to user guide.

Revision 1964 - Directory Listing
Modified Wed Nov 5 03:21:31 2008 UTC (12 years, 5 months ago) by caltinay

user's guide: Reviewed and updated pyvisi documentation.

Revision 1963 - Directory Listing
Modified Wed Nov 5 03:20:24 2008 UTC (12 years, 5 months ago) by caltinay

user's guide: Fixed some typos.

Revision 1959 - Directory Listing
Modified Tue Nov 4 01:49:19 2008 UTC (12 years, 5 months ago) by jfenwick

More fixes to doco.

Revision 1958 - Directory Listing
Modified Mon Nov 3 23:47:16 2008 UTC (12 years, 5 months ago) by jfenwick

Fixed URL to python doc in guide_defs

Revision 1957 - Directory Listing
Modified Mon Nov 3 06:14:18 2008 UTC (12 years, 5 months ago) by jfenwick

Some fixes to user guide

Revision 1955 - Directory Listing
Modified Fri Oct 31 04:01:24 2008 UTC (12 years, 5 months ago) by jfenwick

Fixed some macros so they don't add extra spaces.
Switched from input to include for chapters for faster recompile.

Revision 1941 - Directory Listing
Modified Tue Oct 28 07:51:49 2008 UTC (12 years, 5 months ago) by ksteube

Updated installation directions in the User Guide to simply
point to the instructions on the wiki, which I have already
updated extensively.

Revision 1878 - Directory Listing
Modified Tue Oct 14 03:39:13 2008 UTC (12 years, 6 months ago) by gross

new version of JacobiFree Newton GMRES + test added.

Revision 1859 - Directory Listing
Modified Wed Oct 8 03:03:37 2008 UTC (12 years, 6 months ago) by gross

first version of testing for transport solver.

Revision 1841 - Directory Listing
Modified Fri Oct 3 03:57:52 2008 UTC (12 years, 6 months ago) by gross

modification on LinearPDE class and a first version of Transport class

Revision 1830 - Directory Listing
Modified Thu Oct 2 06:51:48 2008 UTC (12 years, 6 months ago) by ksteube

Tests using JoinFaces() and domain.write() will not work under MPI and must be disabled for num procs > 1

Revision 1811 - Directory Listing
Modified Thu Sep 25 23:11:13 2008 UTC (12 years, 6 months ago) by ksteube

Copyright updated in all files

Revision 1805 - Directory Listing
Modified Wed Sep 24 23:39:00 2008 UTC (12 years, 6 months ago) by ksteube

Added python-level methods getMPISizeWorld() and getMPIRankWorld() for MPI process info.
Test suite run_inputOutput.py runs on any number of cores now, hybrid may still be a problem.

Revision 1746 - Directory Listing
Modified Wed Sep 3 01:24:16 2008 UTC (12 years, 7 months ago) by lgraham

Corrected plus (+) sign in Equation (2.54) for elastic tensor, and (2.60) for von Mises stress.

Revision 1709 - Directory Listing
Modified Fri Aug 15 01:09:45 2008 UTC (12 years, 8 months ago) by lgraham

added separate section for Einstein notation

Revision 1705 - Directory Listing
Modified Thu Aug 14 05:56:40 2008 UTC (12 years, 8 months ago) by ksteube

Branch scons-dev is hereby closed.
Some parts of scons scripts have been re-written.

Revision 1702 - Directory Listing
Modified Thu Aug 14 04:10:23 2008 UTC (12 years, 8 months ago) by lgraham

added in latex file for models chapter

Revision 1701 - Directory Listing
Modified Thu Aug 14 04:05:15 2008 UTC (12 years, 8 months ago) by lgraham

comments for rev 1700.
Ran through spell checker for tutorial chapters.
Added in a tutorial chapter introducing the level set method with the Rayleigh-Taylor instability problem. Need to add python code at a later date for level set class.
Started to write up a chapter on model classes, e.g. StokesProblemCartesian, LevelSet, DurckerPrager, and TemperatureCartesian etc.

