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1 gross 2484 Created by Kbib version 0.6.5
2     \#Last modified: Wed May 20 10:08:05 2009
3 jgs 102
4 gross 2484 @Book{ SAAD,
5     author = "Y. Saad",
6 gross 3502 title = "{Iterative Methods for Sparse Linear Systems}",
7 gross 2484 publisher = "PWS Publishing Company",
8     year = "1996",
9     address = "20 Park Plaza, Boston, MA 02116, USA"
10 gross 2371 }
11 jfenwick 1966
12 gross 2484 @Book{ WEISS,
13     author = "R. Weiss",
14 gross 3502 title = "{Parameter-Free Iterative Linear Solvers}",
15 gross 2484 publisher = "Akademie Verlag",
16     year = "1996",
17 gross 3502 series = "{Mathematical Research, vol.\ 97}",
18 gross 2484 address = "Berlin"
19 jfenwick 1966 }
20    
21 artak 2976 @Book{ Multigrid,
22 gross 3502 author = {U. Trottenberg and C. W. Oosterlee and A. Sch{\"u}ller},
23     title = "{Multigrid}",
24 artak 2976 publisher = "Academic Press",
25     year = "2001"
26     }
27    
28 gross 2484 @Book{ AMG,
29     author = "Y. Shapira",
30 gross 3502 title = "{Matrix-Based Multigrid}",
31 gross 2484 publisher = "Springer",
32     year = "2008"
33 gross 2371 }
34 jgs 102
35 gross 2484 @Book{ NumHand,
36     author = "P.~G. Ciarlet and J.~L. Lions",
37 gross 3502 title = "{Handbook of Numerical Analysis}",
38 gross 2484 publisher = "North Holland",
39     year = "1991",
40     volume = "2",
41     address = "Amsterdam"
42 gross 2371 }
43 jgs 102
44 gross 2484 @InProceedings{ NUMARRAY,
45 gross 3502 title = "{An Array Module for Python}",
46     booktitle = "{Astronomical Data Analysis Software and Systems XI}",
47     author = "Todd Miller and Jin-Chung Hsu and Perry Greenfield and Richard L. White",
48 gross 2484 year = "2001"
49 jgs 113 }
50    
51 gross 2484 @Book{ Zienc,
52     author = "O.~C. Zienkiewicz",
53 gross 3502 title = "{The Finite Element Method in Engineering Science}",
54 gross 2484 publisher = "McGraw-Hill",
55     year = "1971",
56     address = "London",
57     edition = "second"
58 gross 2371 }
59    
60 gross 2484 @Article{ SUPG2,
61     author = "H.C. Elman and A. Ramage",
62 gross 3502 title = "{An Analysis of Smoothing Effects of Upwinding Strategies For The Convection-Diffusion Equation}",
63 gross 2484 journal = "SIAM J. Numer. Anal.",
64     year = "2002",
65     volume = "40",
66     number = "1",
67     pages = "254--281"
68 gross 2371 }
69    
70 gross 2484 @Book{ TURCOTTE2002,
71     author = "Donald L. Turcotte and Gerald Schubert",
72 gross 3502 title = "{Geodynamics}",
73 gross 2484 publisher = "Cambridge University Press",
74 gross 2371 year = 2002,
75 gross 2484 edition = "Second"
76 gross 2371 }
77    
78 gross 2484 @Article{ MORESI2003,
79 gross 3502 title = "{A {Lagrangian} integration point finite element method for large deformation modeling of viscoelastic geomaterials}",
80     author = "L. Moresi and F. Dufour and H.--B. Muhlhaus",
81 gross 2484 journal = "Journal of Computational Physics",
82 gross 3502 pages = "476--497",
83 gross 2371 number = 184,
84 gross 3502 year = 2003
85 jgs 113 }
86    
87 gross 2484 @Article{ GROSZ99c,
88     author = "L.~Grosz",
89 gross 3502 title = "{Preconditioning by Incomplete Block Elimination}",
90 gross 2484 journal = "J. of Num. Lin. Alg. with Appl.",
91     year = "2000",
92     note = "to appear"
93 gross 2371 }
94 lgraham 1700