Revision 1700 - Directory Listing
Modified Thu Aug 14 03:35:46 2008 UTC (12 years, 8 months ago) by lgraham

Revision 1567 - Directory Listing
Modified Thu May 22 22:52:41 2008 UTC (12 years, 11 months ago) by ksteube

scons all_tests passes on Savanna with OMP=1 and OMP=4.
New boost for Savanna.
A few more cases of #s -> %s.

Revision 1459 - Directory Listing
Modified Thu Mar 27 01:49:10 2008 UTC (13 years ago) by ksteube

Implemented ParMETIS for mesh partition optimization under MPI.
Documented optimize=True in User Guide for Brick() and Rectangle().

Revision 1388 - Directory Listing
Modified Fri Jan 11 07:45:58 2008 UTC (13 years, 3 months ago) by trankine

And get the *(&(*&(* name right

Revision 1387 - Directory Listing
Modified Fri Jan 11 07:45:26 2008 UTC (13 years, 3 months ago) by trankine
Original Path: temp/doc/user

Restore the trunk that existed before the windows changes were committed to the (now moved to branches) old trunk.

Revision 1384 - Directory Listing
Modified Fri Jan 11 02:29:38 2008 UTC (13 years, 3 months ago) by phornby
Original Path: temp_trunk_copy/doc/user

Make a temp copy of the trunk before checking in the windows changes

Revision 1324 - Directory Listing
Modified Sun Sep 30 23:35:17 2007 UTC (13 years, 6 months ago) by ksteube

Interval mesh type has been removed from the User Guide
Adjusted getVersion method

Revision 1318 - Directory Listing
Modified Wed Sep 26 04:39:14 2007 UTC (13 years, 6 months ago) by ksteube

A very quick edit of chapter 3 of the User Guide. More editing needed.

Revision 1316 - Directory Listing
Modified Tue Sep 25 03:18:30 2007 UTC (13 years, 6 months ago) by ksteube

Quickly edited chapters 1 and 2 of the User Guide, but it needs more work.
Ran entire document through spell checker.

Revision 1214 - Directory Listing
Modified Wed Jul 11 04:21:45 2007 UTC (13 years, 9 months ago) by ksteube

Add image missing from user guide

Revision 1212 - Directory Listing
Modified Thu Jul 5 00:41:19 2007 UTC (13 years, 9 months ago) by jongui

Made some minor changes to the guide.

Revision 1211 - Directory Listing
Modified Wed Jul 4 05:16:46 2007 UTC (13 years, 9 months ago) by jongui

- Fixed some minor bugs.
- Added a new feature called 'MapOnScalarClipWithRotation' that clips a two-dimensional data with a scalar value and subsequently rotating it to create a three-dimensional effect.
- Corresponding examples, test cases and documentation of the new module have also been added.

Revision 1210 - Directory Listing
Modified Tue Jul 3 05:47:34 2007 UTC (13 years, 9 months ago) by jongui

Made some minor changes.

Revision 1206 - Directory Listing
Modified Fri Jun 29 06:09:19 2007 UTC (13 years, 9 months ago) by jongui

Updated the guide further.

Revision 1205 - Directory Listing
Modified Fri Jun 29 04:44:04 2007 UTC (13 years, 9 months ago) by jongui

- Fixed a minor bug in the Velocity module.
- Added the Rectangle module which enables rectangles to be created.
- Added corresponding examples and test cases for the Rectangle.
- Updated the guide and necessary epydocs.

Revision 1199 - Directory Listing
Modified Wed Jun 20 05:01:30 2007 UTC (13 years, 10 months ago) by jongui

- Updated the epydocs and guide.
Deleted redundant files and methods.
Tidied up the codes.

Revision 1194 - Directory Listing
Modified Thu Jun 14 05:53:49 2007 UTC (13 years, 10 months ago) by jongui

- Fixed a minor bug in the Camera module.
- Added some extra capability to the Movie module.
- The Camera module now has the capability to perform parallel projection by calling the 'parallelProjectionOn' method.
- The Camera at this stage is only capable of zooming towards the rendered object using 'dolly'. However, it appears that 'dolly' cannot be used to perform zooming out.