95 gross 2484 @Book{ VTK,
96     author = "Inc {The Kitware}",
97 gross 3502 title = "{Visualization Toolkit User's Guide.}",
98 gross 2484 publisher = "Kitware, Inc publishers.",
99     year = "1971",
100     address = "London",
101     edition = "second"
102 gross 2371 }
103 lgraham 1700
104 gross 2484 @Article{ BOURGOUIN2006,
105     author = "L. Bourgouin and H. Muhlhaus and A. J. Hale and A. Arsac",
106 gross 3502 title = "{Towards realistic simulations of lava dome growth using the level set method}",
107 gross 2484 journal = "Acta Geotechnica",
108     year = "2006",
109     volume = "1",
110     number = "4",
111     pages = "225--236"
112 gross 2371 }
113 lgraham 2115
114 gross 2484 @Article{ SUSSMAN1994,
115     author = "M. Sussman and P. Smereka and S. Osher",
116 gross 3502 title = "{A Level Set Approach for Computing Solutions to Incompressible Two-Phase Flow}",
117 gross 2484 journal = "Journal of Computational Physics",
118     year = "1994",
119     volume = "114",
120     pages = "146--159"
121 gross 2371 }
122 lgraham 2115
123 gross 2484 @Article{ LIN2005,
124     author = "C. Lin and H. Lee and T. Lee and L. J. Weber",
125 gross 3502 title = "{A Level Set Characteristic Galerkin Finite Element Method for Free Surface Flows}",
126 gross 2484 journal = "International Journal for Numerical Methods in Fluids",
127     year = "2005",
128     volume = "49",
129     pages = "521--547"
130 gross 2371 }
131 lgraham 1700
132 gross 2484 @Article{ SUCKALE2008,
133     author = "J. Suckale and J. C. Have",
134 gross 3502 title = "{An alternative numerical model of buoyancy driven flows}",
135 gross 2484 year = "2008",
136     pages = "1--43"
137 gross 2371 }
138 lgraham 1700
139 gross 2484 @Article{ GROSS2006,
140     author = "L. Gross and L. Bourgouin and A. J. Hale and H.-B Muhlhaus",
141 gross 3502 title = "{Interface Modeling in Incompressible Media using Level Sets in Escript}",
142 gross 2484 journal = "Physics of the Earth and Planetary Interiors",
143 gross 2432 year = 2007,
144 gross 2484 volume = "163",
145     pages = "23--34",
146     month = "Aug.",
147     doi = "doi:10.1016/j.pepi.2007.04.004"
148 gross 2371 }
149 lgraham 1700
150 gross 2484 @Article{ VANKEKEN1997,
151     author = "P. E. {van Keken} and S. D. King and H. Schmeling and U. R. Christensen and D. Neumeister and M. P. Doin",
152 gross 3502 title = "{A comparison of methods for the modeling of thermochemical convection}",
153 gross 2484 journal = "J. Geophys. Res.",
154     year = "1997",
155     volume = "102",
156     number = "B10",
157     pages = "22477--22495"
158 gross 2371 }
159 lgraham 1700
160 gross 2484 @Article{ AAMIRBERKYAN2008,
161     author = "A. Amirberkyan and L. Gross",
162 gross 3502 title = "{Efficient Solvers for Incompressible Fluid Flows in Geosciences}",
163 gross 2484 journal = "ANZIAM Journal",
164     year = "2008",
165     volume = "50",
166     pages = "C189--C203"
167 gross 2371 }
168 lgraham 1700
169 gross 2484 @Article{ MBENZI2005,
170     author = "M. Benzi and G. H. Golub and J. Liesen",
171 gross 3502 title = "{Numerical solution of saddle point problems}",
172 gross 2484 journal = "Acta Numerica",
173     year = "2005",
174     volume = "14",
175     pages = "1--137"
176 gross 2371 }
177 jfenwick 1966
178 gross 2484 @Misc{ OPENDX,
179     key = "opendx",
180     title = "{OpenDX}",