Revision 1167 - Directory Listing
Modified Thu May 24 01:04:17 2007 UTC (13 years, 11 months ago) by jongui

Deleted remaining scenes from the test cases and updated the guide.

Revision 1154 - Directory Listing
Modified Fri May 18 02:46:32 2007 UTC (13 years, 11 months ago) by jongui

Updated the in-line documentation and guide.

Revision 1143 - Directory Listing
Modified Wed May 16 04:49:55 2007 UTC (13 years, 11 months ago) by jongui

some cleanup.

Revision 1112 - Directory Listing
Modified Thu Apr 19 06:31:49 2007 UTC (14 years ago) by jongui

Made some updates to the guide.

Revision 1108 - Directory Listing
Modified Thu Apr 19 04:02:11 2007 UTC (14 years ago) by jongui

Added modules that allows logos (i.e. access logo) to be inserted together with the rendered object. An example on how to use the 'Logo' class has also been provided.

Revision 1099 - Directory Listing
Modified Tue Apr 17 01:45:08 2007 UTC (14 years ago) by jongui

Upated some examples.

Revision 1091 - Directory Listing
Modified Fri Apr 13 01:26:22 2007 UTC (14 years ago) by jongui

More updates to the guide.

Revision 1084 - Directory Listing
Modified Thu Apr 12 05:19:22 2007 UTC (14 years ago) by jongui

Updated the guide and fixed a minor bug with the use of the Camera.

Revision 1082 - Directory Listing
Modified Wed Apr 11 22:33:52 2007 UTC (14 years ago) by jongui

Made some updates to the guide.

Revision 1081 - Directory Listing
Modified Wed Apr 11 06:13:46 2007 UTC (14 years ago) by jongui

Made some updates to the guide.

Revision 1079 - Directory Listing
Modified Tue Apr 10 04:27:31 2007 UTC (14 years ago) by jongui

Updated more epydocs and the user guide. At this stage, a DataCollector should only be used to read either point data or cell data but not both. If both point and cell data are read using the same DataCollector, the object rendered may be incorrect.

Revision 1078 - Directory Listing
Modified Thu Apr 5 06:18:47 2007 UTC (14 years ago) by jongui

Added and updated some epydocs.

Revision 1076 - Directory Listing
Modified Wed Apr 4 06:40:33 2007 UTC (14 years ago) by jongui

Some updates.

Revision 1066 - Directory Listing
Modified Wed Mar 28 00:59:19 2007 UTC (14 years ago) by ksteube

Second draft of pycad document...probably needs more work

Revision 1051 - Directory Listing
Modified Wed Mar 21 21:56:54 2007 UTC (14 years, 1 month ago) by jongui

Velocity module does not work properly with all types of files yet.

Revision 1045 - Directory Listing
Modified Tue Mar 20 01:30:58 2007 UTC (14 years, 1 month ago) by gross

some modifications on the pycad implementation to make it easier to build
interfaces for other mesh generators. The script statement generation is now
done by the Design and not the Primitive classes.

Revision 1044 - Directory Listing
Modified Mon Mar 19 07:29:31 2007 UTC (14 years, 1 month ago) by gross

clear name tagging is supported now.

Revision 1035 - Directory Listing
Modified Fri Mar 16 04:54:17 2007 UTC (14 years, 1 month ago) by jongui

Performed some cleanup of old files.

Revision 1002 - Directory Listing
Modified Wed Feb 28 06:51:33 2007 UTC (14 years, 1 month ago) by jongui

Included some try/except statements for error checking and some documentation. Also fixed a bug in DataCollector.