181     howpublished = "http://www.opendx.org/",
182     url = "http://www.opendx.org/"
183 gross 2371 }
184 jfenwick 1966
185 gross 2484 @Misc{ netCDF,
186     key = "netcdf",
187     title = "{netCDF}",
188     howpublished = "http://www.unidata.ucar.edu/software/netcdf",
189     url = "http://www.unidata.ucar.edu/software/netcdf"
190 jfenwick 1966 }
191    
192 gross 2484 @Misc{ UMFPACK,
193     key = "umfpack",
194     howpublished = "http://www.cise.ufl.edu/research/sparse/umfpack/",
195     url = "http://www.cise.ufl.edu/research/sparse/umfpack/"
196 jfenwick 1966 }
197    
198 gross 2484 @Misc{ MKL,
199     key = "MKL",
200 gross 3502 title = "{INTEL's Math Kernel Library}"
201 jfenwick 1966 }
202    
203 gross 2484 @Misc{ VisIt,
204     key = "visit",
205 caltinay 3367 title = "{VisIt homepage}",
206 gross 2484 howpublished = "https://wci.llnl.gov/codes/visit/home.html",
207     url = "https://wci.llnl.gov/codes/visit/home.html"
208 jfenwick 1966 }
209    
210 jduplessis 4880 @Misc{ Sympy,
211     key = "Sympy",
212     title = "{Sympy homepage}",
213     howpublished = "http://sympy.org/en/index.html",
214     url = "http://sympy.org/en/index.html"
215     }
216    
217 gross 2484 @Misc{ OPENMP,
218     key = "openmp",
219     title = "{OpenMP}",
220     howpublished = "http://openmp.org",
221     url = "http://openmp.org"
222 lgraham 2128 }
223    
224 gross 2484 @Misc{ MPI,
225     key = "mpi",
226     title = "{MPI}",
227     howpublished = "http://www.mpi-forum.org",
228     url = "http://www.mpi-forum.org"
229 jfenwick 2331 }
230    
231 gross 2484 @Book{ LBB,
232     author = "V. Girault and P. A. Raviart",
233 gross 3502 title = "{Finite Element Methods for Navier-Stokes Equations- Theory and Algorithms}",
234 gross 2484 publisher = "Springer Verlag, Berlin",
235     year = 1986
236 gross 2371 }
237    
238 gross 2718 @Misc{ SCSL,
239 gross 3502 title = "{SCSL (Scientific Computing Software Library)}",
240 gross 2484 url = "http://www.sgi.com/products/software/irix/scsl.html"
241 gross 2371 }
242    
243 gross 2484 @Manual{ GMSH,
244 gross 3502 title = "{Gmsh Reference Manual}",
245 gross 2484 author = "Christophe Geuzaine and Jean-Francois Remacle",
246     edition = "1.12",
247     month = "Aug",
248 gross 2371 year = 2003,
249 gross 2484 url = "http://www.geuz.org/gmsh"
250 gross 2371 }
251    
252 gross 2484 @Article{ RILU,
253 gross 3502 title = "{ARMS: an algebraic recursive multilevel solver for general sparse linear systems}",
254     author = "B. Suchomel and Y. Saad",
255 gross 2484 journal = "Numerical Linear Algebra with Applications",
256 gross 3502 pages = "1099--1506",
257 gross 2484 volume = "9",
258 gross 2371 number = 5,
259 gross 3502 year = 2002
260 gross 2371 }
261    
262 gross 3502 @Article{ PASTIX,
263     author = "P. H{\'e}non and P. Ramet and J. Roman",
264     title = "{{PaStiX}: A High-Performance Parallel Direct Solver for Sparse Symmetric Definite Systems}",
265     journal = "Parallel Computing",
266     year = "2002",
267     volume = "28",
268     number = "2",
269     pages = "301--321",
270     month = jan
271 caltinay 3293 }
272    
273 gross 3502 @Article{ Trilinos,