Revision 999 - Directory Listing
Modified Tue Feb 27 08:12:37 2007 UTC (14 years, 1 month ago) by gross

start to put some pycad documentation into the users guide

Revision 993 - Directory Listing
Modified Fri Feb 23 06:39:38 2007 UTC (14 years, 1 month ago) by gross

problem with undefined value fixed.

Revision 983 - Directory Listing
Modified Tue Feb 20 02:49:08 2007 UTC (14 years, 2 months ago) by gross

full Data object dump and load now available. Tests added.

Revision 971 - Directory Listing
Modified Wed Feb 14 04:40:49 2007 UTC (14 years, 2 months ago) by ksteube

Had to undo commit to new MPI branch. The changes went into the original and
not the branch. The files committed here are exactly the same as revision 969.

Revision 969 - Directory Listing
Modified Tue Feb 13 23:02:23 2007 UTC (14 years, 2 months ago) by ksteube

Parallelization using MPI for solution of implicit problems.

Parallelization for explicit problems has already been accomplished in
the main SVN branch.

This is incomplete and is not ready for use.

Revision 961 - Directory Listing
Modified Tue Feb 13 01:58:48 2007 UTC (14 years, 2 months ago) by jongui

Tidied up some codes

Revision 889 - Directory Listing
Modified Tue Nov 7 23:42:31 2006 UTC (14 years, 5 months ago) by jongui

drivers added

Revision 886 - Directory Listing
Modified Thu Nov 2 01:34:58 2006 UTC (14 years, 5 months ago) by jongui

- Fixed a couple of minor bugs but the bug relating to the plane normal still exists.
- Updated the documentation.

Revision 882 - Directory Listing
Modified Fri Oct 27 08:15:33 2006 UTC (14 years, 5 months ago) by jongui

Fixed some bugs in the camera module but yet to fix bugs in the plane module.

Revision 879 - Directory Listing
Modified Wed Oct 25 03:56:34 2006 UTC (14 years, 5 months ago) by jongui

First prototype of pyvisi is almost done (testing to be done). 
Added all the epydocs and latex files.

Revision 809 - Directory Listing
Modified Sun Aug 13 22:10:03 2006 UTC (14 years, 8 months ago) by gross

update of user guide'

Revision 804 - Directory Listing
Modified Thu Aug 10 01:12:16 2006 UTC (14 years, 8 months ago) by gross

the new function swap_axes + tests added. (It replaces swap).

Revision 790 - Directory Listing
Modified Wed Jul 26 23:12:34 2006 UTC (14 years, 8 months ago) by bcumming

changes to escript/py_src/pdetools.py and /escript/src/Data.h/.cpp to
make the Locator work in MPI. escript::Data::mindp now returns a 3 tuple,
with the MPI rank of the process on which the minimum value occurs
included. escript::Data::convertToNumArrayFromDPNo also takes the ProcNo
to perform the MPI reduction.

This had to be implemented in both the MPI and non-MPI versions to allow
the necesary changes to the Python code in pdetools.py. In the non-MPI
version ProcNo is set to 0. This works for the explicit scripts tested
thus far, however if it causes problems in your scripts contact Ben or
Lutz, or revert the three files (pdetools.py, Data.h and Data.cpp) to
the previous version.

Revision 757 - Directory Listing
Modified Mon Jun 26 13:12:56 2006 UTC (14 years, 9 months ago) by woo409

+ Merge of intelc_win32 branch (revision 741:755) with trunk. Tested on iVEC altix (run_tests and py_tests all pass)

Revision 737 - Directory Listing
Modified Wed Jun 14 04:00:41 2006 UTC (14 years, 10 months ago) by ksteube

Added a caution to be sure to set OMP_NUM_THREADS,
if unset you will get too many threads.

Also fixed a few spelling mistakes.

Revision 736 - Directory Listing
Modified Wed Jun 14 03:49:58 2006 UTC (14 years, 10 months ago) by ksteube

Fixed a couple spelling errors

Revision 723 - Directory Listing
Modified Wed May 3 10:29:16 2006 UTC (14 years, 11 months ago) by gross

some installation notes added to users guide

Revision 722 - Directory Listing
Modified Mon May 1 11:49:18 2006 UTC (14 years, 11 months ago) by gross

abstract added in users guide added

Revision 712 - Directory Listing
Modified Thu Apr 27 02:08:50 2006 UTC (14 years, 11 months ago) by elspeth

Fixed build of epydoc documentation. Now builds html in relase/doc/epydoc .

Revision 708 - Directory Listing
Modified Mon Apr 24 03:40:49 2006 UTC (15 years ago) by gross

missing file added

Revision 707 - Directory Listing
Modified Wed Apr 12 23:58:02 2006 UTC (15 years ago) by gross

latex build documentation is working now

Revision 682 - Directory Listing
Modified Mon Mar 27 02:43:09 2006 UTC (15 years ago) by robwdcock

+ NEW BUILD SYSTEM

This commit contains the new build system with cross-platform support.
Most things work are before though you can have more control.

ENVIRONMENT settings have changed:
+ You no longer require LD_LIBRARY_PATH or PYTHONPATH to point to the
esysroot for building and testing performed via scons
+ ACcESS altix users: It is recommended you change your modules to load
the latest intel compiler and other libraries required by boost to match
the setup in svn (you can override). The correct modules are as follows

module load intel_cc.9.0.026
export
MODULEPATH=${MODULEPATH}:/data/raid2/toolspp4/modulefiles/gcc-3.3.6
module load boost/1.33.0/python-2.4.1
module load python/2.4.1
module load numarray/1.3.3

Revision 660 - Directory Listing
Modified Fri Mar 24 08:43:21 2006 UTC (15 years, 1 month ago) by gross

that does not look to bad now although more stuff could be added.

Revision 653 - Directory Listing
Modified Fri Mar 24 07:34:34 2006 UTC (15 years, 1 month ago) by gross

linearPDE docu fixed

Revision 625 - Directory Listing
Modified Thu Mar 23 00:41:25 2006 UTC (15 years, 1 month ago) by gross

some updates and linearPDE.tex switched off

Revision 606 - Directory Listing
Modified Mon Mar 20 23:34:00 2006 UTC (15 years, 1 month ago) by gross

documentation on pyvisi added

Revision 599 - Directory Listing
Modified Fri Mar 17 05:48:59 2006 UTC (15 years, 1 month ago) by gross

update on escript function

Revision 598 - Directory Listing
Modified Fri Mar 17 05:00:24 2006 UTC (15 years, 1 month ago) by gross

edable versions

Revision 597 - Directory Listing
Modified Fri Mar 17 04:42:57 2006 UTC (15 years, 1 month ago) by gross

Revision 593 - Directory Listing
Modified Tue Mar 14 02:50:27 2006 UTC (15 years, 1 month ago) by gross

updates on escript documentation (unfinished)

Revision 592 - Directory Listing
Modified Mon Mar 13 04:04:26 2006 UTC (15 years, 1 month ago) by lkettle

Adding some figure for online documentation (3D Wave Propagation).

Revision 586 - Directory Listing
Modified Fri Mar 10 01:24:27 2006 UTC (15 years, 1 month ago) by lkettle

corrected error in natural b.c.

Revision 582 - Directory Listing
Modified Wed Mar 8 05:54:06 2006 UTC (15 years, 1 month ago) by lkettle

Changed example script for wave.py to a point source wave propagation problem in 3D.

Revision 581 - Directory Listing
Modified Wed Mar 8 05:48:51 2006 UTC (15 years, 1 month ago) by lkettle

changes to section 2.3 on 3D wave propagation in online reference guide and added some figures

Revision 579 - Directory Listing
Modified Tue Mar 7 01:28:23 2006 UTC (15 years, 1 month ago) by gross

new section on lame equation completed

Revision 578 - Directory Listing
Modified Mon Mar 6 06:12:04 2006 UTC (15 years, 1 month ago) by gross

new section in the tutorial

Revision 575 - Directory Listing
Modified Fri Mar 3 03:33:07 2006 UTC (15 years, 1 month ago) by lkettle

I have changed some of the documentation and added more explanations for
the online reference guide for esys13. I have modified two of the
example source codes to write out the results for Helmholtz problem and
changed one variable name in the diffusion.py code to avoid confusion.