274     author = "Michael A. Heroux and Roscoe A. Bartlett and Vicki E. Howle and Robert J. Hoekstra and Jonathan J. Hu and Tamara G. Kolda and Richard B. Lehoucq and Kevin R. Long and Roger P. Pawlowski and Eric T. Phipps and Andrew G. Salinger and Heidi K. Thornquist and Ray S. Tuminaro and James M. Willenbring and Alan Williams and Kendall S. Stanley",
275     title = "{An overview of the Trilinos project}",
276     journal = "ACM Trans. Math. Softw.",
277     volume = "31",
278     number = "3",
279     year = "2005",
280     pages = "397--423",
281     publisher = "ACM Press",
282     address = "New York, NY, USA"
283 caltinay 3316 }
284    
285 gross 3502 @Article{ SuperLU,
286     author = "James W. Demmel and Stanley C. Eisenstat and John R. Gilbert and Xiaoye S. Li and Joseph W. H. Liu",
287     title = "{A supernodal approach to sparse partial pivoting}",
288     journal = "SIAM J. Matrix Analysis and Applications",
289     year = "1999",
290     volume = "20",
291     number = "3",
292     pages = "720--755"
293 caltinay 3316 }
294    
295 gross 3502 @Misc{ RIGHTHANDRULE,
296 jfenwick 3570 key="RHR",
297 gross 3502 title = "{Right-hand rule}",
298 jfenwick 3570 howpublished = "http://en.wikipedia.org/wiki/Right-hand_rule",
299 gross 2484 url = "http://en.wikipedia.org/wiki/Right-hand_rule"
300 gross 2371 }
301    
302 gross 2718 @Misc{ TETGEN,
303 gross 3502 title = "{TetGen: A Quality Tetrahedral Mesh Generator and Three-Dimensional Delaunay Triangulator}",
304 gross 2484 author = "Hang Si",
305     month = "Jan",
306 gross 2371 year = 2008,
307 gross 2718 howpublished = "http://tetgen.berlios.de",
308 gross 2484 url = "http://tetgen.berlios.de"
309 gross 2371 }
310    
311 gross 2718 @Misc{ NETGEN,
312 gross 3502 title = "{Netgen 1.4}",
313 gross 2484 author = "Tim Edwards",
314 gross 2718 howpublished = "http://opencircuitdesign.com/netgen/",
315 gross 2484 url = "http://opencircuitdesign.com/netgen/"
316 gross 2371 }
317    
318 gross 2484 @Article{ ELMAN,
319 jfenwick 3570 title = "Efficient preconditioning of the linearized Navier-Stokes equations for incompressible flow",
320     journal = "Journal of Computational and Applied Mathematics",
321     volume = "128",
322     number = "1--2",
323     pages = "261--279",
324     year = "2001",
325     note = "",
326     issn = "0377-0427",
327     doi = "DOI: 10.1016/S0377-0427(00)00515-X",
328     url = "http://www.sciencedirect.com/science/article/pii/S037704270000515X",
329     author = "David Silvester and Howard Elman and David Kay and Andrew Wathen",
330     keywords = "Navier-Stokes equations",
331     keywords = "Incompressible flow",
332     keywords = "Preconditioning",
333     keywords = "Multigrid iteration"
334 gross 2371 }
335    
336 gross 2484 @Article{ LEASTSQUARESFEM1994,
337 gross 2574 author = "A. I. Pehlivanov and G. F. Carey and R. D. Lazarov",
338 gross 3502 title = "{Least-Squares Mixed Finite Elements for Second-Order Elliptic Problems}",
339 gross 2484 journal = "SIAM Journal on Numerical Analysis",
340 gross 2371 year = 1994,
341 gross 2484 volume = "31",
342 gross 2371 number = 5,
343 gross 2484 pages = "1368--1377",
344     month = "October"
345 gross 2371 }
346    
347 gross 2484 @Article{ Muhlhaus2005,
348 gross 3502 title = "{Towards a self-consistent plate mantle model that includes elasticity: simple benchmarks and application to basic modes of convection}",
349     author = "Hans-Bernd Muhlhaus and Klaus Regenauer-Lieb",
350 gross 2484 journal = "Geophysical Journal International",
351 gross 3502 pages = "788--800(13)",
352 gross 2484 volume = "163",
353 gross 2371 number = 2,
354 gross 3502 month = "November",
355     year = 2005
356 gross 2484 }
357 gross 2371
358 gross 2574 @Manual{ NUMPY,
359 gross 3502 title = "{Numpy and Scipy Documentation}",
360 gross 2484 url = "http://docs.scipy.org/doc/",
361 gross 2718 howpublished = "http://docs.scipy.org/doc/",
362 gross 2484 author = "Scipy Community"
363 gross 2371 }
364    
365 gross 2574 @Manual{ matplotlib,
366 gross 3502 title = "{matplotlib}",
367 gross 2574 author = "John Hunter and Michael Droettboom and Darren Dale",
368     month = "July",
369     year = "2009",
370 gross 2718 howpublished = "http://matplotlib.sourceforge.net/",
371 gross 2574 url = "http://matplotlib.sourceforge.net/"
372     }
373    
374     @Manual{ mayavi,
375 jfenwick 3570 key="mayavi",
376 gross 3502 title = "{Mayavi2: The next generation scientific data visualization}",
377 gross 2574 year = "2009",
378 gross 2718 howpublished = "https://svn.enthought.com/enthought/wiki/MayaVi",
379 gross 2574 url = "https://svn.enthought.com/enthought/wiki/MayaVi"
380     }
381    
382 gross 2718 @Misc{ gnuplot,
383 gross 3502 title = "{gnuplot homepage}",
384 gross 2580 author = "Thomas Williams and Colin Kelley",
385     month = mar,
386     year = "2009",
387 gross 2718 howpublished = "http://www.gnuplot.info/",
388 gross 2580 url = "http://www.gnuplot.info/"
389     }
390    
391     @Manual{ SCIPY,
392 gross 3502 title = "{Numpy and Scipy Documentation}",
393     author = "The Scipy community community {community community}",
394 gross 2718 howpublished = "http://docs.scipy.org/doc/",
395 gross 2580 url = "http://docs.scipy.org/doc/"
396     }
397    
398 gross 2718 @Misc{ SCSL,
399 gross 3502 title = "{SCSL (Scientific Computing Software Library)}",
400     howpublished = "http://www.sgi.com/products/software/irix/scsl.html",
401     url = "http://www.sgi.com/products/software/irix/scsl.html"
402 gross 2717 }
403    
404 gross 2718 @Misc{ IDEAS,
405 jfenwick 3570 key="IDEAS",
406 gross 3502 title = "{I\_DEAS}",
407     howpublished = "http://www.plm.automation.siemens.com/en\\\_us/products/nx/",
408     url = "http://www.plm.automation.siemens.com/en_us/products/nx/"
409 gross 2717 }
410 gross 3502
411 gross 2718 @Misc{ VRML,
412 jfenwick 3570 key="VRML",
413 gross 3502 title = "{VRML}",
414     howpublished = "http://www.w3.org/MarkUp/VRML/",
415     url = "http://www.w3.org/MarkUp/VRML/"
416 gross 2717 }
417 gross 3502
418 gross 2718 @Misc{ STL,
419 jfenwick 3570 key="STL",
420 gross 3502 title = "{STL}",
421 jfenwick 3570 howpublished = "http://en.wikipedia.org/wiki/STL\_(file\_format)",
422 gross 3502 url = "http://en.wikipedia.org/wiki/STL_(file_format)"
423 gross 2717 }
424 gross 3502
425 gross 2718 @Misc{ NASTRAN,
426 jfenwick 3570 key="NASTRAN",
427 gross 3502 title = "{Nastran}",
428     howpublished = "http://simcompanion.mscsoftware.com/",
429     url = "http://simcompanion.mscsoftware.com/"
430 gross 2717 }
431 gross 3502
432 gross 2718 @Misc{ MEDIT,
433 jfenwick 3570 key="medit",
434 gross 3502 title = "{Medit}",
435     howpublished = "http://www-rocq.inria.fr/OpenFEM/Doc/",
436     url = "http://www-rocq.inria.fr/OpenFEM/Doc/"
437 gross 2717 }
438 gross 3502
439 gross 2718 @Misc{ CGNS,
440 jfenwick 3570 key="cgns",