Revision 573 - Directory Listing
Modified Thu Mar 2 00:42:53 2006 UTC (15 years, 1 month ago) by lkettle

I have made a few changes to the documentation for the online reference
guide for the Poisson and diffusion examples.

Revision 572 - Directory Listing
Modified Wed Mar 1 04:40:10 2006 UTC (15 years, 1 month ago) by gross

some fixes to get Latex compiled

Revision 569 - Directory Listing
Modified Tue Feb 28 05:34:37 2006 UTC (15 years, 1 month ago) by gross

modified presentation of LinearPDE

Revision 568 - Directory Listing
Modified Tue Feb 28 03:59:06 2006 UTC (15 years, 1 month ago) by gross

update

Revision 567 - Directory Listing
Modified Tue Feb 28 03:58:05 2006 UTC (15 years, 1 month ago) by gross

updates examples

Revision 566 - Directory Listing
Modified Tue Feb 28 03:52:29 2006 UTC (15 years, 1 month ago) by gross

rename

Revision 565 - Directory Listing
Modified Mon Feb 27 00:04:17 2006 UTC (15 years, 1 month ago) by gross

some updates

Revision 327 - Directory Listing
Modified Wed Dec 7 04:32:28 2005 UTC (15 years, 4 months ago) by gross

make them run again

Revision 155 - Directory Listing
Modified Wed Nov 9 02:02:19 2005 UTC (15 years, 5 months ago) by jgs

move all directories from trunk/esys2 into trunk and remove esys2

Revision 149 - Directory Listing
Modified Thu Sep 1 03:31:39 2005 UTC (15 years, 7 months ago) by jgs
Original Path: trunk/esys2/doc/user

Merge of development branch dev-02 back to main trunk on 2005-09-01

Revision 121 - Directory Listing
Modified Fri May 6 04:26:16 2005 UTC (15 years, 11 months ago) by jgs
Original Path: trunk/esys2/doc/user

Merge of development branch back to main trunk on 2005-05-06

Revision 117 - Directory Listing
Modified Fri Apr 1 05:48:57 2005 UTC (16 years ago) by jgs
Original Path: trunk/esys2/doc/user

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Revision 113 - Directory Listing
Modified Mon Feb 28 07:06:33 2005 UTC (16 years, 1 month ago) by jgs
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Revision 110 - Directory Listing
Modified Mon Feb 14 04:14:42 2005 UTC (16 years, 2 months ago) by jgs
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Revision 108 - Directory Listing
Modified Thu Jan 27 06:21:59 2005 UTC (16 years, 2 months ago) by jgs
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Revision 107 - Directory Listing
Modified Thu Jan 27 06:21:48 2005 UTC (16 years, 2 months ago) by jgs
Original Path: trunk/esys2/doc/user

commit of branch dev-01 back to main trunk on 2005-01-27

Revision 104 - Directory Listing
Modified Fri Dec 17 07:43:12 2004 UTC (16 years, 4 months ago) by jgs
Original Path: trunk/esys2/doc/user

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Revision 102 - Directory Listing
Modified Wed Dec 15 07:08:39 2004 UTC (16 years, 4 months ago) by jgs
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Revision 100 - Directory Listing
Modified Wed Dec 15 03:48:48 2004 UTC (16 years, 4 months ago) by jgs
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Revision 97 - Directory Listing
Modified Tue Dec 14 05:39:33 2004 UTC (16 years, 4 months ago) by jgs
Original Path: trunk/esys2/doc/user

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Revision 82 - Directory Listing
Added Tue Oct 26 06:53:54 2004 UTC (16 years, 5 months ago) by jgs
Original Path: trunk/esys2/doc/user

Initial revision

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