441 gross 3502 title = "{CGNS}",
442     howpublished = "http://cgns.sourceforge.net/",
443     url = "http://cgns.sourceforge.net/"
444 gross 2717 }
445 gross 3502
446 gross 2718 @Misc{ PLOT3D,
447 jfenwick 3570 key="plot3d",
448 gross 3502 title = "{Plot3D}",
449     howpublished = "http://www.plot3d.net/",
450     url = "http://www.plot3d.net/"
451 gross 2717 }
452 gross 3502
453 gross 2718 @Misc{ DIFFPACK,
454 jfenwick 3570 key="diffpack",
455 gross 3502 title = "{Diffpack}",
456     howpublished = "http://www.diffpack.com/",
457     url = "http://www.diffpack.com/"
458 gross 2717 }
459 gross 3502
460 caltinay 4455 @Misc{ GOCAD,
461     key = "gocad",
462     title = "{Paradigm GOCAD homepage}",
463     howpublished = {\url{http://www.pdgm.com/Products/GOCAD}},
464     url = {http://www.pdgm.com/Products/GOCAD}
465     }
466    
467 gross 3502 @InProceedings{ lazyauspdc,
468     author = "Joel Fenwick and Lutz Gross",
469     title = "{Lazy Evaluation of PDE Coefficients in the EScript System}",
470     booktitle = "{Parallel and Distributed Computing 2010 (AusPDC2010)}",
471     pages = "71--76",
472     year = "2010",
473     editor = "Jinjun Chen and Rajiv Ranjan",
474     volume = "107",
475     series = "{Conferences in Research and Practice in Information Technology}",
476     month = "January",
477     issn = "1445-1336"
478 jfenwick 2923 }
479 gross 2717
480 gross 3502 @InProceedings{ LoulaCorrea2006a,
481     title = "{NUMERICAL ANALYSIS OF STABILIZED MIXED FINITE ELEMENT METHODS FOR DARCY FLOW }",
482     booktitle = "{III European Conference on Computational Mechanics Solids, Structures and Coupled Problems in Engineering }",
483     author = "Abimael F. D. Loula and Maicon R. Correa",
484     editor = "C.A. Mota Soares and others",
485     year = "2006 ",
486     localfile = "LoulaCorrea2006a.pdf"
487     }
488    
489     @Article{ MasudHughes2002a,
490     title = "{A stabilized mixed finite element method for Darcy flowArif Masud
491    
492     }",
493     author = "Arif Masud and Thomas J.R. Hughes",
494     journal = "Comput. Methods Appl. Mech. Engrg.",
495     pages = "4341--4370",
496     number = "191",
497     year = "2002",
498     localfile = "MasudHughes2002a.pdf
499     "
500     }
501    
502 gross 4052 @Book{ Kelley2004a,
503     author = "C. T. Kelley",
504     title = "{Iterative Methods for Linear and Nonlinear Equations}",
505     Series= "{Frontiers in Applied Mathematics}",
506     volume="18",
507     publisher = "Cambridge University Press",
508     year = 2004
509     }
510    
511     @ARTICLE{Schoenauer1981a,
512     author = {Sch{\"{o}}nauer, W. and Raith, K. and Glotz, G.},
513     title = {The principle of the difference of difference quotients as a key
514     to the selfadaptive solution of nonlinear partial differential equations},
515     journal = {Computer Methods in Applied Mechanics and Engineering},
516     year = {1981},
517     volume = {28},
518     pages = {327-359}
519     }
520    
521    
522 jfenwick 4705 @Misc{gaussfilter,
523 caltinay 5297 title = {Gaussian blur},
524     howpublished = {\url{http://en.wikipedia.org/wiki/Gaussian_blur}},
525     url = {http://en.wikipedia.org/wiki/Gaussian_blur},
526     urldate = {20130221},
527 jfenwick 4705 }
528 gross 4052

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